(function(ca,ya,za,x,Aa,u,q,v,p,s,z,Ba,t,D,B,E,C,M,A,N,K,Q,H,L,I,W,T,S,R,P,Z,$,V,aa,ea,fa,ga,ba,X,la,ma,na,oa,ha,ia,pa,qa,ra,sa,ta,ja,ua,va,ka,wa,xa,c,j,da){Jmol.___JmolDate="$Date: 2015-01-20 12:29:14 -0600 (Tue, 20 Jan 2015) $";Jmol.___fullJmolProperties="src/org/jmol/viewer/Jmol.properties";Jmol.___JmolVersion="14.2.11_2015.01.20";(function(a){a._Loader.registerPackages("java",["io","lang","lang.reflect","util"]);var b=java.util;a._Loader.ignore("net.sf.j2s.ajax.HttpRequest java.util.MapEntry.Type java.net.UnknownServiceException java.lang.Runtime java.security.AccessController java.security.PrivilegedExceptionAction java.io.File java.io.FileInputStream java.io.FileWriter java.io.OutputStreamWriter java.util.Calendar java.text.SimpleDateFormat java.text.DateFormat java.util.concurrent.Executors".split(" "));
Math.log10||(Math.log10=function(a){return Math.log(a)/2.302585092994046});if(a._supportsNativeObject)for(var d=0;d<a._extendedObjectMethods.length-2;d++){var f=a._extendedObjectMethods[d];Array.prototype[f]=a._O.prototype[f];Number.prototype[f]=a._O.prototype[f]}java.lang.Number=Number;Number.__CLASS_NAME__="Number";ga(Number,java.io.Serializable);Number.equals=a._innerFunctions.equals;Number.getName=a._innerFunctions.getName;c(Number,"shortValue",function(){var a=Math.round(this)&65535;return 0>
this&&0<a?a-65536:a});c(Number,"byteValue",function(){var a=Math.round(this)&255;return 0>this&&0<a?a-256:a});c(Number,"intValue",function(){return Math.round(this)&4294967295});c(Number,"longValue",function(){return Math.round(this)});c(Number,"floatValue",function(){return this.valueOf()});c(Number,"doubleValue",function(){return parseFloat(this.valueOf())});j(Number,"hashCode",function(){return this.valueOf()});java.lang.Integer=Integer=function(){p(this,arguments)};aa(Integer,"Integer",Number,
Comparable,null,!0);Integer.prototype.valueOf=function(){return 0};Integer.toString=Integer.prototype.toString=function(){return 0!=arguments.length?""+arguments[0]:this===Integer?"class java.lang.Integer":""+this.valueOf()};X(Integer,function(a){null==a&&(a=0);"number"!=typeof a&&(a=Integer.parseIntRadix(a,10));this.valueOf=function(){return a}});Integer.MIN_VALUE=Integer.prototype.MIN_VALUE=-2147483648;Integer.MAX_VALUE=Integer.prototype.MAX_VALUE=2147483647;Integer.TYPE=Integer.prototype.TYPE=
Integer;c(Integer,"bitCount",function(a){a-=a>>>1&1431655765;a=(a&858993459)+(a>>>2&858993459);a=a+(a>>>4)&252645135;a+=a>>>8;return a+(a>>>16)&63},"Number");Integer.bitCount=Integer.prototype.bitCount;c(Integer,"numberOfLeadingZeros",function(a){if(0==a)return 32;var b=1;0==a>>>16&&(b+=16,a<<=16);0==a>>>24&&(b+=8,a<<=8);0==a>>>28&&(b+=4,a<<=4);0==a>>>30&&(b+=2,a<<=2);return b-(a>>>31)},"Number");Integer.numberOfLeadingZeros=Integer.prototype.numberOfLeadingZeros;c(Integer,"numberOfTrailingZeros",
function(a){if(0==a)return 32;var b=31,d=a<<16;0!=d&&(b-=16,a=d);d=a<<8;0!=d&&(b-=8,a=d);d=a<<4;0!=d&&(b-=4,a=d);d=a<<2;0!=d&&(b-=2,a=d);return b-(a<<1>>>31)},"Number");Integer.numberOfTrailingZeros=Integer.prototype.numberOfTrailingZeros;c(Integer,"parseIntRadix",function(a,b){if(null==a)throw new NumberFormatException("null");if(2>b)throw new NumberFormatException("radix "+b+" less than Character.MIN_RADIX");if(36<b)throw new NumberFormatException("radix "+b+" greater than Character.MAX_RADIX");
if(10==b)for(var d=a.length;0<=--d;){var f=a.charCodeAt(d);if(!(48<=f&&57>=f)&&(0<d||43!=f&&45!=f))throw new NumberFormatException("Not a Number : "+a);}d=parseInt(a,b);if(isNaN(d))throw new NumberFormatException("Not a Number : "+a);return d},"String, Number");Integer.parseIntRadix=Integer.prototype.parseIntRadix;c(Integer,"parseInt",function(a){return Integer.parseIntRadix(a,10)},"String");Integer.parseInt=Integer.prototype.parseInt;j(Integer,"$valueOf",function(a){return new Integer(a)});Integer.$valueOf=
Integer.prototype.$valueOf;j(Integer,"equals",function(a){return null==a||!q(a,Integer)?!1:a.valueOf()==this.valueOf()},"Object");Integer.toHexString=Integer.prototype.toHexString=function(a){a.valueOf&&(a=a.valueOf());if(0>a){var b=a&16777215;return(a>>24&255)._numberToString(16)+(b=b._numberToString(16)).substring(b.length-6)}return a._numberToString(16)};Integer.toOctalString=Integer.prototype.toOctalString=function(a){a.valueOf&&(a=a.valueOf());return a._numberToString(8)};Integer.toBinaryString=
Integer.prototype.toBinaryString=function(a){a.valueOf&&(a=a.valueOf());return a._numberToString(2)};Integer.decodeRaw=c(Integer,"decodeRaw",function(a){0<=a.indexOf(".")&&(a="");var b=a.startsWith("-")?1:0;a=a.replace(/\#/,"0x").toLowerCase();b=a.startsWith("0x",b)?16:a.startsWith("0",b)?8:10;a=Number(a);return 8==b?parseInt(a,8):a},"~S");Integer.decode=c(Integer,"decode",function(a){a=Integer.decodeRaw(a);if(isNaN(a)||a<Integer.MIN_VALUE||a>Integer.MAX_VALUE)throw new NumberFormatException("Invalid Integer");
return new Integer(a)},"~S");j(Integer,"hashCode",function(){return this.valueOf()});java.lang.Long=Long=function(){p(this,arguments)};aa(Long,"Long",Number,Comparable,null,!0);Long.prototype.valueOf=function(){return 0};Long.toString=Long.prototype.toString=function(){return 0!=arguments.length?""+arguments[0]:this===Long?"class java.lang.Long":""+this.valueOf()};X(Long,function(a){null==a&&(a=0);a="number"==typeof a?Math.round(a):Integer.parseIntRadix(a,10);this.valueOf=function(){return a}});Long.TYPE=
Long.prototype.TYPE=Long;c(Long,"parseLong",function(a,b){return Integer.parseInteger(a,b||10)});Long.parseLong=Long.prototype.parseLong;j(Long,"$valueOf",function(a){return new Long(a)});Long.$valueOf=Long.prototype.$valueOf;j(Long,"equals",function(a){return null==a||!q(a,Long)?!1:a.valueOf()==this.valueOf()},"Object");Long.toHexString=Long.prototype.toHexString=function(a){return a.toString(16)};Long.toOctalString=Long.prototype.toOctalString=function(a){return a.toString(8)};Long.toBinaryString=
Long.prototype.toBinaryString=function(a){return a.toString(2)};Long.decode=c(Long,"decode",function(a){a=Integer.decodeRaw(a);if(isNaN(a))throw new NumberFormatException("Invalid Long");return new Long(a)},"~S");java.lang.Short=Short=function(){p(this,arguments)};aa(Short,"Short",Number,Comparable,null,!0);Short.prototype.valueOf=function(){return 0};Short.toString=Short.prototype.toString=function(){return 0!=arguments.length?""+arguments[0]:this===Short?"class java.lang.Short":""+this.valueOf()};
X(Short,function(a){null==a&&(a=0);"number"!=typeof a&&(a=Integer.parseIntRadix(a,10));a=a.shortValue();this.valueOf=function(){return a}});Short.MIN_VALUE=Short.prototype.MIN_VALUE=-32768;Short.MAX_VALUE=Short.prototype.MAX_VALUE=32767;Short.TYPE=Short.prototype.TYPE=Short;c(Short,"parseShortRadix",function(a,b){return Integer.parseIntRadix(a,b).shortValue()},"String, Number");Short.parseShortRadix=Short.prototype.parseShortRadix;c(Short,"parseShort",function(a){return Short.parseShortRadix(a,10)},
"String");Short.parseShort=Short.prototype.parseShort;j(Short,"$valueOf",function(a){return new Short(a)});Short.$valueOf=Short.prototype.$valueOf;j(Short,"equals",function(a){return null==a||!q(a,Short)?!1:a.valueOf()==this.valueOf()},"Object");Short.toHexString=Short.prototype.toHexString=function(a){return a.toString(16)};Short.toOctalString=Short.prototype.toOctalString=function(a){return a.toString(8)};Short.toBinaryString=Short.prototype.toBinaryString=function(a){return a.toString(2)};Short.decode=
c(Short,"decode",function(a){a=Integer.decodeRaw(a);if(isNaN(a)||-32768>a||32767<a)throw new NumberFormatException("Invalid Short");return new Short(a)},"~S");java.lang.Byte=Byte=function(){p(this,arguments)};aa(Byte,"Byte",Number,Comparable,null,!0);Byte.prototype.valueOf=function(){return 0};Byte.toString=Byte.prototype.toString=function(){return 0!=arguments.length?""+arguments[0]:this===Byte?"class java.lang.Byte":""+this.valueOf()};t(Byte,function(a){"number"!=typeof a&&(a=Integer.parseIntRadix(a,
10));a=a.byteValue();this.valueOf=function(){return a}});Byte.serialVersionUID=Byte.prototype.serialVersionUID=-0x63b19f7b11af0c00;Byte.MIN_VALUE=Byte.prototype.MIN_VALUE=-128;Byte.MAX_VALUE=Byte.prototype.MAX_VALUE=127;Byte.SIZE=Byte.prototype.SIZE=8;Byte.TYPE=Byte.prototype.TYPE=Byte;c(Byte,"parseByteRadix",function(a,b){return Integer.parseIntRadix(a,b).byteValue()},"String, Number");Byte.parseByteRadix=Byte.prototype.parseByteRadix;c(Byte,"parseByte",function(a){return Byte.parseByte(a,10)},"String");
Byte.parseByte=Byte.prototype.parseByte;j(Byte,"$valueOf",function(a){return new Byte(a)});Byte.$valueOf=Byte.prototype.$valueOf;j(Byte,"equals",function(a){return null==a||!q(a,Byte)?!1:a.valueOf()==this.valueOf()},"Object");Byte.toHexString=Byte.prototype.toHexString=function(a){return a.toString(16)};Byte.toOctalString=Byte.prototype.toOctalString=function(a){return a.toString(8)};Byte.toBinaryString=Byte.prototype.toBinaryString=function(a){return a.toString(2)};Byte.decode=c(Byte,"decode",function(a){a=
Integer.decodeRaw(a);if(isNaN(a)||-128>a||127<a)throw new NumberFormatException("Invalid Byte");return new Byte(a)},"~S");a._floatToString=function(a){a=""+a;0>a.indexOf(".")&&0>a.indexOf("e")&&(a+=".0");return a};java.lang.Float=Float=function(){p(this,arguments)};aa(Float,"Float",Number,Comparable,null,!0);Float.prototype.valueOf=function(){return 0};Float.toString=Float.prototype.toString=function(){return 0!=arguments.length?a._floatToString(arguments[0]):this===Float?"class java.lang.Float":
a._floatToString(this.valueOf())};X(Float,function(a){null==a&&(a=0);"number"!=typeof a&&(a=Number(a));this.valueOf=function(){return a}});Float.serialVersionUID=Float.prototype.serialVersionUID=-0x2512365d24c31000;Float.MIN_VALUE=Float.prototype.MIN_VALUE=3.4028235E38;Float.MAX_VALUE=Float.prototype.MAX_VALUE=1.4E-45;Float.NEGATIVE_INFINITY=Number.NEGATIVE_INFINITY;Float.POSITIVE_INFINITY=Number.POSITIVE_INFINITY;Float.NaN=Number.NaN;Float.TYPE=Float.prototype.TYPE=Float;c(Float,"parseFloat",function(a){if(null==
a)throw new NumberFormatException("null");if("number"==typeof a)return a;var b=Number(a);if(isNaN(b))throw new NumberFormatException("Not a Number : "+a);return b},"String");Float.parseFloat=Float.prototype.parseFloat;j(Float,"$valueOf",function(a){return new Float(a)});Float.$valueOf=Float.prototype.$valueOf;c(Float,"isNaN",function(a){return isNaN(a)},"Number");Float.isNaN=Float.prototype.isNaN;c(Float,"isInfinite",function(a){return!isFinite(a)},"Number");Float.isInfinite=Float.prototype.isInfinite;
j(Float,"equals",function(a){return null==a||!q(a,Float)?!1:a.valueOf()==this.valueOf()},"Object");java.lang.Double=Double=function(){p(this,arguments)};aa(Double,"Double",Number,Comparable,null,!0);Double.prototype.valueOf=function(){return 0};Double.toString=Double.prototype.toString=function(){return 0!=arguments.length?a._floatToString(arguments[0]):this===Double?"class java.lang.Double":a._floatToString(this.valueOf())};X(Double,function(a){null==a&&(a=0);"number"!=typeof a&&(a=Double.parseDouble(a));
this.valueOf=function(){return a}});Double.serialVersionUID=Double.prototype.serialVersionUID=-0x7f4c3db5d6940400;Double.MIN_VALUE=Double.prototype.MIN_VALUE=4.9E-324;Double.MAX_VALUE=Double.prototype.MAX_VALUE=1.7976931348623157E308;Double.NEGATIVE_INFINITY=Number.NEGATIVE_INFINITY;Double.POSITIVE_INFINITY=Number.POSITIVE_INFINITY;Double.NaN=Number.NaN;Double.TYPE=Double.prototype.TYPE=Double;c(Double,"isNaN",function(a){return isNaN(a)},"Number");Double.isNaN=Double.prototype.isNaN;c(Double,"isInfinite",
function(a){return!isFinite(a)},"Number");Double.isInfinite=Double.prototype.isInfinite;c(Double,"parseDouble",function(a){if(null==a)throw new NumberFormatException("null");if("number"==typeof a)return a;var b=Number(a);if(isNaN(b))throw new NumberFormatException("Not a Number : "+a);return b},"String");Double.parseDouble=Double.prototype.parseDouble;c(Double,"$valueOf",function(a){return new Double(a)},"Number");Double.$valueOf=Double.prototype.$valueOf;j(Double,"equals",function(a){return null==
a||!q(a,Double)?!1:a.valueOf()==this.valueOf()},"Object");Boolean=java.lang.Boolean=Boolean||function(){p(this,arguments)};if(a._supportsNativeObject)for(d=0;d<a._extendedObjectMethods.length;d++)f=a._extendedObjectMethods[d],Boolean.prototype[f]=a._O.prototype[f];Boolean.__CLASS_NAME__="Boolean";ga(Boolean,[java.io.Serializable,java.lang.Comparable]);Boolean.equals=a._innerFunctions.equals;Boolean.getName=a._innerFunctions.getName;Boolean.serialVersionUID=Boolean.prototype.serialVersionUID=-0x32df8d7f2a630600;
X(Boolean,function(a){var b=("string"==typeof a?Boolean.toBoolean(a):a)?!0:!1;this.valueOf=function(){return b}},"~O");Boolean.parseBoolean=c(Boolean,"parseBoolean",function(a){return Boolean.toBoolean(a)},"~S");c(Boolean,"booleanValue",function(){return this.valueOf()});Boolean.$valueOf=j(Boolean,"$valueOf",function(a){return("string"==typeof a?"true".equalsIgnoreCase(a):a)?Boolean.TRUE:Boolean.FALSE});j(Boolean,"toString",function(){return this.valueOf()?"true":"false"});j(Boolean,"hashCode",function(){return this.valueOf()?
1231:1237});j(Boolean,"equals",function(a){return q(a,Boolean)?this.booleanValue()==a.booleanValue():!1},"~O");Boolean.getBoolean=c(Boolean,"getBoolean",function(a){var b=!1;try{b=Boolean.toBoolean(System.getProperty(a))}catch(d){if(!q(d,IllegalArgumentException)&&!q(d,NullPointerException))throw d;}return b},"~S");j(Boolean,"compareTo",function(a){return a.value==this.value?0:this.value?1:-1},"Boolean");Boolean.toBoolean=c(Boolean,"toBoolean",($fz=function(a){return null!=a&&a.equalsIgnoreCase("true")},
$fz.isPrivate=!0,$fz),"~S");Boolean.TRUE=Boolean.prototype.TRUE=new Boolean(!0);Boolean.FALSE=Boolean.prototype.FALSE=new Boolean(!1);Boolean.TYPE=Boolean.prototype.TYPE=Boolean;a._Encoding={};(function(b){b.UTF8="utf-8";b.UTF16="utf-16";b.ASCII="ascii";b.guessEncoding=function(a){return 239==a.charCodeAt(0)&&187==a.charCodeAt(1)&&191==a.charCodeAt(2)?b.UTF8:255==a.charCodeAt(0)&&254==a.charCodeAt(1)?b.UTF16:b.ASCII};b.readUTF8=function(a){var d=this.guessEncoding(a),f=0;d==b.UTF8?f=3:d==b.UTF16&&
(f=2);for(d=[];f<a.length;f++){var c=a.charCodeAt(f);if(128>c)d[d.length]=a.charAt(f);else if(192<c&&224>c){c&=31;f++;var e=a.charCodeAt(f)&63,c=(c<<6)+e;d[d.length]=String.fromCharCode(c)}else if(224<=c){c&=15;f++;e=a.charCodeAt(f)&63;f++;var h=a.charCodeAt(f)&63,c=(c<<12)+(e<<6)+h;d[d.length]=String.fromCharCode(c)}}return d.join("")};b.convert2UTF8=function(a){var d=this.guessEncoding(a),f=0;if(d==b.UTF8)return a;d==b.UTF16&&(f=2);for(var d=Array(0+a.length-f),c=f;c<a.length;c++){var e=a.charCodeAt(c);
if(128>e)d[0+c-f]=a.charAt(c);else if(2047>=e){var h=192+((e&1984)>>6),j=128+(e&63);d[0+c-f]=String.fromCharCode(h)+String.fromCharCode(j)}else h=224+((e&61440)>>12),j=128+((e&4032)>>6),e=128+(e&63),d[0+c-f]=String.fromCharCode(h)+String.fromCharCode(j)+String.fromCharCode(e)}return d.join("")};b.base64Chars="ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/".split("");b.encodeBase64=function(a){if(null==a||0==a.length)return a;for(var d=b.base64Chars,f=a.length,c=0,e=[],h,j;c<f;)h=
a.charCodeAt(c++),e[e.length]=d[h>>2],c<f?(j=a.charCodeAt(c++),e[e.length]=d[h<<4&48|j>>4],c<f?(h=a.charCodeAt(c++),e[e.length]=d[j<<2&60|h>>6],e[e.length]=d[h&63]):(e[e.length]=d[j<<2&60],e[e.length]="=")):(e[e.length]=d[h<<4&48],e[e.length]="=",e[e.length]="=");return e.join("")};b.decodeBase64=function(a){if(null==a||0==a.length)return a;var d=b.base64Chars,f=b.xBase64Chars;if(null==b.xBase64Chars){for(var f={},c=0;c<d.length;c++)f[d[c]]=c;b.xBase64Chars=f}for(var d=a.length,c=0,e=[],h,j,F,G,q=
0;c<d&&6E4>q++;)h=f[a.charAt(c++)],j=f[a.charAt(c++)],F=f[a.charAt(c++)],G=f[a.charAt(c++)],e[e.length]=String.fromCharCode(h<<2&255|j>>4),null!=F&&(e[e.length]=String.fromCharCode(j<<4&255|F>>2),null!=G&&(e[e.length]=String.fromCharCode(F<<6&255|G)));return e.join("")};if(null==String.prototype.$replace){java.lang.String=String;if(a._supportsNativeObject)for(var d=0;d<a._extendedObjectMethods.length;d++){var f=a._extendedObjectMethods[d];"to$tring"==f||("toString"==f||"equals"==f||"hashCode"==f)||
(String.prototype[f]=a._O.prototype[f])}ga(String,[java.io.Serializable,CharSequence,Comparable]);String.getName=a._innerFunctions.getName;String.serialVersionUID=String.prototype.serialVersionUID=-0x5f0f5bc785c44c00;(function(a){a.$replace=function(a,b){if(a==b||0>this.indexOf(a))return""+this;1==a.length?0<="\\$.*+|?^{}()[]".indexOf(a)&&(a="\\"+a):a=a.replace(/([\\\$\.\*\+\|\?\^\{\}\(\)\[\]])/g,function(a,b){return"\\"+b});return this.replace(RegExp(a,"gm"),b)};a.$generateExpFunction=function(a){var b=
[],d=[],f=0;b[0]="";for(var c=0;c<a.length;c++){var g=a.charAt(c);c!=a.length-1&&"\\"==g?(c++,g=a.charAt(c),"\\"==g&&(b[f]+="\\"),b[f]+=g):c!=a.length-1&&"$"==g?(c++,d[f]=parseInt(a.charAt(c)),f++,b[f]=""):b[f]="\r"==g?b[f]+"\\r":"\n"==g?b[f]+"\\n":"\t"==g?b[f]+"\\t":'"'==g?b[f]+'\\"':b[f]+g}a="f = function (";f=Math.max.apply({},d);for(c=0;c<=f;c++)a+="$"+c,c!=f&&(a+=", ");a+=") { return ";for(c=0;c<b.length-1;c++)a+='"'+b[c]+'" + $'+d[c]+" + ";a+='"'+b[c]+'"; }';eval(a);return null};a.replaceAll=
function(a,b){return this.replace(RegExp(a,"gm"),this.$generateExpFunction(b))};a.replaceFirst=function(a,b){return this.replace(RegExp(a,"m"),this.$generateExpFunction(b))};a.matches=function(a){null!=a&&(a="^("+a+")$");a=this.match(RegExp(a,"gm"));return null!=a&&0!=a.length};a.regionMatches=function(a,b,d,f,c){if("number"==typeof a||!0!=a&&!1!=a)c=f,f=d,d=b,b=a,a=!1;if(0>f||0>b||b>this.length-c||f>d.length-c)return!1;b=this.substring(b,b+c);d=d.substring(f,f+c);a&&(b=b.toLowerCase(),d=d.toLowerCase());
return b==d};a.$plit=function(a,b){if(!b&&" "==a)return this.split(a);if(null!=b&&0<b){if(1==b)return this;var d=RegExp("("+a+")","gm"),f=1,c=this.replace(d,function(a){f++;return f==b?"@@_@@":a}),d=RegExp(a,"gm"),d=this.split(d);d.length>b&&(d[b-1]=c.substring(c.indexOf("@@_@@")+5),d.length=b);return d}d=RegExp(a,"gm");return this.split(d)};a.trim||(a.trim=function(){return this.replace(/^\s+/g,"").replace(/\s+$/g,"")});if(!a.startsWith||!a.endsWith){var d=function(a,b,d){var f=d,c=0,g=b.length;
if(0>d||d>a.length-g)return!1;for(;0<=--g;)if(a.charAt(f++)!=b.charAt(c++))return!1;return!0};a.startsWith=function(a){return 1==arguments.length?d(this,arguments[0],0):2==arguments.length?d(this,arguments[0],arguments[1]):!1};a.endsWith=function(a){return d(this,a,this.length-a.length)}}a.equals=function(a){return this.valueOf()==a};a.equalsIgnoreCase=function(a){return null==a?!1:this==a||this.toLowerCase()==a.toLowerCase()};a.hash=0;a.hashCode=function(){var a=this.hash;if(0==a){for(var b=0,d=
this.length,f=0;f<d;f++)a=31*a+this.charCodeAt(b++),a&=4294967295;this.hash=a}return a};a.getBytes=function(){if(4==arguments.length)return this.getChars(arguments[0],arguments[1],arguments[2],arguments[3]);var a=this;if(1==arguments.length){for(var d=arguments[0].toString().toLowerCase(),f="utf-8 UTF8 us-ascii iso-8859-1 8859_1 gb2312 gb18030 gbk".split(" "),c=!1,e=0;e<f.length;e++)if(f[e]==d){c=!0;break}if(!c)throw new java.io.UnsupportedEncodingException;if("utf-8"==d||"utf8"==d)a=b.convert2UTF8(this)}d=
Array(a.length);for(e=c=f=0;e<a.length;e++)f=a.charCodeAt(e),255<f?(d[c]=26,d[c+1]=f&255,d[c+2]=(f&65280)>>8,c+=2):d[c]=f,c++;return d};a.contains=function(a){return 0<=this.indexOf(a)};a.compareTo=function(a){return this>a?1:this<a?-1:0};a.toCharArray=function(){for(var a=Array(this.length),b=0;b<this.length;b++)a[b]=this.charAt(b);return a};String.value0f=String.valueOf;String.valueOf=function(a){if("undefined"==a)return String.value0f();if(a instanceof Array){if(1==arguments.length)return a.join("");
for(var b=arguments[1],d=arguments[2],f=Array(d),c=0;c<d;c++)f[c]=a[b+c];return f.join("")}return""+a};a.subSequence=function(a,b){return this.substring(a,b)};a.compareToIgnoreCase=function(a){if(null==a)throw new NullPointerException;var b=this.toUpperCase(),d=a.toUpperCase();if(b==d)return 0;b=this.toLowerCase();d=a.toLowerCase();return b==d?0:b>d?1:-1};a.contentEquals=function(a){if(this.length!=a.length())return!1;a=a.getValue();for(var b=0,d=0,f=this.length;0!=f--;)if(this.charCodeAt(b++)!=a[d++])return!1;
return!0};a.getChars=function(a,b,d,f){if(0>a)throw new StringIndexOutOfBoundsException(a);if(b>this.length)throw new StringIndexOutOfBoundsException(b);if(a>b)throw new StringIndexOutOfBoundsException(b-a);if(null==d)throw new NullPointerException;for(var c=0;c<b-a;c++)d[f+c]=this.charAt(a+c)};a.$concat=a.concat;a.concat=function(a){if(null==a)throw new NullPointerException;return this.$concat(a)};a.$lastIndexOf=a.lastIndexOf;a.lastIndexOf=function(a,b){return null!=b&&0>=b+this.length?-1:null!=
b?this.$lastIndexOf(a,b):this.$lastIndexOf(a)};a.intern=function(){return this.valueOf()};String.copyValueOf=a.copyValueOf=function(){return 1==arguments.length?String.instantialize(arguments[0]):String.instantialize(arguments[0],arguments[1],arguments[2])};a.codePointAt||(a.codePointAt=a.charCodeAt)})(String.prototype);String.instantialize=function(){switch(arguments.length){case 0:return new String;case 1:var a=arguments[0];if("string"==typeof a||a instanceof String)return new String(a);if(a instanceof
Array||a instanceof Int32Array){if(0==a.length)return"";if("number"!=typeof a[0])return a.join("");for(var d=Array(a.length),f=0;f<a.length;f++)d[f]=String.fromCharCode(a[f]&255);return b.readUTF8(d.join(""))}if("StringBuffer"==a.__CLASS_NAME__||"java.lang.StringBuffer"==a.__CLASS_NAME__){for(var d=a.shareValue(),c=a.length(),a=Array(c),f=0;f<c;f++)a[f]=d[f];return a.join("")}return""+a;case 2:return a=arguments[0],c=arguments[1],"string"==typeof c?String.instantialize(a,0,a.length,c):String.instantialize(a,
c,0,a.length);case 3:var a=arguments[0],e=arguments[1],c=arguments[2];arguments[2]instanceof Array&&(a=arguments[2],e=arguments[0],c=arguments[1]);d=Array(c);if(0>e||c+e>a.length)throw new IndexOutOfBoundsException;if(0<c)if(null!=a[e].length)for(f=0;f<c;f++)d[f]=a[e+f];else for(f=0;f<c;f++)d[f]=String.fromCharCode(a[e+f]);return d.join("");case 4:var a=arguments[0],h=arguments[3];if("string"==typeof h||h instanceof String){e=arguments[1];c=arguments[2];d=Array(c);for(f=0;f<c;f++)d[f]=a[e+f],"number"==
typeof d[f]&&(d[f]=String.fromCharCode(d[f]&255));f=h.toLowerCase();return"utf-8"==f||"utf8"==f?b.readUTF8(d.join("")):d.join("")}f=arguments[3];e=arguments[2];c=arguments[1];d=Array(f);if(0==c)for(;0<f--;)d[f]=String.fromCharCode(a[f+e]&255);else for(c<<=8;0<f--;)d[f]=String.fromCharCode(c|a[f+e]&255);return d.join("");default:d="";for(f=0;f<arguments.length;f++)d+=arguments[f];return d}};-1!=navigator.userAgent.toLowerCase().indexOf("chrome")&&(String.prototype.toString=function(){return this.valueOf()})}})(a._Encoding);
c$=s(function(){this.value=0;p(this,arguments)},java.lang,"Character",null,[java.io.Serializable,Comparable]);t(c$,function(a){this.value=a},"~N");c(c$,"charValue",function(){return this.value});j(c$,"hashCode",function(){return this.value.charCodeAt(0)});j(c$,"equals",function(a){return q(a,Character)?this.value.charCodeAt(0)==a.charValue().charCodeAt(0):!1},"~O");j(c$,"compareTo",function(a){return this.value.charCodeAt(0)-a.value.charCodeAt(0)},"Character");c$.toLowerCase=c(c$,"toLowerCase",function(a){return(""+
a).toLowerCase().charAt(0)},"~N");c$.toUpperCase=c(c$,"toUpperCase",function(a){return(""+a).toUpperCase().charAt(0)},"~N");c$.isDigit=c(c$,"isDigit",function(a){a=a.charCodeAt(0);return 48<=a&&57>=a},"~N");c$.isUpperCase=c(c$,"isUpperCase",function(a){a=a.charCodeAt(0);return 65<=a&&90>=a},"~N");c$.isLowerCase=c(c$,"isLowerCase",function(a){a=a.charCodeAt(0);return 97<=a&&122>=a},"~N");c$.isWhitespace=c(c$,"isWhitespace",function(a){a=a.charCodeAt(0);return 28<=a&&32>=a||9<=a&&13>=a||5760==a||8192<=
a&&8199!=a&&(8203>=a||8232==a||8233==a||12288==a)},"~N");c$.isLetter=c(c$,"isLetter",function(a){a=a.charCodeAt(0);return 65<=a&&90>=a||97<=a&&122>=a},"~N");c$.isLetterOrDigit=c(c$,"isLetterOrDigit",function(a){a=a.charCodeAt(0);return 65<=a&&90>=a||97<=a&&122>=a||48<=a&&57>=a},"~N");c$.isSpaceChar=c(c$,"isSpaceChar",function(a){a=a.charCodeAt(0);if(32==a||160==a||5760==a)return!0;if(8192>a)return!1;8203>=returni||8232==a||8233==a||8239==a||12288==a},"~N");c$.digit=c(c$,"digit",function(a,b){var d=
a.charCodeAt(0);if(2<=b&&36>=b&&128>d){var f=-1;48<=d&&57>=d?f=d-48:97<=d&&122>=d?f=d-87:65<=d&&90>=d&&(f=d-55);return f<b?f:-1}return-1},"~N,~N");j(c$,"toString",function(){return String.valueOf([this.value])});c$.toString=j(c$,"toString",function(a){return this===Character?"class java.lang.Character":String.valueOf(a)},"~N");C(c$,"MIN_VALUE","\x00","MAX_VALUE","\uffff","MIN_RADIX",2,"MAX_RADIX",36,"TYPE",null);java.lang.Character.TYPE=java.lang.Character.prototype.TYPE=java.lang.Character;Array.getComponentType=
function(){return Object};c$=A(java.lang.reflect,"Array");c$.newInstance=c(c$,"newInstance",function(){return P(length)},"Class,~N");b.Date=Date;Date.TYPE="javautil.Date";Date.__CLASS_NAME__="Date";ga(Date,[java.io.Serializable,java.lang.Comparable]);c(b.Date,"clone",function(){return new Date(this.getTime())});c(b.Date,"before",function(a){return this.getTime()<a.getTime()},"javautil.Date");c(b.Date,"after",function(a){return this.getTime()>a.getTime()},"javautil.Date");c(b.Date,"equals",function(a){return q(a,
b.Date)&&this.getTime()==a.getTime()},"Object");c(b.Date,"compareTo",function(a){var b=this.getTime();a=a.getTime();return b<a?-1:b==a?0:1},"javautil.Date");c(b.Date,"compareTo",function(a){return this.compareTo(a)},"Object");j(b.Date,"hashCode",function(){var a=this.getTime();return parseInt(a)^parseInt(a>>32)});c$=s(function(){this.source=null;p(this,arguments)},b,"EventObject",null,java.io.Serializable);t(c$,function(a){if(null!=a)this.source=a;else throw new IllegalArgumentException;},"~O");c(c$,
"getSource",function(){return this.source});j(c$,"toString",function(){return this.getClass().getName()+"[source="+String.valueOf(this.source)+"]"});H(b,"EventListener");c$=s(function(){this.listener=null;p(this,arguments)},b,"EventListenerProxy",null,b.EventListener);t(c$,function(a){this.listener=a},"javautil.EventListener");c(c$,"getListener",function(){return this.listener});H(b,"Iterator");H(b,"ListIterator",b.Iterator);H(b,"Enumeration");H(b,"Collection",Iterable);H(b,"Set",b.Collection);H(b,
"Map");H(b.Map,"Entry");H(b,"List",b.Collection);H(b,"Queue",b.Collection);H(b,"RandomAccess");c$=s(function(){this.stackTrace=this.cause=this.detailMessage=null;p(this,arguments)},java.lang,"Throwable",null,java.io.Serializable);N(c$,function(){this.cause=this});t(c$,function(){this.fillInStackTrace()});t(c$,function(a){this.fillInStackTrace();this.detailMessage=a},"~S");t(c$,function(a,b){this.fillInStackTrace();this.detailMessage=a;this.cause=b},"~S,Throwable");t(c$,function(a){this.fillInStackTrace();
this.detailMessage=null==a?null:a.toString();this.cause=a},"Throwable");c(c$,"getMessage",function(){return this.message||this.detailMessage||this.toString()});c(c$,"getLocalizedMessage",function(){return this.getMessage()});c(c$,"getCause",function(){return this.cause===this?null:this.cause});c(c$,"initCause",function(a){if(this.cause!==this)throw new IllegalStateException("Can't overwrite cause");if(a===this)throw new IllegalArgumentException("Self-causation not permitted");this.cause=a;return this},
"Throwable");j(c$,"toString",function(){var a=this.getClass().getName(),b=this.message||this.detailMessage;return b?a+": "+b:a});c(c$,"printStackTrace",function(){System.err.println(this.getStackTrace?this.getStackTrace():this.message+" "+ka())});c(c$,"getStackTrace",function(){for(var a=""+this+"\n",b=0;b<this.stackTrace.length;b++){var d=this.stackTrace[b],f=d.methodName.indexOf("(");if("construct"!=d.methodName.substring(0,f).replace(/\s+/g,"")||null==d.nativeClazz||0>na(d.nativeClazz,Throwable))a+=
d+"\n"}return a});c(c$,"printStackTrace",function(){this.printStackTrace()},"java.io.PrintStream");c(c$,"printStackTrace",function(){this.printStackTrace()},"java.io.PrintWriter");c(c$,"fillInStackTrace",function(){this.stackTrace=[];for(var b=arguments.callee.caller,d=null,f=[],c=a._callingStackTraces.length-1,k=!0;-1<c||null!=b;){var n=null;if(!k||b==va||b==V||null==b){if(0>c)break;k=!0;d=a._callingStackTraces[c].caller;n=a._callingStackTraces[c].owner;c--}else d=b,null!=d.claxxOwner?n=d.claxxOwner:
null!=d.exClazz&&(n=d.exClazz);b=new StackTraceElement(null!=n&&0!=n.__CLASS_NAME__.length?n.__CLASS_NAME__:"anonymous",(null==d.exName?"anonymous":d.exName)+" ("+oa(d.arguments)+")",null,-1);b.nativeClazz=n;this.stackTrace[this.stackTrace.length]=b;for(n=0;n<f.length;n++)f[n]==d&&(b=new StackTraceElement("lost","missing",null,-3),b.nativeClazz=null,this.stackTrace[this.stackTrace.length]=b,k=!1);null!=d&&(f[f.length]=d);b=d.arguments.callee.caller}a._initializingException=!1;return this});c(c$,"setStackTrace",
function(a){a=a.clone();for(var b=0;b<a.length;b++)if(null==a[b])throw new NullPointerException("stackTrace["+b+"]");this.stackTrace=a},"~A");c$=s(function(){this.fileName=this.methodName=this.declaringClass=null;this.lineNumber=0;p(this,arguments)},java.lang,"StackTraceElement",null,java.io.Serializable);t(c$,function(a,b,d,f){if(null==a||null==b)throw new NullPointerException;this.declaringClass=a;this.methodName=b;this.fileName=d;this.lineNumber=f},"~S,~S,~S,~N");j(c$,"equals",function(a){if(!q(a,
StackTraceElement)||(null==this.methodName||null==a.methodName)||!this.getMethodName().equals(a.getMethodName())||!this.getClassName().equals(a.getClassName()))return!1;var b=this.getFileName();if(null==b){if(null!=a.getFileName())return!1}else if(!b.equals(a.getFileName()))return!1;return this.getLineNumber()!=a.getLineNumber()?!1:!0},"~O");c(c$,"getClassName",function(){return null==this.declaringClass?"<unknown class>":this.declaringClass});c(c$,"getFileName",function(){return this.fileName});
c(c$,"getLineNumber",function(){return this.lineNumber});c(c$,"getMethodName",function(){return null==this.methodName?"<unknown method>":this.methodName});j(c$,"hashCode",function(){return null==this.methodName?0:this.methodName.hashCode()^this.declaringClass.hashCode()});c(c$,"isNativeMethod",function(){return-2==this.lineNumber});j(c$,"toString",function(){var a=new StringBuilder(80);a.append(this.getClassName());a.append(".");a.append(this.getMethodName());if(this.isNativeMethod())a.append("(Native Method)");
else{var b=this.getFileName();if(null==b)a.append("(Unknown Source)");else{var d=this.getLineNumber();a.append("(");a.append(b);0<=d&&(a.append(":"),a.append(d));a.append(")")}}return a.toString()});TypeError.prototype.getMessage||(TypeError.prototype.getMessage=function(){return(this.message||this.toString())+(this.getStackTrace?this.getStackTrace():ka())});c$=A(java.lang,"Error",Throwable);c$=A(java.lang,"LinkageError",Error);c$=A(java.lang,"IncompatibleClassChangeError",LinkageError);c$=A(java.lang,
"AbstractMethodError",IncompatibleClassChangeError);c$=A(java.lang,"AssertionError",Error);t(c$,function(a){K(this,AssertionError,[String.valueOf(a),q(a,Throwable)?a:null])},"~O");t(c$,function(a){this.construct(""+a)},"~B");t(c$,function(a){this.construct(""+a)},"~N");c$=A(java.lang,"ClassCircularityError",LinkageError);c$=A(java.lang,"ClassFormatError",LinkageError);c$=s(function(){this.exception=null;p(this,arguments)},java.lang,"ExceptionInInitializerError",LinkageError);t(c$,function(){K(this,
ExceptionInInitializerError);this.initCause(null)});t(c$,function(a){K(this,ExceptionInInitializerError,[a]);this.initCause(null)},"~S");t(c$,function(a){K(this,ExceptionInInitializerError);this.exception=a;this.initCause(a)},"Throwable");c(c$,"getException",function(){return this.exception});j(c$,"getCause",function(){return this.exception});c$=A(java.lang,"IllegalAccessError",IncompatibleClassChangeError);c$=A(java.lang,"InstantiationError",IncompatibleClassChangeError);c$=A(java.lang,"VirtualMachineError",
Error);c$=A(java.lang,"InternalError",VirtualMachineError);c$=A(java.lang,"NoClassDefFoundError",LinkageError);c$=A(java.lang,"NoSuchFieldError",IncompatibleClassChangeError);c$=A(java.lang,"NoSuchMethodError",IncompatibleClassChangeError);c$=A(java.lang,"OutOfMemoryError",VirtualMachineError);c$=A(java.lang,"StackOverflowError",VirtualMachineError);c$=A(java.lang,"UnknownError",VirtualMachineError);c$=A(java.lang,"UnsatisfiedLinkError",LinkageError);c$=A(java.lang,"UnsupportedClassVersionError",
ClassFormatError);c$=A(java.lang,"VerifyError",LinkageError);c$=A(java.lang,"ThreadDeath",Error);t(c$,function(){K(this,ThreadDeath,[])});c$=A(java.lang,"Exception",Throwable);c$=A(java.lang,"RuntimeException",Exception);c$=A(java.lang,"ArithmeticException",RuntimeException);c$=A(java.lang,"IndexOutOfBoundsException",RuntimeException);c$=A(java.lang,"ArrayIndexOutOfBoundsException",IndexOutOfBoundsException);t(c$,function(a){K(this,ArrayIndexOutOfBoundsException,["Array index out of range: "+a])},
"~N");c$=A(java.lang,"ArrayStoreException",RuntimeException);c$=A(java.lang,"ClassCastException",RuntimeException);c$=s(function(){this.ex=null;p(this,arguments)},java.lang,"ClassNotFoundException",Exception);t(c$,function(){K(this,ClassNotFoundException,[Z("Throwable")])});t(c$,function(a){K(this,ClassNotFoundException,[a,null])},"~S");t(c$,function(a,b){K(this,ClassNotFoundException,[a]);this.ex=b},"~S,Throwable");c(c$,"getException",function(){return this.ex});j(c$,"getCause",function(){return this.ex});
c$=A(java.lang,"CloneNotSupportedException",Exception);c$=A(java.lang,"IllegalAccessException",Exception);c$=A(java.lang,"IllegalArgumentException",RuntimeException);t(c$,function(a){K(this,IllegalArgumentException,[null==a?null:a.toString(),a])},"Throwable");c$=A(java.lang,"IllegalMonitorStateException",RuntimeException);c$=A(java.lang,"IllegalStateException",RuntimeException);t(c$,function(a){K(this,IllegalStateException,[null==a?null:a.toString(),a])},"Throwable");c$=A(java.lang,"IllegalThreadStateException",
IllegalArgumentException);c$=A(java.lang,"InstantiationException",Exception);c$=A(java.lang,"InterruptedException",Exception);c$=A(java.lang,"NegativeArraySizeException",RuntimeException);c$=A(java.lang,"NoSuchFieldException",Exception);c$=A(java.lang,"NoSuchMethodException",Exception);c$=A(java.lang,"NullPointerException",RuntimeException);c$=A(java.lang,"NumberFormatException",IllegalArgumentException);c$=A(java.lang,"SecurityException",RuntimeException);t(c$,function(a){K(this,SecurityException,
[null==a?null:a.toString(),a])},"Throwable");c$=A(java.lang,"StringIndexOutOfBoundsException",IndexOutOfBoundsException);t(c$,function(a){K(this,StringIndexOutOfBoundsException,["String index out of range: "+a])},"~N");c$=A(java.lang,"UnsupportedOperationException",RuntimeException);t(c$,function(){K(this,UnsupportedOperationException,[])});t(c$,function(a){K(this,UnsupportedOperationException,[null==a?null:a.toString(),a])},"Throwable");c$=s(function(){this.target=null;p(this,arguments)},java.lang.reflect,
"InvocationTargetException",Exception);t(c$,function(){K(this,java.lang.reflect.InvocationTargetException,[Z("Throwable")])});t(c$,function(a){K(this,java.lang.reflect.InvocationTargetException,[null,a]);this.target=a},"Throwable");t(c$,function(a,b){K(this,java.lang.reflect.InvocationTargetException,[b,a]);this.target=a},"Throwable,~S");c(c$,"getTargetException",function(){return this.target});j(c$,"getCause",function(){return this.target});c$=s(function(){this.undeclaredThrowable=null;p(this,arguments)},
java.lang.reflect,"UndeclaredThrowableException",RuntimeException);t(c$,function(a){K(this,java.lang.reflect.UndeclaredThrowableException);this.undeclaredThrowable=a;this.initCause(a)},"Throwable");t(c$,function(a,b){K(this,java.lang.reflect.UndeclaredThrowableException,[b]);this.undeclaredThrowable=a;this.initCause(a)},"Throwable,~S");c(c$,"getUndeclaredThrowable",function(){return this.undeclaredThrowable});j(c$,"getCause",function(){return this.undeclaredThrowable});c$=A(java.io,"IOException",
Exception);c$=A(java.io,"CharConversionException",java.io.IOException);c$=A(java.io,"EOFException",java.io.IOException);c$=A(java.io,"FileNotFoundException",java.io.IOException);c$=s(function(){this.bytesTransferred=0;p(this,arguments)},java.io,"InterruptedIOException",java.io.IOException);c$=A(java.io,"ObjectStreamException",java.io.IOException);c$=s(function(){this.classname=null;p(this,arguments)},java.io,"InvalidClassException",java.io.ObjectStreamException);t(c$,function(a,b){K(this,java.io.InvalidClassException,
[b]);this.classname=a},"~S,~S");c(c$,"getMessage",function(){var a=V(this,java.io.InvalidClassException,"getMessage",[]);null!=this.classname&&(a=this.classname+"; "+a);return a});c$=A(java.io,"InvalidObjectException",java.io.ObjectStreamException);c$=A(java.io,"NotActiveException",java.io.ObjectStreamException);c$=A(java.io,"NotSerializableException",java.io.ObjectStreamException);c$=s(function(){this.eof=!1;this.length=0;p(this,arguments)},java.io,"OptionalDataException",java.io.ObjectStreamException);
c$=A(java.io,"StreamCorruptedException",java.io.ObjectStreamException);c$=A(java.io,"SyncFailedException",java.io.IOException);c$=A(java.io,"UnsupportedEncodingException",java.io.IOException);c$=A(java.io,"UTFDataFormatException",java.io.IOException);c$=s(function(){this.detail=null;p(this,arguments)},java.io,"WriteAbortedException",java.io.ObjectStreamException);t(c$,function(a,b){K(this,java.io.WriteAbortedException,[a]);this.detail=b;this.initCause(b)},"~S,Exception");c(c$,"getMessage",function(){var a=
V(this,java.io.WriteAbortedException,"getMessage",[]);return this.detail?a+"; "+this.detail.toString():a});j(c$,"getCause",function(){return this.detail});c$=A(b,"ConcurrentModificationException",RuntimeException);t(c$,function(){K(this,b.ConcurrentModificationException,[])});c$=A(b,"EmptyStackException",RuntimeException);c$=s(function(){this.key=this.className=null;p(this,arguments)},b,"MissingResourceException",RuntimeException);t(c$,function(a,d,f){K(this,b.MissingResourceException,[a]);this.className=
d;this.key=f},"~S,~S,~S");c(c$,"getClassName",function(){return this.className});c(c$,"getKey",function(){return this.key});c$=A(b,"NoSuchElementException",RuntimeException);c$=A(b,"TooManyListenersException",Exception);c$=A(java.lang,"Void");C(c$,"TYPE",null);java.lang.Void.TYPE=java.lang.Void;H(java.lang.reflect,"GenericDeclaration");H(java.lang.reflect,"AnnotatedElement");c$=A(java.lang.reflect,"AccessibleObject",null,java.lang.reflect.AnnotatedElement);t(c$,function(){});c(c$,"isAccessible",function(){return!1});
c$.setAccessible=c(c$,"setAccessible",function(){},"~A,~B");c(c$,"setAccessible",function(){},"~B");j(c$,"isAnnotationPresent",function(){return!1},"Class");j(c$,"getDeclaredAnnotations",function(){return[]});j(c$,"getAnnotations",function(){return[]});j(c$,"getAnnotation",function(){return null},"Class");c$.marshallArguments=c(c$,"marshallArguments",function(){return null},"~A,~A");c(c$,"invokeV",function(){},"~O,~A");c(c$,"invokeL",function(){return null},"~O,~A");c(c$,"invokeI",function(){return 0},
"~O,~A");c(c$,"invokeJ",function(){return 0},"~O,~A");c(c$,"invokeF",function(){return 0},"~O,~A");c(c$,"invokeD",function(){return 0},"~O,~A");c$.emptyArgs=c$.prototype.emptyArgs=[];H(java.lang.reflect,"InvocationHandler");c$=H(java.lang.reflect,"Member");C(c$,"PUBLIC",0,"DECLARED",1);c$=A(java.lang.reflect,"Modifier");t(c$,function(){});c$.isAbstract=c(c$,"isAbstract",function(a){return 0!=(a&1024)},"~N");c$.isFinal=c(c$,"isFinal",function(a){return 0!=(a&16)},"~N");c$.isInterface=c(c$,"isInterface",
function(a){return 0!=(a&512)},"~N");c$.isNative=c(c$,"isNative",function(a){return 0!=(a&256)},"~N");c$.isPrivate=c(c$,"isPrivate",function(a){return 0!=(a&2)},"~N");c$.isProtected=c(c$,"isProtected",function(a){return 0!=(a&4)},"~N");c$.isPublic=c(c$,"isPublic",function(a){return 0!=(a&1)},"~N");c$.isStatic=c(c$,"isStatic",function(a){return 0!=(a&8)},"~N");c$.isStrict=c(c$,"isStrict",function(a){return 0!=(a&2048)},"~N");c$.isSynchronized=c(c$,"isSynchronized",function(a){return 0!=(a&32)},"~N");
c$.isTransient=c(c$,"isTransient",function(a){return 0!=(a&128)},"~N");c$.isVolatile=c(c$,"isVolatile",function(a){return 0!=(a&64)},"~N");c$.toString=c(c$,"toString",function(a){var b=[];java.lang.reflect.Modifier.isPublic(a)&&(b[b.length]="public");java.lang.reflect.Modifier.isProtected(a)&&(b[b.length]="protected");java.lang.reflect.Modifier.isPrivate(a)&&(b[b.length]="private");java.lang.reflect.Modifier.isAbstract(a)&&(b[b.length]="abstract");java.lang.reflect.Modifier.isStatic(a)&&(b[b.length]=
"static");java.lang.reflect.Modifier.isFinal(a)&&(b[b.length]="final");java.lang.reflect.Modifier.isTransient(a)&&(b[b.length]="transient");java.lang.reflect.Modifier.isVolatile(a)&&(b[b.length]="volatile");java.lang.reflect.Modifier.isSynchronized(a)&&(b[b.length]="synchronized");java.lang.reflect.Modifier.isNative(a)&&(b[b.length]="native");java.lang.reflect.Modifier.isStrict(a)&&(b[b.length]="strictfp");java.lang.reflect.Modifier.isInterface(a)&&(b[b.length]="interface");return 0<b.length?b.join(" "):
""},"~N");C(c$,"PUBLIC",1,"PRIVATE",2,"PROTECTED",4,"STATIC",8,"FINAL",16,"SYNCHRONIZED",32,"VOLATILE",64,"TRANSIENT",128,"NATIVE",256,"INTERFACE",512,"ABSTRACT",1024,"STRICT",2048,"BRIDGE",64,"VARARGS",128,"SYNTHETIC",4096,"ANNOTATION",8192,"ENUM",16384);c$=s(function(){this.exceptionTypes=this.parameterTypes=this.clazz=null;this.modifiers=0;p(this,arguments)},java.lang.reflect,"Constructor",java.lang.reflect.AccessibleObject,[java.lang.reflect.GenericDeclaration,java.lang.reflect.Member]);t(c$,
function(a,b,d,f){K(this,java.lang.reflect.Constructor,[]);this.clazz=a;this.parameterTypes=b;this.exceptionTypes=d;this.modifiers=f},"Class,~A,~A,~N");j(c$,"getTypeParameters",function(){return null});c(c$,"toGenericString",function(){return null});c(c$,"getGenericParameterTypes",function(){return null});c(c$,"getGenericExceptionTypes",function(){return null});c(c$,"getParameterAnnotations",function(){return null});c(c$,"isVarArgs",function(){return!1});j(c$,"isSynthetic",function(){return!1});j(c$,
"equals",function(a){if(null!=a&&q(a,java.lang.reflect.Constructor)&&this.getDeclaringClass()===a.getDeclaringClass()){var b=this.parameterTypes;a=a.parameterTypes;if(b.length==a.length){for(var d=0;d<b.length;d++)if(b[d]!==a[d])return!1;return!0}}return!1},"~O");j(c$,"getDeclaringClass",function(){return this.clazz});c(c$,"getExceptionTypes",function(){return this.exceptionTypes});j(c$,"getModifiers",function(){return this.modifiers});j(c$,"getName",function(){return this.getDeclaringClass().getName()});
c(c$,"getParameterTypes",function(){return this.parameterTypes});j(c$,"hashCode",function(){return this.getDeclaringClass().getName().hashCode()});c(c$,"newInstance",function(a){var b=new this.clazz(wa);p(b,a);return b},"~A");j(c$,"toString",function(){return null});c$=A(java.lang.reflect,"Field",java.lang.reflect.AccessibleObject,java.lang.reflect.Member);j(c$,"isSynthetic",function(){return!1});c(c$,"toGenericString",function(){return null});c(c$,"isEnumConstant",function(){return!1});c(c$,"getGenericType",
function(){return null});j(c$,"equals",function(){return!1},"~O");j(c$,"getDeclaringClass",function(){return null});j(c$,"getName",function(){return null});c(c$,"getType",function(){return null});j(c$,"hashCode",function(){return 0});j(c$,"toString",function(){return null});c$=s(function(){this.exceptionTypes=this.parameterTypes=this.returnType=this.name=this.clazz=null;this.modifiers=0;p(this,arguments)},java.lang.reflect,"Method",java.lang.reflect.AccessibleObject,[java.lang.reflect.GenericDeclaration,
java.lang.reflect.Member]);t(c$,function(a,b,d,f,c,n){K(this,java.lang.reflect.Method,[]);this.clazz=a;this.name=b;this.parameterTypes=d;this.returnType=f;this.exceptionTypes=c;this.modifiers=n},"Class,~S,~A,Class,~A,~N");j(c$,"getTypeParameters",function(){return null});c(c$,"toGenericString",function(){return null});c(c$,"getGenericParameterTypes",function(){return null});c(c$,"getGenericExceptionTypes",function(){return null});c(c$,"getGenericReturnType",function(){return null});c(c$,"getParameterAnnotations",
function(){return null});c(c$,"isVarArgs",function(){return!1});c(c$,"isBridge",function(){return!1});j(c$,"isSynthetic",function(){return!1});c(c$,"getDefaultValue",function(){return null});j(c$,"equals",function(a){if(null!=a&&q(a,java.lang.reflect.Method)&&this.getDeclaringClass()===a.getDeclaringClass()&&this.getName()===a.getName()){var b=this.parameterTypes;a=a.parameterTypes;if(b.length==a.length){for(var d=0;d<b.length;d++)if(b[d]!==a[d])return!1;return!0}}return!1},"~O");j(c$,"getDeclaringClass",
function(){return this.clazz});c(c$,"getExceptionTypes",function(){return this.exceptionTypes});j(c$,"getModifiers",function(){return this.modifiers});j(c$,"getName",function(){return this.name});c(c$,"getParameterTypes",function(){return this.parameterTypes});c(c$,"getReturnType",function(){return this.returnType});j(c$,"hashCode",function(){return this.getDeclaringClass().getName().hashCode()^this.getName().hashCode()});c(c$,"invoke",function(a,b){var d=this.clazz.prototype[this.getName()];null==
d&&(d=this.clazz[this.getName()]);null!=d&&d.apply(a,b)},"~O,~A");j(c$,"toString",function(){return null})})(ca);(function(){Jmol._debugCode||(v(null,"java.lang.AbstractStringBuilder","java.io.InvalidObjectException java.lang.ArrayIndexOutOfBoundsException $.IndexOutOfBoundsException $.NegativeArraySizeException $.NullPointerException $.StringIndexOutOfBoundsException".split(" "),function(){c$=s(function(){this.value=null;this.count=0;this.shared=!1;p(this,arguments)},java.lang,"AbstractStringBuilder");
c(c$,"getValue",function(){return this.value});c(c$,"shareValue",function(){this.shared=!0;return this.value});c(c$,"set",function(a,b){null==a&&(a=P(0,"\x00"));if(a.length<b)throw new java.io.InvalidObjectException("K0199");this.shared=!1;this.value=a;this.count=b},"~A,~N");t(c$,function(){this.value=P(16,"\x00")});t(c$,function(a){if(0>a)throw new NegativeArraySizeException;this.value=P(a,"\x00")},"~N");t(c$,function(a){this.count=a.length;this.shared=!1;this.value=P(this.count+16,"\x00");a.getChars(0,
this.count,this.value,0)},"~S");c(c$,"enlargeBuffer",($fz=function(a){var b=(this.value.length<<1)+2;a=P(a>b?a:b,"\x00");System.arraycopy(this.value,0,a,0,this.count);this.value=a;this.shared=!1},$fz.isPrivate=!0,$fz),"~N");c(c$,"appendNull",function(){var a=this.count+4;a>this.value.length?this.enlargeBuffer(a):this.shared&&(this.value=this.value.clone(),this.shared=!1);this.value[this.count++]="n";this.value[this.count++]="u";this.value[this.count++]="l";this.value[this.count++]="l"});c(c$,"append0",
function(a){var b=this.count+a.length;b>this.value.length?this.enlargeBuffer(b):this.shared&&(this.value=this.value.clone(),this.shared=!1);System.arraycopy(a,0,this.value,this.count,a.length);this.count=b},"~A");c(c$,"append0",function(a,b,d){if(null==a)throw new NullPointerException;if(0<=b&&0<=d&&d<=a.length-b){var f=this.count+d;f>this.value.length?this.enlargeBuffer(f):this.shared&&(this.value=this.value.clone(),this.shared=!1);System.arraycopy(a,b,this.value,this.count,d);this.count=f}else throw new ArrayIndexOutOfBoundsException;
},"~A,~N,~N");c(c$,"append0",function(a){this.count==this.value.length&&this.enlargeBuffer(this.count+1);this.shared&&(this.value=this.value.clone(),this.shared=!1);this.value[this.count++]=a},"~N");c(c$,"append0",function(a){if(null==a)this.appendNull();else{var b=a.length,d=this.count+b;d>this.value.length?this.enlargeBuffer(d):this.shared&&(this.value=this.value.clone(),this.shared=!1);a.getChars(0,b,this.value,this.count);this.count=d}},"~S");c(c$,"append0",function(a,b,d){null==a&&(a="null");
if(0>b||0>d||b>d||d>a.length())throw new IndexOutOfBoundsException;this.append0(a.subSequence(b,d).toString())},"CharSequence,~N,~N");c(c$,"capacity",function(){return this.value.length});c(c$,"charAt",function(a){if(0>a||a>=this.count)throw new StringIndexOutOfBoundsException(a);return this.value[a]},"~N");c(c$,"delete0",function(a,b){if(0<=a){b>this.count&&(b=this.count);if(b==a)return;if(b>a){var d=this.count-b;if(0<d)if(this.shared){var f=P(this.value.length,"\x00");System.arraycopy(this.value,
0,f,0,a);System.arraycopy(this.value,b,f,a,d);this.value=f;this.shared=!1}else System.arraycopy(this.value,b,this.value,a,d);this.count-=b-a;return}}throw new StringIndexOutOfBoundsException;},"~N,~N");c(c$,"deleteCharAt0",function(a){if(0>a||a>=this.count)throw new StringIndexOutOfBoundsException(a);var b=this.count-a-1;if(0<b)if(this.shared){var d=P(this.value.length,"\x00");System.arraycopy(this.value,0,d,0,a);System.arraycopy(this.value,a+1,d,a,b);this.value=d;this.shared=!1}else System.arraycopy(this.value,
a+1,this.value,a,b);this.count--},"~N");c(c$,"ensureCapacity",function(a){a>this.value.length&&this.enlargeBuffer(a)},"~N");c(c$,"getChars",function(a,b,d,f){if(a>this.count||b>this.count||a>b)throw new StringIndexOutOfBoundsException;System.arraycopy(this.value,a,d,f,b-a)},"~N,~N,~A,~N");c(c$,"insert0",function(a,b){if(0>a||a>this.count)throw new StringIndexOutOfBoundsException(a);0!=b.length&&(this.move(b.length,a),System.arraycopy(b,0,this.value,a,b.length),this.count+=b.length)},"~N,~A");c(c$,
"insert0",function(a,b,d,f){if(0<=a&&a<=this.count){if(0<=d&&0<=f&&f<=b.length-d){0!=f&&(this.move(f,a),System.arraycopy(b,d,this.value,a,f),this.count+=f);return}throw new StringIndexOutOfBoundsException("offset "+d+", len "+f+", array.length "+b.length);}throw new StringIndexOutOfBoundsException(a);},"~N,~A,~N,~N");c(c$,"insert0",function(a,b){if(0>a||a>this.count)throw new ArrayIndexOutOfBoundsException(a);this.move(1,a);this.value[a]=b;this.count++},"~N,~N");c(c$,"insert0",function(a,b){if(0<=
a&&a<=this.count){null==b&&(b="null");var d=b.length;0!=d&&(this.move(d,a),b.getChars(0,d,this.value,a),this.count+=d)}else throw new StringIndexOutOfBoundsException(a);},"~N,~S");c(c$,"insert0",function(a,b,d,f){null==b&&(b="null");if(0>a||a>this.count||0>d||0>f||d>f||f>b.length())throw new IndexOutOfBoundsException;this.insert0(a,b.subSequence(d,f).toString())},"~N,CharSequence,~N,~N");c(c$,"length",function(){return this.count});c(c$,"move",($fz=function(a,b){var d;if(this.value.length-this.count>=
a){if(!this.shared){System.arraycopy(this.value,b,this.value,b+a,this.count-b);return}d=this.value.length}else{d=this.count+a;var f=(this.value.length<<1)+2;d=d>f?d:f}d=P(d,"\x00");System.arraycopy(this.value,0,d,0,b);System.arraycopy(this.value,b,d,b+a,this.count-b);this.value=d;this.shared=!1},$fz.isPrivate=!0,$fz),"~N,~N");c(c$,"replace0",function(a,b,d){if(0<=a){b>this.count&&(b=this.count);if(b>a){var f=d.length,c=b-a-f;if(0<c)if(this.shared){var e=P(this.value.length,"\x00");System.arraycopy(this.value,
0,e,0,a);System.arraycopy(this.value,b,e,a+f,this.count-b);this.value=e;this.shared=!1}else System.arraycopy(this.value,b,this.value,a+f,this.count-b);else 0>c?this.move(-c,b):this.shared&&(this.value=this.value.clone(),this.shared=!1);d.getChars(0,f,this.value,a);this.count-=c;return}if(a==b){if(null==d)throw new NullPointerException;this.insert0(a,d);return}}throw new StringIndexOutOfBoundsException;},"~N,~N,~S");c(c$,"reverse0",function(){if(!(2>this.count))if(this.shared){for(var a=P(this.value.length,
"\x00"),b=0,d=this.count;b<this.count;b++)a[--d]=this.value[b];this.value=a;this.shared=!1}else for(var b=0,d=this.count,a=Math.floor(this.count/2);b<a;b++){var f=this.value[--d];this.value[d]=this.value[b];this.value[b]=f}});c(c$,"setCharAt",function(a,b){if(0>a||a>=this.count)throw new StringIndexOutOfBoundsException(a);this.shared&&(this.value=this.value.clone(),this.shared=!1);this.value[a]=b},"~N,~N");c(c$,"setLength",function(a){if(0>a)throw new StringIndexOutOfBoundsException(a);if(this.count<
a)if(a>this.value.length)this.enlargeBuffer(a);else if(this.shared){var b=P(this.value.length,"\x00");System.arraycopy(this.value,0,b,0,this.count);this.value=b;this.shared=!1}else for(b=this.count;b<a;b++)this.value[b]=String.fromCharCode(0);this.count=a},"~N");c(c$,"substring",function(a){if(0<=a&&a<=this.count){if(a==this.count)return"";this.shared=!0;return String.instantialize(a,this.count-a,this.value)}throw new StringIndexOutOfBoundsException(a);},"~N");c(c$,"substring",function(a,b){if(0<=
a&&a<=b&&b<=this.count){if(a==b)return"";this.shared=!0;return String.instantialize(this.value,a,b-a)}throw new StringIndexOutOfBoundsException;},"~N,~N");j(c$,"toString",function(){if(0==this.count)return"";if(256<=this.count&&this.count<=this.value.length>>1)return String.instantialize(this.value,0,this.count);this.shared=!0;return String.instantialize(0,this.count,this.value)});c(c$,"subSequence",function(a,b){return this.substring(a,b)},"~N,~N");c(c$,"indexOf",function(a){return this.indexOf(a,
0)},"~S");c(c$,"indexOf",function(a,b){0>b&&(b=0);var d=a.length;if(0<d){if(d+b>this.count)return-1;for(var f=a.charAt(0);;){for(var c=b,e=!1;c<this.count;c++)if(this.value[c].charCodeAt(0)==f.charCodeAt(0)){e=!0;break}if(!e||d+c>this.count)return-1;for(var e=c,h=0;++h<d&&this.value[++e].charCodeAt(0)==a.charAt(h).charCodeAt(0););if(h==d)return c;b=c+1}}return b<this.count||0==b?b:this.count},"~S,~N");c(c$,"lastIndexOf",function(a){return this.lastIndexOf(a,this.count)},"~S");c(c$,"lastIndexOf",function(a,
b){var d=a.length;if(d<=this.count&&0<=b){if(0<d){b>this.count-d&&(b=this.count-d);for(var f=a.charAt(0);;){for(var c=b,e=!1;0<=c;--c)if(this.value[c].charCodeAt(0)==f.charCodeAt(0)){e=!0;break}if(!e)return-1;for(var e=c,h=0;++h<d&&this.value[++e].charCodeAt(0)==a.charAt(h).charCodeAt(0););if(h==d)return c;b=c-1}}return b<this.count?b:this.count}return-1},"~S,~N");c(c$,"trimToSize",function(){if(this.count<this.value.length){var a=P(this.count,"\x00");System.arraycopy(this.value,0,a,0,this.count);
this.value=a;this.shared=!1}});C(c$,"INITIAL_CAPACITY",16)}),v(null,"java.lang.Enum",["java.lang.CloneNotSupportedException","$.IllegalArgumentException","$.NullPointerException"],function(){c$=s(function(){this.$name=null;this.$ordinal=0;p(this,arguments)},java.lang,"Enum",null,[java.io.Serializable,Comparable]);t(c$,function(a,b){this.$name=a;this.$ordinal=b},"~S,~N");c(c$,"name",function(){return this.$name});c(c$,"ordinal",function(){return this.$ordinal});j(c$,"toString",function(){return this.$name});
j(c$,"equals",function(a){return this===a},"~O");j(c$,"hashCode",function(){return this.$ordinal+(null==this.$name?0:this.$name.hashCode())});j(c$,"clone",function(){throw new CloneNotSupportedException("KA004");});j(c$,"compareTo",function(a){return this.$ordinal-a.$ordinal},"~O");c(c$,"getDeclaringClass",function(){var a=this.getClass(),b=a.getSuperclass();return Enum===b?a:b});c$.$valueOf=c(c$,"$valueOf",function(a,b){if(null==a||null==b)throw new NullPointerException("KA001");var d=Enum.getValues(a);
if(null==d)throw new IllegalArgumentException("KA005");for(var f,c=0;c<d.length&&((f=d[c])||1);c++)if(f.$name.equals(b))return f;throw new IllegalArgumentException("KA006");},"Class,~S");c$.getValues=c(c$,"getValues",function(a){return a.values()},"Class")}),v(["java.lang.AbstractStringBuilder","$.Appendable"],"java.lang.StringBuffer",["java.lang.Character","$.Double","$.Float","$.Long"],function(){c$=A(java.lang,"StringBuffer",AbstractStringBuilder,[Appendable,java.io.Serializable,CharSequence]);
t(c$,function(a){if(null==a)throw new NullPointerException;K(this,StringBuffer,[a.toString()])},"CharSequence");c(c$,"append",function(a){return this.append(a?"true":"false")},"~B");c(c$,"append",function(a){this.append0(a);return this},"~N");c(c$,"append",function(a){return this.append(Double.toString(a))},"~N");c(c$,"append",function(a){null==a?this.appendNull():this.append0(a.toString());return this},"~O");c(c$,"append",function(a){this.append0(a);return this},"~S");c(c$,"append",function(a){null==
a?this.appendNull():this.append0(a.getValue(),0,a.length());return this},"StringBuffer");c(c$,"append",function(a){this.append0(a);return this},"~A");c(c$,"append",function(a,b,d){this.append0(a,b,d);return this},"~A,~N,~N");c(c$,"append",function(a){null==a?this.appendNull():this.append0(a.toString());return this},"CharSequence");c(c$,"append",function(a,b,d){this.append0(a,b,d);return this},"CharSequence,~N,~N");c(c$,"appendCodePoint",function(a){return this.append(Character.toChars(a))},"~N");
c(c$,"$delete",function(a,b){this.delete0(a,b);return this},"~N,~N");c(c$,"deleteCharAt",function(a){this.deleteCharAt0(a);return this},"~N");c(c$,"insert",function(a,b){this.insert0(a,b);return this},"~N,~N");c(c$,"insert",function(a,b){return this.insert(a,b?"true":"false")},"~N,~B");c(c$,"insert",function(a,b){return this.insert(a,Integer.toString(b))},"~N,~N");c(c$,"insert",function(a,b){return this.insert(a,Long.toString(b))},"~N,~N");c(c$,"insert",function(a,b){return this.insert(a,Double.toString(b))},
"~N,~N");c(c$,"insert",function(a,b){return this.insert(a,Float.toString(b))},"~N,~N");c(c$,"insert",function(a,b){return this.insert(a,null==b?"null":b.toString())},"~N,~O");c(c$,"insert",function(a,b){this.insert0(a,b);return this},"~N,~S");c(c$,"insert",function(a,b){this.insert0(a,b);return this},"~N,~A");c(c$,"insert",function(a,b,d,f){this.insert0(a,b,d,f);return this},"~N,~A,~N,~N");c(c$,"insert",function(a,b){this.insert0(a,null==b?"null":b.toString());return this},"~N,CharSequence");c(c$,
"insert",function(a,b,d,f){this.insert0(a,b,d,f);return this},"~N,CharSequence,~N,~N");c(c$,"replace",function(a,b,d){this.replace0(a,b,d);return this},"~N,~N,~S");c(c$,"reverse",function(){this.reverse0();return this});j(c$,"subSequence",function(a,b){return V(this,StringBuffer,"substring",[a,b])},"~N,~N")}),v(["java.lang.AbstractStringBuilder","$.Appendable"],"java.lang.StringBuilder",["java.lang.Double","$.Float","$.Long"],function(){c$=A(java.lang,"StringBuilder",AbstractStringBuilder,[Appendable,
CharSequence,java.io.Serializable]);t(c$,function(a){K(this,StringBuilder,[a.toString()])},"CharSequence");c(c$,"append",function(a){this.append0(a?"true":"false");return this},"~B");c(c$,"append",function(a){this.append0(a);return this},"~N");c(c$,"append",function(a){this.append0(Integer.toString(a));return this},"~N");c(c$,"append",function(a){this.append0(Long.toString(a));return this},"~N");c(c$,"append",function(a){this.append0(Float.toString(a));return this},"~N");c(c$,"append",function(a){this.append0(Double.toString(a));
return this},"~N");c(c$,"append",function(a){null==a?this.appendNull():this.append0(a.toString());return this},"~O");c(c$,"append",function(a){this.append0(a);return this},"~S");c(c$,"append",function(a){null==a?this.appendNull():this.append0(a.getValue(),0,a.length());return this},"StringBuffer");c(c$,"append",function(a){this.append0(a);return this},"~A");c(c$,"append",function(a,b,d){this.append0(a,b,d);return this},"~A,~N,~N");c(c$,"append",function(a){null==a?this.appendNull():this.append0(a.toString());
return this},"CharSequence");c(c$,"append",function(a,b,d){this.append0(a,b,d);return this},"CharSequence,~N,~N");c(c$,"$delete",function(a,b){this.delete0(a,b);return this},"~N,~N");c(c$,"deleteCharAt",function(a){this.deleteCharAt0(a);return this},"~N");c(c$,"insert",function(a,b){this.insert0(a,b?"true":"false");return this},"~N,~B");c(c$,"insert",function(a,b){this.insert0(a,b);return this},"~N,~N");c(c$,"insert",function(a,b){this.insert0(a,Integer.toString(b));return this},"~N,~N");c(c$,"insert",
function(a,b){this.insert0(a,Long.toString(b));return this},"~N,~N");c(c$,"insert",function(a,b){this.insert0(a,Float.toString(b));return this},"~N,~N");c(c$,"insert",function(a,b){this.insert0(a,Double.toString(b));return this},"~N,~N");c(c$,"insert",function(a,b){this.insert0(a,null==b?"null":b.toString());return this},"~N,~O");c(c$,"insert",function(a,b){this.insert0(a,b);return this},"~N,~S");c(c$,"insert",function(a,b){this.insert0(a,b);return this},"~N,~A");c(c$,"insert",function(a,b,d,f){this.insert0(a,
b,d,f);return this},"~N,~A,~N,~N");c(c$,"insert",function(a,b){this.insert0(a,null==b?"null":b.toString());return this},"~N,CharSequence");c(c$,"insert",function(a,b,d,f){this.insert0(a,b,d,f);return this},"~N,CharSequence,~N,~N");c(c$,"replace",function(a,b,d){this.replace0(a,b,d);return this},"~N,~N,~S");c(c$,"reverse",function(){this.reverse0();return this})}),v(null,"java.lang.Thread",["java.lang.IllegalArgumentException","$.ThreadGroup","java.util.Date"],function(){c$=s(function(){this.name=
this.group=this.target=null;this.priority=0;p(this,arguments)},java.lang,"Thread",null,Runnable);c$.currentThread=c(c$,"currentThread",function(){null==Thread.J2S_THREAD&&(Thread.J2S_THREAD=new Thread,Thread.prototype.J2S_THREAD=Thread.J2S_THREAD);return Thread.J2S_THREAD});c$.sleep=c(c$,"sleep",function(){xa("Thread.sleep is not implemented in Java2Script!")},"~N");t(c$,function(){});t(c$,function(a){this.init(null,a,"Thread-"+(new java.util.Date).getTime()+Math.random(),0)},"Runnable");t(c$,function(a,
b){this.init(a,b,"Thread-"+(new java.util.Date).getTime()+Math.random(),0)},"ThreadGroup,Runnable");t(c$,function(a){this.init(null,null,a,0)},"~S");t(c$,function(a,b){this.init(a,null,b,0)},"ThreadGroup,~S");t(c$,function(a,b){this.init(null,a,b,0)},"Runnable,~S");t(c$,function(a,b,d){this.init(a,b,d,0)},"ThreadGroup,Runnable,~S");t(c$,function(a,b,d,f){this.init(a,b,d,f)},"ThreadGroup,Runnable,~S,~N");c(c$,"init",($fz=function(a,b,d){null==a&&(a=new ThreadGroup);this.group=a;this.target=b;this.name=
d;this.priority=5},$fz.isPrivate=!0,$fz),"ThreadGroup,Runnable,~S,~N");c(c$,"start",function(){window.setTimeout(function(a){return function(){a.run()}}(this),0)});c(c$,"run",function(){null!=this.target&&this.target.run()});c(c$,"setPriority",function(a){if(10<a||1>a)throw new IllegalArgumentException;this.priority=a},"~N");c(c$,"getPriority",function(){return this.priority});c(c$,"interrupt",function(){});c(c$,"setName",function(a){this.name=a},"~S");c(c$,"getName",function(){return String.valueOf(this.name)});
c(c$,"getThreadGroup",function(){return this.group});j(c$,"toString",function(){var a=this.getThreadGroup();return null!=a?"Thread["+this.getName()+","+this.getPriority()+","+a.getName()+"]":"Thread["+this.getName()+","+this.getPriority()+",]"});C(c$,"MIN_PRIORITY",1,"NORM_PRIORITY",5,"MAX_PRIORITY",10,"J2S_THREAD",null)}),v(null,"java.lang.ThreadGroup",["java.lang.NullPointerException","$.Thread"],function(){c$=s(function(){this.name=this.parent=null;this.maxPriority=0;p(this,arguments)},java.lang,
"ThreadGroup");t(c$,function(){this.name="system";this.maxPriority=10});t(c$,function(a){this.construct(Thread.currentThread().getThreadGroup(),a)},"~S");t(c$,function(a,b){if(null==a)throw new NullPointerException;this.name=b;this.parent=a;this.maxPriority=10},"ThreadGroup,~S");c(c$,"getName",function(){return this.name});c(c$,"getParent",function(){return this.parent});c(c$,"getMaxPriority",function(){return this.maxPriority})}),v(["java.io.FilterInputStream"],"java.io.BufferedInputStream",["java.io.IOException",
"java.lang.IndexOutOfBoundsException"],function(){c$=s(function(){this.buf=null;this.pos=this.count=0;this.markpos=-1;this.marklimit=0;p(this,arguments)},java.io,"BufferedInputStream",java.io.FilterInputStream);c(c$,"getInIfOpen",function(){var a=this.$in;if(null==a)throw new java.io.IOException("Stream closed");return a});c(c$,"getBufIfOpen",function(){var a=this.buf;if(null==a)throw new java.io.IOException("Stream closed");return a});j(c$,"resetStream",function(){});t(c$,function(a){K(this,java.io.BufferedInputStream,
[a]);this.buf=Q(8192,0)},"java.io.InputStream");c(c$,"fill",function(){var a=this.getBufIfOpen();if(0>this.markpos)this.pos=0;else if(this.pos>=a.length)if(0<this.markpos){var b=this.pos-this.markpos;System.arraycopy(a,this.markpos,a,0,b);this.pos=b;this.markpos=0}else a.length>=this.marklimit?(this.markpos=-1,this.pos=0):(b=2*this.pos,b>this.marklimit&&(b=this.marklimit),b=Q(b,0),System.arraycopy(a,0,b,0,this.pos),a=this.buf=b);this.count=this.pos;a=this.getInIfOpen().read(a,this.pos,a.length-this.pos);
0<a&&(this.count=a+this.pos)});j(c$,"readByteAsInt",function(){return this.pos>=this.count&&(this.fill(),this.pos>=this.count)?-1:this.getBufIfOpen()[this.pos++]&255});c(c$,"read1",function(a,b,d){var f=this.count-this.pos;if(0>=f){if(d>=this.getBufIfOpen().length&&0>this.markpos)return this.getInIfOpen().read(a,b,d);this.fill();f=this.count-this.pos;if(0>=f)return-1}d=f<d?f:d;System.arraycopy(this.getBufIfOpen(),this.pos,a,b,d);this.pos+=d;return d},"~A,~N,~N");j(c$,"read",function(a,b,d){this.getBufIfOpen();
if(0>(b|d|b+d|a.length-(b+d)))throw new IndexOutOfBoundsException;if(0==d)return 0;for(var f=0;;){var c=this.read1(a,b+f,d-f);if(0>=c)return 0==f?c:f;f+=c;if(f>=d)return f;c=this.$in;if(null!=c&&0>=c.available())return f}},"~A,~N,~N");j(c$,"skip",function(a){this.getBufIfOpen();if(0>=a)return 0;var b=this.count-this.pos;if(0>=b){if(0>this.markpos)return this.getInIfOpen().skip(a);this.fill();b=this.count-this.pos;if(0>=b)return 0}a=b<a?b:a;this.pos+=a;return a},"~N");j(c$,"available",function(){var a=
this.count-this.pos,b=this.getInIfOpen().available();return a>2147483647-b?2147483647:a+b});j(c$,"mark",function(a){this.marklimit=a;this.markpos=this.pos},"~N");j(c$,"reset",function(){this.getBufIfOpen();if(0>this.markpos)throw new java.io.IOException("Resetting to invalid mark");this.pos=this.markpos});j(c$,"markSupported",function(){return!0});j(c$,"close",function(){var a=this.$in;this.$in=null;null!=a&&a.close()});C(c$,"DEFAULT_BUFFER_SIZE",8192)}),v(["java.io.Reader"],"java.io.BufferedReader",
["java.io.IOException","java.lang.IllegalArgumentException","$.IndexOutOfBoundsException","JU.SB"],function(){c$=s(function(){this.cb=this.$in=null;this.nextChar=this.nChars=0;this.markedChar=-1;this.readAheadLimit=0;this.markedSkipLF=this.skipLF=!1;p(this,arguments)},java.io,"BufferedReader",java.io.Reader);c(c$,"setSize",function(a){if(0>=a)throw new IllegalArgumentException("Buffer size <= 0");this.cb=fa(a,"\x00");this.nextChar=this.nChars=0},"~N");t(c$,function(a){K(this,java.io.BufferedReader,
[a]);this.$in=a;this.setSize(8192)},"java.io.Reader");c(c$,"ensureOpen",function(){if(null==this.$in)throw new java.io.IOException("Stream closed");});c(c$,"fill",function(){var a;if(-1>=this.markedChar)a=0;else{var b=this.nextChar-this.markedChar;b>=this.readAheadLimit?(this.markedChar=-2,a=this.readAheadLimit=0):(this.readAheadLimit<=this.cb.length?System.arraycopy(this.cb,this.markedChar,this.cb,0,b):(a=fa(this.readAheadLimit,"\x00"),System.arraycopy(this.cb,this.markedChar,a,0,b),this.cb=a),this.markedChar=
0,this.nextChar=this.nChars=a=b)}do b=this.$in.read(this.cb,a,this.cb.length-a);while(0==b);0<b&&(this.nChars=a+b,this.nextChar=a)});c(c$,"read1",function(a,b,d){if(this.nextChar>=this.nChars){if(d>=this.cb.length&&-1>=this.markedChar&&!this.skipLF)return this.$in.read(a,b,d);this.fill()}if(this.nextChar>=this.nChars||this.skipLF&&(this.skipLF=!1,"\n"==this.cb[this.nextChar]&&(this.nextChar++,this.nextChar>=this.nChars&&this.fill(),this.nextChar>=this.nChars)))return-1;d=Math.min(d,this.nChars-this.nextChar);
System.arraycopy(this.cb,this.nextChar,a,b,d);this.nextChar+=d;return d},"~A,~N,~N");c(c$,"read",function(a,b,d){this.ensureOpen();if(0>b||b>a.length||0>d||b+d>a.length||0>b+d)throw new IndexOutOfBoundsException;if(0==d)return 0;var f=this.read1(a,b,d);if(0>=f)return f;for(;f<d&&this.$in.ready();){var c=this.read1(a,b+f,d-f);if(0>=c)break;f+=c}return f},"~A,~N,~N");c(c$,"readLine1",function(a){var b=null,d;this.ensureOpen();for(var f=a||this.skipLF;;){this.nextChar>=this.nChars&&this.fill();if(this.nextChar>=
this.nChars)return null!=b&&0<b.length()?b.toString():null;var c=!1;a=String.fromCharCode(0);var e;f&&"\n"==this.cb[this.nextChar]&&this.nextChar++;f=this.skipLF=!1;e=this.nextChar;a:for(;e<this.nChars;e++)if(a=this.cb[e],"\n"==a||"\r"==a){c=!0;break a}d=this.nextChar;this.nextChar=e;if(c)return null==b?b=String.instantialize(this.cb,d,e-d):(b.appendCB(this.cb,d,e-d),b=b.toString()),this.nextChar++,"\r"==a&&(this.skipLF=!0),b;null==b&&(b=JU.SB.newN(80));b.appendCB(this.cb,d,e-d)}},"~B");c(c$,"readLine",
function(){return this.readLine1(!1)});j(c$,"skip",function(a){if(0>a)throw new IllegalArgumentException("skip value is negative");this.ensureOpen();for(var b=a;0<b;){this.nextChar>=this.nChars&&this.fill();if(this.nextChar>=this.nChars)break;this.skipLF&&(this.skipLF=!1,"\n"==this.cb[this.nextChar]&&this.nextChar++);var d=this.nChars-this.nextChar;if(b<=d){this.nextChar+=b;b=0;break}b-=d;this.nextChar=this.nChars}return a-b},"~N");c(c$,"ready",function(){this.ensureOpen();this.skipLF&&(this.nextChar>=
this.nChars&&this.$in.ready()&&this.fill(),this.nextChar<this.nChars&&("\n"==this.cb[this.nextChar]&&this.nextChar++,this.skipLF=!1));return this.nextChar<this.nChars||this.$in.ready()});j(c$,"markSupported",function(){return!0});j(c$,"mark",function(a){if(0>a)throw new IllegalArgumentException("Read-ahead limit < 0");this.ensureOpen();this.readAheadLimit=a;this.markedChar=this.nextChar;this.markedSkipLF=this.skipLF},"~N");j(c$,"reset",function(){this.ensureOpen();if(0>this.markedChar)throw new java.io.IOException(-2==
this.markedChar?"Mark invalid":"Stream not marked");this.nextChar=this.markedChar;this.skipLF=this.markedSkipLF});c(c$,"close",function(){null!=this.$in&&(this.$in.close(),this.cb=this.$in=null)});C(c$,"INVALIDATED",-2,"UNMARKED",-1,"DEFAULT_CHAR_BUFFER_SIZE",8192,"DEFAULT_EXPECTED_LINE_LENGTH",80)}),v(["java.io.Writer"],"java.io.BufferedWriter",["java.io.IOException","java.lang.IllegalArgumentException","$.IndexOutOfBoundsException","$.StringIndexOutOfBoundsException"],function(){c$=s(function(){this.buf=
this.out=null;this.pos=0;this.lineSeparator="\r\n";p(this,arguments)},java.io,"BufferedWriter",java.io.Writer);t(c$,function(a){K(this,java.io.BufferedWriter,[a]);this.out=a;this.buf=P(8192,"\x00")},"java.io.Writer");t(c$,function(a,b){K(this,java.io.BufferedWriter,[a]);if(0<b)this.out=a,this.buf=P(b,"\x00");else throw new IllegalArgumentException("K0058");},"java.io.Writer,~N");c(c$,"close",function(){this.isOpen()&&(this.flush(),this.out.close(),this.out=this.buf=null)});c(c$,"flush",function(){if(this.isOpen())0<
this.pos&&this.out.write(this.buf,0,this.pos),this.pos=0,this.out.flush();else throw new java.io.IOException("K005d");});c(c$,"isOpen",($fz=function(){return null!=this.out},$fz.isPrivate=!0,$fz));c(c$,"newLine",function(){this.write("\r\n",0,2)});c(c$,"write",function(a,b,d){if(!this.isOpen())throw new java.io.IOException("K005d");if(0>b||b>a.length-d||0>d)throw new IndexOutOfBoundsException;if(0==this.pos&&d>=this.buf.length)this.out.write(a,b,d);else{var f=this.buf.length-this.pos;d<f&&(f=d);0<
f&&(System.arraycopy(a,b,this.buf,this.pos,f),this.pos+=f);this.pos==this.buf.length&&(this.out.write(this.buf,0,this.buf.length),this.pos=0,d>f&&(b+=f,f=d-f,f>=this.buf.length?this.out.write(a,b,f):(System.arraycopy(a,b,this.buf,this.pos,f),this.pos+=f)))}},"~A,~N,~N");c(c$,"write",function(a){if(this.isOpen())this.pos>=this.buf.length&&(this.out.write(this.buf,0,this.buf.length),this.pos=0),this.buf[this.pos++]=String.fromCharCode(a);else throw new java.io.IOException("K005d");},"~N");c(c$,"write",
function(a,b,d){if(!this.isOpen())throw new java.io.IOException("K005d");if(!(0>=d)){if(b>a.length-d||0>b)throw new StringIndexOutOfBoundsException;if(0==this.pos&&d>=this.buf.length){var f=P(d,"\x00");a.getChars(b,b+d,f,0);this.out.write(f,0,d)}else{var c=this.buf.length-this.pos;d<c&&(c=d);0<c&&(a.getChars(b,b+c,this.buf,this.pos),this.pos+=c);this.pos==this.buf.length&&(this.out.write(this.buf,0,this.buf.length),this.pos=0,d>c&&(b+=c,c=d-c,c>=this.buf.length?(f=P(d,"\x00"),a.getChars(b,b+c,f,0),
this.out.write(f,0,c)):(a.getChars(b,b+c,this.buf,this.pos),this.pos+=c)))}}},"~S,~N,~N")}),v(["java.io.InputStream"],"java.io.ByteArrayInputStream",["java.lang.IndexOutOfBoundsException","$.NullPointerException"],function(){c$=s(function(){this.buf=null;this.count=this.$mark=this.pos=0;p(this,arguments)},java.io,"ByteArrayInputStream",java.io.InputStream);t(c$,function(a){K(this,java.io.ByteArrayInputStream,[]);this.buf=a;this.pos=0;this.count=a.length},"~A");j(c$,"readByteAsInt",function(){return this.pos<
this.count?this.buf[this.pos++]&255:-1});j(c$,"read",function(a,b,d){if(null==a)throw new NullPointerException;if(0>b||0>d||d>a.length-b)throw new IndexOutOfBoundsException;if(this.pos>=this.count)return-1;var f=this.count-this.pos;d>f&&(d=f);if(0>=d)return 0;System.arraycopy(this.buf,this.pos,a,b,d);this.pos+=d;return d},"~A,~N,~N");j(c$,"skip",function(a){var b=this.count-this.pos;a<b&&(b=0>a?0:a);this.pos+=b;return b},"~N");j(c$,"available",function(){return this.count-this.pos});j(c$,"markSupported",
function(){return!0});j(c$,"mark",function(){this.$mark=this.pos},"~N");j(c$,"resetStream",function(){});j(c$,"reset",function(){this.pos=this.$mark});j(c$,"close",function(){})}),v(["java.io.OutputStream"],"java.io.ByteArrayOutputStream",["java.lang.IllegalArgumentException","$.IndexOutOfBoundsException","$.OutOfMemoryError"],function(){c$=s(function(){this.buf=null;this.count=0;p(this,arguments)},java.io,"ByteArrayOutputStream",java.io.OutputStream);t(c$,function(){this.construct(32)});t(c$,function(a){K(this,
java.io.ByteArrayOutputStream,[]);if(0>a)throw new IllegalArgumentException("Negative initial size: "+a);this.buf=Q(a,0)},"~N");c(c$,"ensureCapacity",function(a){0<a-this.buf.length&&this.grow(a)},"~N");c(c$,"grow",function(a){var b=this.buf.length<<1;0>b-a&&(b=a);if(0>b){if(0>a)throw new OutOfMemoryError;b=a}this.buf=java.io.ByteArrayOutputStream.arrayCopyByte(this.buf,b)},"~N");c$.arrayCopyByte=c(c$,"arrayCopyByte",function(a,b){var d=Q(b,0);System.arraycopy(a,0,d,0,a.length<b?a.length:b);return d},
"~A,~N");j(c$,"writeByteAsInt",function(a){this.ensureCapacity(this.count+1);this.buf[this.count]=a;this.count+=1},"~N");c(c$,"write",function(a,b,d){if(0>b||b>a.length||0>d||0<b+d-a.length)throw new IndexOutOfBoundsException;this.ensureCapacity(this.count+d);System.arraycopy(a,b,this.buf,this.count,d);this.count+=d},"~A,~N,~N");c(c$,"writeTo",function(a){a.write(this.buf,0,this.count)},"java.io.OutputStream");c(c$,"reset",function(){this.count=0});c(c$,"toByteArray",function(){return this.count==
this.buf.length?this.buf:java.io.ByteArrayOutputStream.arrayCopyByte(this.buf,this.count)});c(c$,"size",function(){return this.count});j(c$,"toString",function(){return String.instantialize(this.buf,0,this.count)});j(c$,"close",function(){})}),v(["java.io.InputStream"],"java.io.FilterInputStream",null,function(){c$=s(function(){this.$in=null;p(this,arguments)},java.io,"FilterInputStream",java.io.InputStream);t(c$,function(a){K(this,java.io.FilterInputStream,[]);this.$in=a},"java.io.InputStream");
c(c$,"readByteAsInt",function(){return this.$in.readByteAsInt()});c(c$,"read",function(a,b,d){return this.$in.read(a,b,d)},"~A,~N,~N");c(c$,"skip",function(a){return this.$in.skip(a)},"~N");c(c$,"available",function(){return this.$in.available()});c(c$,"close",function(){this.$in.close()});c(c$,"mark",function(a){this.$in.mark(a)},"~N");c(c$,"reset",function(){this.$in.reset()});c(c$,"markSupported",function(){return this.$in.markSupported()})}),v(null,"java.io.InputStream",["java.io.IOException",
"java.lang.IndexOutOfBoundsException","$.NullPointerException"],function(){c$=A(java.io,"InputStream");c(c$,"read",function(a,b,d){if(null==a)throw new NullPointerException;if(0>b||0>d||d>a.length-b)throw new IndexOutOfBoundsException;if(0==d)return 0;var f=this.readByteAsInt();if(-1==f)return-1;a[b]=f;var c=1;try{for(;c<d;c++){f=this.readByteAsInt();if(-1==f)break;a[b+c]=f}}catch(e){if(!B(e,java.io.IOException))throw e;}return c},"~A,~N,~N");c(c$,"skip",function(a){var b=a,d;null==java.io.InputStream.skipBuffer&&
(java.io.InputStream.skipBuffer=Q(2048,0));var f=java.io.InputStream.skipBuffer;if(0>=a)return 0;for(;0<b;){d=this.read(f,0,Math.min(2048,b));if(0>d)break;b-=d}return a-b},"~N");c(c$,"available",function(){return 0});c(c$,"close",function(){});c(c$,"mark",function(){},"~N");c(c$,"reset",function(){throw new java.io.IOException("mark/reset not supported");});c(c$,"markSupported",function(){return!1});c(c$,"resetStream",function(){});C(c$,"SKIP_BUFFER_SIZE",2048,"skipBuffer",null)}),v(["java.io.Reader"],
"java.io.InputStreamReader",["java.lang.NullPointerException"],function(){c$=s(function(){this.$in=null;this.isOpen=!0;this.charsetName=null;this.isUTF8=!1;this.bytearr=null;this.pos=0;p(this,arguments)},java.io,"InputStreamReader",java.io.Reader);t(c$,function(a,b){K(this,java.io.InputStreamReader,[a]);this.$in=a;this.charsetName=b;if(!(this.isUTF8="UTF-8".equals(b))&&!"ISO-8859-1".equals(b))throw new NullPointerException("charsetName");},"java.io.InputStream,~S");c(c$,"getEncoding",function(){return this.charsetName});
j(c$,"read",function(a,b,d){if(null==this.bytearr||this.bytearr.length<d)this.bytearr=Q(d,0);var f,c,e=0,h=b,l=this.$in.read(this.bytearr,this.pos,d-this.pos),k=this.$in.available();if(0>l)return-1;for(var n=l;e<n;){d=this.bytearr[e]&255;if(this.isUTF8)switch(d>>4){case 12:case 13:if(e+1>=l){if(1<=k){n=e;continue}}else if(128==((f=this.bytearr[e+1])&192)){a[h++]=String.fromCharCode((d&31)<<6|f&63);e+=2;continue}this.isUTF8=!1;break;case 14:if(e+2>=l){if(2<=k){n=e;continue}}else if(128==((f=this.bytearr[e+
1])&192)&&128==((c=this.bytearr[e+2])&192)){a[h++]=String.fromCharCode((d&15)<<12|(f&63)<<6|c&63);e+=3;continue}this.isUTF8=!1}e++;a[h++]=String.fromCharCode(d)}this.pos=l-e;for(a=0;a<this.pos;a++)this.bytearr[a]=this.bytearr[e++];return h-b},"~A,~N,~N");j(c$,"ready",function(){return this.isOpen});j(c$,"close",function(){this.$in.close();this.isOpen=!1})}),v(["java.io.Closeable","$.Flushable"],"java.io.OutputStream",["java.lang.IndexOutOfBoundsException","$.NullPointerException"],function(){c$=A(java.io,
"OutputStream",null,[java.io.Closeable,java.io.Flushable]);c(c$,"write",function(a,b,d){if(null==a)throw new NullPointerException;if(0>b||b>a.length||0>d||b+d>a.length||0>b+d)throw new IndexOutOfBoundsException;if(0!=d)for(var f=0;f<d;f++)this.writeByteAsInt(a[b+f])},"~A,~N,~N");j(c$,"flush",function(){});j(c$,"close",function(){})}),v(["java.io.Closeable"],"java.io.Reader",["java.io.IOException","java.lang.IllegalArgumentException","$.NullPointerException"],function(){c$=s(function(){this.skipBuffer=
this.lock=null;p(this,arguments)},java.io,"Reader",null,java.io.Closeable);t(c$,function(a){if(null==a)throw new NullPointerException;this.lock=a},"~O");c(c$,"skip",function(a){if(0>a)throw new IllegalArgumentException("skip value is negative");var b=Math.min(a,8192);if(null==this.skipBuffer||this.skipBuffer.length<b)this.skipBuffer=fa(b,"\x00");for(var d=a;0<d;){var f=this.read(this.skipBuffer,0,Math.min(d,b));if(-1==f)break;d-=f}return a-d},"~N");c(c$,"ready",function(){return!1});c(c$,"markSupported",
function(){return!1});c(c$,"mark",function(){throw new java.io.IOException("mark() not supported");},"~N");c(c$,"reset",function(){throw new java.io.IOException("reset() not supported");});C(c$,"MAX_SKIP_BUFFE_SIZE",8192)}),v(["java.io.Reader"],"java.io.StringReader",["java.io.IOException","java.lang.IllegalArgumentException","$.IndexOutOfBoundsException"],function(){c$=s(function(){this.str=null;this.$mark=this.next=this.length=0;p(this,arguments)},java.io,"StringReader",java.io.Reader);t(c$,function(a){K(this,
java.io.StringReader,[a]);this.str=a;this.length=a.length},"~S");c(c$,"ensureOpen",function(){if(null==this.str)throw new java.io.IOException("Stream closed");});j(c$,"read",function(a,b,d){this.ensureOpen();if(0>b||b>a.length||0>d||b+d>a.length||0>b+d)throw new IndexOutOfBoundsException;if(0==d)return 0;if(this.next>=this.length)return-1;d=Math.min(this.length-this.next,d);this.str.getChars(this.next,this.next+d,a,b);this.next+=d;return d},"~A,~N,~N");j(c$,"skip",function(a){this.ensureOpen();if(this.next>=
this.length)return 0;a=Math.min(this.length-this.next,a);a=Math.max(-this.next,a);this.next+=a;return a},"~N");j(c$,"ready",function(){this.ensureOpen();return!0});j(c$,"markSupported",function(){return!0});j(c$,"mark",function(a){if(0>a)throw new IllegalArgumentException("Read-ahead limit < 0");this.ensureOpen();this.$mark=this.next},"~N");j(c$,"reset",function(){this.ensureOpen();this.next=this.$mark});j(c$,"close",function(){this.str=null})}),v(["java.io.Closeable","$.Flushable","java.lang.Appendable"],
"java.io.Writer",["java.lang.NullPointerException","$.StringIndexOutOfBoundsException"],function(){c$=s(function(){this.lock=null;p(this,arguments)},java.io,"Writer",null,[Appendable,java.io.Closeable,java.io.Flushable]);t(c$,function(){this.lock=this});t(c$,function(a){if(null!=a)this.lock=a;else throw new NullPointerException;},"~O");c(c$,"write",function(a){this.write(a,0,a.length)},"~A");c(c$,"write",function(a){var b=P(1,"\x00");b[0]=String.fromCharCode(a);this.write(b)},"~N");c(c$,"write",function(a){var b=
P(a.length,"\x00");a.getChars(0,b.length,b,0);this.write(b)},"~S");c(c$,"write",function(a,b,d){if(0<=d){var f=P(d,"\x00");a.getChars(b,b+d,f,0);this.write(f)}else throw new StringIndexOutOfBoundsException;},"~S,~N,~N");c(c$,"append",function(a){this.write(a.charCodeAt(0));return this},"~N");c(c$,"append",function(a){null==a?this.write("null"):this.write(a.toString());return this},"CharSequence");c(c$,"append",function(a,b,d){null==a?this.write("null".substring(b,d)):this.write(a.subSequence(b,d).toString());
return this},"CharSequence,~N,~N");C(c$,"TOKEN_NULL","null")}),u("java.net"),v(["java.io.IOException"],"java.net.MalformedURLException",null,function(){c$=A(java.net,"MalformedURLException",java.io.IOException);t(c$,function(){K(this,java.net.MalformedURLException,[])})}),u("java.net"),v(["java.util.Hashtable"],"java.net.URL",["java.io.IOException","java.lang.Character","$.Error","java.net.MalformedURLException"],function(){c$=s(function(){this.host=this.protocol=null;this.port=-1;this.handler=this.ref=
this.userInfo=this.path=this.authority=this.query=this.file=null;this.$hashCode=-1;p(this,arguments)},java.net,"URL",null,java.io.Serializable);t(c$,function(a,b,d){var f,c,e,h=0,l=null,k=!1,n=!1;if(null!=d){var j=System.getSecurityManager();null!=j&&this.checkSpecifyHandler(j)}try{for(c=b.length;0<c&&" ">=b.charAt(c-1);)c--;for(;h<c&&" ">=b.charAt(h);)h++;b.regionMatches(!0,h,"url:",0,4)&&(h+=4);h<b.length&&"#"==b.charAt(h)&&(k=!0);for(f=h;!k&&f<c&&47!=(e=b.charCodeAt(f));f++)if(58==e){var r=b.substring(h,
f).toLowerCase();this.isValidProtocol(r)&&(l=r,h=f+1);break}this.protocol=l;if(null!=a&&(null==l||l.equalsIgnoreCase(a.protocol)))null==d&&(d=a.handler),null!=a.path&&a.path.startsWith("/")&&(l=null),null==l&&(this.protocol=a.protocol,this.authority=a.authority,this.userInfo=a.userInfo,this.host=a.host,this.port=a.port,this.file=a.file,this.path=a.path,n=!0);if(null==this.protocol)throw new java.net.MalformedURLException("no protocol: "+b);if(null==d&&null==(d=java.net.URL.getURLStreamHandler(this.protocol)))throw new java.net.MalformedURLException("unknown protocol: "+
this.protocol);this.handler=d;f=b.indexOf("#",h);0<=f&&(this.ref=b.substring(f+1,c),c=f);n&&h==c&&(this.query=a.query,null==this.ref&&(this.ref=a.ref));d.parseURL(this,b,h,c)}catch(y){if(B(y,java.net.MalformedURLException))throw y;if(B(y,Exception))throw a=y,b=new java.net.MalformedURLException(a.getMessage()),b.initCause(a),b;throw y;}},"java.net.URL,~S,java.net.URLStreamHandler");c(c$,"isValidProtocol",function(a){var b=a.length;if(1>b)return!1;var d=a.charAt(0);if(!Character.isLetter(d))return!1;
for(var f=1;f<b;f++)if(d=a.charAt(f),!Character.isLetterOrDigit(d)&&"."!=d&&"+"!=d&&"-"!=d)return!1;return!0},"~S");c(c$,"checkSpecifyHandler",function(){},"SecurityManager");c(c$,"set5",function(a,b,d,f,c){this.protocol=a;this.host=b;this.authority=-1==d?b:b+":"+d;this.port=d;this.file=f;this.ref=c;this.$hashCode=-1;a=f.lastIndexOf("?");-1!=a?(this.query=f.substring(a+1),this.path=f.substring(0,a)):this.path=f},"~S,~S,~N,~S,~S");c(c$,"set",function(a,b,d,f,c,e,h,l){this.protocol=a;this.host=b;this.port=
d;this.file=null==h?e:e+"?"+h;this.userInfo=c;this.path=e;this.ref=l;this.$hashCode=-1;this.query=h;this.authority=f},"~S,~S,~N,~S,~S,~S,~S,~S");c(c$,"getQuery",function(){return this.query});c(c$,"getPath",function(){return this.path});c(c$,"getUserInfo",function(){return this.userInfo});c(c$,"getAuthority",function(){return this.authority});c(c$,"getPort",function(){return this.port});c(c$,"getDefaultPort",function(){return this.handler.getDefaultPort()});c(c$,"getProtocol",function(){return this.protocol});
c(c$,"getHost",function(){return this.host});c(c$,"getFile",function(){return this.file});c(c$,"getRef",function(){return this.ref});j(c$,"equals",function(a){return!q(a,java.net.URL)?!1:this.handler.equals2(this,a)},"~O");j(c$,"hashCode",function(){return-1!=this.$hashCode?this.$hashCode:this.$hashCode=this.handler.hashCode(this)});c(c$,"sameFile",function(a){return this.handler.sameFile(this,a)},"java.net.URL");j(c$,"toString",function(){return this.toExternalForm()});c(c$,"toExternalForm",function(){return this.handler.toExternalForm(this)});
c(c$,"openConnection",function(){return this.handler.openConnection(this)});c(c$,"openStream",function(){return this.openConnection().getInputStream()});c(c$,"getContent",function(){return this.openConnection().getInputStream()});c$.setURLStreamHandlerFactory=c(c$,"setURLStreamHandlerFactory",function(a){if(null!=java.net.URL.factory)throw Error("factory already defined");var b=System.getSecurityManager();null!=b&&b.checkSetFactory();java.net.URL.handlers.clear();java.net.URL.factory=a},"java.net.URLStreamHandlerFactory");
c$.getURLStreamHandler=c(c$,"getURLStreamHandler",function(a){var b=java.net.URL.handlers.get(a);null==b&&null!=java.net.URL.factory&&(b=java.net.URL.factory.createURLStreamHandler(a));return b},"~S");C(c$,"factory",null);c$.handlers=c$.prototype.handlers=new java.util.Hashtable;c$.streamHandlerLock=c$.prototype.streamHandlerLock=new ca._O}),u("java.net"),v(null,"java.net.URLConnection",["java.lang.IllegalStateException","$.NullPointerException","java.net.UnknownServiceException","JU.Lst"],function(){c$=
s(function(){this.url=null;this.doInput=!0;this.connected=this.doOutput=!1;this.requests=null;p(this,arguments)},java.net,"URLConnection");c(c$,"setDoInput",function(a){if(this.connected)throw new IllegalStateException("Already connected");this.doInput=a},"~B");c(c$,"getDoInput",function(){return this.doInput});c(c$,"setDoOutput",function(a){if(this.connected)throw new IllegalStateException("Already connected");this.doOutput=a},"~B");c(c$,"getDoOutput",function(){return this.doOutput});t(c$,function(a){this.url=
a},"java.net.URL");c(c$,"getURL",function(){return this.url});c(c$,"getInputStream",function(){throw new java.net.UnknownServiceException("protocol doesn't support input");});c(c$,"getOutputStream",function(){throw new java.net.UnknownServiceException("protocol doesn't support output");});c(c$,"setRequestProperty",function(a,b){if(this.connected)throw new IllegalStateException("Already connected");if(null==a)throw new NullPointerException("key is null");null==this.requests&&(this.requests=new JU.Lst);
for(var d=this.requests.size();0<=--d;)if(this.requests.get(d)[0].equals(a)){this.requests.get(d)[1]=b;return}this.requests.addLast([a,b])},"~S,~S")}),u("java.net"),c$=A(java.net,"URLEncoder"),c$.encode=c(c$,"encode",function(a){return encodeURIComponent(a)},"~S"),c$.encode=c(c$,"encode",function(a){return encodeURIComponent(a)},"~S,~S"),C(c$,"digits","0123456789ABCDEF"),u("java.net"),v(null,"java.net.URLStreamHandler",["java.lang.IllegalArgumentException","$.SecurityException","$.UnsupportedOperationException"],
function(){c$=A(java.net,"URLStreamHandler");c(c$,"openConnectionProxy",function(){throw new UnsupportedOperationException("Method not implemented.");},"java.net.URL,java.net.Proxy");c(c$,"parseURL",function(a,b,d,f){var c=a.getProtocol(),e=a.getAuthority(),h=a.getUserInfo(),l=a.getHost(),k=a.getPort(),n=a.getPath(),j=a.getQuery(),r=a.getRef(),y=!1,w=!1;if(d<f){var F=b.indexOf("?"),w=F==d;-1!=F&&F<f&&(j=b.substring(F+1,f),f>F&&(f=F),b=b.substring(0,F))}var G=0;if(!(d<=f-4&&"/"==b.charAt(d)&&"/"==
b.charAt(d+1)&&"/"==b.charAt(d+2)&&"/"==b.charAt(d+3))&&d<=f-2&&"/"==b.charAt(d)&&"/"==b.charAt(d+1)){d+=2;G=b.indexOf("/",d);0>G&&(G=b.indexOf("?",d),0>G&&(G=f));l=e=b.substring(d,G);F=e.indexOf("@");-1!=F?(h=e.substring(0,F),l=e.substring(F+1)):h=null;if(null!=l){if(0<l.length&&"["==l.charAt(0))throw new IllegalArgumentException("Invalid host: "+l);F=l.indexOf(":");k=-1;0<=F&&(l.length>F+1&&(k=Integer.parseInt(l.substring(F+1))),l=l.substring(0,F))}else l="";if(-1>k)throw new IllegalArgumentException("Invalid port number :"+
k);d=G;0<e.length&&(n="")}null==l&&(l="");d<f?"/"==b.charAt(d)?n=b.substring(d,f):null!=n&&0<n.length?(y=!0,F=n.lastIndexOf("/"),w="",-1==F&&null!=e&&(w="/"),n=n.substring(0,F+1)+w+b.substring(d,f)):n=(null!=e?"/":"")+b.substring(d,f):w&&null!=n&&(F=n.lastIndexOf("/"),0>F&&(F=0),n=n.substring(0,F)+"/");null==n&&(n="");if(y){for(;0<=(G=n.indexOf("/./"));)n=n.substring(0,G)+n.substring(G+2);for(G=0;0<=(G=n.indexOf("/../",G));)0<G&&0<=(f=n.lastIndexOf("/",G-1))&&0!=n.indexOf("/../",f)?(n=n.substring(0,
f)+n.substring(G+3),G=0):G+=3;for(;n.endsWith("/..");)if(G=n.indexOf("/.."),0<=(f=n.lastIndexOf("/",G-1)))n=n.substring(0,f+1);else break;n.startsWith("./")&&2<n.length&&(n=n.substring(2));n.endsWith("/.")&&(n=n.substring(0,n.length-1))}this.setURL(a,c,l,k,e,h,n,j,r)},"java.net.URL,~S,~N,~N");c(c$,"getDefaultPort",function(){return-1});c(c$,"equals2",function(a,b){var d=a.getRef(),f=b.getRef();return(d===f||null!=d&&d.equals(f))&&this.sameFile(a,b)},"java.net.URL,java.net.URL");c(c$,"hashCode",function(a){var b=
0,d=a.getProtocol();null!=d&&(b+=d.hashCode());b+=a.toString().hashCode();d=a.getFile();null!=d&&(b+=d.hashCode());b=-1==a.getPort()?b+this.getDefaultPort():b+a.getPort();a=a.getRef();null!=a&&(b+=a.hashCode());return b},"java.net.URL");c(c$,"sameFile",function(a,b){if(!(a.getProtocol()===b.getProtocol()||null!=a.getProtocol()&&a.getProtocol().equalsIgnoreCase(b.getProtocol()))||!(a.getFile()===b.getFile()||null!=a.getFile()&&a.getFile().equals(b.getFile())))return!1;var d,f;d=-1!=a.getPort()?a.getPort():
a.handler.getDefaultPort();f=-1!=b.getPort()?b.getPort():b.handler.getDefaultPort();return d!=f||!this.hostsEqual(a,b)?!1:!0},"java.net.URL,java.net.URL");c(c$,"hostsEqual",function(a,b){return null!=a.getHost()&&null!=b.getHost()?a.getHost().equalsIgnoreCase(b.getHost()):null==a.getHost()&&null==b.getHost()},"java.net.URL,java.net.URL");c(c$,"toExternalForm",function(){return""},"java.net.URL");c(c$,"setURL",function(a,b,d,f,c,e,h,l,k){if(this!==a.handler)throw new SecurityException("handler for url different from this handler");
a.set(a.getProtocol(),d,f,c,e,h,l,k)},"java.net.URL,~S,~S,~N,~S,~S,~S,~S,~S");c(c$,"setURLDeprecated",function(a,b,d,f,c,e){var h=null,l=null;if(null!=d&&0!=d.length){var h=-1==f?d:d+":"+f,k=d.lastIndexOf("@");-1!=k&&(l=d.substring(0,k),d=d.substring(k+1))}var n=null,k=null;null!=c&&(n=c.lastIndexOf("?"),-1!=n?(k=c.substring(n+1),n=c.substring(0,n)):n=c);this.setURL(a,b,d,f,h,l,n,k,e)},"java.net.URL,~S,~S,~N,~S,~S")}),u("java.net"),H(java.net,"URLStreamHandlerFactory"),u("java.text"),c$=s(function(){this.pattern=
null;p(this,arguments)},java.text,"MessageFormat"),t(c$,function(a){this.pattern=a},"~S"),t(c$,function(a){this.pattern=a},"~S,java.util.Locale"),c$.format=c(c$,"format",function(a,b){return a.replace(/\{(\d+)\}/g,function(a,f){var c=parseInt(f);return null==b?null:b[c]})},"~S,~A"),c(c$,"format",function(a){return java.text.MessageFormat.format(this.pattern,[a])},"~O"),v(["java.util.Collection"],"java.util.AbstractCollection",["java.lang.StringBuilder","$.UnsupportedOperationException","java.lang.reflect.Array"],
function(){c$=A(java.util,"AbstractCollection",null,java.util.Collection);t(c$,function(){});j(c$,"add",function(){throw new UnsupportedOperationException;},"~O");j(c$,"addAll",function(a){var b=!1;for(a=a.iterator();a.hasNext();)this.add(a.next())&&(b=!0);return b},"java.util.Collection");j(c$,"clear",function(){for(var a=this.iterator();a.hasNext();)a.next(),a.remove()});j(c$,"contains",function(a){var b=this.iterator();if(null!=a)for(;b.hasNext();){if(a.equals(b.next()))return!0}else for(;b.hasNext();)if(null==
b.next())return!0;return!1},"~O");j(c$,"containsAll",function(a){for(a=a.iterator();a.hasNext();)if(!this.contains(a.next()))return!1;return!0},"java.util.Collection");j(c$,"isEmpty",function(){return 0==this.size()});j(c$,"remove",function(a){var b=this.iterator();if(null!=a)for(;b.hasNext();){if(a.equals(b.next()))return b.remove(),!0}else for(;b.hasNext();)if(null==b.next())return b.remove(),!0;return!1},"~O");j(c$,"removeAll",function(a){for(var b=!1,d=this.iterator();d.hasNext();)a.contains(d.next())&&
(d.remove(),b=!0);return b},"java.util.Collection");j(c$,"retainAll",function(a){for(var b=!1,d=this.iterator();d.hasNext();)a.contains(d.next())||(d.remove(),b=!0);return b},"java.util.Collection");c(c$,"toArray",function(){for(var a=this.size(),b=0,d=this.iterator(),f=Array(a);b<a;)f[b++]=d.next();return f});c(c$,"toArray",function(a){var b=this.size(),d=0;b>a.length&&(a=a.getClass().getComponentType(),a=java.lang.reflect.Array.newInstance(a,b));for(var f,b=this.iterator();b.hasNext()&&((f=b.next())||
1);)a[d++]=f;d<a.length&&(a[d]=null);return a},"~A");j(c$,"toString",function(){if(this.isEmpty())return"[]";var a=new StringBuilder(16*this.size());a.append("[");for(var b=this.iterator();b.hasNext();){var d=b.next();d!==this?a.append(d):a.append("(this Collection)");b.hasNext()&&a.append(", ")}a.append("]");return a.toString()})}),v("java.util.AbstractCollection $.Iterator $.List $.ListIterator $.RandomAccess $.NoSuchElementException".split(" "),"java.util.AbstractList",["java.lang.IllegalArgumentException",
"$.IllegalStateException","$.IndexOutOfBoundsException","$.UnsupportedOperationException","java.util.ConcurrentModificationException"],function(){c$=s(function(){this.modCount=0;p(this,arguments)},java.util,"AbstractList",java.util.AbstractCollection,java.util.List);c(c$,"add",function(){throw new UnsupportedOperationException;},"~N,~O");c(c$,"add",function(a){this.add(this.size(),a);return!0},"~O");c(c$,"addAll",function(a,b){for(var d=b.iterator();d.hasNext();)this.add(a++,d.next());return!b.isEmpty()},
"~N,java.util.Collection");j(c$,"clear",function(){this.removeRange(0,this.size())});j(c$,"equals",function(a){if(this===a)return!0;if(q(a,java.util.List)){if(a.size()!=this.size())return!1;var b=this.iterator();for(a=a.iterator();b.hasNext();){var d=b.next(),f=a.next();if(!(null==d?null==f:d.equals(f)))return!1}return!0}return!1},"~O");j(c$,"hashCode",function(){for(var a=1,b=this.iterator();b.hasNext();)var d=b.next(),a=31*a+(null==d?0:d.hashCode());return a});j(c$,"indexOf",function(a){var b=this.listIterator();
if(null!=a)for(;b.hasNext();){if(a.equals(b.next()))return b.previousIndex()}else for(;b.hasNext();)if(null==b.next())return b.previousIndex();return-1},"~O");j(c$,"iterator",function(){return new java.util.AbstractListSimpleListIterator(this)});j(c$,"lastIndexOf",function(a){var b=this.listIterator(this.size());if(null!=a)for(;b.hasPrevious();){if(a.equals(b.previous()))return b.nextIndex()}else for(;b.hasPrevious();)if(null==b.previous())return b.nextIndex();return-1},"~O");c(c$,"listIterator",
function(a){a||(a=0);return new java.util.AbstractListFullListIterator(this,a)},"~N");c(c$,"remove",function(){throw new UnsupportedOperationException;},"~N");c(c$,"removeRange",function(a,b){for(var d=this.listIterator(a),f=a;f<b;f++)d.next(),d.remove()},"~N,~N");j(c$,"set",function(){throw new UnsupportedOperationException;},"~N,~O");j(c$,"subList",function(a,b){if(0<=a&&b<=this.size()){if(a<=b)return q(this,java.util.RandomAccess)?new java.util.AbstractList.SubAbstractListRandomAccess(this,a,b):
new java.util.AbstractList.SubAbstractList(this,a,b);throw new IllegalArgumentException;}throw new IndexOutOfBoundsException;},"~N,~N");I(self.c$);c$=s(function(){this.pos=-1;this.expectedModCount=0;this.lastPosition=-1;p(this,arguments)},java.util,"AbstractListSimpleListIterator",null,java.util.Iterator);t(c$,function(a){this._list=a;this.expectedModCount=a.modCount},"java.util.AbstractList");j(c$,"hasNext",function(){return this.pos+1<this._list.size()});j(c$,"next",function(){if(this.expectedModCount==
this._list.modCount)try{var a=this._list.get(this.pos+1);this.lastPosition=++this.pos;return a}catch(b){if(q(b,IndexOutOfBoundsException))throw new java.util.NoSuchElementException;throw b;}throw new java.util.ConcurrentModificationException;});j(c$,"remove",function(){if(this.expectedModCount==this._list.modCount){try{this._list.remove(this.lastPosition)}catch(a){if(q(a,IndexOutOfBoundsException))throw new IllegalStateException;throw a;}this._list.modCount!=this.expectedModCount&&this.expectedModCount++;
this.pos==this.lastPosition&&this.pos--;this.lastPosition=-1}else throw new java.util.ConcurrentModificationException;});c$=L();I(self.c$);c$=s(function(){p(this,arguments)},java.util,"AbstractListFullListIterator",java.util.AbstractListSimpleListIterator,java.util.ListIterator);t(c$,function(a,b){K(this,java.util.AbstractListFullListIterator,[a]);if(0<=b&&b<=this._list.size())this.pos=b-1;else throw new IndexOutOfBoundsException;},"java.util.AbstractList,~N");j(c$,"add",function(a){if(this.expectedModCount==
this._list.modCount){try{this._list.add(this.pos+1,a)}catch(b){if(q(b,IndexOutOfBoundsException))throw new java.util.NoSuchElementException;throw b;}this.pos++;this.lastPosition=-1;this._list.modCount!=this.expectedModCount&&this.expectedModCount++}else throw new java.util.ConcurrentModificationException;},"~O");j(c$,"hasPrevious",function(){return 0<=this.pos});j(c$,"nextIndex",function(){return this.pos+1});j(c$,"previous",function(){if(this.expectedModCount==this._list.modCount)try{var a=this._list.get(this.pos);
this.lastPosition=this.pos;this.pos--;return a}catch(b){if(q(b,IndexOutOfBoundsException))throw new java.util.NoSuchElementException;throw b;}throw new java.util.ConcurrentModificationException;});j(c$,"previousIndex",function(){return this.pos});j(c$,"set",function(a){if(this.expectedModCount==this._list.modCount)try{this._list.set(this.lastPosition,a)}catch(b){if(q(b,IndexOutOfBoundsException))throw new IllegalStateException;throw b;}else throw new java.util.ConcurrentModificationException;},"~O");
c$=L();I(self.c$);c$=A(java.util.AbstractList,"SubAbstractListRandomAccess",java.util.AbstractList.SubAbstractList,java.util.RandomAccess);c$=L();I(self.c$);c$=s(function(){this.fullList=null;this.$size=this.offset=0;p(this,arguments)},java.util.AbstractList,"SubAbstractList",java.util.AbstractList);t(c$,function(a,b,d){K(this,java.util.AbstractList.SubAbstractList);this.fullList=a;this.modCount=this.fullList.modCount;this.offset=b;this.$size=d-b},"java.util.AbstractList,~N,~N");c(c$,"add",function(a,
b){if(this.modCount==this.fullList.modCount)if(0<=a&&a<=this.$size)this.fullList.add(a+this.offset,b),this.$size++,this.modCount=this.fullList.modCount;else throw new IndexOutOfBoundsException;else throw new java.util.ConcurrentModificationException;},"~N,~O");c(c$,"addAll",function(a,b){if(this.modCount==this.fullList.modCount){if(0<=a&&a<=this.$size){var d=this.fullList.addAll(a+this.offset,b);d&&(this.$size+=b.size(),this.modCount=this.fullList.modCount);return d}throw new IndexOutOfBoundsException;
}throw new java.util.ConcurrentModificationException;},"~N,java.util.Collection");c(c$,"addAll",function(a){if(this.modCount==this.fullList.modCount){var b=this.fullList.addAll(this.offset+this.$size,a);b&&(this.$size+=a.size(),this.modCount=this.fullList.modCount);return b}throw new java.util.ConcurrentModificationException;},"java.util.Collection");c(c$,"get",function(a){if(this.modCount==this.fullList.modCount){if(0<=a&&a<this.$size)return this.fullList.get(a+this.offset);throw new IndexOutOfBoundsException;
}throw new java.util.ConcurrentModificationException;},"~N");j(c$,"iterator",function(){return this.listIterator(0)});c(c$,"listIterator",function(a){if(this.modCount==this.fullList.modCount){if(0<=a&&a<=this.$size)return new java.util.AbstractList.SubAbstractList.SubAbstractListIterator(this.fullList.listIterator(a+this.offset),this,this.offset,this.$size);throw new IndexOutOfBoundsException;}throw new java.util.ConcurrentModificationException;},"~N");c(c$,"remove",function(a){if(this.modCount==
this.fullList.modCount){if(0<=a&&a<this.$size)return a=this.fullList.remove(a+this.offset),this.$size--,this.modCount=this.fullList.modCount,a;throw new IndexOutOfBoundsException;}throw new java.util.ConcurrentModificationException;},"~N");c(c$,"removeRange",function(a,b){if(a!=b)if(this.modCount==this.fullList.modCount)this.fullList.removeRange(a+this.offset,b+this.offset),this.$size-=b-a,this.modCount=this.fullList.modCount;else throw new java.util.ConcurrentModificationException;},"~N,~N");c(c$,
"set",function(a,b){if(this.modCount==this.fullList.modCount){if(0<=a&&a<this.$size)return this.fullList.set(a+this.offset,b);throw new IndexOutOfBoundsException;}throw new java.util.ConcurrentModificationException;},"~N,~O");j(c$,"size",function(){return this.$size});c(c$,"sizeChanged",function(a){a?this.$size++:this.$size--;this.modCount=this.fullList.modCount},"~B");I(self.c$);c$=s(function(){this.iterator=this.subList=null;this.end=this.start=0;p(this,arguments)},java.util.AbstractList.SubAbstractList,
"SubAbstractListIterator",null,java.util.ListIterator);t(c$,function(a,b,d,f){this.iterator=a;this.subList=b;this.start=d;this.end=this.start+f},"java.util.ListIterator,java.util.AbstractList.SubAbstractList,~N,~N");c(c$,"add",function(a){this.iterator.add(a);this.subList.sizeChanged(!0);this.end++},"~O");j(c$,"hasNext",function(){return this.iterator.nextIndex()<this.end});j(c$,"hasPrevious",function(){return this.iterator.previousIndex()>=this.start});c(c$,"next",function(){if(this.iterator.nextIndex()<
this.end)return this.iterator.next();throw new java.util.NoSuchElementException;});c(c$,"nextIndex",function(){return this.iterator.nextIndex()-this.start});c(c$,"previous",function(){if(this.iterator.previousIndex()>=this.start)return this.iterator.previous();throw new java.util.NoSuchElementException;});c(c$,"previousIndex",function(){var a=this.iterator.previousIndex();return a>=this.start?a-this.start:-1});c(c$,"remove",function(){this.iterator.remove();this.subList.sizeChanged(!1);this.end--});
c(c$,"set",function(a){this.iterator.set(a)},"~O");c$=L();c$=L()}),v(["java.util.Map"],"java.util.AbstractMap",["java.lang.StringBuilder","$.UnsupportedOperationException","java.util.AbstractCollection","$.AbstractSet","$.Iterator"],function(){c$=s(function(){this.valuesCollection=this.$keySet=null;p(this,arguments)},java.util,"AbstractMap",null,java.util.Map);t(c$,function(){});j(c$,"clear",function(){this.entrySet().clear()});j(c$,"containsKey",function(a){var b=this.entrySet().iterator();if(null!=
a)for(;b.hasNext();){if(a.equals(b.next().getKey()))return!0}else for(;b.hasNext();)if(null==b.next().getKey())return!0;return!1},"~O");j(c$,"containsValue",function(a){var b=this.entrySet().iterator();if(null!=a)for(;b.hasNext();){if(a.equals(b.next().getValue()))return!0}else for(;b.hasNext();)if(null==b.next().getValue())return!0;return!1},"~O");j(c$,"equals",function(a){if(this===a)return!0;if(q(a,java.util.Map)){if(this.size()!=a.size())return!1;a=a.entrySet();for(var b=this.entrySet().iterator();b.hasNext();)if(!a.contains(b.next()))return!1;
return!0}return!1},"~O");j(c$,"get",function(a){var b=this.entrySet().iterator();if(null!=a)for(;b.hasNext();){var d=b.next();if(a.equals(d.getKey()))return d.getValue()}else for(;b.hasNext();)if(d=b.next(),null==d.getKey())return d.getValue();return null},"~O");j(c$,"hashCode",function(){for(var a=0,b=this.entrySet().iterator();b.hasNext();)a+=b.next().hashCode();return a});j(c$,"isEmpty",function(){return 0==this.size()});j(c$,"keySet",function(){null==this.$keySet&&(this.$keySet=(S("java.util.AbstractMap$1")?
0:java.util.AbstractMap.$AbstractMap$1$(),T(java.util.AbstractMap$1,this,null)));return this.$keySet});j(c$,"put",function(){throw new UnsupportedOperationException;},"~O,~O");j(c$,"putAll",function(a){var b;for(a=a.entrySet().iterator();a.hasNext()&&((b=a.next())||1);)this.put(b.getKey(),b.getValue())},"java.util.Map");j(c$,"remove",function(a){var b=this.entrySet().iterator();if(null!=a)for(;b.hasNext();){var d=b.next();if(a.equals(d.getKey()))return b.remove(),d.getValue()}else for(;b.hasNext();)if(d=
b.next(),null==d.getKey())return b.remove(),d.getValue();return null},"~O");j(c$,"size",function(){return this.entrySet().size()});j(c$,"toString",function(){if(this.isEmpty())return"{}";var a=new StringBuilder(28*this.size());a.append("{");for(var b=this.entrySet().iterator();b.hasNext();){var d=b.next(),f=d.getKey();f!==this?a.append(f):a.append("(this Map)");a.append("=");d=d.getValue();d!==this?a.append(d):a.append("(this Map)");b.hasNext()&&a.append(", ")}a.append("}");return a.toString()});
j(c$,"values",function(){null==this.valuesCollection&&(this.valuesCollection=(S("java.util.AbstractMap$2")?0:java.util.AbstractMap.$AbstractMap$2$(),T(java.util.AbstractMap$2,this,null)));return this.valuesCollection});c(c$,"clone",function(){var a=V(this,java.util.AbstractMap,"clone",[]);a.$keySet=null;a.valuesCollection=null;return a});c$.$AbstractMap$1$=function(){I(self.c$);c$=da(java.util,"AbstractMap$1",java.util.AbstractSet);j(c$,"contains",function(a){return this.b$["java.util.AbstractMap"].containsKey(a)},
"~O");j(c$,"size",function(){return this.b$["java.util.AbstractMap"].size()});j(c$,"iterator",function(){return S("java.util.AbstractMap$1$1")?0:java.util.AbstractMap.$AbstractMap$1$1$(),T(java.util.AbstractMap$1$1,this,null)});c$=L()};c$.$AbstractMap$1$1$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.setIterator=null;p(this,arguments)},java.util,"AbstractMap$1$1",null,java.util.Iterator);N(c$,function(){this.setIterator=this.b$["java.util.AbstractMap"].entrySet().iterator()});j(c$,
"hasNext",function(){return this.setIterator.hasNext()});j(c$,"next",function(){return this.setIterator.next().getKey()});j(c$,"remove",function(){this.setIterator.remove()});c$=L()};c$.$AbstractMap$2$=function(){I(self.c$);c$=da(java.util,"AbstractMap$2",java.util.AbstractCollection);j(c$,"size",function(){return this.b$["java.util.AbstractMap"].size()});j(c$,"contains",function(a){return this.b$["java.util.AbstractMap"].containsValue(a)},"~O");j(c$,"iterator",function(){return S("java.util.AbstractMap$2$1")?
0:java.util.AbstractMap.$AbstractMap$2$1$(),T(java.util.AbstractMap$2$1,this,null)});c$=L()};c$.$AbstractMap$2$1$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.setIterator=null;p(this,arguments)},java.util,"AbstractMap$2$1",null,java.util.Iterator);N(c$,function(){this.setIterator=this.b$["java.util.AbstractMap"].entrySet().iterator()});j(c$,"hasNext",function(){return this.setIterator.hasNext()});j(c$,"next",function(){return this.setIterator.next().getValue()});j(c$,"remove",function(){this.setIterator.remove()});
c$=L()}}),v(["java.util.AbstractCollection","$.Set"],"java.util.AbstractSet",null,function(){c$=A(java.util,"AbstractSet",java.util.AbstractCollection,java.util.Set);j(c$,"equals",function(a){return this===a?!0:q(a,java.util.Set)?this.size()==a.size()&&this.containsAll(a):!1},"~O");j(c$,"hashCode",function(){for(var a=0,b=this.iterator();b.hasNext();)var d=b.next(),a=a+(null==d?0:d.hashCode());return a});j(c$,"removeAll",function(a){var b=!1;if(this.size()<=a.size())for(var d=this.iterator();d.hasNext();)a.contains(d.next())&&
(d.remove(),b=!0);else for(d=a.iterator();d.hasNext();)b=this.remove(d.next())||b;return b},"java.util.Collection")}),v(["java.util.AbstractList","$.List","$.RandomAccess"],"java.util.ArrayList",["java.lang.IllegalArgumentException","$.IndexOutOfBoundsException","java.lang.reflect.Array","java.util.Arrays"],function(){c$=s(function(){this.lastIndex=this.firstIndex=0;this.array=null;p(this,arguments)},java.util,"ArrayList",java.util.AbstractList,[java.util.List,Cloneable,java.io.Serializable,java.util.RandomAccess]);
X(c$,function(){this.setup(0)});c(c$,"setup",function(a){this.firstIndex=this.lastIndex=0;try{this.array=this.newElementArray(a)}catch(b){if(q(b,NegativeArraySizeException))throw new IllegalArgumentException;throw b;}},"~N");c(c$,"newElementArray",($fz=function(a){return Array(a)},$fz.isPrivate=!0,$fz),"~N");j(c$,"add",function(a,b){if(1==arguments.length)return this.add1(a);var d=this.size();if(0<a&&a<d){if(0==this.firstIndex&&this.lastIndex==this.array.length)this.growForInsert(a,1);else if(a<Math.floor(d/
2)&&0<this.firstIndex||this.lastIndex==this.array.length)System.arraycopy(this.array,this.firstIndex,this.array,--this.firstIndex,a);else{var f=a+this.firstIndex;System.arraycopy(this.array,f,this.array,f+1,d-a);this.lastIndex++}this.array[a+this.firstIndex]=b}else if(0==a)0==this.firstIndex&&this.growAtFront(1),this.array[--this.firstIndex]=b;else if(a==d)this.lastIndex==this.array.length&&this.growAtEnd(1),this.array[this.lastIndex++]=b;else throw new IndexOutOfBoundsException;this.modCount++},
"~N,~O");j(c$,"add1",function(a){this.lastIndex==this.array.length&&this.growAtEnd(1);this.array[this.lastIndex++]=a;this.modCount++;return!0},"~O");j(c$,"addAll",function(a){var b=a.size();if(0<b){this.lastIndex>this.array.length-b&&this.growAtEnd(b);a=a.iterator();for(b=this.lastIndex+b;this.lastIndex<b;)this.array[this.lastIndex++]=a.next();this.modCount++;return!0}return!1},"java.util.Collection");j(c$,"clear",function(){this.firstIndex!=this.lastIndex&&(this.fill(this.firstIndex,this.lastIndex),
this.firstIndex=this.lastIndex=0,this.modCount++)});c(c$,"fill",function(a,b){for(var d=b;--d>=a;)this.array[d]=null},"~N,~N");c(c$,"clone",function(){try{var a=V(this,java.util.ArrayList,"clone",[]);a.array=this.array.clone();return a}catch(b){if(q(b,CloneNotSupportedException))return null;throw b;}});j(c$,"contains",function(a){if(null!=a)for(var b=this.firstIndex;b<this.lastIndex;b++){if(a.equals(this.array[b]))return!0}else for(b=this.firstIndex;b<this.lastIndex;b++)if(null==this.array[b])return!0;
return!1},"~O");c(c$,"ensureCapacity",function(a){this.array.length<a&&(0<this.firstIndex?this.growAtFront(a-this.array.length):this.growAtEnd(a-this.array.length))},"~N");j(c$,"get",function(a){if(0<=a&&a<this.size())return this.array[this.firstIndex+a];throw new IndexOutOfBoundsException;},"~N");c(c$,"growAtEnd",($fz=function(a){var b=this.size();if(this.firstIndex>=a-(this.array.length-this.lastIndex))a=this.lastIndex-this.firstIndex,0<b&&(System.arraycopy(this.array,this.firstIndex,this.array,
0,b),this.fill(a<this.firstIndex?this.firstIndex:a,this.array.length)),this.firstIndex=0,this.lastIndex=a;else{var d=Math.floor(b/2);a>d&&(d=a);12>d&&(d=12);a=this.newElementArray(b+d);0<b&&System.arraycopy(this.array,this.firstIndex,a,this.firstIndex,b);this.array=a}},$fz.isPrivate=!0,$fz),"~N");c(c$,"growAtFront",($fz=function(a){var b=this.size();if(this.array.length-this.lastIndex>=a)a=this.array.length-b,0<b&&(System.arraycopy(this.array,this.firstIndex,this.array,a,b),this.fill(this.firstIndex,
this.firstIndex+b>a?a:this.firstIndex+b)),this.firstIndex=a,this.lastIndex=this.array.length;else{var d=Math.floor(b/2);a>d&&(d=a);12>d&&(d=12);a=this.newElementArray(b+d);0<b&&System.arraycopy(this.array,this.firstIndex,a,a.length-b,b);this.firstIndex=a.length-b;this.lastIndex=a.length;this.array=a}},$fz.isPrivate=!0,$fz),"~N");c(c$,"growForInsert",($fz=function(a,b){var d=this.size(),f=Math.floor(d/2);b>f&&(f=b);12>f&&(f=12);var c=this.newElementArray(d+f);if(a<Math.floor(d/2)){var e=c.length-(d+
b);System.arraycopy(this.array,a,c,a+f,d-a);System.arraycopy(this.array,this.firstIndex,c,e,a);this.firstIndex=e;this.lastIndex=c.length}else System.arraycopy(this.array,this.firstIndex,c,0,a),System.arraycopy(this.array,a,c,a+b,d-a),this.firstIndex=0,this.lastIndex+=b;this.array=c},$fz.isPrivate=!0,$fz),"~N,~N");j(c$,"indexOf",function(a){if(null!=a)for(var b=this.firstIndex;b<this.lastIndex;b++){if(a.equals(this.array[b]))return b-this.firstIndex}else for(b=this.firstIndex;b<this.lastIndex;b++)if(null==
this.array[b])return b-this.firstIndex;return-1},"~O");j(c$,"isEmpty",function(){return this.lastIndex==this.firstIndex});j(c$,"lastIndexOf",function(a){if(null!=a)for(var b=this.lastIndex-1;b>=this.firstIndex;b--){if(a.equals(this.array[b]))return b-this.firstIndex}else for(b=this.lastIndex-1;b>=this.firstIndex;b--)if(null==this.array[b])return b-this.firstIndex;return-1},"~O");j(c$,"remove",function(a){var b,d=this.size();if(0<=a&&a<d)if(a==d-1)b=this.array[--this.lastIndex],this.array[this.lastIndex]=
null;else if(0==a)b=this.array[this.firstIndex],this.array[this.firstIndex++]=null;else{var f=this.firstIndex+a;b=this.array[f];a<Math.floor(d/2)?(System.arraycopy(this.array,this.firstIndex,this.array,this.firstIndex+1,a),this.array[this.firstIndex++]=null):(System.arraycopy(this.array,f+1,this.array,f,d-a-1),this.array[--this.lastIndex]=null)}else throw new IndexOutOfBoundsException;this.modCount++;return b},"~N");c(c$,"removeObject",function(a){a=this.indexOf(a);return 0>a?null:this.remove(a)},
"~O");j(c$,"removeRange",function(a,b){if(0<=a&&a<=b&&b<=this.size()){if(a!=b){var d=this.size();b==d?(this.fill(this.firstIndex+a,this.lastIndex),this.lastIndex=this.firstIndex+a):0==a?(this.fill(this.firstIndex,this.firstIndex+b),this.firstIndex+=b):(System.arraycopy(this.array,this.firstIndex+b,this.array,this.firstIndex+a,d-b),d=this.lastIndex+a-b,this.fill(d,this.lastIndex),this.lastIndex=d);this.modCount++}}else throw new IndexOutOfBoundsException;},"~N,~N");j(c$,"set",function(a,b){if(0<=a&&
a<this.size()){var d=this.array[this.firstIndex+a];this.array[this.firstIndex+a]=b;return d}throw new IndexOutOfBoundsException;},"~N,~O");j(c$,"size",function(){return this.lastIndex-this.firstIndex});j(c$,"toArray",function(a){var b=this.size();if(!a||b>a.length)a=Array(b);System.arraycopy(this.array,this.firstIndex,a,0,b);b<a.length&&(a[b]=null);return a},"~O");c(c$,"trimToSize",function(){var a=this.size(),b=this.newElementArray(a);System.arraycopy(this.array,this.firstIndex,b,0,a);this.array=
b;this.firstIndex=0;this.lastIndex=this.array.length})}),v(["java.util.AbstractList","$.RandomAccess"],"java.util.Arrays",["java.lang.ArrayIndexOutOfBoundsException","$.IllegalArgumentException","$.NullPointerException"],function(){c$=A(java.util,"Arrays");c$.sort=j(c$,"sort",function(a,b,d,f){switch(arguments.length){case 1:for(var c=a.sort(function(a,b){return"string"==typeof a||a instanceof Comparable?a.compareTo(b):a-b}),e=0;e<a.length;e++)a[e]=c[e];break;case 2:c=a.sort(function(a,d){return null!=
b?b.compare(a,d):"string"==typeof a||a instanceof Comparable?a.compareTo(d):a-d});for(e=0;e<a.length;e++)a[e]=c[e];break;case 3:var h=b,l=d;this.rangeCheck(a.length,h,l);c=[];for(e=h;e<l;e++)c[e-h]=a[e];c=c.sort(function(a,b){return"string"==typeof a||a instanceof Comparable?a.compareTo(b):a-b});for(e=h;e<l;e++)a[e]=c[e-h];break;case 4:h=b;l=d;b=f;this.rangeCheck(a.length,h,l);c=[];for(e=h;e<l;e++)c[e-h]=a[e];c=c.sort(function(a,d){return null!=b?b.compare(a,d):"string"==typeof a||a instanceof Comparable?
a.compareTo(d):a-d});for(e=h;e<l;e++)a[e]=c[e-h]}});c$.rangeCheck=c(c$,"rangeCheck",($fz=function(a,b,d){if(b>d)throw new IllegalArgumentException("fromIndex("+b+") > toIndex("+d+")");if(0>b)throw new ArrayIndexOutOfBoundsException(b);if(d>a)throw new ArrayIndexOutOfBoundsException(d);},$fz.isPrivate=!0,$fz),"~N,~N,~N");c$.binarySearch=c(c$,"binarySearch",function(a,b){for(var d=0,f=a.length-1;d<=f;){var c=d+f>>1,e=a[c];if(e<b)d=c+1;else if(e>b)f=c-1;else return c}return-(d+1)},"~A,~N");c$.binarySearch=
c(c$,"binarySearch",function(a,b){for(var d=0,f=a.length-1;d<=f;){var c=d+f>>1,e=a[c].compareTo(b);if(0>e)d=c+1;else if(0<e)f=c-1;else return c}return-(d+1)},"~A,~O");c$.binarySearch=c(c$,"binarySearch",function(a,b,d){if(null==d)return java.util.Arrays.binarySearch(a,b);for(var f=0,c=a.length-1;f<=c;){var e=f+c>>1,h=d.compare(a[e],b);if(0>h)f=e+1;else if(0<h)c=e-1;else return e}return-(f+1)},"~A,~O,java.util.Comparator");c$.equals=c(c$,"equals",function(a,b){if(a===b)return!0;if(null==a||null==b)return!1;
var d=a.length;if(b.length!=d)return!1;for(var f=0;f<d;f++){var c=a[f],e=b[f];if(!(null==c?null==e:null==c.equals?c==e:c.equals(e)))return!1}return!0},"~A,~A");c$.fill=j(c$,"fill",function(a,b,d,f){2==arguments.length&&(f=b,b=0,d=a.length);java.util.Arrays.rangeCheck(a.length,b,d);for(var c=b;c<d;c++)a[c]=f});c$.asList=c(c$,"asList",function(a){return new java.util.Arrays.ArrayList(a)},"~A");I(self.c$);c$=s(function(){this.a=null;p(this,arguments)},java.util.Arrays,"ArrayList",java.util.AbstractList,
[java.util.RandomAccess,java.io.Serializable]);t(c$,function(a){K(this,java.util.Arrays.ArrayList,[]);if(null==a)throw new NullPointerException;this.a=a},"~A");j(c$,"size",function(){return this.a.length});c(c$,"toArray",function(){return this.a.clone()});j(c$,"get",function(a){return this.a[a]},"~N");j(c$,"set",function(a,b){var d=this.a[a];this.a[a]=b;return d},"~N,~O");j(c$,"indexOf",function(a){if(null==a)for(var b=0;b<this.a.length;b++){if(null==this.a[b])return b}else for(b=0;b<this.a.length;b++)if(a.equals(this.a[b]))return b;
return-1},"~O");j(c$,"contains",function(a){return-1!=this.indexOf(a)},"~O");c$=L();C(c$,"INSERTIONSORT_THRESHOLD",7)}),v("java.util.AbstractList $.AbstractMap $.AbstractSet $.Collection $.Iterator $.List $.ListIterator $.Map $.RandomAccess $.Set $.SortedMap $.SortedSet java.lang.NullPointerException $.UnsupportedOperationException java.lang.reflect.Array".split(" "),"java.util.Collections","java.lang.ArrayIndexOutOfBoundsException $.ClassCastException $.IllegalArgumentException $.IndexOutOfBoundsException java.util.ArrayList $.Arrays $.Enumeration java.util.Map.Entry java.util.NoSuchElementException $.Random".split(" "),
function(){c$=A(java.util,"Collections");c$.binarySearch=c(c$,"binarySearch",function(a,b){if(null==a)throw new NullPointerException;if(a.isEmpty())return-1;if(!q(a,java.util.RandomAccess)){for(var d=a.listIterator();d.hasNext();){var f;if(0>=(f=b.compareTo(d.next())))return 0==f?d.previousIndex():-d.previousIndex()-1}return-a.size()-1}var d=0,c=a.size(),e=c-1;for(f=-1;d<=e;)if(c=d+e>>1,0<(f=b.compareTo(a.get(c))))d=c+1;else{if(0==f)return c;e=c-1}return-c-(0>f?1:2)},"java.util.List,~O");c$.binarySearch=
c(c$,"binarySearch",function(a,b,d){if(null==d)return java.util.Collections.binarySearch(a,b);if(!q(a,java.util.RandomAccess)){for(var f=a.listIterator();f.hasNext();){var c;if(0>=(c=d.compare(b,f.next())))return 0==c?f.previousIndex():-f.previousIndex()-1}return-a.size()-1}var f=0,e=a.size(),h=e-1;for(c=-1;f<=h;)if(e=f+h>>1,0<(c=d.compare(b,a.get(e))))f=e+1;else{if(0==c)return e;h=e-1}return-e-(0>c?1:2)},"java.util.List,~O,java.util.Comparator");c$.copy=c(c$,"copy",function(a,b){if(a.size()<b.size())throw new ArrayIndexOutOfBoundsException;
for(var d=b.iterator(),f=a.listIterator();d.hasNext();){try{f.next()}catch(c){if(q(c,java.util.NoSuchElementException))throw new ArrayIndexOutOfBoundsException;throw c;}f.set(d.next())}},"java.util.List,java.util.List");c$.enumeration=c(c$,"enumeration",function(a){S("java.util.Collections$1")||java.util.Collections.$Collections$1$(a);return T(java.util.Collections$1,this,null)},"java.util.Collection");c$.fill=c(c$,"fill",function(a,b){for(var d=a.listIterator();d.hasNext();)d.next(),d.set(b)},"java.util.List,~O");
c$.max=c(c$,"max",function(a){a=a.iterator();for(var b=a.next();a.hasNext();){var d=a.next();0>b.compareTo(d)&&(b=d)}return b},"java.util.Collection");c$.max=c(c$,"max",function(a,b){for(var d=a.iterator(),f=d.next();d.hasNext();){var c=d.next();0>b.compare(f,c)&&(f=c)}return f},"java.util.Collection,java.util.Comparator");c$.min=c(c$,"min",function(a){a=a.iterator();for(var b=a.next();a.hasNext();){var d=a.next();0<b.compareTo(d)&&(b=d)}return b},"java.util.Collection");c$.min=c(c$,"min",function(a,
b){for(var d=a.iterator(),f=d.next();d.hasNext();){var c=d.next();0<b.compare(f,c)&&(f=c)}return f},"java.util.Collection,java.util.Comparator");c$.nCopies=c(c$,"nCopies",function(a,b){return new java.util.Collections.CopiesList(a,b)},"~N,~O");c$.reverse=c(c$,"reverse",function(a){var b=a.size(),d=a.listIterator();a=a.listIterator(b);for(var f=0;f<Math.floor(b/2);f++){var c=d.next(),e=a.previous();d.set(e);a.set(c)}},"java.util.List");c$.reverseOrder=c(c$,"reverseOrder",function(){return new java.util.Collections.ReverseComparator});
c$.reverseOrder=c(c$,"reverseOrder",function(a){return null==a?java.util.Collections.reverseOrder():new java.util.Collections.ReverseComparatorWithComparator(a)},"java.util.Comparator");c$.shuffle=c(c$,"shuffle",function(a){java.util.Collections.shuffle(a,new java.util.Random)},"java.util.List");c$.shuffle=c(c$,"shuffle",function(a,b){if(q(a,java.util.RandomAccess))for(f=a.size()-1;0<f;f--)c=b.nextInt()%(f+1),0>c&&(c=-c),a.set(c,a.set(f,a.get(c)));else{for(var d=a.toArray(),f=d.length-1;0<f;f--){var c=
b.nextInt()%(f+1);0>c&&(c=-c);var e=d[f];d[f]=d[c];d[c]=e}f=0;for(c=a.listIterator();c.hasNext();)c.next(),c.set(d[f++])}},"java.util.List,java.util.Random");c$.singleton=c(c$,"singleton",function(a){return new java.util.Collections.SingletonSet(a)},"~O");c$.singletonList=c(c$,"singletonList",function(a){return new java.util.Collections.SingletonList(a)},"~O");c$.singletonMap=c(c$,"singletonMap",function(a,b){return new java.util.Collections.SingletonMap(a,b)},"~O,~O");c$.sort=c(c$,"sort",function(a){var b=
a.toArray();java.util.Arrays.sort(b);var d=0;for(a=a.listIterator();a.hasNext();)a.next(),a.set(b[d++])},"java.util.List");c$.sort=c(c$,"sort",function(a,b){var d=a.toArray(Array(a.size()));java.util.Arrays.sort(d,b);for(var f=0,c=a.listIterator();c.hasNext();)c.next(),c.set(d[f++])},"java.util.List,java.util.Comparator");c$.swap=c(c$,"swap",function(a,b,d){if(null==a)throw new NullPointerException;b!=d&&a.set(d,a.set(b,a.get(d)))},"java.util.List,~N,~N");c$.replaceAll=c(c$,"replaceAll",function(a,
b,d){for(var f,c=!1;-1<(f=a.indexOf(b));)c=!0,a.set(f,d);return c},"java.util.List,~O,~O");c$.rotate=c(c$,"rotate",function(a,b){var d=a.size();if(0!=d){var f;f=0<b?b%d:d- -1*(b%d);if(!(0==f||f==d))if(q(a,java.util.RandomAccess))for(var c=a.get(0),e=0,h=0,l=0;l<d;l++)e=(e+f)%d,c=a.set(e,c),e==h&&(e=++h,c=a.get(h));else c=(d-f)%d,f=a.subList(0,c),d=a.subList(c,d),java.util.Collections.reverse(f),java.util.Collections.reverse(d),java.util.Collections.reverse(a)}},"java.util.List,~N");c$.indexOfSubList=
c(c$,"indexOfSubList",function(a,b){var d=a.size(),f=b.size();if(f>d)return-1;if(0==f)return 0;var c=b.get(0),e=a.indexOf(c);if(-1==e)return-1;for(;e<d&&d-e>=f;){var h=a.listIterator(e);if(null==c?null==h.next():c.equals(h.next())){for(var l=b.listIterator(1),k=!1;l.hasNext();){var j=l.next();if(!h.hasNext())return-1;if(null==j?null!=h.next():!j.equals(h.next())){k=!0;break}}if(!k)return e}e++}return-1},"java.util.List,java.util.List");c$.lastIndexOfSubList=c(c$,"lastIndexOfSubList",function(a,b){var d=
b.size(),f=a.size();if(d>f)return-1;if(0==d)return f;for(var f=b.get(d-1),c=a.lastIndexOf(f);-1<c&&c+1>=d;){var e=a.listIterator(c+1);if(null==f?null==e.previous():f.equals(e.previous())){for(var h=b.listIterator(d-1),l=!1;h.hasPrevious();){var k=h.previous();if(!e.hasPrevious())return-1;if(null==k?null!=e.previous():!k.equals(e.previous())){l=!0;break}}if(!l)return e.nextIndex()}c--}return-1},"java.util.List,java.util.List");c$.list=c(c$,"list",function(a){for(var b=new java.util.ArrayList;a.hasMoreElements();)b.add(a.nextElement());
return b},"java.util.Enumeration");c$.synchronizedCollection=c(c$,"synchronizedCollection",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.SynchronizedCollection(a)},"java.util.Collection");c$.synchronizedList=c(c$,"synchronizedList",function(a){if(null==a)throw new NullPointerException;return q(a,java.util.RandomAccess)?new java.util.Collections.SynchronizedRandomAccessList(a):new java.util.Collections.SynchronizedList(a)},"java.util.List");c$.synchronizedMap=
c(c$,"synchronizedMap",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.SynchronizedMap(a)},"java.util.Map");c$.synchronizedSet=c(c$,"synchronizedSet",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.SynchronizedSet(a)},"java.util.Set");c$.synchronizedSortedMap=c(c$,"synchronizedSortedMap",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.SynchronizedSortedMap(a)},"java.util.SortedMap");
c$.synchronizedSortedSet=c(c$,"synchronizedSortedSet",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.SynchronizedSortedSet(a)},"java.util.SortedSet");c$.unmodifiableCollection=c(c$,"unmodifiableCollection",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.UnmodifiableCollection(a)},"java.util.Collection");c$.unmodifiableList=c(c$,"unmodifiableList",function(a){if(null==a)throw new NullPointerException;return q(a,java.util.RandomAccess)?
new java.util.Collections.UnmodifiableRandomAccessList(a):new java.util.Collections.UnmodifiableList(a)},"java.util.List");c$.unmodifiableMap=c(c$,"unmodifiableMap",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.UnmodifiableMap(a)},"java.util.Map");c$.unmodifiableSet=c(c$,"unmodifiableSet",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.UnmodifiableSet(a)},"java.util.Set");c$.unmodifiableSortedMap=c(c$,"unmodifiableSortedMap",
function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.UnmodifiableSortedMap(a)},"java.util.SortedMap");c$.unmodifiableSortedSet=c(c$,"unmodifiableSortedSet",function(a){if(null==a)throw new NullPointerException;return new java.util.Collections.UnmodifiableSortedSet(a)},"java.util.SortedSet");c$.frequency=c(c$,"frequency",function(a,b){if(null==a)throw new NullPointerException;if(a.isEmpty())return 0;for(var d=0,f=a.iterator();f.hasNext();){var c=f.next();(null==b?
null==c:b.equals(c))&&d++}return d},"java.util.Collection,~O");c$.emptyList=c(c$,"emptyList",function(){return java.util.Collections.EMPTY_LIST});c$.emptySet=c(c$,"emptySet",function(){return java.util.Collections.EMPTY_SET});c$.emptyMap=c(c$,"emptyMap",function(){return java.util.Collections.EMPTY_MAP});c$.checkedCollection=c(c$,"checkedCollection",function(a,b){return new java.util.Collections.CheckedCollection(a,b)},"java.util.Collection,Class");c$.checkedMap=c(c$,"checkedMap",function(a,b,d){return new java.util.Collections.CheckedMap(a,
b,d)},"java.util.Map,Class,Class");c$.checkedList=c(c$,"checkedList",function(a,b){return q(a,java.util.RandomAccess)?new java.util.Collections.CheckedRandomAccessList(a,b):new java.util.Collections.CheckedList(a,b)},"java.util.List,Class");c$.checkedSet=c(c$,"checkedSet",function(a,b){return new java.util.Collections.CheckedSet(a,b)},"java.util.Set,Class");c$.checkedSortedMap=c(c$,"checkedSortedMap",function(a,b,d){return new java.util.Collections.CheckedSortedMap(a,b,d)},"java.util.SortedMap,Class,Class");
c$.checkedSortedSet=c(c$,"checkedSortedSet",function(a,b){return new java.util.Collections.CheckedSortedSet(a,b)},"java.util.SortedSet,Class");c$.addAll=c(c$,"addAll",function(a,b){for(var d=!1,f=0;f<b.length;f++)d=(new Boolean(d|a.add(b[f]))).valueOf();return d},"java.util.Collection,~A");c$.disjoint=c(c$,"disjoint",function(a,b){if(q(a,java.util.Set)&&!q(b,java.util.Set)||b.size()>a.size()){var d=a;a=b;b=d}for(d=a.iterator();d.hasNext();)if(b.contains(d.next()))return!1;return!0},"java.util.Collection,java.util.Collection");
c$.checkType=c(c$,"checkType",function(a,b){if(!b.isInstance(a))throw new ClassCastException("Attempt to insert "+a.getClass()+" element into collection with element type "+b);return a},"~O,Class");c$.$Collections$1$=function(a){I(self.c$);c$=s(function(){R(this,arguments);this.it=null;p(this,arguments)},java.util,"Collections$1",null,java.util.Enumeration);N(c$,function(){this.it=a.iterator()});c(c$,"hasMoreElements",function(){return this.it.hasNext()});c(c$,"nextElement",function(){return this.it.next()});
c$=L()};I(self.c$);c$=s(function(){this.n=0;this.element=null;p(this,arguments)},java.util.Collections,"CopiesList",java.util.AbstractList,java.io.Serializable);t(c$,function(a,b){K(this,java.util.Collections.CopiesList,[]);if(0>a)throw new IllegalArgumentException;this.n=a;this.element=b},"~N,~O");j(c$,"contains",function(a){return null==this.element?null==a:this.element.equals(a)},"~O");j(c$,"size",function(){return this.n});j(c$,"get",function(a){if(0<=a&&a<this.n)return this.element;throw new IndexOutOfBoundsException;
},"~N");c$=L();I(self.c$);c$=A(java.util.Collections,"EmptyList",java.util.AbstractList,java.io.Serializable);j(c$,"contains",function(){return!1},"~O");j(c$,"size",function(){return 0});j(c$,"get",function(){throw new IndexOutOfBoundsException;},"~N");c$=L();I(self.c$);c$=A(java.util.Collections,"EmptySet",java.util.AbstractSet,java.io.Serializable);j(c$,"contains",function(){return!1},"~O");j(c$,"size",function(){return 0});j(c$,"iterator",function(){return S("java.util.Collections$EmptySet$1")?
0:java.util.Collections.EmptySet.$Collections$EmptySet$1$(),T(java.util.Collections$EmptySet$1,this,null)});c$.$Collections$EmptySet$1$=function(){I(self.c$);c$=da(java.util,"Collections$EmptySet$1",null,java.util.Iterator);j(c$,"hasNext",function(){return!1});j(c$,"next",function(){throw new java.util.NoSuchElementException;});j(c$,"remove",function(){throw new UnsupportedOperationException;});c$=L()};c$=L();I(self.c$);c$=A(java.util.Collections,"EmptyMap",java.util.AbstractMap,java.io.Serializable);
j(c$,"containsKey",function(){return!1},"~O");j(c$,"containsValue",function(){return!1},"~O");j(c$,"entrySet",function(){return java.util.Collections.EMPTY_SET});j(c$,"get",function(){return null},"~O");j(c$,"keySet",function(){return java.util.Collections.EMPTY_SET});j(c$,"values",function(){return java.util.Collections.EMPTY_LIST});c$=L();I(self.c$);c$=A(java.util.Collections,"ReverseComparator",null,[java.util.Comparator,java.io.Serializable]);j(c$,"compare",function(a,b){return b.compareTo(a)},
"~O,~O");c$=L();I(self.c$);c$=s(function(){this.comparator=null;p(this,arguments)},java.util.Collections,"ReverseComparatorWithComparator",null,[java.util.Comparator,java.io.Serializable]);t(c$,function(a){this.comparator=a},"java.util.Comparator");c(c$,"compare",function(a,b){return this.comparator.compare(b,a)},"~O,~O");c$=L();I(self.c$);c$=s(function(){this.element=null;p(this,arguments)},java.util.Collections,"SingletonSet",java.util.AbstractSet,java.io.Serializable);t(c$,function(a){K(this,java.util.Collections.SingletonSet,
[]);this.element=a},"~O");j(c$,"contains",function(a){return null==this.element?null==a:this.element.equals(a)},"~O");j(c$,"size",function(){return 1});j(c$,"iterator",function(){return S("java.util.Collections$SingletonSet$1")?0:java.util.Collections.SingletonSet.$Collections$SingletonSet$1$(),T(java.util.Collections$SingletonSet$1,this,null)});c$.$Collections$SingletonSet$1$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.$hasNext=!0;p(this,arguments)},java.util,"Collections$SingletonSet$1",
null,java.util.Iterator);j(c$,"hasNext",function(){return this.$hasNext});j(c$,"next",function(){if(this.$hasNext)return this.$hasNext=!1,this.b$["java.util.Collections.SingletonSet"].element;throw new java.util.NoSuchElementException;});j(c$,"remove",function(){throw new UnsupportedOperationException;});c$=L()};c$=L();I(self.c$);c$=s(function(){this.element=null;p(this,arguments)},java.util.Collections,"SingletonList",java.util.AbstractList,java.io.Serializable);t(c$,function(a){K(this,java.util.Collections.SingletonList,
[]);this.element=a},"~O");j(c$,"contains",function(a){return null==this.element?null==a:this.element.equals(a)},"~O");j(c$,"get",function(a){if(0==a)return this.element;throw new IndexOutOfBoundsException;},"~N");j(c$,"size",function(){return 1});c$=L();I(self.c$);c$=s(function(){this.v=this.k=null;p(this,arguments)},java.util.Collections,"SingletonMap",java.util.AbstractMap,java.io.Serializable);t(c$,function(a,b){K(this,java.util.Collections.SingletonMap,[]);this.k=a;this.v=b},"~O,~O");j(c$,"containsKey",
function(a){return null==this.k?null==a:this.k.equals(a)},"~O");j(c$,"containsValue",function(a){return null==this.v?null==a:this.v.equals(a)},"~O");j(c$,"get",function(a){return this.containsKey(a)?this.v:null},"~O");j(c$,"size",function(){return 1});j(c$,"entrySet",function(){return S("java.util.Collections$SingletonMap$1")?0:java.util.Collections.SingletonMap.$Collections$SingletonMap$1$(),T(java.util.Collections$SingletonMap$1,this,null)});c$.$Collections$SingletonMap$1$=function(){I(self.c$);
c$=da(java.util,"Collections$SingletonMap$1",java.util.AbstractSet);j(c$,"contains",function(a){return q(a,java.util.Map.Entry)?this.b$["java.util.Collections.SingletonMap"].containsKey(a.getKey())&&this.b$["java.util.Collections.SingletonMap"].containsValue(a.getValue()):!1},"~O");j(c$,"size",function(){return 1});j(c$,"iterator",function(){return S("java.util.Collections$SingletonMap$1$1")?0:java.util.Collections.$Collections$SingletonMap$1$1$(),T(java.util.Collections$SingletonMap$1$1,this,null)});
c$=L()};c$.$Collections$SingletonMap$1$1$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.$hasNext=!0;p(this,arguments)},java.util,"Collections$SingletonMap$1$1",null,java.util.Iterator);j(c$,"hasNext",function(){return this.$hasNext});j(c$,"next",function(){if(this.$hasNext)return this.$hasNext=!1,S("java.util.Collections$SingletonMap$1$1$1")?0:java.util.Collections.$Collections$SingletonMap$1$1$1$(),T(java.util.Collections$SingletonMap$1$1$1,this,null);throw new java.util.NoSuchElementException;
});j(c$,"remove",function(){throw new UnsupportedOperationException;});c$=L()};c$.$Collections$SingletonMap$1$1$1$=function(){I(self.c$);c$=da(java.util,"Collections$SingletonMap$1$1$1",null,java.util.Map.Entry);j(c$,"equals",function(a){return this.b$["java.util.Collections$SingletonMap$1"].contains(a)},"~O");j(c$,"getKey",function(){return this.b$["java.util.Collections.SingletonMap"].k});j(c$,"getValue",function(){return this.b$["java.util.Collections.SingletonMap"].v});j(c$,"hashCode",function(){return(null==
this.b$["java.util.Collections.SingletonMap"].k?0:this.b$["java.util.Collections.SingletonMap"].k.hashCode())^(null==this.b$["java.util.Collections.SingletonMap"].v?0:this.b$["java.util.Collections.SingletonMap"].v.hashCode())});j(c$,"setValue",function(){throw new UnsupportedOperationException;},"~O");c$=L()};c$=L();I(self.c$);c$=s(function(){this.mutex=this.c=null;p(this,arguments)},java.util.Collections,"SynchronizedCollection",null,[java.util.Collection,java.io.Serializable]);t(c$,function(a){this.c=
a;this.mutex=this},"java.util.Collection");t(c$,function(a,b){this.c=a;this.mutex=b},"java.util.Collection,~O");c(c$,"add",function(a){return this.c.add(a)},"~O");c(c$,"addAll",function(a){return this.c.addAll(a)},"java.util.Collection");c(c$,"clear",function(){this.c.clear()});c(c$,"contains",function(a){return this.c.contains(a)},"~O");c(c$,"containsAll",function(a){return this.c.containsAll(a)},"java.util.Collection");c(c$,"isEmpty",function(){return this.c.isEmpty()});c(c$,"iterator",function(){return this.c.iterator()});
c(c$,"remove",function(a){return this.c.remove(a)},"~O");c(c$,"removeAll",function(a){return this.c.removeAll(a)},"java.util.Collection");c(c$,"retainAll",function(a){return this.c.retainAll(a)},"java.util.Collection");c(c$,"size",function(){return this.c.size()});c(c$,"toArray",function(){return this.c.toArray()});c(c$,"toString",function(){return this.c.toString()});c(c$,"toArray",function(a){return this.c.toArray(a)},"~A");c$=L();I(self.c$);c$=A(java.util.Collections,"SynchronizedRandomAccessList",
java.util.Collections.SynchronizedList,java.util.RandomAccess);j(c$,"subList",function(a,b){return new java.util.Collections.SynchronizedRandomAccessList(this.list.subList(a,b),this.mutex)},"~N,~N");c$=L();I(self.c$);c$=s(function(){this.list=null;p(this,arguments)},java.util.Collections,"SynchronizedList",java.util.Collections.SynchronizedCollection,java.util.List);t(c$,function(a){K(this,java.util.Collections.SynchronizedList,[a]);this.list=a},"java.util.List");t(c$,function(a,b){K(this,java.util.Collections.SynchronizedList,
[a,b]);this.list=a},"java.util.List,~O");c(c$,"add",function(a,b){this.list.add(a,b)},"~N,~O");c(c$,"addAll",function(a,b){return this.list.addAll(a,b)},"~N,java.util.Collection");j(c$,"equals",function(a){return this.list.equals(a)},"~O");c(c$,"get",function(a){return this.list.get(a)},"~N");j(c$,"hashCode",function(){return this.list.hashCode()});c(c$,"indexOf",function(a){return this.list.indexOf(a)},"~O");c(c$,"lastIndexOf",function(a){return this.list.lastIndexOf(a)},"~O");c(c$,"listIterator",
function(a){a||(a=0);return this.list.listIterator(a)},"~N");c(c$,"remove",function(a){return this.list.remove(a)},"~N");c(c$,"set",function(a,b){return this.list.set(a,b)},"~N,~O");c(c$,"subList",function(a,b){return new java.util.Collections.SynchronizedList(this.list.subList(a,b),this.mutex)},"~N,~N");c$=L();I(self.c$);c$=s(function(){this.mutex=this.m=null;p(this,arguments)},java.util.Collections,"SynchronizedMap",null,[java.util.Map,java.io.Serializable]);t(c$,function(a){this.m=a;this.mutex=
this},"java.util.Map");t(c$,function(a,b){this.m=a;this.mutex=b},"java.util.Map,~O");c(c$,"clear",function(){this.m.clear()});c(c$,"containsKey",function(a){return this.m.containsKey(a)},"~O");c(c$,"containsValue",function(a){return this.m.containsValue(a)},"~O");c(c$,"entrySet",function(){return new java.util.Collections.SynchronizedSet(this.m.entrySet(),this.mutex)});j(c$,"equals",function(a){return this.m.equals(a)},"~O");c(c$,"get",function(a){return this.m.get(a)},"~O");j(c$,"hashCode",function(){return this.m.hashCode()});
c(c$,"isEmpty",function(){return this.m.isEmpty()});c(c$,"keySet",function(){return new java.util.Collections.SynchronizedSet(this.m.keySet(),this.mutex)});c(c$,"put",function(a,b){return this.m.put(a,b)},"~O,~O");c(c$,"putAll",function(a){this.m.putAll(a)},"java.util.Map");c(c$,"remove",function(a){return this.m.remove(a)},"~O");c(c$,"size",function(){return this.m.size()});c(c$,"values",function(){return new java.util.Collections.SynchronizedCollection(this.m.values(),this.mutex)});c(c$,"toString",
function(){return this.m.toString()});c$=L();I(self.c$);c$=A(java.util.Collections,"SynchronizedSet",java.util.Collections.SynchronizedCollection,java.util.Set);j(c$,"equals",function(a){return this.c.equals(a)},"~O");j(c$,"hashCode",function(){return this.c.hashCode()});c$=L();I(self.c$);c$=s(function(){this.sm=null;p(this,arguments)},java.util.Collections,"SynchronizedSortedMap",java.util.Collections.SynchronizedMap,java.util.SortedMap);t(c$,function(a){K(this,java.util.Collections.SynchronizedSortedMap,
[a]);this.sm=a},"java.util.SortedMap");t(c$,function(a,b){K(this,java.util.Collections.SynchronizedSortedMap,[a,b]);this.sm=a},"java.util.SortedMap,~O");c(c$,"comparator",function(){return this.sm.comparator()});c(c$,"firstKey",function(){return this.sm.firstKey()});c(c$,"headMap",function(a){return new java.util.Collections.SynchronizedSortedMap(this.sm.headMap(a),this.mutex)},"~O");c(c$,"lastKey",function(){return this.sm.lastKey()});c(c$,"subMap",function(a,b){return new java.util.Collections.SynchronizedSortedMap(this.sm.subMap(a,
b),this.mutex)},"~O,~O");c(c$,"tailMap",function(a){return new java.util.Collections.SynchronizedSortedMap(this.sm.tailMap(a),this.mutex)},"~O");c$=L();I(self.c$);c$=s(function(){this.ss=null;p(this,arguments)},java.util.Collections,"SynchronizedSortedSet",java.util.Collections.SynchronizedSet,java.util.SortedSet);t(c$,function(a){K(this,java.util.Collections.SynchronizedSortedSet,[a]);this.ss=a},"java.util.SortedSet");t(c$,function(a,b){K(this,java.util.Collections.SynchronizedSortedSet,[a,b]);this.ss=
a},"java.util.SortedSet,~O");c(c$,"comparator",function(){return this.ss.comparator()});c(c$,"first",function(){return this.ss.first()});c(c$,"headSet",function(a){return new java.util.Collections.SynchronizedSortedSet(this.ss.headSet(a),this.mutex)},"~O");c(c$,"last",function(){return this.ss.last()});c(c$,"subSet",function(a,b){return new java.util.Collections.SynchronizedSortedSet(this.ss.subSet(a,b),this.mutex)},"~O,~O");c(c$,"tailSet",function(a){return new java.util.Collections.SynchronizedSortedSet(this.ss.tailSet(a),
this.mutex)},"~O");c$=L();I(self.c$);c$=s(function(){this.c=null;p(this,arguments)},java.util.Collections,"UnmodifiableCollection",null,[java.util.Collection,java.io.Serializable]);t(c$,function(a){this.c=a},"java.util.Collection");j(c$,"add",function(){throw new UnsupportedOperationException;},"~O");j(c$,"addAll",function(){throw new UnsupportedOperationException;},"java.util.Collection");j(c$,"clear",function(){throw new UnsupportedOperationException;});c(c$,"contains",function(a){return this.c.contains(a)},
"~O");c(c$,"containsAll",function(a){return this.c.containsAll(a)},"java.util.Collection");c(c$,"isEmpty",function(){return this.c.isEmpty()});c(c$,"iterator",function(){return S("java.util.Collections$UnmodifiableCollection$1")?0:java.util.Collections.UnmodifiableCollection.$Collections$UnmodifiableCollection$1$(),T(java.util.Collections$UnmodifiableCollection$1,this,null)});j(c$,"remove",function(){throw new UnsupportedOperationException;},"~O");j(c$,"removeAll",function(){throw new UnsupportedOperationException;
},"java.util.Collection");j(c$,"retainAll",function(){throw new UnsupportedOperationException;},"java.util.Collection");c(c$,"size",function(){return this.c.size()});c(c$,"toArray",function(){return this.c.toArray()});c(c$,"toArray",function(a){return this.c.toArray(a)},"~A");c(c$,"toString",function(){return this.c.toString()});c$.$Collections$UnmodifiableCollection$1$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.iterator=null;p(this,arguments)},java.util,"Collections$UnmodifiableCollection$1",
null,java.util.Iterator);N(c$,function(){this.iterator=this.b$["java.util.Collections.UnmodifiableCollection"].c.iterator()});c(c$,"hasNext",function(){return this.iterator.hasNext()});c(c$,"next",function(){return this.iterator.next()});j(c$,"remove",function(){throw new UnsupportedOperationException;});c$=L()};c$=L();I(self.c$);c$=A(java.util.Collections,"UnmodifiableRandomAccessList",java.util.Collections.UnmodifiableList,java.util.RandomAccess);j(c$,"subList",function(a,b){return new java.util.Collections.UnmodifiableRandomAccessList(this.list.subList(a,
b))},"~N,~N");c$=L();I(self.c$);c$=s(function(){this.list=null;p(this,arguments)},java.util.Collections,"UnmodifiableList",java.util.Collections.UnmodifiableCollection,java.util.List);t(c$,function(a){K(this,java.util.Collections.UnmodifiableList,[a]);this.list=a},"java.util.List");c(c$,"add",function(){throw new UnsupportedOperationException;},"~N,~O");c(c$,"addAll",function(){throw new UnsupportedOperationException;},"~N,java.util.Collection");j(c$,"equals",function(a){return this.list.equals(a)},
"~O");c(c$,"get",function(a){return this.list.get(a)},"~N");j(c$,"hashcode",function(){return this.list.hashCode()});c(c$,"indexOf",function(a){return this.list.indexOf(a)},"~O");c(c$,"lastIndexOf",function(a){return this.list.lastIndexOf(a)},"~O");c(c$,"listIterator",function(){return S("java.util.Collections$UnmodifiableList$1")?0:java.util.Collections.UnmodifiableList.$Collections$UnmodifiableList$1$(),T(java.util.Collections$UnmodifiableList$1,this,null)},"~N");c(c$,"remove",function(){throw new UnsupportedOperationException;
},"~N");j(c$,"set",function(){throw new UnsupportedOperationException;},"~N,~O");c(c$,"subList",function(a,b){return new java.util.Collections.UnmodifiableList(this.list.subList(a,b))},"~N,~N");c$.$Collections$UnmodifiableList$1$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.iterator=null;p(this,arguments)},java.util,"Collections$UnmodifiableList$1",null,java.util.ListIterator);N(c$,function(){this.iterator=this.b$["java.util.Collections.UnmodifiableList"].list.listIterator(location)});
j(c$,"add",function(){throw new UnsupportedOperationException;},"~O");c(c$,"hasNext",function(){return this.iterator.hasNext()});c(c$,"hasPrevious",function(){return this.iterator.hasPrevious()});c(c$,"next",function(){return this.iterator.next()});c(c$,"nextIndex",function(){return this.iterator.nextIndex()});c(c$,"previous",function(){return this.iterator.previous()});c(c$,"previousIndex",function(){return this.iterator.previousIndex()});j(c$,"remove",function(){throw new UnsupportedOperationException;
});j(c$,"set",function(){throw new UnsupportedOperationException;},"~O");c$=L()};c$=L();I(self.c$);c$=s(function(){this.m=null;p(this,arguments)},java.util.Collections,"UnmodifiableMap",null,[java.util.Map,java.io.Serializable]);t(c$,function(a){this.m=a},"java.util.Map");j(c$,"clear",function(){throw new UnsupportedOperationException;});c(c$,"containsKey",function(a){return this.m.containsKey(a)},"~O");c(c$,"containsValue",function(a){return this.m.containsValue(a)},"~O");c(c$,"entrySet",function(){return new java.util.Collections.UnmodifiableMap.UnmodifiableEntrySet(this.m.entrySet())});
j(c$,"equals",function(a){return this.m.equals(a)},"~O");c(c$,"get",function(a){return this.m.get(a)},"~O");j(c$,"hashcode",function(){return this.m.hashCode()});c(c$,"isEmpty",function(){return this.m.isEmpty()});c(c$,"keySet",function(){return new java.util.Collections.UnmodifiableSet(this.m.keySet())});j(c$,"put",function(){throw new UnsupportedOperationException;},"~O,~O");j(c$,"putAll",function(){throw new UnsupportedOperationException;},"java.util.Map");j(c$,"remove",function(){throw new UnsupportedOperationException;
},"~O");c(c$,"size",function(){return this.m.size()});c(c$,"values",function(){return new java.util.Collections.UnmodifiableCollection(this.m.values())});c(c$,"toString",function(){return this.m.toString()});I(self.c$);c$=A(java.util.Collections.UnmodifiableMap,"UnmodifiableEntrySet",java.util.Collections.UnmodifiableSet);j(c$,"iterator",function(){return S("java.util.Collections$UnmodifiableMap$UnmodifiableEntrySet$1")?0:java.util.Collections.UnmodifiableMap.UnmodifiableEntrySet.$Collections$UnmodifiableMap$UnmodifiableEntrySet$1$(),
T(java.util.Collections$UnmodifiableMap$UnmodifiableEntrySet$1,this,null)});c(c$,"toArray",function(){for(var a=this.c.size(),b=Array(a),d=this.iterator();0<=--a;)b[a]=d.next();return b});c(c$,"toArray",function(a){var b=this.c.size(),d=0,f=this.iterator();b>a.length&&(a=a.getClass().getComponentType(),a=java.lang.reflect.Array.newInstance(a,b));for(;d<b;)a[d++]=f.next();d<a.length&&(a[d]=null);return a},"~A");c$.$Collections$UnmodifiableMap$UnmodifiableEntrySet$1$=function(){I(self.c$);c$=s(function(){R(this,
arguments);this.iterator=null;p(this,arguments)},java.util,"Collections$UnmodifiableMap$UnmodifiableEntrySet$1",null,java.util.Iterator);N(c$,function(){this.iterator=this.b$["java.util.Collections.UnmodifiableMap.UnmodifiableEntrySet"].c.iterator()});c(c$,"hasNext",function(){return this.iterator.hasNext()});c(c$,"next",function(){return new java.util.Collections.UnmodifiableMap.UnmodifiableEntrySet.UnmodifiableMapEntry(this.iterator.next())});j(c$,"remove",function(){throw new UnsupportedOperationException;
});c$=L()};I(self.c$);c$=s(function(){this.mapEntry=null;p(this,arguments)},java.util.Collections.UnmodifiableMap.UnmodifiableEntrySet,"UnmodifiableMapEntry",null,java.util.Map.Entry);t(c$,function(a){this.mapEntry=a},"java.util.Map.Entry");j(c$,"equals",function(a){return this.mapEntry.equals(a)},"~O");c(c$,"getKey",function(){return this.mapEntry.getKey()});c(c$,"getValue",function(){return this.mapEntry.getValue()});j(c$,"hashcode",function(){return this.mapEntry.hashCode()});j(c$,"setValue",function(){throw new UnsupportedOperationException;
},"~O");c(c$,"toString",function(){return this.mapEntry.toString()});c$=L();c$=L();c$=L();I(self.c$);c$=A(java.util.Collections,"UnmodifiableSet",java.util.Collections.UnmodifiableCollection,java.util.Set);j(c$,"equals",function(a){return this.c.equals(a)},"~O");j(c$,"hashCode",function(){return this.c.hashCode()});c$=L();I(self.c$);c$=s(function(){this.sm=null;p(this,arguments)},java.util.Collections,"UnmodifiableSortedMap",java.util.Collections.UnmodifiableMap,java.util.SortedMap);t(c$,function(a){K(this,
java.util.Collections.UnmodifiableSortedMap,[a]);this.sm=a},"java.util.SortedMap");c(c$,"comparator",function(){return this.sm.comparator()});c(c$,"firstKey",function(){return this.sm.firstKey()});c(c$,"headMap",function(a){return new java.util.Collections.UnmodifiableSortedMap(this.sm.headMap(a))},"~O");c(c$,"lastKey",function(){return this.sm.lastKey()});c(c$,"subMap",function(a,b){return new java.util.Collections.UnmodifiableSortedMap(this.sm.subMap(a,b))},"~O,~O");c(c$,"tailMap",function(a){return new java.util.Collections.UnmodifiableSortedMap(this.sm.tailMap(a))},
"~O");c$=L();I(self.c$);c$=s(function(){this.ss=null;p(this,arguments)},java.util.Collections,"UnmodifiableSortedSet",java.util.Collections.UnmodifiableSet,java.util.SortedSet);t(c$,function(a){K(this,java.util.Collections.UnmodifiableSortedSet,[a]);this.ss=a},"java.util.SortedSet");c(c$,"comparator",function(){return this.ss.comparator()});c(c$,"first",function(){return this.ss.first()});c(c$,"headSet",function(a){return new java.util.Collections.UnmodifiableSortedSet(this.ss.headSet(a))},"~O");
c(c$,"last",function(){return this.ss.last()});c(c$,"subSet",function(a,b){return new java.util.Collections.UnmodifiableSortedSet(this.ss.subSet(a,b))},"~O,~O");c(c$,"tailSet",function(a){return new java.util.Collections.UnmodifiableSortedSet(this.ss.tailSet(a))},"~O");c$=L();I(self.c$);c$=s(function(){this.type=this.c=null;p(this,arguments)},java.util.Collections,"CheckedCollection",null,[java.util.Collection,java.io.Serializable]);t(c$,function(a,b){if(null==a||null==b)throw new NullPointerException;
this.c=a;this.type=b},"java.util.Collection,Class");c(c$,"size",function(){return this.c.size()});c(c$,"isEmpty",function(){return this.c.isEmpty()});c(c$,"contains",function(a){return this.c.contains(a)},"~O");c(c$,"iterator",function(){var a=this.c.iterator();q(a,java.util.ListIterator)&&(a=new java.util.Collections.CheckedListIterator(a,this.type));return a});c(c$,"toArray",function(){return this.c.toArray()});c(c$,"toArray",function(a){return this.c.toArray(a)},"~A");c(c$,"add",function(a){return this.c.add(java.util.Collections.checkType(a,
this.type))},"~O");c(c$,"remove",function(a){return this.c.remove(a)},"~O");c(c$,"containsAll",function(a){return this.c.containsAll(a)},"java.util.Collection");j(c$,"addAll",function(a){var b=a.size();if(0==b)return!1;var d=Array(b);a=a.iterator();for(var f=0;f<b;f++)d[f]=java.util.Collections.checkType(a.next(),this.type);a=!1;for(f=0;f<b;f++)a=(new Boolean(a|this.c.add(d[f]))).valueOf();return a},"java.util.Collection");c(c$,"removeAll",function(a){return this.c.removeAll(a)},"java.util.Collection");
c(c$,"retainAll",function(a){return this.c.retainAll(a)},"java.util.Collection");c(c$,"clear",function(){this.c.clear()});c(c$,"toString",function(){return this.c.toString()});c$=L();I(self.c$);c$=s(function(){this.type=this.i=null;p(this,arguments)},java.util.Collections,"CheckedListIterator",null,java.util.ListIterator);t(c$,function(a,b){this.i=a;this.type=b},"java.util.ListIterator,Class");c(c$,"hasNext",function(){return this.i.hasNext()});c(c$,"next",function(){return this.i.next()});c(c$,"remove",
function(){this.i.remove()});c(c$,"hasPrevious",function(){return this.i.hasPrevious()});c(c$,"previous",function(){return this.i.previous()});c(c$,"nextIndex",function(){return this.i.nextIndex()});c(c$,"previousIndex",function(){return this.i.previousIndex()});c(c$,"set",function(a){this.i.set(java.util.Collections.checkType(a,this.type))},"~O");c(c$,"add",function(a){this.i.add(java.util.Collections.checkType(a,this.type))},"~O");c$=L();I(self.c$);c$=s(function(){this.l=null;p(this,arguments)},
java.util.Collections,"CheckedList",java.util.Collections.CheckedCollection,java.util.List);t(c$,function(a,b){K(this,java.util.Collections.CheckedList,[a,b]);this.l=a},"java.util.List,Class");c(c$,"addAll",function(a,b){var d=b.size();if(0==d)return!1;for(var f=Array(d),c=b.iterator(),e=0;e<d;e++)f[e]=java.util.Collections.checkType(c.next(),this.type);return this.l.addAll(a,java.util.Arrays.asList(f))},"~N,java.util.Collection");c(c$,"get",function(a){return this.l.get(a)},"~N");c(c$,"set",function(a,
b){return this.l.set(a,java.util.Collections.checkType(b,this.type))},"~N,~O");c(c$,"add",function(a,b){this.l.add(a,java.util.Collections.checkType(b,this.type))},"~N,~O");c(c$,"remove",function(a){return this.l.remove(a)},"~N");c(c$,"indexOf",function(a){return this.l.indexOf(a)},"~O");c(c$,"lastIndexOf",function(a){return this.l.lastIndexOf(a)},"~O");c(c$,"listIterator",function(a){a||(a=0);return new java.util.Collections.CheckedListIterator(this.l.listIterator(a),this.type)},"~N");c(c$,"subList",
function(a,b){return java.util.Collections.checkedList(this.l.subList(a,b),this.type)},"~N,~N");j(c$,"equals",function(a){return this.l.equals(a)},"~O");j(c$,"hashcode",function(){return this.l.hashCode()});c$=L();I(self.c$);c$=A(java.util.Collections,"CheckedRandomAccessList",java.util.Collections.CheckedList,java.util.RandomAccess);c$=L();I(self.c$);c$=A(java.util.Collections,"CheckedSet",java.util.Collections.CheckedCollection,java.util.Set);j(c$,"equals",function(a){return this.c.equals(a)},"~O");
j(c$,"hashCode",function(){return this.c.hashCode()});c$=L();I(self.c$);c$=s(function(){this.valueType=this.keyType=this.m=null;p(this,arguments)},java.util.Collections,"CheckedMap",null,[java.util.Map,java.io.Serializable]);t(c$,($fz=function(a,b,d){if(null==a||null==b||null==d)throw new NullPointerException;this.m=a;this.keyType=b;this.valueType=d},$fz.isPrivate=!0,$fz),"java.util.Map,Class,Class");c(c$,"size",function(){return this.m.size()});c(c$,"isEmpty",function(){return this.m.isEmpty()});
c(c$,"containsKey",function(a){return this.m.containsKey(a)},"~O");c(c$,"containsValue",function(a){return this.m.containsValue(a)},"~O");c(c$,"get",function(a){return this.m.get(a)},"~O");c(c$,"put",function(a,b){return this.m.put(java.util.Collections.checkType(a,this.keyType),java.util.Collections.checkType(b,this.valueType))},"~O,~O");c(c$,"remove",function(a){return this.m.remove(a)},"~O");j(c$,"putAll",function(a){var b=a.size();if(0!=b){var d=Array(b);a=a.entrySet().iterator();for(var f=0;f<
b;f++){var c=a.next();java.util.Collections.checkType(c.getKey(),this.keyType);java.util.Collections.checkType(c.getValue(),this.valueType);d[f]=c}for(c=0;c<b;c++)this.m.put(d[c].getKey(),d[c].getValue())}},"java.util.Map");c(c$,"clear",function(){this.m.clear()});c(c$,"keySet",function(){return this.m.keySet()});c(c$,"values",function(){return this.m.values()});c(c$,"entrySet",function(){return new java.util.Collections.CheckedMap.CheckedEntrySet(this.m.entrySet(),this.valueType)});j(c$,"equals",
function(a){return this.m.equals(a)},"~O");j(c$,"hashcode",function(){return this.m.hashCode()});c(c$,"toString",function(){return this.m.toString()});I(self.c$);c$=s(function(){this.valueType=this.e=null;p(this,arguments)},java.util.Collections.CheckedMap,"CheckedEntry",null,java.util.Map.Entry);t(c$,function(a,b){if(null==a)throw new NullPointerException;this.e=a;this.valueType=b},"java.util.Map.Entry,Class");c(c$,"getKey",function(){return this.e.getKey()});c(c$,"getValue",function(){return this.e.getValue()});
c(c$,"setValue",function(a){return this.e.setValue(java.util.Collections.checkType(a,this.valueType))},"~O");j(c$,"equals",function(a){return this.e.equals(a)},"~O");j(c$,"hashcode",function(){return this.e.hashCode()});c$=L();I(self.c$);c$=s(function(){this.valueType=this.s=null;p(this,arguments)},java.util.Collections.CheckedMap,"CheckedEntrySet",null,java.util.Set);t(c$,function(a,b){this.s=a;this.valueType=b},"java.util.Set,Class");c(c$,"iterator",function(){return new java.util.Collections.CheckedMap.CheckedEntrySet.CheckedEntryIterator(this.s.iterator(),
this.valueType)});c(c$,"toArray",function(){for(var a=this.size(),b=Array(a),d=this.iterator(),f=0;f<a;f++)b[f]=d.next();return b});c(c$,"toArray",function(a){var b=this.size();if(a.length<b){var d=a.getClass().getComponentType();a=java.lang.reflect.Array.newInstance(d,b)}for(var d=this.iterator(),f=0;f<b;f++)a[f]=d.next();b<a.length&&(a[b]=null);return a},"~A");c(c$,"retainAll",function(a){return this.s.retainAll(a)},"java.util.Collection");c(c$,"removeAll",function(a){return this.s.removeAll(a)},
"java.util.Collection");c(c$,"containsAll",function(a){return this.s.containsAll(a)},"java.util.Collection");j(c$,"addAll",function(){throw new UnsupportedOperationException;},"java.util.Collection");c(c$,"remove",function(a){return this.s.remove(a)},"~O");c(c$,"contains",function(a){return this.s.contains(a)},"~O");j(c$,"add",function(){throw new UnsupportedOperationException;},"java.util.Map.Entry");c(c$,"isEmpty",function(){return this.s.isEmpty()});c(c$,"clear",function(){this.s.clear()});c(c$,
"size",function(){return this.s.size()});j(c$,"hashcode",function(){return this.s.hashCode()});j(c$,"equals",function(a){return this.s.equals(a)},"~O");I(self.c$);c$=s(function(){this.valueType=this.i=null;p(this,arguments)},java.util.Collections.CheckedMap.CheckedEntrySet,"CheckedEntryIterator",null,java.util.Iterator);t(c$,function(a,b){this.i=a;this.valueType=b},"java.util.Iterator,Class");c(c$,"hasNext",function(){return this.i.hasNext()});c(c$,"remove",function(){this.i.remove()});c(c$,"next",
function(){return new java.util.Collections.CheckedMap.CheckedEntry(this.i.next(),this.valueType)});c$=L();c$=L();c$=L();I(self.c$);c$=s(function(){this.ss=null;p(this,arguments)},java.util.Collections,"CheckedSortedSet",java.util.Collections.CheckedSet,java.util.SortedSet);t(c$,function(a,b){K(this,java.util.Collections.CheckedSortedSet,[a,b]);this.ss=a},"java.util.SortedSet,Class");c(c$,"comparator",function(){return this.ss.comparator()});c(c$,"subSet",function(a,b){return new java.util.Collections.CheckedSortedSet(this.ss.subSet(a,
b),this.type)},"~O,~O");c(c$,"headSet",function(a){return new java.util.Collections.CheckedSortedSet(this.ss.headSet(a),this.type)},"~O");c(c$,"tailSet",function(a){return new java.util.Collections.CheckedSortedSet(this.ss.tailSet(a),this.type)},"~O");c(c$,"first",function(){return this.ss.first()});c(c$,"last",function(){return this.ss.last()});c$=L();I(self.c$);c$=s(function(){this.sm=null;p(this,arguments)},java.util.Collections,"CheckedSortedMap",java.util.Collections.CheckedMap,java.util.SortedMap);
t(c$,function(a,b,d){K(this,java.util.Collections.CheckedSortedMap,[a,b,d]);this.sm=a},"java.util.SortedMap,Class,Class");c(c$,"comparator",function(){return this.sm.comparator()});c(c$,"subMap",function(a,b){return new java.util.Collections.CheckedSortedMap(this.sm.subMap(a,b),this.keyType,this.valueType)},"~O,~O");c(c$,"headMap",function(a){return new java.util.Collections.CheckedSortedMap(this.sm.headMap(a),this.keyType,this.valueType)},"~O");c(c$,"tailMap",function(a){return new java.util.Collections.CheckedSortedMap(this.sm.tailMap(a),
this.keyType,this.valueType)},"~O");c(c$,"firstKey",function(){return this.sm.firstKey()});c(c$,"lastKey",function(){return this.sm.lastKey()});c$=L();c$.EMPTY_LIST=c$.prototype.EMPTY_LIST=new java.util.Collections.EmptyList;c$.EMPTY_SET=c$.prototype.EMPTY_SET=new java.util.Collections.EmptySet;c$.EMPTY_MAP=c$.prototype.EMPTY_MAP=new java.util.Collections.EmptyMap}),c$=A(java.util,"Dictionary"),t(c$,function(){}),v([],"java.util.HashtableIterator",[],function(){c$=s(function(){this.expectedModCount=
this.position=0;this.lastEntry=this.type=null;this.lastPosition=0;this.canRemove=!1;p(this,arguments)},java.util,"HashtableIterator",null,java.util.Iterator);t(c$,function(a){this.type=a;this.h$=a.h$;this.position=this.h$.lastSlot;this.expectedModCount=this.h$.modCount},"java.util.AbstractSet");j(c$,"hasNext",function(){if(this.lastEntry&&this.lastEntry.next)return!0;for(;this.position>=this.h$.firstSlot;)if(null==this.h$.elementData[this.position])this.position--;else return!0;return!1});j(c$,"next",
function(){if(this.expectedModCount==this.h$.modCount){this.lastEntry&&(this.lastEntry=this.lastEntry.next);if(null==this.lastEntry){for(;this.position>=this.h$.firstSlot&&null==(this.lastEntry=this.h$.elementData[this.position]);)this.position--;this.lastEntry&&(this.lastPosition=this.position,this.position--)}if(this.lastEntry)return this.canRemove=!0,this.type.get(this.lastEntry);throw new java.util.NoSuchElementException;}throw new java.util.ConcurrentModificationException;});j(c$,"remove",function(){if(this.expectedModCount==
this.h$.modCount)if(this.canRemove){var a=this.canRemove=!1,b=this.h$.elementData[this.lastPosition];if(b===this.lastEntry)this.h$.elementData[this.lastPosition]=b.next,a=!0;else{for(;b&&b.next!==this.lastEntry;)b=b.next;b&&(b.next=this.lastEntry.next,a=!0)}if(a){this.h$.modCount++;this.h$.elementCount--;this.expectedModCount++;return}}else throw new IllegalStateException;throw new java.util.ConcurrentModificationException;})}),v([],"java.util.HashtableEnumerator",[],function(){c$=s(function(){this.key=
!1;this.start=0;this.entry=null;p(this,arguments)},java.util,"HashtableEnumerator",null,java.util.Enumeration);t(c$,function(a,b){this.key=a;if(this.h$=b)this.start=this.h$.lastSlot+1},"~B,java.util.Hashtable");j(c$,"hasMoreElements",function(){if(!this.h$)return!1;if(this.entry)return!0;for(;--this.start>=this.h$.firstSlot;)if(this.h$.elementData[this.start])return this.entry=this.h$.elementData[this.start],!0;return!1});j(c$,"nextElement",function(){if(this.hasMoreElements()){var a=this.key?this.entry.key:
this.entry.value;this.entry=this.entry.next;return a}throw new java.util.NoSuchElementException;})}),v([],"java.util.HashtableEntrySet",[],function(){c$=s(function(){p(this,arguments)},java.util,"HashtableEntrySet",null,java.util.AbstractSet);t(c$,function(a){this.h$=a},"java.util.Hashtable");j(c$,"size",function(){return this.h$.elementCount});j(c$,"clear",function(){this.h$.clear()});j(c$,"remove",function(a){return this.contains(a)?(this.h$.remove(a.getKey()),!0):!1},"~O");c(c$,"contains",function(a){var b=
this.h$.getEntry(a.getKey());return a.equals(b)},"~O");j(c$,"get",function(a){return a},"java.util.MapEntry");c(c$,"iterator",function(){return new java.util.HashtableIterator(this)})}),v([],"java.util.HashtableKeySet",[],function(){c$=s(function(){p(this,arguments)},java.util,"HashtableKeySet",null,java.util.AbstractSet);t(c$,function(a){this.h$=a},"java.util.Hashtable");j(c$,"contains",function(a){return this.h$.containsKey(a)},"~O");j(c$,"size",function(){return this.h$.elementCount});j(c$,"clear",
function(){this.h$.clear()});j(c$,"remove",function(a){return this.h$.containsKey(a)?(this.h$.remove(a),!0):!1},"~O");j(c$,"get",function(a){return a.key},"java.util.MapEntry");j(c$,"iterator",function(){return new java.util.HashtableIterator(this)})}),v([],"java.util.HashtableValueCollection",[],function(){c$=s(function(){p(this,arguments)},java.util,"HashtableValueCollection",null,java.util.AbstractCollection);t(c$,function(a){this.h$=a},"java.util.Hashtable");j(c$,"contains",function(a){return this.h$.contains(a)},
"~O");j(c$,"size",function(){return this.h$.elementCount});j(c$,"clear",function(){this.h$.clear()});j(c$,"get",function(a){return a.value},"java.util.MapEntry");j(c$,"iterator",function(){return new java.util.HashtableIterator(this)})}),v(["java.util.MapEntry"],"java.util.HashtableEntry",[],function(){c$=s(function(){this.next=null;this.hashcode=0;p(this,arguments)},java.util,"HashtableEntry",java.util.MapEntry);X(c$,function(a,b){this.key=a;this.value=b;this.hashcode=a.hashCode()});c(c$,"clone",
function(){var a=V(this,java.util.HashtableEntry,"clone",[]);null!=this.next&&(a.next=this.next.clone());return a});j(c$,"setValue",function(a){if(null==a)throw new NullPointerException;var b=this.value;this.value=a;return b},"~O");c(c$,"getKeyHash",function(){return this.key.hashCode()});c(c$,"equalsKey",function(a){return this.hashcode==(!a.hashCode||a.hashCode())&&this.key.equals(a)},"~O,~N");j(c$,"toString",function(){return this.key+"="+this.value})}),v("java.util.Dictionary $.Enumeration $.HashtableEnumerator $.Iterator $.Map $.MapEntry $.NoSuchElementException".split(" "),
"java.util.Hashtable","java.lang.IllegalArgumentException $.IllegalStateException $.NullPointerException $.StringBuilder java.util.AbstractCollection $.AbstractSet $.Arrays $.Collections $.ConcurrentModificationException java.util.MapEntry.Type java.util.HashtableEntry".split(" "),function(){c$=s(function(){this.elementCount=0;this.elementData=null;this.firstSlot=this.threshold=this.loadFactor=0;this.lastSlot=-1;this.modCount=0;p(this,arguments)},java.util,"Hashtable",java.util.Dictionary,[java.util.Map,
Cloneable,java.io.Serializable]);c$.newEntry=c(c$,"newEntry",($fz=function(a,b){return new java.util.HashtableEntry(a,b)},$fz.isPrivate=!0,$fz),"~O,~O,~N");X(c$,function(){this.elementCount=0;this.elementData=this.newElementArray(11);this.firstSlot=this.elementData.length;this.loadFactor=0.75;this.computeMaxSize()});c(c$,"newElementArray",($fz=function(a){return Array(a)},$fz.isPrivate=!0,$fz),"~N");j(c$,"clear",function(){this.elementCount=0;for(var a=this.elementData.length;0<=--a;)this.elementData[a]=
null;this.modCount++});c(c$,"clone",function(){try{var a=V(this,java.util.Hashtable,"clone",[]);a.elementData=this.elementData.clone();for(var b,d=this.elementData.length;0<=--d;)if(b=this.elementData[d])a.elementData[d]=b.clone();return a}catch(f){if(q(f,CloneNotSupportedException))return null;throw f;}});c(c$,"computeMaxSize",($fz=function(){this.threshold=Math.round(this.elementData.length*this.loadFactor)},$fz.isPrivate=!0,$fz));c(c$,"contains",function(a){if(null==a)throw new NullPointerException;
for(var b=this.elementData.length;0<=--b;)for(var d=this.elementData[b];d;){if(a.equals(d.value))return!0;d=d.next}return!1},"~O");j(c$,"containsKey",function(a){a.hashCode||(a.hashCode=function(){return 1},a.equals||(a.equals=function(a){return this==a}));return null!=this.getEntry(a)},"~O");j(c$,"containsValue",function(a){return this.contains(a)},"~O");j(c$,"elements",function(){return 0==this.elementCount?java.util.Hashtable.EMPTY_ENUMERATION:new java.util.HashtableEnumerator(!1,this)});j(c$,
"entrySet",function(){return new java.util.HashtableEntrySet(this)});j(c$,"equals",function(a){if(this===a)return!0;if(q(a,java.util.Map)){if(this.size()!=a.size())return!1;var b=this.entrySet(),d;for(a=a.entrySet().iterator();a.hasNext()&&((d=a.next())||1);)if(!b.contains(d))return!1;return!0}return!1},"~O");j(c$,"get",function(a){a.hashCode||(a.hashCode=function(){return 1},a.equals||(a.equals=function(a){return this==a}));for(var b=a.hashCode(),d=this.elementData[(b&2147483647)%this.elementData.length];d;){if(d.equalsKey(a,
b))return d.value;d=d.next}return null},"~O");c(c$,"getEntry",function(a){for(var b=a.hashCode(),d=this.elementData[(b&2147483647)%this.elementData.length];d;){if(d.equalsKey(a,b))return d;d=d.next}return null},"~O");j(c$,"hashCode",function(){for(var a=0,b=this.entrySet().iterator();b.hasNext();)var d=b.next(),f=d.getKey(),d=d.getValue(),f=(f!==this?f.hashCode():0)^(d!==this?null!=d?d.hashCode():0:0),a=a+f;return a});j(c$,"isEmpty",function(){return 0==this.elementCount});j(c$,"keys",function(){return 0==
this.elementCount?java.util.Hashtable.EMPTY_ENUMERATION:new java.util.HashtableEnumerator(!0,this)});j(c$,"keySet",function(){return new java.util.HashtableKeySet(this)});j(c$,"put",function(a,b){if(null!=a&&null!=b){a.hashCode||(a.hashCode=function(){return 1},a.equals||(a.equals=function(a){return this==a}));for(var d=a.hashCode(),f=(d&2147483647)%this.elementData.length,c=this.elementData[f];null!=c&&!c.equalsKey(a,d);)c=c.next;if(null==c)return this.modCount++,++this.elementCount>this.threshold&&
(this.rehash(),f=(d&2147483647)%this.elementData.length),f<this.firstSlot&&(this.firstSlot=f),f>this.lastSlot&&(this.lastSlot=f),c=java.util.Hashtable.newEntry(a,b,d),c.next=this.elementData[f],this.elementData[f]=c,null;d=c.value;c.value=b;return d}throw new NullPointerException;},"~O,~O");j(c$,"putAll",function(a){var b;for(a=a.entrySet().iterator();a.hasNext()&&((b=a.next())||1);)this.put(b.getKey(),b.getValue())},"java.util.Map");c(c$,"rehash",function(){var a=(this.elementData.length<<1)+1;0==
a&&(a=1);for(var b=a,d=-1,f=this.newElementArray(a),c=this.lastSlot+1;--c>=this.firstSlot;)for(var e=this.elementData[c];null!=e;){var h=(e.getKeyHash()&2147483647)%a;h<b&&(b=h);h>d&&(d=h);var l=e.next;e.next=f[h];f[h]=e;e=l}this.firstSlot=b;this.lastSlot=d;this.elementData=f;this.computeMaxSize()});j(c$,"remove",function(a){for(var b=a.hashCode(),d=(b&2147483647)%this.elementData.length,f=null,c=this.elementData[d];null!=c&&!c.equalsKey(a,b);)f=c,c=c.next;return null!=c?(this.modCount++,null==f?
this.elementData[d]=c.next:f.next=c.next,this.elementCount--,a=c.value,c.value=null,a):null},"~O");j(c$,"size",function(){return this.elementCount});j(c$,"toString",function(){if(this.isEmpty())return"{}";var a=new StringBuilder(28*this.size());a.append("{");for(var b=this.lastSlot;b>=this.firstSlot;b--)for(var d=this.elementData[b];null!=d;)d.key!==this?a.append(d.key):a.append("(this Map)"),a.append("="),d.value!==this?a.append(d.value):a.append("(this Map)"),a.append(", "),d=d.next;0<this.elementCount&&
a.setLength(a.length()-2);a.append("}");return a.toString()});j(c$,"values",function(){return new java.util.HashtableValueCollection(this)});java.util.Hashtable.EMPTY_ENUMERATION=new java.util.HashtableEnumerator}),v(["java.util.Map"],"java.util.MapEntry",null,function(){c$=s(function(){this.value=this.key=null;p(this,arguments)},java.util,"MapEntry",null,[java.util.Map.Entry,Cloneable]);t(c$,function(a){this.key=a},"~O");t(c$,function(a,b){this.key=a;this.value=b},"~O,~O");c(c$,"clone",function(){try{return V(this,
java.util.MapEntry,"clone",[])}catch(a){if(q(a,CloneNotSupportedException))return null;throw a;}});j(c$,"equals",function(a){return this===a?!0:q(a,java.util.Map.Entry)?(null==this.key?null==a.getKey():this.key.equals(a.getKey()))&&(null==this.value?null==a.getValue():this.value.equals(a.getValue())):!1},"~O");j(c$,"getKey",function(){return this.key});j(c$,"getValue",function(){return this.value});j(c$,"hashCode",function(){return(null==this.key?0:this.key.hashCode())^(null==this.value?0:this.value.hashCode())});
j(c$,"setValue",function(a){var b=this.value;this.value=a;return b},"~O");j(c$,"toString",function(){return this.key+"="+this.value});H(java.util.MapEntry,"Type")}),v(["java.util.Hashtable"],"java.util.Properties",["java.lang.NullPointerException","$.StringBuffer"],function(){c$=s(function(){this.defaults=this.builder=null;p(this,arguments)},java.util,"Properties",java.util.Hashtable);t(c$,function(a){K(this,java.util.Properties,[]);this.defaults=a},"java.util.Properties");c(c$,"dumpString",($fz=
function(a,b,d){var f=0;!d&&(f<b.length&&32==b.charAt(f).charCodeAt(0))&&(a.append("\\ "),f++);for(;f<b.length;f++){var c=b.charAt(f);switch(c){case "\t":a.append("\\t");break;case "\n":a.append("\\n");break;case "\f":a.append("\\f");break;case "\r":a.append("\\r");break;default:(0<="\\#!=:".indexOf(c)||d&&32==c.charCodeAt(0))&&a.append("\\");if(!(32<=c.charCodeAt(0)&&126>=c.charCodeAt(0))){c=Integer.toHexString(c.charCodeAt(0));a.append("\\u");for(var e=0;e<4-c.length;e++)a.append("0")}a.append(c)}}},
$fz.isPrivate=!0,$fz),"StringBuilder,~S,~B");c(c$,"getProperty",function(a){var b=this.get(a),b=q(b,String)?b:null;null==b&&null!=this.defaults&&(b=this.defaults.getProperty(a));return b},"~S");c(c$,"getProperty",function(a,b){var d=this.get(a),d=q(d,String)?d:null;null==d&&null!=this.defaults&&(d=this.defaults.getProperty(a));return null==d?b:d},"~S,~S");c(c$,"list",function(a){if(null==a)throw new NullPointerException;for(var b=new StringBuffer(80),d=this.propertyNames();d.hasMoreElements();){var f=
d.nextElement();b.append(f);b.append("=");for(var c=this.get(f),e=this.defaults;null==c;)c=e.get(f),e=e.defaults;40<c.length?(b.append(c.substring(0,37)),b.append("...")):b.append(c);a.println(b.toString());b.setLength(0)}},"java.io.PrintStream");c(c$,"list",function(a){if(null==a)throw new NullPointerException;for(var b=new StringBuffer(80),d=this.propertyNames();d.hasMoreElements();){var f=d.nextElement();b.append(f);b.append("=");for(var c=this.get(f),e=this.defaults;null==c;)c=e.get(f),e=e.defaults;
40<c.length?(b.append(c.substring(0,37)),b.append("...")):b.append(c);a.println(b.toString());b.setLength(0)}},"java.io.PrintWriter");c(c$,"load",function(){},"java.io.InputStream");c(c$,"propertyNames",function(){if(null==this.defaults)return this.keys();for(var a=new java.util.Hashtable(this.defaults.size()+this.size()),b=this.defaults.propertyNames();b.hasMoreElements();)a.put(b.nextElement(),a);for(b=this.keys();b.hasMoreElements();)a.put(b.nextElement(),a);return a.keys()});c(c$,"save",function(a,
b){try{this.store(a,b)}catch(d){if(!q(d,java.io.IOException))throw d;}},"java.io.OutputStream,~S");c(c$,"setProperty",function(a,b){return this.put(a,b)},"~S,~S");c(c$,"store",function(){},"java.io.OutputStream,~S");c(c$,"loadFromXML",function(){},"java.io.InputStream");c(c$,"storeToXML",function(){},"java.io.OutputStream,~S");c(c$,"storeToXML",function(){},"java.io.OutputStream,~S,~S");c(c$,"substitutePredefinedEntries",($fz=function(a){return a.replaceAll("&","&amp;").replaceAll("<","&lt;").replaceAll(">",
"&gt;").replaceAll("'","&apos;").replaceAll('"',"&quot;")},$fz.isPrivate=!0,$fz),"~S");C(c$,"PROP_DTD_NAME","http://java.sun.com/dtd/properties.dtd","PROP_DTD",'<?xml version="1.0" encoding="UTF-8"?>    <!ELEMENT properties (comment?, entry*) >    <!ATTLIST properties version CDATA #FIXED "1.0" >    <!ELEMENT comment (#PCDATA) >    <!ELEMENT entry (#PCDATA) >    <!ATTLIST entry key CDATA #REQUIRED >',"NONE",0,"SLASH",1,"UNICODE",2,"CONTINUE",3,"KEY_DONE",4,"IGNORE",5,"lineSeparator",null)}),v(null,
"java.util.Random",["java.lang.IllegalArgumentException"],function(){c$=s(function(){this.haveNextNextGaussian=!1;this.nextNextGaussian=this.seed=0;p(this,arguments)},java.util,"Random",null,java.io.Serializable);t(c$,function(){this.setSeed(System.currentTimeMillis())});t(c$,function(a){this.setSeed(a)},"~N");c(c$,"next",function(a){this.seed=25214903917*this.seed+11&0xffffffffffff;return this.seed>>>48-a},"~N");c(c$,"nextBoolean",function(){return 0.5<Math.random()});c(c$,"nextBytes",function(){for(var a=
0;a<bytes.length;a++)bytes[a]=Math.round(256*Math.random())},"~A");c(c$,"nextDouble",function(){return Math.random()});c(c$,"nextFloat",function(){return Math.random()});c(c$,"nextGaussian",function(){if(this.haveNextNextGaussian)return this.haveNextNextGaussian=!1,this.nextNextGaussian;var a,b,d;do a=2*this.nextDouble()-1,b=2*this.nextDouble()-1,d=a*a+b*b;while(1<=d);d=Math.sqrt(-2*Math.log(d)/d);this.nextNextGaussian=b*d;this.haveNextNextGaussian=!0;return a*d});c(c$,"nextInt",function(){return Math.ceil(65535*
Math.random())-32768});c(c$,"nextInt",function(a){if(0<a){if((a&-a)==a)return a*this.next(31)>>31;var b,d;do b=this.next(31),d=b%a;while(0>b-d+(a-1));return d}throw new IllegalArgumentException;},"~N");c(c$,"nextLong",function(){return Math.ceil(4294967295*Math.random())-2147483648});c(c$,"setSeed",function(a){this.seed=(a^25214903917)&0xffffffffffff;this.haveNextNextGaussian=!1},"~N");C(c$,"multiplier",25214903917)}),v(["java.util.Map"],"java.util.SortedMap",null,function(){H(java.util,"SortedMap",
java.util.Map)}),v(["java.util.Set"],"java.util.SortedSet",null,function(){H(java.util,"SortedSet",java.util.Set)}),v(["java.util.Enumeration"],"java.util.StringTokenizer",["java.lang.NullPointerException","java.util.NoSuchElementException"],function(){c$=s(function(){this.delimiters=this.string=null;this.returnDelimiters=!1;this.position=0;p(this,arguments)},java.util,"StringTokenizer",null,java.util.Enumeration);t(c$,function(a){this.construct(a," \t\n\r\f",!1)},"~S");t(c$,function(a,b){this.construct(a,
b,!1)},"~S,~S");t(c$,function(a,b,d){if(null!=a)this.string=a,this.delimiters=b,this.returnDelimiters=d,this.position=0;else throw new NullPointerException;},"~S,~S,~B");c(c$,"countTokens",function(){for(var a=0,b=!1,d=this.position,f=this.string.length;d<f;d++)0<=this.delimiters.indexOf(this.string.charAt(d),0)?(this.returnDelimiters&&a++,b&&(a++,b=!1)):b=!0;b&&a++;return a});j(c$,"hasMoreElements",function(){return this.hasMoreTokens()});c(c$,"hasMoreTokens",function(){var a=this.string.length;
if(this.position<a){if(this.returnDelimiters)return!0;for(var b=this.position;b<a;b++)if(-1==this.delimiters.indexOf(this.string.charAt(b),0))return!0}return!1});j(c$,"nextElement",function(){return this.nextToken()});c(c$,"nextToken",function(){var a=this.position,b=this.string.length;if(a<b){if(this.returnDelimiters){if(0<=this.delimiters.indexOf(this.string.charAt(this.position),0))return String.valueOf(this.string.charAt(this.position++));for(this.position++;this.position<b;this.position++)if(0<=
this.delimiters.indexOf(this.string.charAt(this.position),0))return this.string.substring(a,this.position);return this.string.substring(a)}for(;a<b&&0<=this.delimiters.indexOf(this.string.charAt(a),0);)a++;this.position=a;if(a<b){for(this.position++;this.position<b;this.position++)if(0<=this.delimiters.indexOf(this.string.charAt(this.position),0))return this.string.substring(a,this.position);return this.string.substring(a)}}throw new java.util.NoSuchElementException;});c(c$,"nextToken",function(a){this.delimiters=
a;return this.nextToken()},"~S")}),u("javajs.api"),H(javajs.api,"BytePoster"),u("javajs.api"),H(javajs.api,"EventManager"),u("javajs.api"),H(javajs.api,"FontManager"),u("javajs.api"),H(javajs.api,"GenericColor"),u("javajs.api"),H(javajs.api,"GenericFileInterface"),u("javajs.api"),H(javajs.api,"GenericMenuInterface"),u("javajs.api"),H(javajs.api,"GenericMouseInterface"),u("javajs.api"),v(["javajs.api.FontManager"],"javajs.api.GenericPlatform",null,function(){c$=H(javajs.api,"GenericPlatform",javajs.api.FontManager);
C(c$,"CURSOR_DEFAULT",0,"CURSOR_CROSSHAIR",1,"CURSOR_WAIT",3,"CURSOR_ZOOM",8,"CURSOR_HAND",12,"CURSOR_MOVE",13)}),u("javajs.api"),H(javajs.api,"JSInterface"),u("javajs.api"),H(javajs.api,"JSONEncodable"),u("javajs.api"),H(javajs.api,"PlatformViewer"),u("javajs.api"),H(javajs.api,"ZInputStream"),u("javajs.awt"),v(["javajs.api.GenericColor"],"javajs.awt.Color",null,function(){c$=s(function(){this.argb=0;p(this,arguments)},javajs.awt,"Color",null,javajs.api.GenericColor);j(c$,"getRGB",function(){return this.argb&
16777215});j(c$,"getOpacity255",function(){return this.argb>>24&255});j(c$,"setOpacity255",function(a){this.argb=this.argb&16777215|(a&255)<<24},"~N");c$.get1=c(c$,"get1",function(a){var b=new javajs.awt.Color;b.argb=a|4278190080;return b},"~N");c$.get3=c(c$,"get3",function(a,b,d){return(new javajs.awt.Color).set4(a,b,d,255)},"~N,~N,~N");c$.get4=c(c$,"get4",function(a,b,d,f){return(new javajs.awt.Color).set4(a,b,d,f)},"~N,~N,~N,~N");c(c$,"set4",function(a,b,d,f){this.argb=(f<<24|a<<16|b<<8|d)&4294967295;
return this},"~N,~N,~N,~N");j(c$,"toString",function(){var a="00000000"+Integer.toHexString(this.argb);return"[0x"+a.substring(a.length-8,a.length)+"]"})}),u("javajs.awt"),c$=s(function(){this.height=this.width=0;p(this,arguments)},javajs.awt,"Dimension"),t(c$,function(a,b){this.set(a,b)},"~N,~N"),c(c$,"set",function(a,b){this.width=a;this.height=b;return this},"~N,~N"),u("javajs.awt.event"),c$=s(function(){this.source=null;p(this,arguments)},javajs.awt.event,"Event"),c(c$,"getSource",function(){return this.source}),
C(c$,"MOUSE_LEFT",16,"MOUSE_MIDDLE",8,"MOUSE_RIGHT",4,"MOUSE_WHEEL",32,"MAC_COMMAND",20,"BUTTON_MASK",28,"MOUSE_DOWN",501,"MOUSE_UP",502,"MOUSE_MOVE",503,"MOUSE_ENTER",504,"MOUSE_EXIT",505,"MOUSE_DRAG",506,"SHIFT_MASK",1,"ALT_MASK",8,"CTRL_MASK",2,"CTRL_ALT",10,"CTRL_SHIFT",3,"META_MASK",4,"VK_SHIFT",16,"VK_ALT",18,"VK_CONTROL",17,"VK_META",157,"VK_LEFT",37,"VK_RIGHT",39,"VK_PERIOD",46,"VK_SPACE",32,"VK_DOWN",40,"VK_UP",38,"VK_ESCAPE",27,"VK_DELETE",127,"VK_BACK_SPACE",8,"VK_PAGE_DOWN",34,"VK_PAGE_UP",
33,"MOVED",0,"DRAGGED",1,"CLICKED",2,"WHEELED",3,"PRESSED",4,"RELEASED",5),u("javajs.awt"),v(null,"javajs.awt.Font",["JU.AU"],function(){c$=s(function(){this.fid=0;this.fontStyle=this.fontFace=null;this.fontSize=this.idFontStyle=this.idFontFace=this.fontSizeNominal=0;this.manager=this.fontMetrics=this.font=null;this.descent=this.ascent=0;this.isItalic=this.isBold=!1;p(this,arguments)},javajs.awt,"Font");t(c$,function(a,b,d,f,c,e,h){this.manager=a;this.fid=b;this.fontFace=javajs.awt.Font.fontFaces[d];
this.fontStyle=javajs.awt.Font.fontStyles[f];this.idFontFace=d;this.idFontStyle=f;this.fontSize=c;this.isBold=1==(f&1);this.isItalic=2==(f&2);this.fontSizeNominal=e;this.font=a.newFont(javajs.awt.Font.fontFaces[d],this.isBold,this.isItalic,c);this.fontMetrics=a.getFontMetrics(this,h);this.descent=a.getFontDescent(this.fontMetrics);this.ascent=a.getFontAscent(this.fontMetrics)},"javajs.api.FontManager,~N,~N,~N,~N,~N,~O");c$.getFont3D=c(c$,"getFont3D",function(a){return javajs.awt.Font.font3ds[a&255]},
"~N");c$.createFont3D=c(c$,"createFont3D",function(a,b,d,f,c,e){255<d&&(d=255);for(var h=z(d)<<4,h=a&3|(b&3)<<2|h<<4,l=javajs.awt.Font.fontkeyCount;0<--l;)if(h==javajs.awt.Font.fontkeys[l]&&javajs.awt.Font.font3ds[l].fontSizeNominal==f)return javajs.awt.Font.font3ds[l];l=javajs.awt.Font.fontkeyCount++;l==javajs.awt.Font.fontkeys.length&&(javajs.awt.Font.fontkeys=JU.AU.arrayCopyI(javajs.awt.Font.fontkeys,l+8));javajs.awt.Font.font3ds=JU.AU.arrayCopyObject(javajs.awt.Font.font3ds,l+8);a=new javajs.awt.Font(c,
l,a,b,d,f,e);javajs.awt.Font.font3ds[l]=a;javajs.awt.Font.fontkeys[l]=h;return a},"~N,~N,~N,~N,javajs.api.FontManager,~O");c$.getFontFaceID=c(c$,"getFontFaceID",function(a){return"Monospaced".equalsIgnoreCase(a)?2:"Serif".equalsIgnoreCase(a)?1:0},"~S");c$.getFontStyleID=c(c$,"getFontStyleID",function(a){for(var b=4;0<=--b;)if(javajs.awt.Font.fontStyles[b].equalsIgnoreCase(a))return b;return-1},"~S");c(c$,"getAscent",function(){return this.ascent});c(c$,"getDescent",function(){return this.descent});
c(c$,"getHeight",function(){return this.getAscent()+this.getDescent()});c(c$,"getFontMetrics",function(){return this.fontMetrics});c(c$,"stringWidth",function(a){return this.manager.fontStringWidth(this,a)},"~S");c(c$,"getInfo",function(){return this.fontSizeNominal+" "+this.fontFace+" "+this.fontStyle});C(c$,"FONT_ALLOCATION_UNIT",8,"fontkeyCount",1,"fontkeys",E(8,0));c$.font3ds=c$.prototype.font3ds=Array(8);C(c$,"FONT_FACE_SANS",0,"FONT_FACE_SERIF",1,"FONT_FACE_MONO",2,"fontFaces",["SansSerif",
"Serif","Monospaced",""],"FONT_STYLE_PLAIN",0,"FONT_STYLE_BOLD",1,"FONT_STYLE_ITALIC",2,"FONT_STYLE_BOLDITALIC",3,"fontStyles",["Plain","Bold","Italic","BoldItalic"])}),u("JU"),v(["javajs.api.JSONEncodable"],"JU.A4",["JU.T3"],function(){c$=s(function(){this.angle=this.z=this.y=this.x=0;p(this,arguments)},JU,"A4",null,[javajs.api.JSONEncodable,java.io.Serializable]);t(c$,function(){this.z=1});c$.new4=c(c$,"new4",function(a,b,d,f){var c=new JU.A4;c.set4(a,b,d,f);return c},"~N,~N,~N,~N");c$.newAA=c(c$,
"newAA",function(a){var b=new JU.A4;b.set4(a.x,a.y,a.z,a.angle);return b},"JU.A4");c$.newVA=c(c$,"newVA",function(a,b){var d=new JU.A4;d.setVA(a,b);return d},"JU.V3,~N");c(c$,"setVA",function(a,b){this.x=a.x;this.y=a.y;this.z=a.z;this.angle=b},"JU.V3,~N");c(c$,"set4",function(a,b,d,f){this.x=a;this.y=b;this.z=d;this.angle=f},"~N,~N,~N,~N");c(c$,"setAA",function(a){this.x=a.x;this.y=a.y;this.z=a.z;this.angle=a.angle},"JU.A4");c(c$,"setM",function(a){this.setFromMat(a.m00,a.m01,a.m02,a.m10,a.m11,a.m12,
a.m20,a.m21,a.m22)},"JU.M3");c(c$,"setFromMat",function(a,b,d,f,c,e,h,l,k){a=0.5*(a+c+k-1);this.x=l-e;this.y=d-h;this.z=f-b;b=0.5*Math.sqrt(this.x*this.x+this.y*this.y+this.z*this.z);this.angle=Math.atan2(b,a)},"~N,~N,~N,~N,~N,~N,~N,~N,~N");j(c$,"hashCode",function(){return JU.T3.floatToIntBits0(this.x)^JU.T3.floatToIntBits0(this.y)^JU.T3.floatToIntBits0(this.z)^JU.T3.floatToIntBits0(this.angle)});j(c$,"equals",function(a){return!q(a,JU.A4)?!1:this.x==a.x&&this.y==a.y&&this.z==a.z&&this.angle==a.angle},
"~O");j(c$,"toString",function(){return"("+this.x+", "+this.y+", "+this.z+", "+this.angle+")"});j(c$,"toJSON",function(){return"["+this.x+","+this.y+","+this.z+","+180*this.angle/3.141592653589793+"]"})}),u("JU"),v(["java.net.URLConnection"],"JU.AjaxURLConnection",null,function(){c$=s(function(){this.bytesOut=null;this.postOut="";p(this,arguments)},JU,"AjaxURLConnection",java.net.URLConnection);c(c$,"doAjax",function(){return Jmol._doAjax(this.url,this.postOut,this.bytesOut)});j(c$,"connect",function(){});
c(c$,"outputBytes",function(a){this.bytesOut=a},"~A");c(c$,"outputString",function(a){this.postOut=a},"~S");c(c$,"getContents",function(){return this.doAjax()})}),u("JU"),v(["java.net.URLStreamHandler"],"JU.AjaxURLStreamHandler",["JU.AjaxURLConnection","$.SB"],function(){c$=s(function(){this.protocol=null;p(this,arguments)},JU,"AjaxURLStreamHandler",java.net.URLStreamHandler);t(c$,function(a){K(this,JU.AjaxURLStreamHandler,[]);this.protocol=a},"~S");j(c$,"openConnection",function(a){return new JU.AjaxURLConnection(a)},
"java.net.URL");j(c$,"toExternalForm",function(a){var b=new JU.SB;b.append(a.getProtocol());b.append(":");null!=a.getAuthority()&&0<a.getAuthority().length&&(b.append("//"),b.append(a.getAuthority()));null!=a.getPath()&&b.append(a.getPath());null!=a.getQuery()&&(b.append("?"),b.append(a.getQuery()));null!=a.getRef()&&(b.append("#"),b.append(a.getRef()));return b.toString()},"java.net.URL")}),u("JU"),v(["java.net.URLStreamHandlerFactory","java.util.Hashtable"],"JU.AjaxURLStreamHandlerFactory",["JU.AjaxURLStreamHandler"],
function(){c$=s(function(){this.htFactories=null;p(this,arguments)},JU,"AjaxURLStreamHandlerFactory",null,java.net.URLStreamHandlerFactory);N(c$,function(){this.htFactories=new java.util.Hashtable});j(c$,"createURLStreamHandler",function(a){var b=this.htFactories.get(a);null==b&&this.htFactories.put(a,b=new JU.AjaxURLStreamHandler(a));return null==b.protocol?null:b},"~S")}),u("JU"),v(null,"JU.AU",["java.util.Arrays","JU.Lst"],function(){c$=A(JU,"AU");c$.ensureLength=c(c$,"ensureLength",function(a,
b){return null!=a&&JU.AU.getLength(a)>=b?a:JU.AU.arrayCopyObject(a,b)},"~O,~N");c$.ensureLengthS=c(c$,"ensureLengthS",function(a,b){return null!=a&&a.length>=b?a:JU.AU.arrayCopyS(a,b)},"~A,~N");c$.ensureLengthA=c(c$,"ensureLengthA",function(a,b){return null!=a&&a.length>=b?a:JU.AU.arrayCopyF(a,b)},"~A,~N");c$.ensureLengthI=c(c$,"ensureLengthI",function(a,b){return null!=a&&a.length>=b?a:JU.AU.arrayCopyI(a,b)},"~A,~N");c$.ensureLengthShort=c(c$,"ensureLengthShort",function(a,b){return null!=a&&a.length>=
b?a:JU.AU.arrayCopyShort(a,b)},"~A,~N");c$.ensureLengthByte=c(c$,"ensureLengthByte",function(a,b){return null!=a&&a.length>=b?a:JU.AU.arrayCopyByte(a,b)},"~A,~N");c$.doubleLength=c(c$,"doubleLength",function(a){return JU.AU.arrayCopyObject(a,null==a?16:2*JU.AU.getLength(a))},"~O");c$.doubleLengthS=c(c$,"doubleLengthS",function(a){return JU.AU.arrayCopyS(a,null==a?16:2*a.length)},"~A");c$.doubleLengthF=c(c$,"doubleLengthF",function(a){return JU.AU.arrayCopyF(a,null==a?16:2*a.length)},"~A");c$.doubleLengthI=
c(c$,"doubleLengthI",function(a){return JU.AU.arrayCopyI(a,null==a?16:2*a.length)},"~A");c$.doubleLengthShort=c(c$,"doubleLengthShort",function(a){return JU.AU.arrayCopyShort(a,null==a?16:2*a.length)},"~A");c$.doubleLengthByte=c(c$,"doubleLengthByte",function(a){return JU.AU.arrayCopyByte(a,null==a?16:2*a.length)},"~A");c$.doubleLengthBool=c(c$,"doubleLengthBool",function(a){return JU.AU.arrayCopyBool(a,null==a?16:2*a.length)},"~A");c$.deleteElements=c(c$,"deleteElements",function(a,b,d){if(0==d||
null==a)return a;var f=JU.AU.getLength(a);if(b>=f)return a;f-=b+d;0>f&&(f=0);var c=JU.AU.newInstanceO(a,b+f);0<b&&System.arraycopy(a,0,c,0,b);0<f&&System.arraycopy(a,b+d,c,b,f);return c},"~O,~N,~N");c$.arrayCopyObject=c(c$,"arrayCopyObject",function(a,b){if(null==a)return null;var d=JU.AU.getLength(a);if(b==d)return a;var f=JU.AU.newInstanceO(a,b);System.arraycopy(a,0,f,0,d<b?d:b);return f},"~O,~N");c$.newInstanceO=c(c$,"newInstanceO",function(a,b){return Array(b)},"~O,~N");c$.getLength=c(c$,"getLength",
function(a){return a.length},"~O");c$.arrayCopyS=c(c$,"arrayCopyS",function(a,b){0>b&&(b=a.length);var d=Array(b);if(null!=a){var f=a.length;System.arraycopy(a,0,d,0,f<b?f:b)}return d},"~A,~N");c$.arrayCopyII=c(c$,"arrayCopyII",function(a,b){var d=JU.AU.newInt2(b);if(null!=a){var f=a.length;System.arraycopy(a,0,d,0,f<b?f:b)}return d},"~A,~N");c$.arrayCopyPt=c(c$,"arrayCopyPt",function(a,b){0>b&&(b=a.length);var d=Array(b);if(null!=a){var f=a.length;System.arraycopy(a,0,d,0,f<b?f:b)}return d},"~A,~N");
c$.arrayCopyF=c(c$,"arrayCopyF",function(a,b){0>b&&(b=a.length);var d=M(b,0);if(null!=a){var f=a.length;System.arraycopy(a,0,d,0,f<b?f:b)}return d},"~A,~N");c$.arrayCopyI=c(c$,"arrayCopyI",function(a,b){0>b&&(b=a.length);var d=E(b,0);if(null!=a){var f=a.length;System.arraycopy(a,0,d,0,f<b?f:b)}return d},"~A,~N");c$.arrayCopyRangeI=c(c$,"arrayCopyRangeI",function(a,b,d){if(null==a)return null;var f=a.length;-1==d&&(d=f);-2==d&&(d=x(f/2));d-=b;f=E(d,0);System.arraycopy(a,b,f,0,d);return f},"~A,~N,~N");
c$.arrayCopyRangeRevI=c(c$,"arrayCopyRangeRevI",function(a,b,d){if(null==a)return null;b=JU.AU.arrayCopyRangeI(a,b,d);0>d&&(d=a.length);for(a=x(d/2);0<=--a;)JU.AU.swapInt(b,a,d-1-a);return b},"~A,~N,~N");c$.arrayCopyShort=c(c$,"arrayCopyShort",function(a,b){0>b&&(b=a.length);var d=W(b,0);if(null!=a){var f=a.length;System.arraycopy(a,0,d,0,f<b?f:b)}return d},"~A,~N");c$.arrayCopyByte=c(c$,"arrayCopyByte",function(a,b){0>b&&(b=a.length);var d=Q(b,0);if(null!=a){var f=a.length;System.arraycopy(a,0,d,
0,f<b?f:b)}return d},"~A,~N");c$.arrayCopyBool=c(c$,"arrayCopyBool",function(a,b){0>b&&(b=a.length);var d=ea(b,!1);if(null!=a){var f=a.length;System.arraycopy(a,0,d,0,f<b?f:b)}return d},"~A,~N");c$.swapInt=c(c$,"swapInt",function(a,b,d){var f=a[b];a[b]=a[d];a[d]=f},"~A,~N,~N");c$.dumpArray=c(c$,"dumpArray",function(a,b,d,f,c,e){a="dumpArray: "+a+"\n";for(var h=d;h<=f;h++)a+="\t*"+h+"*";for(;e>=c;e--){a+="\n*"+e+"*";for(h=d;h<=f;h++)a+="\t"+(h<b.length&&e<b[h].length?b[h][e]:NaN)}return a},"~S,~A,~N,~N,~N,~N");
c$.dumpIntArray=c(c$,"dumpIntArray",function(a,b){for(var d="",f=0;f<b;f++)d+=" "+a[f];return d},"~A,~N");c$.sortedItem=c(c$,"sortedItem",function(a,b){if(0==a.size())return null;if(1==a.size())return a.get(0);var d=a.toArray(Array(a.size()));java.util.Arrays.sort(d);return d[b%d.length]},"JU.Lst,~N");c$.createArrayOfArrayList=c(c$,"createArrayOfArrayList",function(a){return Array(a)},"~N");c$.createArrayOfHashtable=c(c$,"createArrayOfHashtable",function(a){return Array(a)},"~N");c$.swap=c(c$,"swap",
function(a,b,d){var f=a[b];a[b]=a[d];a[d]=f},"~A,~N,~N");c$.newFloat2=c(c$,"newFloat2",function(a){return P(a,null)},"~N");c$.newInt2=c(c$,"newInt2",function(a){return P(a,null)},"~N");c$.newInt3=c(c$,"newInt3",function(a){return P(a,null)},"~N,~N");c$.newFloat3=c(c$,"newFloat3",function(a){return P(a,null)},"~N,~N");c$.newInt4=c(c$,"newInt4",function(a){return P(a,null)},"~N");c$.newShort2=c(c$,"newShort2",function(a){return P(a,null)},"~N");c$.newByte2=c(c$,"newByte2",function(a){return P(a,null)},
"~N");c$.newDouble2=c(c$,"newDouble2",function(a){return P(a,null)},"~N");c$.removeMapKeys=c(c$,"removeMapKeys",function(a,b){for(var d=new JU.Lst,f,c=a.keySet().iterator();c.hasNext()&&((f=c.next())||1);)f.startsWith(b)&&d.addLast(f);for(f=d.size();0<=--f;)a.remove(d.get(f));return d.size()},"java.util.Map,~S")}),u("JU"),v(null,"JU.Base64",["JU.SB"],function(){c$=A(JU,"Base64");c$.getBytes64=c(c$,"getBytes64",function(a){return JU.Base64.getBase64(a).toBytes(0,-1)},"~A");c$.getBase64=c(c$,"getBase64",
function(a){var b=a.length,d=new JU.SB;if(0==b)return d;for(var f=0,c=0;f<b&&0==c;){0==f%75&&0!=f&&d.append("\r\n");var c=f+2==b?1:f+1==b?2:0,e=a[f++]<<16&16711680|(2==c?0:a[f++]<<8)&65280|(1<=c?0:a[f++])&255;d.appendC(JU.Base64.base64.charAt(e>>18&63));d.appendC(JU.Base64.base64.charAt(e>>12&63));d.appendC(2==c?"=":JU.Base64.base64.charAt(e>>6&63));d.appendC(1<=c?"=":JU.Base64.base64.charAt(e&63))}return d},"~A");c$.decodeBase64=c(c$,"decodeBase64",function(a){var b=0,d,f=a.indexOf(";base64,")+1;
0<f&&(f+=7);a=a.toCharArray();var c=a.length;if(0==c)return Q(0,0);for(var e=c;--e>=f;)b+=65==(d=a[e].charCodeAt(0)&127)||0<JU.Base64.decode64[d]?3:0;for(var b=b>>2,h=Q(b,0),l=18,e=f,k=f=0;e<c;e++)if(0<JU.Base64.decode64[d=a[e].charCodeAt(0)&127]||65==d||61==d)k|=JU.Base64.decode64[d]<<l,l-=6,0>l&&(h[f++]=(k&16711680)>>16,f<b&&(h[f++]=(k&65280)>>8),f<b&&(h[f++]=k&255),l=18,k=0);return h},"~S");C(c$,"base64","ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/","decode64",[0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,62,0,62,0,63,52,53,54,55,56,57,58,59,60,61,0,0,0,0,0,0,0,0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,0,0,0,0,63,0,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,0,0,0,0,0])}),u("JU"),v(["javajs.api.JSONEncodable"],"JU.BS",["java.lang.IndexOutOfBoundsException","$.NegativeArraySizeException","JU.PT","$.SB"],function(){c$=s(function(){this.words=null;this.wordsInUse=0;this.sizeIsSticky=
!1;p(this,arguments)},JU,"BS",null,[Cloneable,javajs.api.JSONEncodable]);c$.wordIndex=c(c$,"wordIndex",function(a){return a>>5},"~N");c(c$,"recalculateWordsInUse",function(){var a;for(a=this.wordsInUse-1;0<=a&&0==this.words[a];a--);this.wordsInUse=a+1});t(c$,function(){this.initWords(32);this.sizeIsSticky=!1});c$.newN=c(c$,"newN",function(a){var b=new JU.BS;b.init(a);return b},"~N");c(c$,"init",function(a){if(0>a)throw new NegativeArraySizeException("nbits < 0: "+a);this.initWords(a);this.sizeIsSticky=
!0},"~N");c(c$,"initWords",function(a){this.words=E(JU.BS.wordIndex(a-1)+1,0)},"~N");c(c$,"ensureCapacity",function(a){this.words.length<a&&(a=Math.max(2*this.words.length,a),this.setLength(a),this.sizeIsSticky=!1)},"~N");c(c$,"expandTo",function(a){a+=1;this.wordsInUse<a&&(this.ensureCapacity(a),this.wordsInUse=a)},"~N");c(c$,"set",function(a){if(0>a)throw new IndexOutOfBoundsException("bitIndex < 0: "+a);var b=JU.BS.wordIndex(a);this.expandTo(b);this.words[b]|=1<<a},"~N");c(c$,"setBitTo",function(a,
b){b?this.set(a):this.clear(a)},"~N,~B");c(c$,"setBits",function(a,b){if(a!=b){var d=JU.BS.wordIndex(a),f=JU.BS.wordIndex(b-1);this.expandTo(f);var c=-1<<a,e=-1>>>-b;if(d==f)this.words[d]|=c&e;else{this.words[d]|=c;for(d+=1;d<f;d++)this.words[d]=-1;this.words[f]|=e}}},"~N,~N");c(c$,"clear",function(a){if(0>a)throw new IndexOutOfBoundsException("bitIndex < 0: "+a);var b=JU.BS.wordIndex(a);b>=this.wordsInUse||(this.words[b]&=~(1<<a),this.recalculateWordsInUse())},"~N");c(c$,"clearBits",function(a,b){if(a!=
b){var d=JU.BS.wordIndex(a);if(!(d>=this.wordsInUse)){var f=JU.BS.wordIndex(b-1);f>=this.wordsInUse&&(b=this.length(),f=this.wordsInUse-1);var c=-1<<a,e=-1>>>-b;if(d==f)this.words[d]&=~(c&e);else{this.words[d]&=~c;for(d+=1;d<f;d++)this.words[d]=0;this.words[f]&=~e}this.recalculateWordsInUse()}}},"~N,~N");c(c$,"clearAll",function(){for(;0<this.wordsInUse;)this.words[--this.wordsInUse]=0});c(c$,"get",function(a){if(0>a)throw new IndexOutOfBoundsException("bitIndex < 0: "+a);var b=JU.BS.wordIndex(a);
return b<this.wordsInUse&&0!=(this.words[b]&1<<a)},"~N");c(c$,"nextSetBit",function(a){if(0>a)throw new IndexOutOfBoundsException("fromIndex < 0: "+a);var b=JU.BS.wordIndex(a);if(b>=this.wordsInUse)return-1;for(a=this.words[b]&-1<<a;;){if(0!=a)return 32*b+Integer.numberOfTrailingZeros(a);if(++b==this.wordsInUse)return-1;a=this.words[b]}},"~N");c(c$,"nextClearBit",function(a){if(0>a)throw new IndexOutOfBoundsException("fromIndex < 0: "+a);var b=JU.BS.wordIndex(a);if(b>=this.wordsInUse)return a;for(a=
~this.words[b]&-1<<a;;){if(0!=a)return 32*b+Integer.numberOfTrailingZeros(a);if(++b==this.wordsInUse)return 32*this.wordsInUse;a=~this.words[b]}},"~N");c(c$,"length",function(){return 0==this.wordsInUse?0:32*(this.wordsInUse-1)+(32-Integer.numberOfLeadingZeros(this.words[this.wordsInUse-1]))});c(c$,"isEmpty",function(){return 0==this.wordsInUse});c(c$,"intersects",function(a){for(var b=Math.min(this.wordsInUse,a.wordsInUse)-1;0<=b;b--)if(0!=(this.words[b]&a.words[b]))return!0;return!1},"JU.BS");c(c$,
"cardinality",function(){for(var a=0,b=0;b<this.wordsInUse;b++)a+=Integer.bitCount(this.words[b]);return a});c(c$,"and",function(a){if(this!==a){for(;this.wordsInUse>a.wordsInUse;)this.words[--this.wordsInUse]=0;for(var b=0;b<this.wordsInUse;b++)this.words[b]&=a.words[b];this.recalculateWordsInUse()}},"JU.BS");c(c$,"or",function(a){if(this!==a){var b=Math.min(this.wordsInUse,a.wordsInUse);this.wordsInUse<a.wordsInUse&&(this.ensureCapacity(a.wordsInUse),this.wordsInUse=a.wordsInUse);for(var d=0;d<
b;d++)this.words[d]|=a.words[d];b<a.wordsInUse&&System.arraycopy(a.words,b,this.words,b,this.wordsInUse-b)}},"JU.BS");c(c$,"xor",function(a){var b=Math.min(this.wordsInUse,a.wordsInUse);this.wordsInUse<a.wordsInUse&&(this.ensureCapacity(a.wordsInUse),this.wordsInUse=a.wordsInUse);for(var d=0;d<b;d++)this.words[d]^=a.words[d];b<a.wordsInUse&&System.arraycopy(a.words,b,this.words,b,a.wordsInUse-b);this.recalculateWordsInUse()},"JU.BS");c(c$,"andNot",function(a){for(var b=Math.min(this.wordsInUse,a.wordsInUse)-
1;0<=b;b--)this.words[b]&=~a.words[b];this.recalculateWordsInUse()},"JU.BS");j(c$,"hashCode",function(){for(var a=1234,b=this.wordsInUse;0<=--b;)a^=this.words[b]*(b+1);return a>>32^a});c(c$,"size",function(){return 32*this.words.length});j(c$,"equals",function(a){if(!q(a,JU.BS))return!1;if(this===a)return!0;if(this.wordsInUse!=a.wordsInUse)return!1;for(var b=0;b<this.wordsInUse;b++)if(this.words[b]!=a.words[b])return!1;return!0},"~O");j(c$,"clone",function(){!this.sizeIsSticky&&this.wordsInUse!=this.words.length&&
this.setLength(this.wordsInUse);return JU.BS.copy(this)});c(c$,"setLength",function(a){var b=E(a,0);System.arraycopy(this.words,0,b,0,Math.min(this.wordsInUse,a));this.words=b},"~N");j(c$,"toString",function(){return JU.BS.escape(this,"{","}")});c$.copy=c(c$,"copy",function(a){var b;b=la(a);var d=a.wordsInUse;0==d?b.words=JU.BS.emptyBitmap:(b.words=E(b.wordsInUse=d,0),System.arraycopy(a.words,0,b.words,0,d));return b},"JU.BS");c(c$,"cardinalityN",function(a){for(var b=this.cardinality(),d=this.length();--d>=
a;)this.get(d)&&b--;return b},"~N");j(c$,"toJSON",function(){var a=128<this.wordsInUse?this.cardinality():32*this.wordsInUse,a=JU.SB.newN(6*a+2);a.appendC("[");var b=this.nextSetBit(0);if(-1!=b){a.appendI(b);for(b=this.nextSetBit(b+1);0<=b;b=this.nextSetBit(b+1)){var d=this.nextClearBit(b);do a.append(", ").appendI(b);while(++b<d)}}a.appendC("]");return a.toString()});c$.escape=c(c$,"escape",function(a,b,d){if(null==a)return b+"{}"+d;var f=new JU.SB;f.append(b+"{");b=a.length();for(var c=-1,e=-2,
h=-1;++h<=b;){var l=a.get(h);if(h==b||0<=c&&!l){0<=c&&e!=c&&f.append((e==c-1?" ":":")+c);if(h==b)break;c=-1}a.get(h)&&(0>c&&(f.append((-2==e?"":" ")+h),e=h),c=h)}f.append("}").appendC(d);return f.toString()},"JU.BS,~S,~S");c$.unescape=c(c$,"unescape",function(a){var b,d;if(null==a||4>(d=(a=a.trim()).length)||a.equalsIgnoreCase("({null})")||"("!=(b=a.charAt(0))&&"["!=b||a.charAt(d-1)!=("("==b?")":"]")||"{"!=a.charAt(1)||a.indexOf("}")!=d-2)return null;for(var f=d-=2;2<=--f;)if(!JU.PT.isDigit(b=a.charAt(f))&&
" "!=b&&"\t"!=b&&":"!=b)return null;for(var c=d;JU.PT.isDigit(a.charAt(--c)););if(++c==d)c=0;else try{c=Integer.parseInt(a.substring(c,d))}catch(e){if(B(e,NumberFormatException))return null;throw e;}for(var h=JU.BS.newN(c),l=c=-1,k=-2,f=2;f<=d;f++)switch(b=a.charAt(f)){case "\t":case " ":case "}":if(0>k)break;if(k<c)return null;c=k;0>l&&(l=k);h.setBits(l,k+1);l=-1;k=-2;break;case ":":l=c=k;k=-2;break;default:JU.PT.isDigit(b)&&(0>k&&(k=0),k=10*k+(b.charCodeAt(0)-48))}return 0<=l?null:h},"~S");C(c$,
"ADDRESS_BITS_PER_WORD",5,"BITS_PER_WORD",32,"WORD_MASK",4294967295,"emptyBitmap",E(0,0))}),u("JU"),v(["java.util.Hashtable"],"JU.CU",["JU.P3","$.PT"],function(){c$=A(JU,"CU");c$.toRGBHexString=c(c$,"toRGBHexString",function(a){var d=a.getRGB();if(0==d)return"000000";a="00"+Integer.toHexString(d>>16&255);a=a.substring(a.length-2);var f="00"+Integer.toHexString(d>>8&255),f=f.substring(f.length-2),d="00"+Integer.toHexString(d&255),d=d.substring(d.length-2);return a+f+d},"javajs.api.GenericColor");c$.toCSSString=
c(c$,"toCSSString",function(a){var d=a.getOpacity255();if(255==d)return"#"+JU.CU.toRGBHexString(a);a=a.getRGB();return"rgba("+(a>>16&255)+","+(a>>8&255)+","+(a&255)+","+d/255+")"},"javajs.api.GenericColor");c$.getArgbFromString=c(c$,"getArgbFromString",function(a){var d=0;if(null==a||0==(d=a.length))return 0;if("["==a.charAt(0)&&"]"==a.charAt(d-1)){var f;if(0<=a.indexOf(",")){f=JU.PT.split(a.substring(1,a.length-1),",");if(3!=f.length)return 0;a=JU.PT.parseFloat(f[0]);d=JU.PT.parseFloat(f[1]);f=JU.PT.parseFloat(f[2]);
return JU.CU.colorTriadToFFRGB(a,d,f)}switch(d){case 9:f="x";break;case 10:f="0x";break;default:return 0}if(1!=a.indexOf(f))return 0;a="#"+a.substring(d-7,d-1);d=7}if(7==d&&"#"==a.charAt(0))try{return JU.PT.parseIntRadix(a.substring(1,7),16)|4278190080}catch(c){if(B(c,Exception))return 0;throw c;}a=JU.CU.mapJavaScriptColors.get(a.toLowerCase());return null==a?0:a.intValue()},"~S");c$.colorTriadToFFRGB=c(c$,"colorTriadToFFRGB",function(a,d,f){1>=a&&(1>=d&&1>=f)&&(0<a&&(a=256*a-1),0<d&&(d=256*d-1),
0<f&&(f=256*f-1));return JU.CU.rgb(z(a),z(d),z(f))},"~N,~N,~N");c$.rgb=c(c$,"rgb",function(a,d,f){return 4278190080|a<<16|d<<8|f},"~N,~N,~N");c$.colorPtFromString=c(c$,"colorPtFromString",function(a){return JU.CU.colorPtFromInt(JU.CU.getArgbFromString(a),null)},"~S");c$.colorPtFromInt=c(c$,"colorPtFromInt",function(a,d){null==d&&(d=new JU.P3);d.set(a>>16&255,a>>8&255,a&255);return d},"~N,JU.P3");c$.colorPtToFFRGB=c(c$,"colorPtToFFRGB",function(a){return JU.CU.colorTriadToFFRGB(a.x,a.y,a.z)},"JU.T3");
c$.toRGB3f=c(c$,"toRGB3f",function(a,d){d[0]=(a>>16&255)/255;d[1]=(a>>8&255)/255;d[2]=(a&255)/255},"~N,~A");c$.toFFGGGfromRGB=c(c$,"toFFGGGfromRGB",function(a){a=x((2989*(a>>16&255)+5870*(a>>8&255)+1140*(a&255)+5E3)/1E4)&16777215;return JU.CU.rgb(a,a,a)},"~N");c$.rgbToHSL=c(c$,"rgbToHSL",function(a,d){var f=a.x/255,c=a.y/255,e=a.z/255,h=Math.min(f,Math.min(c,e)),l=Math.max(f,Math.max(c,e)),k=l+h,h=l-h,f=60*(0==h?0:l==f?(c-e)/h+6:l==c?(e-f)/h+2:(f-c)/h+4)%360,c=h/(0==h?1:1>=k?k:2-k);return d?JU.P3.new3(Math.round(10*
f)/10,Math.round(1E3*c)/10,Math.round(500*k)/10):JU.P3.new3(f,100*c,50*k)},"JU.P3,~B");c$.hslToRGB=c(c$,"hslToRGB",function(a){var d=Math.max(0,Math.min(360,a.x))/60,f=Math.max(0,Math.min(100,a.y))/100;a=Math.max(0,Math.min(100,a.z))/100;var f=a-(0.5>a?a:1-a)*f,c=2*(a-f);a=JU.CU.toRGB(f,c,d+2);var e=JU.CU.toRGB(f,c,d),d=JU.CU.toRGB(f,c,d-2);return JU.P3.new3(Math.round(255*a),Math.round(255*e),Math.round(255*d))},"JU.P3");c$.toRGB=c(c$,"toRGB",function(a,d,f){return 1>(f+=0>f?6:6<f?-6:0)?a+d*f:3>
f?a+d:4>f?a+d*(4-f):a},"~N,~N,~N");C(c$,"colorNames","black pewhite pecyan pepurple pegreen peblue peviolet pebrown pepink peyellow pedarkgreen peorange pelightblue pedarkcyan pedarkgray aliceblue antiquewhite aqua aquamarine azure beige bisque blanchedalmond blue blueviolet brown burlywood cadetblue chartreuse chocolate coral cornflowerblue cornsilk crimson cyan darkblue darkcyan darkgoldenrod darkgray darkgreen darkkhaki darkmagenta darkolivegreen darkorange darkorchid darkred darksalmon darkseagreen darkslateblue darkslategray darkturquoise darkviolet deeppink deepskyblue dimgray dodgerblue firebrick floralwhite forestgreen fuchsia gainsboro ghostwhite gold goldenrod gray green greenyellow honeydew hotpink indianred indigo ivory khaki lavender lavenderblush lawngreen lemonchiffon lightblue lightcoral lightcyan lightgoldenrodyellow lightgreen lightgrey lightpink lightsalmon lightseagreen lightskyblue lightslategray lightsteelblue lightyellow lime limegreen linen magenta maroon mediumaquamarine mediumblue mediumorchid mediumpurple mediumseagreen mediumslateblue mediumspringgreen mediumturquoise mediumvioletred midnightblue mintcream mistyrose moccasin navajowhite navy oldlace olive olivedrab orange orangered orchid palegoldenrod palegreen paleturquoise palevioletred papayawhip peachpuff peru pink plum powderblue purple red rosybrown royalblue saddlebrown salmon sandybrown seagreen seashell sienna silver skyblue slateblue slategray snow springgreen steelblue tan teal thistle tomato turquoise violet wheat white whitesmoke yellow yellowgreen bluetint greenblue greentint grey pinktint redorange yellowtint".split(" "),
"colorArgbs",[4278190080,4294967295,4278255615,4291830015,4278255360,4284506367,4294934720,4288946216,4294957272,4294967040,4278239232,4294946816,4289769727,4278231200,4284506208,4293982463,4294634455,4278255615,4286578644,4293984255,4294309340,4294960324,4294962125,4278190335,4287245282,4289014314,4292786311,4284456608,4286578432,4291979550,4294934352,4284782061,4294965468,4292613180,4278255615,4278190219,4278225803,4290283019,4289309097,4278215680,4290623339,4287299723,4283788079,4294937600,4288230092,
4287299584,4293498490,4287609999,4282924427,4281290575,4278243025,4287889619,4294907027,4278239231,4285098345,4280193279,4289864226,4294966E3,4280453922,4294902015,4292664540,4294506751,4294956800,4292519200,4286611584,4278222848,4289593135,4293984240,4294928820,4291648604,4283105410,4294967280,4293977740,4293322490,4294963445,4286381056,4294965965,4289583334,4293951616,4292935679,4294638290,4287688336,4292072403,4294948545,4294942842,4280332970,4287090426,4286023833,4289774814,4294967264,4278255360,
4281519410,4294635750,4294902015,4286578688,4284927402,4278190285,4290401747,4287852763,4282168177,4286277870,4278254234,4282962380,4291237253,4279834992,4294311930,4294960353,4294960309,4294958765,4278190208,4294833638,4286611456,4285238819,4294944E3,4294919424,4292505814,4293847210,4288215960,4289720046,4292571283,4294963157,4294957753,4291659071,4294951115,4292714717,4289781990,4286578816,4294901760,4290547599,4282477025,4287317267,4294606962,4294222944,4281240407,4294964718,4288696877,4290822336,
4287090411,4285160141,4285563024,4294966010,4278255487,4282811060,4291998860,4278222976,4292394968,4294927175,4282441936,4293821166,4294303411,4294967295,4294309365,4294967040,4288335154,4289714175,4281240407,4288217011,4286611584,4294945723,4294919424,4294375029]);c$.mapJavaScriptColors=c$.prototype.mapJavaScriptColors=new java.util.Hashtable;for(var a=JU.CU.colorNames.length;0<=--a;)JU.CU.mapJavaScriptColors.put(JU.CU.colorNames[a],Integer.$valueOf(JU.CU.colorArgbs[a]))}),u("JU"),v(["java.lang.Boolean"],
"JU.DF",["java.lang.Double","$.Float","JU.PT","$.SB"],function(){c$=A(JU,"DF");c$.setUseNumberLocalization=c(c$,"setUseNumberLocalization",function(a){JU.DF.useNumberLocalization[0]=a?Boolean.TRUE:Boolean.FALSE},"~B");c$.formatDecimalDbl=c(c$,"formatDecimalDbl",function(a,b){return 2147483647==b||-Infinity==a||Infinity==a||Double.isNaN(a)?""+a:JU.DF.formatDecimal(a,b)},"~N,~N");c$.formatDecimal=c(c$,"formatDecimal",function(a,b){if(2147483647==b||-Infinity==a||Infinity==a||Float.isNaN(a))return""+
a;var d;if(0>b){b=-b;b>JU.DF.formattingStrings.length&&(b=JU.DF.formattingStrings.length);if(0==a)return JU.DF.formattingStrings[b]+"E+0";var f;1>Math.abs(a)?(d=10,f=1E-10*a):(d=-10,f=1E10*a);f=(""+f).toUpperCase();var c=f.indexOf("E");d=JU.PT.parseInt(f.substring(c+1))+d;return 0>c?""+a:JU.DF.formatDecimal(JU.PT.parseFloat(f.substring(0,c)),b-1)+"E"+(0<=d?"+":"")+d}b>=JU.DF.formattingStrings.length&&(b=JU.DF.formattingStrings.length-1);f=(""+a).toUpperCase();var e=f.startsWith("-");e&&(f=f.substring(1));
d=f.indexOf(".");if(0>d)return f+JU.DF.formattingStrings[b].substring(1);c=f.indexOf("E-");0<c&&(d=JU.PT.parseInt(f.substring(c+1)),f="0."+"0000000000000000000000000000000000000000".substring(0,-d-1)+f.substring(0,1)+f.substring(2,c),d=1);c=f.indexOf("E");0<c&&(d=JU.PT.parseInt(f.substring(c+1)),f=f.substring(0,1)+f.substring(2,c)+"0000000000000000000000000000000000000000",f=f.substring(0,d+1)+"."+f.substring(d+1),d=f.indexOf("."));var h=f.length,c=b+d+1;if(c<h&&"5"<=f.charAt(c))return JU.DF.formatDecimal(a+
(e?-1:1)*JU.DF.formatAdds[b],b);for(var l=JU.SB.newS(f.substring(0,0==b?d:++d)),c=0;c<b;c++,d++)d<h?l.appendC(f.charAt(d)):l.appendC("0");f=(e?"-":"")+l;return Boolean.TRUE.equals(JU.DF.useNumberLocalization[0])?f:f.$replace(",",".")},"~N,~N");c$.formatDecimalTrimmed=c(c$,"formatDecimalTrimmed",function(a,b){for(var d=JU.DF.formatDecimalDbl(a,b),f=d.length-1;0<=f&&"0"==d.charAt(f);)f--;return d.substring(0,f+1)},"~N,~N");C(c$,"formattingStrings","0 0.0 0.00 0.000 0.0000 0.00000 0.000000 0.0000000 0.00000000 0.000000000".split(" "),
"zeros","0000000000000000000000000000000000000000","formatAdds",[0.5,0.05,0.005,5E-4,5E-5,5E-6,5E-7,5E-8,5E-9,5E-10]);c$.useNumberLocalization=c$.prototype.useNumberLocalization=[Boolean.TRUE]}),u("JU"),v(["java.lang.Enum"],"JU.Encoding",null,function(){c$=A(JU,"Encoding",Enum);D(c$,"NONE",0,[]);D(c$,"UTF8",1,[]);D(c$,"UTF_16BE",2,[]);D(c$,"UTF_16LE",3,[]);D(c$,"UTF_32BE",4,[]);D(c$,"UTF_32LE",5,[])}),u("JU"),v(["java.util.ArrayList"],"JU.Lst",null,function(){c$=A(JU,"Lst",java.util.ArrayList);c(c$,
"addLast",function(a){return this.add1(a)},"~O");c(c$,"removeObj",function(a){return this.removeObject(a)},"~O")}),u("JU"),v(null,"JU.M34",["java.lang.ArrayIndexOutOfBoundsException"],function(){c$=s(function(){this.m22=this.m21=this.m20=this.m12=this.m11=this.m10=this.m02=this.m01=this.m00=0;p(this,arguments)},JU,"M34");c(c$,"setAA33",function(a){var b=a.x,d=a.y,f=a.z;a=a.angle;var c=Math.sqrt(b*b+d*d+f*f),c=1/c,b=b*c,d=d*c,f=f*c,e=Math.cos(a);a=Math.sin(a);c=1-e;this.m00=e+b*b*c;this.m11=e+d*d*
c;this.m22=e+f*f*c;var e=b*d*c,h=f*a;this.m01=e-h;this.m10=e+h;e=b*f*c;h=d*a;this.m02=e+h;this.m20=e-h;e=d*f*c;h=b*a;this.m12=e-h;this.m21=e+h},"JU.A4");c(c$,"rotate",function(a){this.rotate2(a,a)},"JU.T3");c(c$,"rotate2",function(a,b){b.set(this.m00*a.x+this.m01*a.y+this.m02*a.z,this.m10*a.x+this.m11*a.y+this.m12*a.z,this.m20*a.x+this.m21*a.y+this.m22*a.z)},"JU.T3,JU.T3");c(c$,"setM33",function(a){this.m00=a.m00;this.m01=a.m01;this.m02=a.m02;this.m10=a.m10;this.m11=a.m11;this.m12=a.m12;this.m20=
a.m20;this.m21=a.m21;this.m22=a.m22},"JU.M34");c(c$,"clear33",function(){this.m00=this.m01=this.m02=this.m10=this.m11=this.m12=this.m20=this.m21=this.m22=0});c(c$,"set33",function(a,b,d){switch(a){case 0:switch(b){case 0:this.m00=d;return;case 1:this.m01=d;return;case 2:this.m02=d;return}break;case 1:switch(b){case 0:this.m10=d;return;case 1:this.m11=d;return;case 2:this.m12=d;return}break;case 2:switch(b){case 0:this.m20=d;return;case 1:this.m21=d;return;case 2:this.m22=d;return}}this.err()},"~N,~N,~N");
c(c$,"get33",function(a,b){switch(a){case 0:switch(b){case 0:return this.m00;case 1:return this.m01;case 2:return this.m02}break;case 1:switch(b){case 0:return this.m10;case 1:return this.m11;case 2:return this.m12}break;case 2:switch(b){case 0:return this.m20;case 1:return this.m21;case 2:return this.m22}}this.err();return 0},"~N,~N");c(c$,"setRow33",function(a,b){switch(a){case 0:this.m00=b[0];this.m01=b[1];this.m02=b[2];break;case 1:this.m10=b[0];this.m11=b[1];this.m12=b[2];break;case 2:this.m20=
b[0];this.m21=b[1];this.m22=b[2];break;default:this.err()}},"~N,~A");c(c$,"getRow33",function(a,b){switch(a){case 0:b[0]=this.m00;b[1]=this.m01;b[2]=this.m02;return;case 1:b[0]=this.m10;b[1]=this.m11;b[2]=this.m12;return;case 2:b[0]=this.m20;b[1]=this.m21;b[2]=this.m22;return}this.err()},"~N,~A");c(c$,"setColumn33",function(a,b){switch(a){case 0:this.m00=b[0];this.m10=b[1];this.m20=b[2];break;case 1:this.m01=b[0];this.m11=b[1];this.m21=b[2];break;case 2:this.m02=b[0];this.m12=b[1];this.m22=b[2];break;
default:this.err()}},"~N,~A");c(c$,"getColumn33",function(a,b){switch(a){case 0:b[0]=this.m00;b[1]=this.m10;b[2]=this.m20;break;case 1:b[0]=this.m01;b[1]=this.m11;b[2]=this.m21;break;case 2:b[0]=this.m02;b[1]=this.m12;b[2]=this.m22;break;default:this.err()}},"~N,~A");c(c$,"add33",function(a){this.m00+=a.m00;this.m01+=a.m01;this.m02+=a.m02;this.m10+=a.m10;this.m11+=a.m11;this.m12+=a.m12;this.m20+=a.m20;this.m21+=a.m21;this.m22+=a.m22},"JU.M34");c(c$,"sub33",function(a){this.m00-=a.m00;this.m01-=a.m01;
this.m02-=a.m02;this.m10-=a.m10;this.m11-=a.m11;this.m12-=a.m12;this.m20-=a.m20;this.m21-=a.m21;this.m22-=a.m22},"JU.M34");c(c$,"mul33",function(a){this.m00*=a;this.m01*=a;this.m02*=a;this.m10*=a;this.m11*=a;this.m12*=a;this.m20*=a;this.m21*=a;this.m22*=a},"~N");c(c$,"transpose33",function(){var a=this.m01;this.m01=this.m10;this.m10=a;a=this.m02;this.m02=this.m20;this.m20=a;a=this.m12;this.m12=this.m21;this.m21=a});c(c$,"setXRot",function(a){var b=Math.cos(a);a=Math.sin(a);this.m00=1;this.m10=this.m02=
this.m01=0;this.m11=b;this.m12=-a;this.m20=0;this.m21=a;this.m22=b},"~N");c(c$,"setYRot",function(a){var b=Math.cos(a);a=Math.sin(a);this.m00=b;this.m01=0;this.m02=a;this.m10=0;this.m11=1;this.m12=0;this.m20=-a;this.m21=0;this.m22=b},"~N");c(c$,"setZRot",function(a){var b=Math.cos(a);a=Math.sin(a);this.m00=b;this.m01=-a;this.m02=0;this.m10=a;this.m11=b;this.m21=this.m20=this.m12=0;this.m22=1},"~N");c(c$,"determinant3",function(){return this.m00*(this.m11*this.m22-this.m21*this.m12)-this.m01*(this.m10*
this.m22-this.m20*this.m12)+this.m02*(this.m10*this.m21-this.m20*this.m11)});c(c$,"err",function(){throw new ArrayIndexOutOfBoundsException("matrix column/row out of bounds");})}),u("JU"),v(["JU.M34"],"JU.M3",["JU.T3"],function(){c$=A(JU,"M3",JU.M34,java.io.Serializable);c$.newA9=c(c$,"newA9",function(a){var b=new JU.M3;b.setA(a);return b},"~A");c$.newM3=c(c$,"newM3",function(a){var b=new JU.M3;if(null==a)return b.setScale(1),b;b.m00=a.m00;b.m01=a.m01;b.m02=a.m02;b.m10=a.m10;b.m11=a.m11;b.m12=a.m12;
b.m20=a.m20;b.m21=a.m21;b.m22=a.m22;return b},"JU.M3");c(c$,"setScale",function(a){this.clear33();this.m00=this.m11=this.m22=a},"~N");c(c$,"setM3",function(a){this.setM33(a)},"JU.M34");c(c$,"setA",function(a){this.m00=a[0];this.m01=a[1];this.m02=a[2];this.m10=a[3];this.m11=a[4];this.m12=a[5];this.m20=a[6];this.m21=a[7];this.m22=a[8]},"~A");c(c$,"setElement",function(a,b,d){this.set33(a,b,d)},"~N,~N,~N");c(c$,"getElement",function(a,b){return this.get33(a,b)},"~N,~N");c(c$,"setRow",function(a,b,d,
f){switch(a){case 0:this.m00=b;this.m01=d;this.m02=f;break;case 1:this.m10=b;this.m11=d;this.m12=f;break;case 2:this.m20=b;this.m21=d;this.m22=f;break;default:this.err()}},"~N,~N,~N,~N");c(c$,"setRowV",function(a,b){switch(a){case 0:this.m00=b.x;this.m01=b.y;this.m02=b.z;break;case 1:this.m10=b.x;this.m11=b.y;this.m12=b.z;break;case 2:this.m20=b.x;this.m21=b.y;this.m22=b.z;break;default:this.err()}},"~N,JU.T3");c(c$,"setRowA",function(a,b){this.setRow33(a,b)},"~N,~A");j(c$,"getRow",function(a,b){this.getRow33(a,
b)},"~N,~A");c(c$,"setColumn3",function(a,b,d,f){switch(a){case 0:this.m00=b;this.m10=d;this.m20=f;break;case 1:this.m01=b;this.m11=d;this.m21=f;break;case 2:this.m02=b;this.m12=d;this.m22=f;break;default:this.err()}},"~N,~N,~N,~N");c(c$,"setColumnV",function(a,b){switch(a){case 0:this.m00=b.x;this.m10=b.y;this.m20=b.z;break;case 1:this.m01=b.x;this.m11=b.y;this.m21=b.z;break;case 2:this.m02=b.x;this.m12=b.y;this.m22=b.z;break;default:this.err()}},"~N,JU.T3");c(c$,"getColumnV",function(a,b){switch(a){case 0:b.x=
this.m00;b.y=this.m10;b.z=this.m20;break;case 1:b.x=this.m01;b.y=this.m11;b.z=this.m21;break;case 2:b.x=this.m02;b.y=this.m12;b.z=this.m22;break;default:this.err()}},"~N,JU.T3");c(c$,"setColumnA",function(a,b){this.setColumn33(a,b)},"~N,~A");c(c$,"getColumn",function(a,b){this.getColumn33(a,b)},"~N,~A");c(c$,"add",function(a){this.add33(a)},"JU.M3");c(c$,"sub",function(a){this.sub33(a)},"JU.M3");c(c$,"transpose",function(){this.transpose33()});c(c$,"transposeM",function(a){this.setM33(a);this.transpose33()},
"JU.M3");c(c$,"invertM",function(a){this.setM33(a);this.invert()},"JU.M3");c(c$,"invert",function(){var a=this.determinant3();0!=a&&(a=1/a,this.set9(this.m11*this.m22-this.m12*this.m21,this.m02*this.m21-this.m01*this.m22,this.m01*this.m12-this.m02*this.m11,this.m12*this.m20-this.m10*this.m22,this.m00*this.m22-this.m02*this.m20,this.m02*this.m10-this.m00*this.m12,this.m10*this.m21-this.m11*this.m20,this.m01*this.m20-this.m00*this.m21,this.m00*this.m11-this.m01*this.m10),this.scale(a))});c(c$,"setAsXRotation",
function(a){this.setXRot(a);return this},"~N");c(c$,"setAsYRotation",function(a){this.setYRot(a);return this},"~N");c(c$,"setAsZRotation",function(a){this.setZRot(a);return this},"~N");c(c$,"scale",function(a){this.mul33(a)},"~N");c(c$,"mul",function(a){this.mul2(this,a)},"JU.M3");c(c$,"mul2",function(a,b){this.set9(a.m00*b.m00+a.m01*b.m10+a.m02*b.m20,a.m00*b.m01+a.m01*b.m11+a.m02*b.m21,a.m00*b.m02+a.m01*b.m12+a.m02*b.m22,a.m10*b.m00+a.m11*b.m10+a.m12*b.m20,a.m10*b.m01+a.m11*b.m11+a.m12*b.m21,a.m10*
b.m02+a.m11*b.m12+a.m12*b.m22,a.m20*b.m00+a.m21*b.m10+a.m22*b.m20,a.m20*b.m01+a.m21*b.m11+a.m22*b.m21,a.m20*b.m02+a.m21*b.m12+a.m22*b.m22)},"JU.M3,JU.M3");j(c$,"equals",function(a){return!q(a,JU.M3)?!1:this.m00==a.m00&&this.m01==a.m01&&this.m02==a.m02&&this.m10==a.m10&&this.m11==a.m11&&this.m12==a.m12&&this.m20==a.m20&&this.m21==a.m21&&this.m22==a.m22},"~O");j(c$,"hashCode",function(){return JU.T3.floatToIntBits0(this.m00)^JU.T3.floatToIntBits0(this.m01)^JU.T3.floatToIntBits0(this.m02)^JU.T3.floatToIntBits0(this.m10)^
JU.T3.floatToIntBits0(this.m11)^JU.T3.floatToIntBits0(this.m12)^JU.T3.floatToIntBits0(this.m20)^JU.T3.floatToIntBits0(this.m21)^JU.T3.floatToIntBits0(this.m22)});c(c$,"setZero",function(){this.clear33()});c(c$,"set9",function(a,b,d,f,c,e,h,l,k){this.m00=a;this.m01=b;this.m02=d;this.m10=f;this.m11=c;this.m12=e;this.m20=h;this.m21=l;this.m22=k},"~N,~N,~N,~N,~N,~N,~N,~N,~N");j(c$,"toString",function(){return"[\n  ["+this.m00+"\t"+this.m01+"\t"+this.m02+"]\n  ["+this.m10+"\t"+this.m11+"\t"+this.m12+"]\n  ["+
this.m20+"\t"+this.m21+"\t"+this.m22+"] ]"});c(c$,"setAA",function(a){this.setAA33(a);return this},"JU.A4");c(c$,"setAsBallRotation",function(a,b,d){var f=Math.sqrt(b*b+d*d),c=f*a;if(0==c)return this.setScale(1),!1;a=Math.cos(c);c=Math.sin(c);d=-d/f;b/=f;f=a-1;this.m00=1+f*d*d;this.m01=this.m10=f*d*b;this.m20=-(this.m02=c*d);this.m11=1+f*b*b;this.m21=-(this.m12=c*b);this.m22=a;return!0},"~N,~N,~N");c(c$,"isRotation",function(){return 0.001>Math.abs(this.determinant3()-1)})}),u("JU"),v(["JU.M34"],
"JU.M4",["JU.T3"],function(){c$=s(function(){this.m33=this.m32=this.m31=this.m30=this.m23=this.m13=this.m03=0;p(this,arguments)},JU,"M4",JU.M34);c$.newA16=c(c$,"newA16",function(a){var b=new JU.M4;b.m00=a[0];b.m01=a[1];b.m02=a[2];b.m03=a[3];b.m10=a[4];b.m11=a[5];b.m12=a[6];b.m13=a[7];b.m20=a[8];b.m21=a[9];b.m22=a[10];b.m23=a[11];b.m30=a[12];b.m31=a[13];b.m32=a[14];b.m33=a[15];return b},"~A");c$.newM4=c(c$,"newM4",function(a){var b=new JU.M4;if(null==a)return b.setIdentity(),b;b.setToM3(a);b.m03=a.m03;
b.m13=a.m13;b.m23=a.m23;b.m30=a.m30;b.m31=a.m31;b.m32=a.m32;b.m33=a.m33;return b},"JU.M4");c$.newMV=c(c$,"newMV",function(a,b){var d=new JU.M4;d.setMV(a,b);return d},"JU.M3,JU.T3");c(c$,"setZero",function(){this.clear33();this.m03=this.m13=this.m23=this.m30=this.m31=this.m32=this.m33=0});c(c$,"setIdentity",function(){this.setZero();this.m00=this.m11=this.m22=this.m33=1});c(c$,"setM4",function(a){this.setM33(a);this.m03=a.m03;this.m13=a.m13;this.m23=a.m23;this.m30=a.m30;this.m31=a.m31;this.m32=a.m32;
this.m33=a.m33;return this},"JU.M4");c(c$,"setMV",function(a,b){this.setM33(a);this.setTranslation(b);this.m33=1},"JU.M3,JU.T3");c(c$,"setToM3",function(a){this.setM33(a);this.m03=this.m13=this.m23=this.m30=this.m31=this.m32=0;this.m33=1},"JU.M34");c(c$,"setToAA",function(a){this.setIdentity();this.setAA33(a)},"JU.A4");c(c$,"setA",function(a){this.m00=a[0];this.m01=a[1];this.m02=a[2];this.m03=a[3];this.m10=a[4];this.m11=a[5];this.m12=a[6];this.m13=a[7];this.m20=a[8];this.m21=a[9];this.m22=a[10];this.m23=
a[11];this.m30=a[12];this.m31=a[13];this.m32=a[14];this.m33=a[15]},"~A");c(c$,"setTranslation",function(a){this.m03=a.x;this.m13=a.y;this.m23=a.z},"JU.T3");c(c$,"setElement",function(a,b,d){if(3>a&&3>b)this.set33(a,b,d);else{(3<a||3<b)&&this.err();switch(a){case 0:this.m03=d;return;case 1:this.m13=d;return;case 2:this.m23=d;return}switch(b){case 0:this.m30=d;break;case 1:this.m31=d;break;case 2:this.m32=d;break;case 3:this.m33=d}}},"~N,~N,~N");c(c$,"getElement",function(a,b){if(3>a&&3>b)return this.get33(a,
b);if(3<a||3<b)return this.err(),0;switch(a){case 0:return this.m03;case 1:return this.m13;case 2:return this.m23;default:switch(b){case 0:return this.m30;case 1:return this.m31;case 2:return this.m32;default:return this.m33}}},"~N,~N");c(c$,"getTranslation",function(a){a.x=this.m03;a.y=this.m13;a.z=this.m23},"JU.T3");c(c$,"getRotationScale",function(a){a.m00=this.m00;a.m01=this.m01;a.m02=this.m02;a.m10=this.m10;a.m11=this.m11;a.m12=this.m12;a.m20=this.m20;a.m21=this.m21;a.m22=this.m22},"JU.M3");
c(c$,"setRotationScale",function(a){this.m00=a.m00;this.m01=a.m01;this.m02=a.m02;this.m10=a.m10;this.m11=a.m11;this.m12=a.m12;this.m20=a.m20;this.m21=a.m21;this.m22=a.m22},"JU.M3");c(c$,"setRowA",function(a,b){3>a&&this.setRow33(a,b);switch(a){case 0:this.m03=b[3];return;case 1:this.m13=b[3];return;case 2:this.m23=b[3];return;case 3:this.m30=b[0];this.m31=b[1];this.m32=b[2];this.m33=b[3];return}this.err()},"~N,~A");j(c$,"getRow",function(a,b){3>a&&this.getRow33(a,b);switch(a){case 0:b[3]=this.m03;
return;case 1:b[3]=this.m13;return;case 2:b[3]=this.m23;return;case 3:b[0]=this.m30;b[1]=this.m31;b[2]=this.m32;b[3]=this.m33;return}this.err()},"~N,~A");c(c$,"setColumn4",function(a,b,d,f,c){0==a?(this.m00=b,this.m10=d,this.m20=f,this.m30=c):1==a?(this.m01=b,this.m11=d,this.m21=f,this.m31=c):2==a?(this.m02=b,this.m12=d,this.m22=f,this.m32=c):3==a?(this.m03=b,this.m13=d,this.m23=f,this.m33=c):this.err()},"~N,~N,~N,~N,~N");c(c$,"setColumnA",function(a,b){3>a&&this.setColumn33(a,b);switch(a){case 0:this.m30=
b[3];break;case 1:this.m31=b[3];break;case 2:this.m32=b[3];break;case 3:this.m03=b[0];this.m13=b[1];this.m23=b[2];this.m33=b[3];break;default:this.err()}},"~N,~A");c(c$,"getColumn",function(a,b){3>a&&this.getColumn33(a,b);switch(a){case 0:b[3]=this.m30;break;case 1:b[3]=this.m31;break;case 2:b[3]=this.m32;break;case 3:b[0]=this.m03;b[1]=this.m13;b[2]=this.m23;b[3]=this.m33;break;default:this.err()}},"~N,~A");c(c$,"sub",function(a){this.sub33(a);this.m03-=a.m03;this.m13-=a.m13;this.m23-=a.m23;this.m30-=
a.m30;this.m31-=a.m31;this.m32-=a.m32;this.m33-=a.m33},"JU.M4");c(c$,"transpose",function(){this.transpose33();var a=this.m03;this.m03=this.m30;this.m30=a;a=this.m13;this.m13=this.m31;this.m31=a;a=this.m23;this.m23=this.m32;this.m32=a});c(c$,"invert",function(){var a=this.determinant4();if(0==a)return this;a=1/a;this.set(this.m11*(this.m22*this.m33-this.m23*this.m32)+this.m12*(this.m23*this.m31-this.m21*this.m33)+this.m13*(this.m21*this.m32-this.m22*this.m31),this.m21*(this.m02*this.m33-this.m03*
this.m32)+this.m22*(this.m03*this.m31-this.m01*this.m33)+this.m23*(this.m01*this.m32-this.m02*this.m31),this.m31*(this.m02*this.m13-this.m03*this.m12)+this.m32*(this.m03*this.m11-this.m01*this.m13)+this.m33*(this.m01*this.m12-this.m02*this.m11),this.m01*(this.m13*this.m22-this.m12*this.m23)+this.m02*(this.m11*this.m23-this.m13*this.m21)+this.m03*(this.m12*this.m21-this.m11*this.m22),this.m12*(this.m20*this.m33-this.m23*this.m30)+this.m13*(this.m22*this.m30-this.m20*this.m32)+this.m10*(this.m23*this.m32-
this.m22*this.m33),this.m22*(this.m00*this.m33-this.m03*this.m30)+this.m23*(this.m02*this.m30-this.m00*this.m32)+this.m20*(this.m03*this.m32-this.m02*this.m33),this.m32*(this.m00*this.m13-this.m03*this.m10)+this.m33*(this.m02*this.m10-this.m00*this.m12)+this.m30*(this.m03*this.m12-this.m02*this.m13),this.m02*(this.m13*this.m20-this.m10*this.m23)+this.m03*(this.m10*this.m22-this.m12*this.m20)+this.m00*(this.m12*this.m23-this.m13*this.m22),this.m13*(this.m20*this.m31-this.m21*this.m30)+this.m10*(this.m21*
this.m33-this.m23*this.m31)+this.m11*(this.m23*this.m30-this.m20*this.m33),this.m23*(this.m00*this.m31-this.m01*this.m30)+this.m20*(this.m01*this.m33-this.m03*this.m31)+this.m21*(this.m03*this.m30-this.m00*this.m33),this.m33*(this.m00*this.m11-this.m01*this.m10)+this.m30*(this.m01*this.m13-this.m03*this.m11)+this.m31*(this.m03*this.m10-this.m00*this.m13),this.m03*(this.m11*this.m20-this.m10*this.m21)+this.m00*(this.m13*this.m21-this.m11*this.m23)+this.m01*(this.m10*this.m23-this.m13*this.m20),this.m10*
(this.m22*this.m31-this.m21*this.m32)+this.m11*(this.m20*this.m32-this.m22*this.m30)+this.m12*(this.m21*this.m30-this.m20*this.m31),this.m20*(this.m02*this.m31-this.m01*this.m32)+this.m21*(this.m00*this.m32-this.m02*this.m30)+this.m22*(this.m01*this.m30-this.m00*this.m31),this.m30*(this.m02*this.m11-this.m01*this.m12)+this.m31*(this.m00*this.m12-this.m02*this.m10)+this.m32*(this.m01*this.m10-this.m00*this.m11),this.m00*(this.m11*this.m22-this.m12*this.m21)+this.m01*(this.m12*this.m20-this.m10*this.m22)+
this.m02*(this.m10*this.m21-this.m11*this.m20));this.scale(a);return this});c(c$,"set",function(a,b,d,f,c,e,h,l,k,j,m,r,y,w,F,G){this.m00=a;this.m01=b;this.m02=d;this.m03=f;this.m10=c;this.m11=e;this.m12=h;this.m13=l;this.m20=k;this.m21=j;this.m22=m;this.m23=r;this.m30=y;this.m31=w;this.m32=F;this.m33=G},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");c(c$,"determinant4",function(){return(this.m00*this.m11-this.m01*this.m10)*(this.m22*this.m33-this.m23*this.m32)-(this.m00*this.m12-this.m02*this.m10)*
(this.m21*this.m33-this.m23*this.m31)+(this.m00*this.m13-this.m03*this.m10)*(this.m21*this.m32-this.m22*this.m31)+(this.m01*this.m12-this.m02*this.m11)*(this.m20*this.m33-this.m23*this.m30)-(this.m01*this.m13-this.m03*this.m11)*(this.m20*this.m32-this.m22*this.m30)+(this.m02*this.m13-this.m03*this.m12)*(this.m20*this.m31-this.m21*this.m30)});c(c$,"scale",function(a){this.mul33(a);this.m03*=a;this.m13*=a;this.m23*=a;this.m30*=a;this.m31*=a;this.m32*=a;this.m33*=a},"~N");c(c$,"mul",function(a){this.mul2(this,
a)},"JU.M4");c(c$,"mul2",function(a,b){this.set(a.m00*b.m00+a.m01*b.m10+a.m02*b.m20+a.m03*b.m30,a.m00*b.m01+a.m01*b.m11+a.m02*b.m21+a.m03*b.m31,a.m00*b.m02+a.m01*b.m12+a.m02*b.m22+a.m03*b.m32,a.m00*b.m03+a.m01*b.m13+a.m02*b.m23+a.m03*b.m33,a.m10*b.m00+a.m11*b.m10+a.m12*b.m20+a.m13*b.m30,a.m10*b.m01+a.m11*b.m11+a.m12*b.m21+a.m13*b.m31,a.m10*b.m02+a.m11*b.m12+a.m12*b.m22+a.m13*b.m32,a.m10*b.m03+a.m11*b.m13+a.m12*b.m23+a.m13*b.m33,a.m20*b.m00+a.m21*b.m10+a.m22*b.m20+a.m23*b.m30,a.m20*b.m01+a.m21*b.m11+
a.m22*b.m21+a.m23*b.m31,a.m20*b.m02+a.m21*b.m12+a.m22*b.m22+a.m23*b.m32,a.m20*b.m03+a.m21*b.m13+a.m22*b.m23+a.m23*b.m33,a.m30*b.m00+a.m31*b.m10+a.m32*b.m20+a.m33*b.m30,a.m30*b.m01+a.m31*b.m11+a.m32*b.m21+a.m33*b.m31,a.m30*b.m02+a.m31*b.m12+a.m32*b.m22+a.m33*b.m32,a.m30*b.m03+a.m31*b.m13+a.m32*b.m23+a.m33*b.m33)},"JU.M4,JU.M4");c(c$,"transform",function(a){this.transform2(a,a)},"JU.T4");c(c$,"transform2",function(a,b){b.set4(this.m00*a.x+this.m01*a.y+this.m02*a.z+this.m03*a.w,this.m10*a.x+this.m11*
a.y+this.m12*a.z+this.m13*a.w,this.m20*a.x+this.m21*a.y+this.m22*a.z+this.m23*a.w,this.m30*a.x+this.m31*a.y+this.m32*a.z+this.m33*a.w)},"JU.T4,JU.T4");c(c$,"rotTrans",function(a){this.rotTrans2(a,a)},"JU.T3");c(c$,"rotTrans2",function(a,b){b.set(this.m00*a.x+this.m01*a.y+this.m02*a.z+this.m03,this.m10*a.x+this.m11*a.y+this.m12*a.z+this.m13,this.m20*a.x+this.m21*a.y+this.m22*a.z+this.m23);return b},"JU.T3,JU.T3");c(c$,"setAsXYRotation",function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);
this.m22=b;this.m23=-a;this.m32=a;this.m33=b;return this},"~N");c(c$,"setAsYZRotation",function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);this.m00=b;this.m03=-a;this.m30=a;this.m33=b;return this},"~N");c(c$,"setAsXZRotation",function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);this.m11=b;this.m13=-a;this.m31=a;this.m33=b;return this},"~N");j(c$,"equals",function(a){return!q(a,JU.M4)?!1:this.m00==a.m00&&this.m01==a.m01&&this.m02==a.m02&&this.m03==a.m03&&this.m10==a.m10&&this.m11==
a.m11&&this.m12==a.m12&&this.m13==a.m13&&this.m20==a.m20&&this.m21==a.m21&&this.m22==a.m22&&this.m23==a.m23&&this.m30==a.m30&&this.m31==a.m31&&this.m32==a.m32&&this.m33==a.m33},"~O");j(c$,"hashCode",function(){return JU.T3.floatToIntBits0(this.m00)^JU.T3.floatToIntBits0(this.m01)^JU.T3.floatToIntBits0(this.m02)^JU.T3.floatToIntBits0(this.m03)^JU.T3.floatToIntBits0(this.m10)^JU.T3.floatToIntBits0(this.m11)^JU.T3.floatToIntBits0(this.m12)^JU.T3.floatToIntBits0(this.m13)^JU.T3.floatToIntBits0(this.m20)^
JU.T3.floatToIntBits0(this.m21)^JU.T3.floatToIntBits0(this.m22)^JU.T3.floatToIntBits0(this.m23)^JU.T3.floatToIntBits0(this.m30)^JU.T3.floatToIntBits0(this.m31)^JU.T3.floatToIntBits0(this.m32)^JU.T3.floatToIntBits0(this.m33)});j(c$,"toString",function(){return"[\n  ["+this.m00+"\t"+this.m01+"\t"+this.m02+"\t"+this.m03+"]\n  ["+this.m10+"\t"+this.m11+"\t"+this.m12+"\t"+this.m13+"]\n  ["+this.m20+"\t"+this.m21+"\t"+this.m22+"\t"+this.m23+"]\n  ["+this.m30+"\t"+this.m31+"\t"+this.m32+"\t"+this.m33+"] ]"})}),
u("JU"),v(["java.io.OutputStream"],"JU.OC",["java.io.BufferedWriter","$.ByteArrayOutputStream","$.OutputStreamWriter","JU.Base64","$.SB"],function(){c$=s(function(){this.bw=this.fileName=this.bytePoster=null;this.isLocalFile=!1;this.byteCount=0;this.closed=this.isCanceled=!1;this.type=this.sb=this.os=null;this.$isBase64=!1;this.bytes=this.os0=null;p(this,arguments)},JU,"OC",java.io.OutputStream);c(c$,"setParams",function(a,b,d,f){this.bytePoster=a;this.fileName=b;if(this.$isBase64=";base64,".equals(b))b=
null,this.os0=f,f=null;this.os=f;this.isLocalFile=null!=b&&!JU.OC.isRemote(b);d&&(!this.$isBase64&&null!=f)&&(this.bw=new java.io.BufferedWriter(new java.io.OutputStreamWriter(f)));return this},"javajs.api.BytePoster,~S,~B,java.io.OutputStream");c(c$,"setBytes",function(a){this.bytes=a;return this},"~A");c(c$,"getFileName",function(){return this.fileName});c(c$,"getName",function(){return null==this.fileName?null:this.fileName.substring(this.fileName.lastIndexOf("/")+1)});c(c$,"getByteCount",function(){return this.byteCount});
c(c$,"setType",function(a){this.type=a},"~S");c(c$,"getType",function(){return this.type});c(c$,"append",function(a){try{if(null!=this.bw)this.bw.write(a);else if(null==this.os)null==this.sb&&(this.sb=new JU.SB),this.sb.append(a);else{var b=a.getBytes();this.os.write(b,0,b.length);this.byteCount+=b.length;return this}}catch(d){if(!B(d,java.io.IOException))throw d;}this.byteCount+=a.length;return this},"~S");c(c$,"reset",function(){this.sb=null;this.initOS()});c(c$,"initOS",function(){if(null!=this.sb){var a=
this.sb.toString();this.reset();this.append(a)}else{try{this.os=null,null==this.os&&(this.os=new java.io.ByteArrayOutputStream),null!=this.bw&&(this.bw.close(),this.bw=new java.io.BufferedWriter(new java.io.OutputStreamWriter(this.os)))}catch(b){if(B(b,Exception))System.out.println(b.toString());else throw b;}this.byteCount=0}});j(c$,"write",function(a,b,d){null==this.os&&this.initOS();try{this.os.write(a,b,d)}catch(f){if(!B(f,java.io.IOException))throw f;}this.byteCount+=d},"~A,~N,~N");j(c$,"writeByteAsInt",
function(a){null==this.os&&this.initOS();this.os.writeByteAsInt(a);this.byteCount++},"~N");c(c$,"cancel",function(){this.isCanceled=!0;this.closeChannel()});c(c$,"closeChannel",function(){if(this.closed)return null;try{null!=this.bw?(this.bw.flush(),this.bw.close()):null!=this.os&&(this.os.flush(),this.os.close()),null!=this.os0&&this.isCanceled&&(this.os0.flush(),this.os0.close())}catch(a){if(!B(a,Exception))throw a;}if(this.isCanceled)return this.closed=!0,null;if(null==this.fileName){if(this.$isBase64){var b=
this.getBase64();null!=this.os0&&(this.os=this.os0,this.append(b));this.sb=new JU.SB;this.sb.append(b);this.$isBase64=!1;return this.closeChannel()}return null==this.sb?null:this.sb.toString()}this.closed=!0;b=null==this.sb?this.toByteArray():this.sb.toString();"function"==typeof this.fileName?this.fileName(b):Jmol._doAjax(this.fileName,null,b);return null});c(c$,"isBase64",function(){return this.$isBase64});c(c$,"getBase64",function(){return JU.Base64.getBase64(this.toByteArray()).toString()});c(c$,
"toByteArray",function(){return null!=this.bytes?this.bytes:q(this.os,java.io.ByteArrayOutputStream)?this.os.toByteArray():null});c(c$,"close",function(){this.closeChannel()});j(c$,"toString",function(){if(null!=this.bw)try{this.bw.flush()}catch(a){if(!B(a,java.io.IOException))throw a;}return null!=this.sb?this.closeChannel():this.byteCount+" bytes"});c(c$,"postByteArray",function(){var a=null==this.sb?this.toByteArray():this.sb.toString().getBytes();return this.bytePoster.postByteArray(this.fileName,
a)});c$.isRemote=c(c$,"isRemote",function(a){if(null==a)return!1;a=JU.OC.urlTypeIndex(a);return 0<=a&&4!=a},"~S");c$.isLocal=c(c$,"isLocal",function(a){if(null==a)return!1;a=JU.OC.urlTypeIndex(a);return 0>a||4==a},"~S");c$.urlTypeIndex=c(c$,"urlTypeIndex",function(a){if(null==a)return-2;for(var b=0;b<JU.OC.urlPrefixes.length;++b)if(a.startsWith(JU.OC.urlPrefixes[b]))return b;return-1},"~S");C(c$,"urlPrefixes",["http:","https:","sftp:","ftp:","file:"],"URL_LOCAL",4)}),u("JU"),v(["JU.T3"],"JU.P3",null,
function(){c$=A(JU,"P3",JU.T3);c$.newP=c(c$,"newP",function(a){var b=new JU.P3;b.x=a.x;b.y=a.y;b.z=a.z;return b},"JU.T3");c$.getUnlikely=c(c$,"getUnlikely",function(){return null==JU.P3.unlikely?JU.P3.unlikely=JU.P3.new3(3.141592653589793,2.718281828459045,8.539734222673566):JU.P3.unlikely});c$.new3=c(c$,"new3",function(a,b,d){var f=new JU.P3;f.x=a;f.y=b;f.z=d;return f},"~N,~N,~N");C(c$,"unlikely",null)}),u("JU"),v(["JU.T3i"],"JU.P3i",null,function(){c$=A(JU,"P3i",JU.T3i);c$.new3=c(c$,"new3",function(a,
b,d){var f=new JU.P3i;f.x=a;f.y=b;f.z=d;return f},"~N,~N,~N")}),u("JU"),v(["JU.T4"],"JU.P4",null,function(){c$=A(JU,"P4",JU.T4);c$.new4=c(c$,"new4",function(a,b,d,f){var c=new JU.P4;c.set4(a,b,d,f);return c},"~N,~N,~N,~N");c$.newPt=c(c$,"newPt",function(a){var b=new JU.P4;b.set4(a.x,a.y,a.z,a.w);return b},"JU.P4");c(c$,"distance4",function(a){var b=this.x-a.x,d=this.y-a.y,f=this.z-a.z;a=this.w-a.w;return Math.sqrt(b*b+d*d+f*f+a*a)},"JU.P4")}),u("JU"),v(null,"JU.PT","java.lang.Boolean $.Double $.Float $.Number java.util.Map javajs.api.JSONEncodable JU.AU $.DF $.Lst $.M34 $.M4 $.SB".split(" "),
function(){c$=A(JU,"PT");c$.parseInt=c(c$,"parseInt",function(a){return JU.PT.parseIntNext(a,[0])},"~S");c$.parseIntNext=c(c$,"parseIntNext",function(a,b){var d=a.length;return 0>b[0]||b[0]>=d?-2147483648:JU.PT.parseIntChecked(a,d,b)},"~S,~A");c$.parseIntChecked=c(c$,"parseIntChecked",function(a,b,d){var f=!1,c=0,e=d[0];if(0>e)return-2147483648;for(var h;e<b&&JU.PT.isWhiteSpace(a,e);)++e;var l=!1;e<b&&45==a.charCodeAt(e)&&(l=!0,++e);for(;e<b&&48<=(h=a.charCodeAt(e))&&57>=h;)c=10*c+(h-48),f=!0,++e;
f?l&&(c=-c):c=-2147483648;d[0]=e;return c},"~S,~N,~A");c$.isWhiteSpace=c(c$,"isWhiteSpace",function(a,b){var d;return 0<=b&&(" "==(d=a.charAt(b))||"\t"==d||"\n"==d)},"~S,~N");c$.parseFloatChecked=c(c$,"parseFloatChecked",function(a,b,d,f){var c=!1,e=d[0];if(f&&a.indexOf("\n")!=a.lastIndexOf("\n"))return NaN;for(;e<b&&JU.PT.isWhiteSpace(a,e);)++e;var h=!1;e<b&&"-"==a.charAt(e)&&(++e,h=!0);for(var l=0,k=0,j=0;e<b&&48<=(l=a.charCodeAt(e))&&57>=l;)k=10*k+1*(l-48),++e,c=!0;var m=!1,r=0,y=0==k?-1:0;if(46==
l)for(m=!0;++e<b&&48<=(l=a.charCodeAt(e))&&57>=l;){c=!0;if(0>y){if(48==l){y--;continue}y=-y}r<JU.PT.decimalScale.length&&(j=10*j+1*(l-48),r++)}c?0<j?(c=j*JU.PT.decimalScale[r-1],c=1<y?y-2<JU.PT.decimalScale.length?c*JU.PT.decimalScale[y-2]:c*Math.pow(10,1-y):c+k):c=k:c=NaN;k=!1;if(e<b&&(69==l||101==l||68==l)){k=!0;if(++e>=b)return NaN;l=a.charCodeAt(e);if(43==l&&++e>=b)return NaN;d[0]=e;e=JU.PT.parseIntChecked(a,b,d);if(-2147483648==e)return NaN;0<e&&e<=JU.PT.tensScale.length?c*=JU.PT.tensScale[e-
1]:0>e&&-e<=JU.PT.decimalScale.length?c*=JU.PT.decimalScale[-e-1]:0!=e&&(c*=Math.pow(10,e))}else d[0]=e;h&&(c=-c);Infinity==c&&(c=3.4028235E38);return!f||(!k||m)&&JU.PT.checkTrailingText(a,d[0],b)?c:NaN},"~S,~N,~A,~B");c$.checkTrailingText=c(c$,"checkTrailingText",function(a,b,d){for(var f;b<d&&(JU.PT.isWhitespace(f=a.charAt(b))||";"==f);)++b;return b==d},"~S,~N,~N");c$.parseFloatArray=c(c$,"parseFloatArray",function(a){return JU.PT.parseFloatArrayNext(a,E(1,0),null,null,null)},"~S");c$.parseFloatArrayInfested=
c(c$,"parseFloatArrayInfested",function(a,b){for(var d=b.length,f=a.length,c=0,e=0,h=0;0<=h&&h<d&&c<f;h++){for(var l;Float.isNaN(l=JU.PT.parseFloat(a[c++]))&&c<f;);Float.isNaN(l)||(b[e=h]=l);if(c==f)break}return e+1},"~A,~A");c$.parseFloatArrayNext=c(c$,"parseFloatArrayNext",function(a,b,d,f,c){var e=0,h=b[0];0<=h&&(null!=f&&(e=a.indexOf(f,h),0<=e&&(b[0]=e+f.length)),a=a.substring(b[0]),h=null==c?-1:a.indexOf(c),0>h?h=a.length:a=a.substring(0,h),b[0]+=h+1,a=JU.PT.getTokens(a),null==d&&(d=M(a.length,
0)),e=JU.PT.parseFloatArrayInfested(a,d));if(null==d)return M(0,0);for(a=e;a<d.length;a++)d[a]=NaN;return d},"~S,~A,~A,~S,~S");c$.parseFloatRange=c(c$,"parseFloatRange",function(a,b,d){var f=a.length;b>f&&(b=f);return 0>d[0]||d[0]>=b?NaN:JU.PT.parseFloatChecked(a,b,d,!1)},"~S,~N,~A");c$.parseFloatNext=c(c$,"parseFloatNext",function(a,b){var d=null==a?-1:a.length;return 0>b[0]||b[0]>=d?NaN:JU.PT.parseFloatChecked(a,d,b,!1)},"~S,~A");c$.parseFloatStrict=c(c$,"parseFloatStrict",function(a){var b=a.length;
return 0==b?NaN:JU.PT.parseFloatChecked(a,b,[0],!0)},"~S");c$.parseFloat=c(c$,"parseFloat",function(a){return JU.PT.parseFloatNext(a,[0])},"~S");c$.parseIntRadix=c(c$,"parseIntRadix",function(a,b){return Integer.parseIntRadix(a,b)},"~S,~N");c$.getTokens=c(c$,"getTokens",function(a){return JU.PT.getTokensAt(a,0)},"~S");c$.parseToken=c(c$,"parseToken",function(a){return JU.PT.parseTokenNext(a,[0])},"~S");c$.parseTrimmed=c(c$,"parseTrimmed",function(a){return JU.PT.parseTrimmedRange(a,0,a.length)},"~S");
c$.parseTrimmedAt=c(c$,"parseTrimmedAt",function(a,b){return JU.PT.parseTrimmedRange(a,b,a.length)},"~S,~N");c$.parseTrimmedRange=c(c$,"parseTrimmedRange",function(a,b,d){var f=a.length;d<f&&(f=d);return f<b?"":JU.PT.parseTrimmedChecked(a,b,f)},"~S,~N,~N");c$.getTokensAt=c(c$,"getTokensAt",function(a,b){if(null==a)return null;var d=a.length;if(0>b||b>d)return null;var f=JU.PT.countTokens(a,b),c=Array(f),e=E(1,0);e[0]=b;for(var h=0;h<f;++h)c[h]=JU.PT.parseTokenChecked(a,d,e);return c},"~S,~N");c$.countTokens=
c(c$,"countTokens",function(a,b){var d=0;if(null!=a)for(var f=a.length;;){for(;b<f&&JU.PT.isWhiteSpace(a,b);)++b;if(b==f)break;++d;do++b;while(b<f&&!JU.PT.isWhiteSpace(a,b))}return d},"~S,~N");c$.parseTokenNext=c(c$,"parseTokenNext",function(a,b){var d=a.length;return 0>b[0]||b[0]>=d?null:JU.PT.parseTokenChecked(a,d,b)},"~S,~A");c$.parseTokenRange=c(c$,"parseTokenRange",function(a,b,d){var f=a.length;b>f&&(b=f);return 0>d[0]||d[0]>=b?null:JU.PT.parseTokenChecked(a,b,d)},"~S,~N,~A");c$.parseTokenChecked=
c(c$,"parseTokenChecked",function(a,b,d){for(var f=d[0];f<b&&JU.PT.isWhiteSpace(a,f);)++f;for(var c=f;f<b&&!JU.PT.isWhiteSpace(a,f);)++f;d[0]=f;return c==f?null:a.substring(c,f)},"~S,~N,~A");c$.parseTrimmedChecked=c(c$,"parseTrimmedChecked",function(a,b,d){for(;b<d&&JU.PT.isWhiteSpace(a,b);)++b;for(d-=1;d>=b&&JU.PT.isWhiteSpace(a,d);)--d;return d<b?"":a.substring(b,d+1)},"~S,~N,~N");c$.dVal=c(c$,"dVal",function(a){if(null==a)throw new NumberFormatException("null");var b=parseFloat(a);if(isNaN(b))throw new NumberFormatException("Not a Number : "+
a);return b},"~S");c$.fVal=c(c$,"fVal",function(a){return this.dVal(a)},"~S");c$.parseIntRange=c(c$,"parseIntRange",function(a,b,d){var f=a.length;b>f&&(b=f);return 0>d[0]||d[0]>=b?-2147483648:JU.PT.parseIntChecked(a,b,d)},"~S,~N,~A");c$.parseFloatArrayData=c(c$,"parseFloatArrayData",function(a,b){JU.PT.parseFloatArrayDataN(a,b,b.length)},"~A,~A");c$.parseFloatArrayDataN=c(c$,"parseFloatArrayDataN",function(a,b,d){for(;0<=--d;)b[d]=d>=a.length?NaN:JU.PT.parseFloat(a[d])},"~A,~A,~N");c$.split=c(c$,
"split",function(a,b){if(0==a.length)return[];var d=1,f=a.indexOf(b),c,e=b.length;if(0>f||0==e)return c=Array(1),c[0]=a,c;for(var h=a.length-e;0<=f&&f<h;d++)f=a.indexOf(b,f+e);c=Array(d);for(var l=f=0,k=0;0<=(l=a.indexOf(b,f))&&k+1<d;)c[k++]=a.substring(f,l),f=l+e;a.indexOf(b,h)!=h&&(h+=e);c[k]=a.substring(f,h);return c},"~S,~S");c$.getQuotedStringAt=c(c$,"getQuotedStringAt",function(a,b){return JU.PT.getQuotedStringNext(a,[b])},"~S,~N");c$.getQuotedStringNext=c(c$,"getQuotedStringNext",function(a,
b){var d=b[0];if(0>d||0>(d=a.indexOf('"',d)))return"";for(var f=d+1,c=a.length;++d<c&&'"'!=a.charAt(d);)"\\"==a.charAt(d)&&d++;b[0]=d+1;return a.substring(f,d)},"~S,~A");c$.getCSVString=c(c$,"getCSVString",function(a,b){var d=b[1];if(0>d||0>(d=a.indexOf('"',d)))return null;for(var f=b[0]=d,c=a.length,e=!1,h=!1;++d<c&&('"'!=a.charAt(d)||(e=d+1<c&&'"'==a.charAt(d+1)));)e&&(e=!1,h=!0,d++);if(d>=c)return b[1]=-1,null;b[1]=d+1;d=a.substring(f+1,d);return h?JU.PT.rep(JU.PT.rep(d,'""',"\x00"),"\x00",'"'):
d},"~S,~A");c$.isOneOf=c(c$,"isOneOf",function(a,b){if(0==b.length)return!1;";"!=b.charAt(0)&&(b=";"+b+";");return 0>a.indexOf(";")&&0<=b.indexOf(";"+a+";")},"~S,~S");c$.getQuotedAttribute=c(c$,"getQuotedAttribute",function(a,b){var d=a.indexOf(b+"=");return 0>d?null:JU.PT.getQuotedStringAt(a,d)},"~S,~S");c$.approx=c(c$,"approx",function(a,b){return Math.round(a*b)/b},"~N,~N");c$.rep=c(c$,"rep",function(a,b,d){if(null==a||0==b.length||0>a.indexOf(b))return a;var f=0<=d.indexOf(b);do a=a.$replace(b,
d);while(!f&&0<=a.indexOf(b));return a},"~S,~S,~S");c$.formatF=c(c$,"formatF",function(a,b,d,f,c){return JU.PT.formatS(JU.DF.formatDecimal(a,d),b,0,f,c)},"~N,~N,~N,~B,~B");c$.formatD=c(c$,"formatD",function(a,b,d,f,c){return JU.PT.formatS(JU.DF.formatDecimal(a,-1-d),b,0,f,c)},"~N,~N,~N,~B,~B,~B");c$.formatS=c(c$,"formatS",function(a,b,d,f,c){if(null==a)return"";var e=a.length;2147483647!=d&&0<d&&d<e?a=a.substring(0,d):0>d&&0<=e+d&&(a=a.substring(e+d+1));d=b-a.length;if(0>=d)return a;b=c&&!f&&"-"==
a.charAt(0);c=c?"0":" ";var h=b?"-":c,e=new JU.SB;f&&e.append(a);for(e.appendC(h);0<--d;)e.appendC(c);f||e.append(b?c+a.substring(1):a);return e.toString()},"~S,~N,~N,~B,~B");c$.replaceWithCharacter=c(c$,"replaceWithCharacter",function(a,b,d){if(null==a)return null;for(var f=b.length;0<=--f;)a=a.$replace(b.charAt(f),d);return a},"~S,~S,~S");c$.replaceAllCharacters=c(c$,"replaceAllCharacters",function(a,b,d){for(var f=b.length;0<=--f;){var c=b.substring(f,f+1);a=JU.PT.rep(a,c,d)}return a},"~S,~S,~S");
c$.trim=c(c$,"trim",function(a,b){if(0==b.length)return a.trim();for(var d=a.length,f=0;f<d&&0<=b.indexOf(a.charAt(f));)f++;for(d=a.length-1;d>f&&0<=b.indexOf(a.charAt(d));)d--;return a.substring(f,d+1)},"~S,~S");c$.trimQuotes=c(c$,"trimQuotes",function(a){return null!=a&&1<a.length&&a.startsWith('"')&&a.endsWith('"')?a.substring(1,a.length-1):a},"~S");c$.isNonStringPrimitive=c(c$,"isNonStringPrimitive",function(a){return q(a,Number)||q(a,Boolean)},"~O");c$.arrayGet=c(c$,"arrayGet",function(a,b){return a[b]},
"~O,~N");c$.toJSON=c(c$,"toJSON",function(a,b){if(null==b)return JU.PT.packageJSON(a,null);if(JU.PT.isNonStringPrimitive(b))return JU.PT.packageJSON(a,b.toString());for(var d=null,f=null;;){if(q(b,String)){d=b;"undefined"==typeof d&&(d="null");0!=d.indexOf('{"')&&(d=JU.PT.rep(d,'"','\\"'),d=JU.PT.rep(d,"\n","\\n"),d='"'+d+'"');break}if(q(b,javajs.api.JSONEncodable)){if(null==(d=b.toJSON()))d="null";break}f=new JU.SB;if(q(b,java.util.Map)){f.append("{ ");for(var c="",e,h=b.keySet().iterator();h.hasNext()&&
((e=h.next())||1);)f.append(c).append(JU.PT.packageJSON(e,JU.PT.toJSON(null,b.get(e)))),c=",";f.append(" }");break}if(q(b,JU.Lst)){f.append("[ ");e=b.size();for(c=0;c<e;c++)0<c&&f.appendC(","),f.append(JU.PT.toJSON(null,b.get(c)));f.append(" ]");break}if(q(b,JU.M34)){e=q(b,JU.M4)?4:3;var h=M(e,0),l=b;f.appendC("[");for(c=0;c<e;c++)0<c&&f.appendC(","),l.getRow(c,h),f.append(JU.PT.toJSON(null,h));f.appendC("]");break}d=JU.PT.nonArrayString(b);if(null==d){f.append("[");e=JU.AU.getLength(b);for(c=0;c<
e;c++)0<c&&f.appendC(","),f.append(JU.PT.toJSON(null,JU.PT.arrayGet(b,c)));f.append("]");break}b=b.toString()}return JU.PT.packageJSON(a,null==d?f.toString():d)},"~S,~O");c$.nonArrayString=c(c$,"nonArrayString",function(a){a=a.toString();return a.startsWith("[object")&&a.endsWith("Array]")?null:a},"~O");c$.byteArrayToJSON=c(c$,"byteArrayToJSON",function(a){var b=new JU.SB;b.append("[");for(var d=a.length,f=0;f<d;f++)0<f&&b.appendC(","),b.appendI(a[f]&255);b.append("]");return b.toString()},"~A");
c$.packageJSON=c(c$,"packageJSON",function(a,b){return null==a?b:'"'+a+'": '+b},"~S,~S");c$.isAS=c(c$,"isAS",function(a){return pa(a)},"~O");c$.isASS=c(c$,"isASS",function(a){return qa(a)},"~O");c$.isAP=c(c$,"isAP",function(a){return ra(a)},"~O");c$.isAF=c(c$,"isAF",function(a){return ha(a)},"~O");c$.isAFloat=c(c$,"isAFloat",function(a){return sa(a)},"~O");c$.isAD=c(c$,"isAD",function(a){return ha(a)},"~O");c$.isADD=c(c$,"isADD",function(a){return ja(a)},"~O");c$.isAB=c(c$,"isAB",function(a){return ia(a)},
"~O");c$.isAI=c(c$,"isAI",function(a){return ia(a)},"~O");c$.isAII=c(c$,"isAII",function(a){return ta(a)},"~O");c$.isAFF=c(c$,"isAFF",function(a){return ja(a)},"~O");c$.isAFFF=c(c$,"isAFFF",function(a){return ua(a)},"~O");c$.escapeUrl=c(c$,"escapeUrl",function(a){a=JU.PT.rep(a,"\n","");a=JU.PT.rep(a,"%","%25");a=JU.PT.rep(a,"#","%23");a=JU.PT.rep(a,"[","%5B");a=JU.PT.rep(a,"]","%5D");return a=JU.PT.rep(a," ","%20")},"~S");c$.esc=c(c$,"esc",function(a){if(null==a||0==a.length)return'""';for(var b=
!1,d=0;10>d;d+=2)if(0<=a.indexOf('\\\\\tt\rr\nn""'.charAt(d))){b=!0;break}if(b)for(;10>d;){for(var b=-1,f='\\\\\tt\rr\nn""'.charAt(d++),c='\\\\\tt\rr\nn""'.charAt(d++),e=new JU.SB,h=0;0<=(b=a.indexOf(f,b+1));)e.append(a.substring(h,b)).appendC("\\").appendC(c),h=b+1;e.append(a.substring(h,a.length));a=e.toString()}return'"'+JU.PT.escUnicode(a)+'"'},"~S");c$.escUnicode=c(c$,"escUnicode",function(a){for(var b=a.length;0<=--b;)if(127<a.charCodeAt(b)){var d="0000"+Integer.toHexString(a.charCodeAt(b));
a=a.substring(0,b)+"\\u"+d.substring(d.length-4)+a.substring(b+1)}return a},"~S");c$.escF=c(c$,"escF",function(a){a=""+a;0>a.indexOf(".")&&0>a.indexOf("e")&&(a+=".0");return a},"~N");c$.join=c(c$,"join",function(a,b,d){if(a.length<d)return null;var f=new JU.SB;for(f.append(a[d++]);d<a.length;d++)f.appendC(b).append(a[d]);return f.toString()},"~A,~S,~N");c$.isLike=c(c$,"isLike",function(a,b){var d=a.equals(b);if(d)return!0;var f=b.startsWith("*"),c=b.endsWith("*");return!f&&!c?d:f&&c?1==b.length||
a.contains(b.substring(1,b.length-1)):f?a.endsWith(b.substring(1)):a.startsWith(b.substring(0,b.length-1))},"~S,~S");c$.getMapValueNoCase=c(c$,"getMapValueNoCase",function(a,b){if("this".equals(b))return a;var d=a.get(b);if(null==d)for(var f,c=a.entrySet().iterator();c.hasNext()&&((f=c.next())||1);)if(f.getKey().equalsIgnoreCase(b))return f.getValue();return d},"java.util.Map,~S");c$.getMapSubset=c(c$,"getMapSubset",function(a,b,d){var f=a.get(b);if(null!=f)d.put(b,f);else{var c;for(a=a.entrySet().iterator();a.hasNext()&&
((c=a.next())||1);)f=c.getKey(),JU.PT.isLike(f,b)&&d.put(f,c.getValue())}},"java.util.Map,~S,java.util.Map");c$.clean=c(c$,"clean",function(a){return JU.PT.rep(JU.PT.replaceAllCharacters(a," \t\n\r"," "),"  "," ").trim()},"~S");c$.fdup=c(c$,"fdup",function(a,b,d){for(var f,c=0,e=b;1<=--e;)if(!JU.PT.isDigit(f=a.charAt(e)))switch(f){case ".":if(0!=c++)return a;continue;case "-":if(1!=e&&"."!=a.charAt(e-1))return a;continue;default:return a}f=a.substring(0,b+1);c=new JU.SB;for(e=0;e<d;e++)c.append(f);
c.append(a.substring(b+1));return c.toString()},"~S,~N,~N");c$.formatString=c(c$,"formatString",function(a,b,d,f,c,e){if(null==a)return null;if("".equals(a))return"";var h=b.length;if(0>a.indexOf("%")||0==h||0>a.indexOf(b))return a;var l="",k,j,m;for(k=0;0<=(j=a.indexOf("%",k))&&0<=(m=a.indexOf(b,j+1));)if(k!=j&&(l+=a.substring(k,j)),k=j+1,m>j+6)l+="%";else try{var r=!1;"-"==a.charAt(k)&&(r=!0,++k);var y=!1;"0"==a.charAt(k)&&(y=!0,++k);for(var w,F=0;"0"<=(w=a.charAt(k))&&"9">=w;)F=10*F+(w.charCodeAt(0)-
48),++k;var G=2147483647,q=!1;if("."==a.charAt(k)){++k;if("-"==(w=a.charAt(k)))q=!0,++k;if("0"<=(w=a.charAt(k))&&"9">=w)G=w.charCodeAt(0)-48,++k;q&&(G=-G-(null==d?1:0))}if(a.substring(k,k+h).equals(b)){if(k+=h,Float.isNaN(f)?null!=d?l+=JU.PT.formatS(d,F,G,r,y):Double.isNaN(c)||(l+=JU.PT.formatD(c,F,G,r,y,!0)):l+=JU.PT.formatF(f,F,G,r,y),e)break}else k=j+1,l+="%"}catch(p){if(B(p,IndexOutOfBoundsException)){k=j;break}else throw p;}return l+=a.substring(k)},"~S,~S,~S,~N,~N,~B");c$.formatStringS=c(c$,
"formatStringS",function(a,b,d){return JU.PT.formatString(a,b,d,NaN,NaN,!1)},"~S,~S,~S");c$.formatStringF=c(c$,"formatStringF",function(a,b,d){return JU.PT.formatString(a,b,null,d,NaN,!1)},"~S,~S,~N");c$.formatStringI=c(c$,"formatStringI",function(a,b,d){return JU.PT.formatString(a,b,""+d,NaN,NaN,!1)},"~S,~S,~N");c$.sprintf=c(c$,"sprintf",function(a,b,d){if(null==d)return a;var f=b.length;if(f==d.length)try{for(var c=0;c<f;c++)if(null!=d[c])switch(b.charAt(c)){case "s":a=JU.PT.formatString(a,"s",
d[c],NaN,NaN,!0);break;case "f":a=JU.PT.formatString(a,"f",null,d[c].floatValue(),NaN,!0);break;case "i":a=JU.PT.formatString(a,"d",""+d[c],NaN,NaN,!0);a=JU.PT.formatString(a,"i",""+d[c],NaN,NaN,!0);break;case "d":a=JU.PT.formatString(a,"e",null,NaN,d[c].doubleValue(),!0);break;case "p":var e=d[c];a=JU.PT.formatString(a,"p",null,e.x,NaN,!0);a=JU.PT.formatString(a,"p",null,e.y,NaN,!0);a=JU.PT.formatString(a,"p",null,e.z,NaN,!0);break;case "q":var h=d[c];a=JU.PT.formatString(a,"q",null,h.x,NaN,!0);
a=JU.PT.formatString(a,"q",null,h.y,NaN,!0);a=JU.PT.formatString(a,"q",null,h.z,NaN,!0);a=JU.PT.formatString(a,"q",null,h.w,NaN,!0);break;case "S":for(var l=d[c],k=0;k<l.length;k++)a=JU.PT.formatString(a,"s",l[k],NaN,NaN,!0);break;case "F":for(var j=d[c],k=0;k<j.length;k++)a=JU.PT.formatString(a,"f",null,j[k],NaN,!0);break;case "I":for(var m=d[c],k=0;k<m.length;k++)a=JU.PT.formatString(a,"d",""+m[k],NaN,NaN,!0);for(k=0;k<m.length;k++)a=JU.PT.formatString(a,"i",""+m[k],NaN,NaN,!0);break;case "D":for(var r=
d[c],k=0;k<r.length;k++)a=JU.PT.formatString(a,"e",null,NaN,r[k],!0)}return JU.PT.rep(a,"%%","%")}catch(y){if(!B(y,Exception))throw y;}System.out.println("TextFormat.sprintf error "+b+" "+a);return JU.PT.rep(a,"%","?")},"~S,~S,~A");c$.formatCheck=c(c$,"formatCheck",function(a){if(null==a||0>a.indexOf("p")&&0>a.indexOf("q"))return a;a=JU.PT.rep(a,"%%","\u0001");a=JU.PT.rep(a,"%p","%6.2p");a=JU.PT.rep(a,"%q","%6.2q");a=JU.PT.split(a,"%");var b=new JU.SB;b.append(a[0]);for(var d=1;d<a.length;d++){var f=
"%"+a[d],c;if(3<=f.length){if(0<=(c=f.indexOf("p")))f=JU.PT.fdup(f,c,3);if(0<=(c=f.indexOf("q")))f=JU.PT.fdup(f,c,4)}b.append(f)}return b.toString().$replace("\u0001","%")},"~S");c$.leftJustify=c(c$,"leftJustify",function(a,b,d){a.append(d);d=b.length-d.length;0<d&&a.append(b.substring(0,d))},"JU.SB,~S,~S");c$.rightJustify=c(c$,"rightJustify",function(a,b,d){var f=b.length-d.length;0<f&&a.append(b.substring(0,f));a.append(d)},"JU.SB,~S,~S");c$.safeTruncate=c(c$,"safeTruncate",function(a,b){-0.001<
a&&0.001>a&&(a=0);return(a+"         ").substring(0,b)},"~N,~N");c$.isWild=c(c$,"isWild",function(a){return null!=a&&(0<=a.indexOf("*")||0<=a.indexOf("?"))},"~S");c$.isMatch=c(c$,"isMatch",function(a,b,d,f){if(a.equals(b))return!0;var c=b.length;if(0==c)return!1;var e=d&&f?"*"==b.charAt(0):!1;if(1==c&&e)return!0;var h=d&&b.endsWith("*");if(!(0<=b.indexOf("?"))){if(e)return h?3>c||0<=a.indexOf(b.substring(1,c-1)):a.endsWith(b.substring(1));if(h)return a.startsWith(b.substring(0,c-1))}for(var l=a.length,
k="????",j=4;j<l;)k+=k,j+=4;d&&(e&&(b=k+b.substring(1),c+=j-1),h&&(b=b.substring(0,c-1)+k,c+=j-1));if(c<l)return!1;for(d=0;c>l;){if(f&&"?"==b.charAt(d))++d;else if("?"!=b.charAt(d+c-1))return!1;--c}for(f=l;0<=--f;)if(c=b.charAt(d+f),"?"!=c&&(l=a.charAt(f),c!=l&&("\u0001"!=c||"?"!=l)))return!1;return!0},"~S,~S,~B,~B");c$.replaceQuotedStrings=c(c$,"replaceQuotedStrings",function(a,b,d){for(var f=b.size(),c=0;c<f;c++){var e=b.get(c),h=d.get(c);h.equals(e)||(a=JU.PT.rep(a,'"'+e+'"','"'+h+'"'))}return a},
"~S,JU.Lst,JU.Lst");c$.replaceStrings=c(c$,"replaceStrings",function(a,b,d){for(var f=b.size(),c=0;c<f;c++){var e=b.get(c),h=d.get(c);h.equals(e)||(a=JU.PT.rep(a,e,h))}return a},"~S,JU.Lst,JU.Lst");c$.isDigit=c(c$,"isDigit",function(a){a=a.charCodeAt(0);return 48<=a&&57>=a},"~S");c$.isUpperCase=c(c$,"isUpperCase",function(a){a=a.charCodeAt(0);return 65<=a&&90>=a},"~S");c$.isLowerCase=c(c$,"isLowerCase",function(a){a=a.charCodeAt(0);return 97<=a&&122>=a},"~S");c$.isLetter=c(c$,"isLetter",function(a){a=
a.charCodeAt(0);return 65<=a&&90>=a||97<=a&&122>=a},"~S");c$.isLetterOrDigit=c(c$,"isLetterOrDigit",function(a){a=a.charCodeAt(0);return 65<=a&&90>=a||97<=a&&122>=a||48<=a&&57>=a},"~S");c$.isWhitespace=c(c$,"isWhitespace",function(a){a=a.charCodeAt(0);return 28<=a&&32>=a||9<=a&&13>=a},"~S");c$.fixPtFloats=c(c$,"fixPtFloats",function(a,b){a.x=Math.round(a.x*b)/b;a.y=Math.round(a.y*b)/b;a.z=Math.round(a.z*b)/b},"JU.T3,~N");c$.fixDouble=c(c$,"fixDouble",function(a,b){return Math.round(a*b)/b},"~N,~N");
c$.parseFloatFraction=c(c$,"parseFloatFraction",function(a){var b=a.indexOf("/");return 0>b?JU.PT.parseFloat(a):JU.PT.parseFloat(a.substring(0,b))/JU.PT.parseFloat(a.substring(b+1))},"~S");C(c$,"tensScale",[10,100,1E3,1E4,1E5,1E6],"decimalScale",[0.1,0.01,0.001,1E-4,1E-5,1E-6,1E-7,1E-8,1E-9],"FLOAT_MIN_SAFE",2E-45,"escapable",'\\\\\tt\rr\nn""',"FRACTIONAL_PRECISION",1E5,"CARTESIAN_PRECISION",1E4)}),u("JU"),c$=s(function(){this.s=this.sb=null;p(this,arguments)},JU,"SB"),t(c$,function(){this.s=""}),
c$.newN=c(c$,"newN",function(){return new JU.SB},"~N"),c$.newS=c(c$,"newS",function(a){var b=new JU.SB;b.s=a;return b},"~S"),c(c$,"append",function(a){this.s+=a;return this},"~S"),c(c$,"appendC",function(a){this.s+=a;return this},"~S"),c(c$,"appendI",function(a){this.s+=a;return this},"~N"),c(c$,"appendB",function(a){this.s+=a;return this},"~B"),c(c$,"appendF",function(a){a=""+a;0>a.indexOf(".")&&0>a.indexOf("e")&&(a+=".0");this.s+=a;return this},"~N"),c(c$,"appendD",function(a){a=""+a;0>a.indexOf(".")&&
0>a.indexOf("e")&&(a+=".0");this.s+=a;return this},"~N"),c(c$,"appendSB",function(a){this.s+=a.s;return this},"JU.SB"),c(c$,"appendO",function(a){null!=a&&(this.s+=a.toString());return this},"~O"),c(c$,"appendCB",function(a,b,d){for(;0<=--d;)this.s+=a[b++]},"~A,~N,~N"),j(c$,"toString",function(){return this.s}),c(c$,"length",function(){return this.s.length}),c(c$,"indexOf",function(a){return this.s.indexOf(a)},"~S"),c(c$,"charAt",function(a){return this.s.charAt(a)},"~N"),c(c$,"charCodeAt",function(a){return this.s.charCodeAt(a)},
"~N"),c(c$,"setLength",function(a){this.s=this.s.substring(0,a)},"~N"),c(c$,"lastIndexOf",function(a){return this.s.lastIndexOf(a)},"~S"),c(c$,"indexOf2",function(a,b){return this.s.indexOf(a,b)},"~S,~N"),c(c$,"substring",function(a){return this.s.substring(a)},"~N"),c(c$,"substring2",function(a,b){return this.s.substring(a,b)},"~N,~N"),c(c$,"toBytes",function(a,b){0>b&&(b=this.length()-a);for(var d=Q(b,0),f=a+b,c=f-a;--f>=a;)d[--c]=this.charAt(f).charCodeAt(0);return d},"~N,~N"),u("JU"),v(["javajs.api.JSONEncodable"],
"JU.T3",["java.lang.Float"],function(){c$=s(function(){this.z=this.y=this.x=0;p(this,arguments)},JU,"T3",null,[javajs.api.JSONEncodable,java.io.Serializable]);c(c$,"set",function(a,b,d){this.x=a;this.y=b;this.z=d},"~N,~N,~N");c(c$,"setA",function(a){this.x=a[0];this.y=a[1];this.z=a[2]},"~A");c(c$,"setT",function(a){this.x=a.x;this.y=a.y;this.z=a.z},"JU.T3");c(c$,"add2",function(a,b){this.x=a.x+b.x;this.y=a.y+b.y;this.z=a.z+b.z},"JU.T3,JU.T3");c(c$,"add",function(a){this.x+=a.x;this.y+=a.y;this.z+=
a.z},"JU.T3");c(c$,"distanceSquared",function(a){var b=this.x-a.x,d=this.y-a.y;a=this.z-a.z;return b*b+d*d+a*a},"JU.T3");c(c$,"distance",function(a){return Math.sqrt(this.distanceSquared(a))},"JU.T3");c(c$,"sub2",function(a,b){this.x=a.x-b.x;this.y=a.y-b.y;this.z=a.z-b.z},"JU.T3,JU.T3");c(c$,"sub",function(a){this.x-=a.x;this.y-=a.y;this.z-=a.z},"JU.T3");c(c$,"scale",function(a){this.x*=a;this.y*=a;this.z*=a},"~N");c(c$,"add3",function(a,b,d){this.x+=a;this.y+=b;this.z+=d},"~N,~N,~N");c(c$,"scaleT",
function(a){this.x*=a.x;this.y*=a.y;this.z*=a.z},"JU.T3");c(c$,"scaleAdd2",function(a,b,d){this.x=a*b.x+d.x;this.y=a*b.y+d.y;this.z=a*b.z+d.z},"~N,JU.T3,JU.T3");c(c$,"ave",function(a,b){this.x=(a.x+b.x)/2;this.y=(a.y+b.y)/2;this.z=(a.z+b.z)/2},"JU.T3,JU.T3");c(c$,"dot",function(a){return this.x*a.x+this.y*a.y+this.z*a.z},"JU.T3");c(c$,"lengthSquared",function(){return this.x*this.x+this.y*this.y+this.z*this.z});c(c$,"length",function(){return Math.sqrt(this.lengthSquared())});c(c$,"normalize",function(){var a=
this.length();this.x/=a;this.y/=a;this.z/=a});c(c$,"cross",function(a,b){this.set(a.y*b.z-a.z*b.y,a.z*b.x-a.x*b.z,a.x*b.y-a.y*b.x)},"JU.T3,JU.T3");j(c$,"hashCode",function(){var a;a=31+JU.T3.floatToIntBits0(this.x);a=31*a+JU.T3.floatToIntBits0(this.y);a=31*a+JU.T3.floatToIntBits0(this.z);return a^a>>32});c$.floatToIntBits0=c(c$,"floatToIntBits0",function(a){return 0==a?0:Float.floatToIntBits(a)},"~N");j(c$,"equals",function(a){return!q(a,JU.T3)?!1:this.x==a.x&&this.y==a.y&&this.z==a.z},"~O");j(c$,
"toString",function(){return"{"+this.x+", "+this.y+", "+this.z+"}"});j(c$,"toJSON",function(){return"["+this.x+","+this.y+","+this.z+"]"})}),u("JU"),c$=s(function(){this.z=this.y=this.x=0;p(this,arguments)},JU,"T3i",null,java.io.Serializable),t(c$,function(){}),c(c$,"set",function(a,b,d){this.x=a;this.y=b;this.z=d},"~N,~N,~N"),c(c$,"setT",function(a){this.x=a.x;this.y=a.y;this.z=a.z},"JU.T3i"),c(c$,"add",function(a){this.x+=a.x;this.y+=a.y;this.z+=a.z},"JU.T3i"),c(c$,"scaleAdd",function(a,b,d){this.x=
a*b.x+d.x;this.y=a*b.y+d.y;this.z=a*b.z+d.z},"~N,JU.T3i,JU.T3i"),j(c$,"hashCode",function(){return this.x^this.y^this.z}),j(c$,"equals",function(a){return!q(a,JU.T3i)?!1:this.x==a.x&&this.y==a.y&&this.z==a.z},"~O"),j(c$,"toString",function(){return"("+this.x+", "+this.y+", "+this.z+")"}),u("JU"),v(["JU.T3"],"JU.T4",null,function(){c$=s(function(){this.w=0;p(this,arguments)},JU,"T4",JU.T3);c(c$,"set4",function(a,b,d,f){this.x=a;this.y=b;this.z=d;this.w=f},"~N,~N,~N,~N");c(c$,"scale4",function(a){this.scale(a);
this.w*=a},"~N");j(c$,"hashCode",function(){return JU.T3.floatToIntBits0(this.x)^JU.T3.floatToIntBits0(this.y)^JU.T3.floatToIntBits0(this.z)^JU.T3.floatToIntBits0(this.w)});j(c$,"equals",function(a){return!q(a,JU.T4)?!1:this.x==a.x&&this.y==a.y&&this.z==a.z&&this.w==a.w},"~O");j(c$,"toString",function(){return"("+this.x+", "+this.y+", "+this.z+", "+this.w+")"});j(c$,"toJSON",function(){return"["+this.x+", "+this.y+", "+this.z+", "+this.w+"]"})}),u("JU"),v(["JU.T3"],"JU.V3",null,function(){c$=A(JU,
"V3",JU.T3);t(c$,function(){});c$.newV=c(c$,"newV",function(a){return JU.V3.new3(a.x,a.y,a.z)},"JU.T3");c$.newVsub=c(c$,"newVsub",function(a,b){return JU.V3.new3(a.x-b.x,a.y-b.y,a.z-b.z)},"JU.T3,JU.T3");c$.new3=c(c$,"new3",function(a,b,d){var f=new JU.V3;f.x=a;f.y=b;f.z=d;return f},"~N,~N,~N");c(c$,"angle",function(a){var b=this.y*a.z-this.z*a.y,d=this.z*a.x-this.x*a.z,f=this.x*a.y-this.y*a.x,b=Math.sqrt(b*b+d*d+f*f);return Math.abs(Math.atan2(b,this.dot(a)))},"JU.V3")}),u("javajs.api"),H(javajs.api,
"GenericBinaryDocument"),u("javajs.api"),H(javajs.api,"GenericZipTools"),u("javajs.api"),H(javajs.api,"GenericLineReader"),u("javajs.api"),c$=H(javajs.api,"GenericCifDataParser"),C(c$,"NONE",-1),u("javajs.api"),c$=A(javajs.api,"Interface"),c$.getInterface=c(c$,"getInterface",function(a){try{var b=ca._4Name(a);return null==b?null:b.newInstance()}catch(d){if(B(d,Exception))return System.out.println("Interface.java Error creating instance for "+a+": \n"+d),null;throw d;}},"~S"),u("JU"),c$=s(function(){this.data=
null;p(this,arguments)},JU,"BArray"),t(c$,function(a){this.data=a},"~A"),j(c$,"equals",function(a){if(q(a,JU.BArray)&&(a=a.data,a.length==this.data.length)){for(var b=0;b<a.length;b++)if(a[b]!=this.data[b])return!1;return!0}return!1},"~O"),c(c$,"hashCode",function(){return this.data.hashCode()}),j(c$,"toString",function(){return String.instantialize(this.data)}),u("JU"),c$=s(function(){this.buf=null;this.ichCurrent=this.cchBuf=0;p(this,arguments)},JU,"LimitedLineReader"),t(c$,function(a,b){a.mark(b+
1);this.buf=fa(b,"\x00");this.cchBuf=Math.max(a.read(this.buf,0,b),0);this.ichCurrent=0;a.reset()},"java.io.BufferedReader,~N"),c(c$,"getHeader",function(a){return 0==a?String.instantialize(this.buf):String.instantialize(this.buf,0,Math.min(this.cchBuf,a))},"~N"),c(c$,"readLineWithNewline",function(){for(;this.ichCurrent<this.cchBuf;){for(var a=this.ichCurrent,b=String.fromCharCode(0);this.ichCurrent<this.cchBuf&&"\r"!=(b=this.buf[this.ichCurrent++])&&"\n"!=b;);"\r"==b&&(this.ichCurrent<this.cchBuf&&
"\n"==this.buf[this.ichCurrent])&&++this.ichCurrent;b=this.ichCurrent-a;if("#"!=this.buf[a])return String.instantialize(this.buf,a,b)}return""}),u("JU"),c$=s(function(){this.a=null;this.n=this.m=0;S("JU.Matrix.LUDecomp")||JU.Matrix.$Matrix$LUDecomp$();p(this,arguments)},JU,"Matrix",null,Cloneable),t(c$,function(a,b,d){this.a=null==a?ba(b,d,0):a;this.m=b;this.n=d},"~A,~N,~N"),c(c$,"getRowDimension",function(){return this.m}),c(c$,"getColumnDimension",function(){return this.n}),c(c$,"getArray",function(){return this.a}),
c(c$,"getArrayCopy",function(){for(var a=ba(this.m,this.n,0),b=this.m;0<=--b;)for(var d=this.n;0<=--d;)a[b][d]=this.a[b][d];return a}),c(c$,"copy",function(){for(var a=new JU.Matrix(null,this.m,this.n),b=a.a,d=this.m;0<=--d;)for(var f=this.n;0<=--f;)b[d][f]=this.a[d][f];return a}),j(c$,"clone",function(){return this.copy()}),c(c$,"getSubmatrix",function(a,b,d,f){for(var c=new JU.Matrix(null,d,f),e=c.a;0<=--d;)for(var h=f;0<=--h;)e[d][h]=this.a[a+d][b+h];return c},"~N,~N,~N,~N"),c(c$,"getMatrixSelected",
function(a,b){for(var d=new JU.Matrix(null,a.length,b),f=d.a,c=a.length;0<=--c;)for(var e=this.a[a[c]],h=b;0<=--h;)f[c][h]=e[h];return d},"~A,~N"),c(c$,"transpose",function(){for(var a=new JU.Matrix(null,this.n,this.m),b=a.a,d=this.m;0<=--d;)for(var f=this.n;0<=--f;)b[f][d]=this.a[d][f];return a}),c(c$,"add",function(a){return this.scaleAdd(a,1)},"JU.Matrix"),c(c$,"sub",function(a){return this.scaleAdd(a,-1)},"JU.Matrix"),c(c$,"scaleAdd",function(a,b){for(var d=new JU.Matrix(null,this.m,this.n),f=
d.a,c=a.a,e=this.m;0<=--e;)for(var h=this.n;0<=--h;)f[e][h]=c[e][h]*b+this.a[e][h];return d},"JU.Matrix,~N"),c(c$,"mul",function(a){if(a.m!=this.n)return null;var b=new JU.Matrix(null,this.m,a.n),d=b.a,f=a.a;for(a=a.n;0<=--a;)for(var c=this.m;0<=--c;){for(var e=this.a[c],h=0,l=this.n;0<=--l;)h+=e[l]*f[l][a];d[c][a]=h}return b},"JU.Matrix"),c(c$,"inverse",function(){return T(JU.Matrix.LUDecomp,this,null,this.m,this.n).solve(JU.Matrix.identity(this.m,this.m),this.n)}),c(c$,"trace",function(){for(var a=
0,b=Math.min(this.m,this.n);0<=--b;)a+=this.a[b][b];return a}),c$.identity=c(c$,"identity",function(a,b){for(var d=new JU.Matrix(null,a,b),f=d.a,c=Math.min(a,b);0<=--c;)f[c][c]=1;return d},"~N,~N"),c(c$,"getRotation",function(){return this.getSubmatrix(0,0,this.m-1,this.n-1)}),c(c$,"getTranslation",function(){return this.getSubmatrix(0,this.n-1,this.m-1,1)}),c$.newT=c(c$,"newT",function(a,b){return b?new JU.Matrix([[a.x],[a.y],[a.z]],3,1):new JU.Matrix([[a.x,a.y,a.z]],1,3)},"JU.T3,~B"),j(c$,"toString",
function(){for(var a="[\n",b=0;b<this.m;b++){for(var a=a+"  [",d=0;d<this.n;d++)a+=" "+this.a[b][d];a+="]\n"}return a+"]"}),c$.$Matrix$LUDecomp$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.piv=this.LU=null;this.pivsign=0;p(this,arguments)},JU.Matrix,"LUDecomp");t(c$,function(a,b){this.LU=this.b$["JU.Matrix"].getArrayCopy();this.piv=E(a,0);for(var d=a;0<=--d;)this.piv[d]=d;this.pivsign=1;for(var f,d=ba(a,0),c=0;c<b;c++){for(var e=a;0<=--e;)d[e]=this.LU[e][c];for(var h=a;0<=--h;){f=
this.LU[h];for(var e=Math.min(h,c),l=0,k=e;0<=--k;)l+=f[k]*d[k];f[c]=d[h]-=l}e=c;for(l=a;--l>c;)Math.abs(d[l])>Math.abs(d[e])&&(e=l);if(e!=c){for(k=b;0<=--k;)f=this.LU[e][k],this.LU[e][k]=this.LU[c][k],this.LU[c][k]=f;f=this.piv[e];this.piv[e]=this.piv[c];this.piv[c]=f;this.pivsign=-this.pivsign}if((new Boolean(c<a&0!=this.LU[c][c])).valueOf())for(k=a;--k>c;)this.LU[k][c]/=this.LU[c][c]}},"~N,~N");c(c$,"solve",function(a,b){for(var d=0;d<b;d++)if(0==this.LU[d][d])return null;for(var d=a.n,f=a.getMatrixSelected(this.piv,
d),c=f.a,e=0;e<b;e++)for(var h=e+1;h<b;h++)for(var l=0;l<d;l++)c[h][l]-=c[e][l]*this.LU[h][e];for(e=b;0<=--e;){for(h=d;0<=--h;)c[e][h]/=this.LU[e][e];for(h=e;0<=--h;)for(l=d;0<=--l;)c[h][l]-=c[e][l]*this.LU[h][e]}return f},"JU.Matrix,~N");c$=L()},u("JU"),v(["JU.P4"],"JU.Quat",["java.lang.Float","JU.A4","$.M3","$.V3"],function(){c$=s(function(){this.q3=this.q2=this.q1=this.q0=0;this.mat=null;p(this,arguments)},JU,"Quat");t(c$,function(){this.q0=1});c$.newQ=c(c$,"newQ",function(a){var b=new JU.Quat;
b.set(a);return b},"JU.Quat");c$.newVA=c(c$,"newVA",function(a,b){var d=new JU.Quat;d.setTA(a,b);return d},"JU.T3,~N");c$.newM=c(c$,"newM",function(a){var b=new JU.Quat;b.setM(JU.M3.newM3(a));return b},"JU.M3");c$.newAA=c(c$,"newAA",function(a){var b=new JU.Quat;b.setAA(a);return b},"JU.A4");c$.newP4=c(c$,"newP4",function(a){var b=new JU.Quat;b.setP4(a);return b},"JU.P4");c$.new4=c(c$,"new4",function(a,b,d,f){var c=new JU.Quat;if(-1>f)return c.q0=-1,c;if(1<f)return c.q0=1,c;c.q0=f;c.q1=a;c.q2=b;c.q3=
d;return c},"~N,~N,~N,~N");c(c$,"set",function(a){this.q0=a.q0;this.q1=a.q1;this.q2=a.q2;this.q3=a.q3},"JU.Quat");c(c$,"setP4",function(a){var b=null==a?0:a.distance4(JU.Quat.qZero);0==b?this.q0=1:(this.q0=a.w/b,this.q1=a.x/b,this.q2=a.y/b,this.q3=a.z/b)},"JU.P4");c(c$,"setTA",function(a,b){if(0==a.x&&0==a.y&&0==a.z)this.q0=1;else{var d=Math.sin(0.017453292519943295*(b/2))/Math.sqrt(a.x*a.x+a.y*a.y+a.z*a.z);this.q0=Math.cos(0.017453292519943295*(b/2));this.q1=a.x*d;this.q2=a.y*d;this.q3=a.z*d}},"JU.T3,~N");
c(c$,"setAA",function(a){a=JU.A4.newAA(a);0==a.angle&&(a.y=1);this.setM((new JU.M3).setAA(a))},"JU.A4");c(c$,"setM",function(a){this.mat=a;var b=a.m00+a.m11+a.m22,d,f,c;0.5<=b?(b=Math.sqrt(1+b),d=(a.m21-a.m12)/b,f=(a.m02-a.m20)/b,c=(a.m10-a.m01)/b):0.5<=(d=a.m00+a.m00-b)?(d=Math.sqrt(1+d),b=(a.m21-a.m12)/d,f=(a.m10+a.m01)/d,c=(a.m20+a.m02)/d):0.5<=(d=a.m11+a.m11-b)||a.m11>a.m22?(f=Math.sqrt(1+d),b=(a.m02-a.m20)/f,d=(a.m10+a.m01)/f,c=(a.m21+a.m12)/f):(c=Math.sqrt(1+a.m22+a.m22-b),b=(a.m10-a.m01)/c,
d=(a.m20+a.m02)/c,f=(a.m21+a.m12)/c);this.q0=0.5*b;this.q1=0.5*d;this.q2=0.5*f;this.q3=0.5*c},"JU.M3");c(c$,"setRef",function(a){null==a?this.mul(this.getFixFactor()):0<=this.dot(a)||(this.q0*=-1,this.q1*=-1,this.q2*=-1,this.q3*=-1)},"JU.Quat");c$.getQuaternionFrame=c(c$,"getQuaternionFrame",function(a,b,d){b=JU.V3.newV(b);d=JU.V3.newV(d);null!=a&&(b.sub(a),d.sub(a));return JU.Quat.getQuaternionFrameV(b,d,null,!1)},"JU.P3,JU.T3,JU.T3");c$.getQuaternionFrameV=c(c$,"getQuaternionFrameV",function(a,
b,d,f){null==d&&(d=new JU.V3,d.cross(a,b),f&&a.cross(b,d));b=new JU.V3;b.cross(d,a);a.normalize();b.normalize();d.normalize();f=new JU.M3;f.setColumnV(0,a);f.setColumnV(1,b);f.setColumnV(2,d);return JU.Quat.newM(f)},"JU.V3,JU.V3,JU.V3,~B");c(c$,"getMatrix",function(){null==this.mat&&this.setMatrix();return this.mat});c(c$,"setMatrix",function(){this.mat=new JU.M3;this.mat.m00=this.q0*this.q0+this.q1*this.q1-this.q2*this.q2-this.q3*this.q3;this.mat.m01=2*this.q1*this.q2-2*this.q0*this.q3;this.mat.m02=
2*this.q1*this.q3+2*this.q0*this.q2;this.mat.m10=2*this.q1*this.q2+2*this.q0*this.q3;this.mat.m11=this.q0*this.q0-this.q1*this.q1+this.q2*this.q2-this.q3*this.q3;this.mat.m12=2*this.q2*this.q3-2*this.q0*this.q1;this.mat.m20=2*this.q1*this.q3-2*this.q0*this.q2;this.mat.m21=2*this.q2*this.q3+2*this.q0*this.q1;this.mat.m22=this.q0*this.q0-this.q1*this.q1-this.q2*this.q2+this.q3*this.q3});c(c$,"add",function(a){return JU.Quat.newVA(this.getNormal(),this.getTheta()+a)},"~N");c(c$,"mul",function(a){return 1==
a?JU.Quat.new4(this.q1,this.q2,this.q3,this.q0):JU.Quat.newVA(this.getNormal(),this.getTheta()*a)},"~N");c(c$,"mulQ",function(a){return JU.Quat.new4(this.q0*a.q1+this.q1*a.q0+this.q2*a.q3-this.q3*a.q2,this.q0*a.q2+this.q2*a.q0+this.q3*a.q1-this.q1*a.q3,this.q0*a.q3+this.q3*a.q0+this.q1*a.q2-this.q2*a.q1,this.q0*a.q0-this.q1*a.q1-this.q2*a.q2-this.q3*a.q3)},"JU.Quat");c(c$,"div",function(a){return this.mulQ(a.inv())},"JU.Quat");c(c$,"divLeft",function(a){return this.inv().mulQ(a)},"JU.Quat");c(c$,
"dot",function(a){return this.q0*a.q0+this.q1*a.q1+this.q2*a.q2+this.q3*a.q3},"JU.Quat");c(c$,"inv",function(){return JU.Quat.new4(-this.q1,-this.q2,-this.q3,this.q0)});c(c$,"negate",function(){return JU.Quat.new4(-this.q1,-this.q2,-this.q3,-this.q0)});c(c$,"getFixFactor",function(){return 0>this.q0||0==this.q0&&(0>this.q1||0==this.q1&&(0>this.q2||0==this.q2&&0>this.q3))?-1:1});c(c$,"getVector",function(a){return this.getVectorScaled(a,1)},"~N");c(c$,"getVectorScaled",function(a,b){if(-1==a)return b*=
this.getFixFactor(),JU.V3.new3(this.q1*b,this.q2*b,this.q3*b);null==this.mat&&this.setMatrix();var d=new JU.V3;this.mat.getColumnV(a,d);1!=b&&d.scale(b);return d},"~N,~N");c(c$,"getNormal",function(){var a=JU.Quat.getRawNormal(this);a.scale(this.getFixFactor());return a});c$.getRawNormal=c(c$,"getRawNormal",function(a){a=JU.V3.new3(a.q1,a.q2,a.q3);if(0==a.length())return JU.V3.new3(0,0,1);a.normalize();return a},"JU.Quat");c(c$,"getTheta",function(){return 360*Math.acos(Math.abs(this.q0))/3.141592653589793});
c(c$,"getThetaRadians",function(){return 2*Math.acos(Math.abs(this.q0))});c(c$,"getNormalDirected",function(a){var b=this.getNormal();0>b.x*a.x+b.y*a.y+b.z*a.z&&b.scale(-1);return b},"JU.V3");c(c$,"get3dProjection",function(a){a.set(this.q1,this.q2,this.q3);return a},"JU.V3");c(c$,"getThetaDirected",function(a){var b=this.getTheta(),d=this.getNormal();0>a.x*this.q1+a.y*this.q2+a.z*this.q3&&(d.scale(-1),b=-b);a.set4(d.x,d.y,d.z,b);return a},"JU.P4");c(c$,"getThetaDirectedV",function(a){var b=this.getTheta(),
d=this.getNormal();0>a.x*this.q1+a.y*this.q2+a.z*this.q3&&(d.scale(-1),b=-b);return b},"JU.V3");c(c$,"toPoint4f",function(){return JU.P4.new4(this.q1,this.q2,this.q3,this.q0)});c(c$,"toAxisAngle4f",function(){var a=2*Math.acos(Math.abs(this.q0)),b=Math.sin(a/2),d=this.getNormal();0>b&&(d.scale(-1),a=3.141592653589793-a);return JU.A4.newVA(d,a)});c(c$,"transform2",function(a,b){null==this.mat&&this.setMatrix();this.mat.rotate2(a,b);return b},"JU.T3,JU.T3");c(c$,"leftDifference",function(a){a=0>this.dot(a)?
a.negate():a;return this.inv().mulQ(a)},"JU.Quat");c(c$,"rightDifference",function(a){a=0>this.dot(a)?a.negate():a;return this.mulQ(a.inv())},"JU.Quat");j(c$,"toString",function(){return"{"+this.q1+" "+this.q2+" "+this.q3+" "+this.q0+"}"});c$.div=c(c$,"div",function(a,b,d,f){var c;if(null==a||null==b||0==(c=Math.min(a.length,b.length)))return null;0<d&&c>d&&(c=d);d=Array(c);for(var e=0;e<c;e++){if(null==a[e]||null==b[e])return null;d[e]=f?a[e].divLeft(b[e]):a[e].div(b[e])}return d},"~A,~A,~N,~B");
c$.sphereMean=c(c$,"sphereMean",function(a,b,d){if(null==a||0==a.length)return new JU.Quat;null==b&&(b=M(1,0));if(1==a.length)return b[0]=0,JU.Quat.newQ(a[0]);for(var f=3.4028235E38,c=3.4028235E38,e=JU.Quat.simpleAverage(a);f>d&&0!=c;)e=JU.Quat.newMean(a,e),b[0]=JU.Quat.stdDev(a,e),f=Math.abs(b[0]-c),c=b[0];return e},"~A,~A,~N");c$.simpleAverage=c(c$,"simpleAverage",function(a){var b=JU.V3.new3(0,0,1),d=a[0].getNormal();b.add(d);for(var f=a.length;0<=--f;)b.add(a[f].getNormalDirected(b));b.sub(d);
b.normalize();for(var c=0,f=a.length;0<=--f;)c+=Math.abs(a[f].get3dProjection(d).dot(b));0!=c&&b.scale(c/a.length);c=Math.sqrt(1-b.lengthSquared());Float.isNaN(c)&&(c=0);return JU.Quat.newP4(JU.P4.new4(b.x,b.y,b.z,c))},"~A");c$.newMean=c(c$,"newMean",function(a,b){for(var d=new JU.V3,f,c,e=a.length;0<=--e;)f=a[e],c=f.div(b),f=c.getNormal(),f.scale(c.getTheta()),d.add(f);d.scale(1/a.length);return JU.Quat.newVA(d,d.length()).mulQ(b)},"~A,JU.Quat");c$.stdDev=c(c$,"stdDev",function(a,b){for(var d=0,
f=a.length,c=f;0<=--c;)var e=a[c].div(b).getTheta(),d=d+e*e;return Math.sqrt(d/f)},"~A,JU.Quat");c(c$,"getEulerZYZ",function(){var a,b,d;if(0==this.q1&&0==this.q2)return a=this.getTheta(),[0>this.q3?-a:a,0,0];a=Math.atan2(2*(this.q2*this.q3+this.q0*this.q1),2*(-this.q1*this.q3+this.q0*this.q2));b=Math.acos(this.q3*this.q3-this.q2*this.q2-this.q1*this.q1+this.q0*this.q0);d=Math.atan2(2*(this.q2*this.q3-this.q0*this.q1),2*(this.q0*this.q2+this.q1*this.q3));return[a/0.017453292519943295,b/0.017453292519943295,
d/0.017453292519943295]});c(c$,"getEulerZXZ",function(){var a,b,d;if(0==this.q1&&0==this.q2)return a=this.getTheta(),[0>this.q3?-a:a,0,0];a=Math.atan2(2*(this.q1*this.q3-this.q0*this.q2),2*(this.q0*this.q1+this.q2*this.q3));b=Math.acos(this.q3*this.q3-this.q2*this.q2-this.q1*this.q1+this.q0*this.q0);d=Math.atan2(2*(this.q1*this.q3+this.q0*this.q2),2*(-this.q2*this.q3+this.q0*this.q1));return[a/0.017453292519943295,b/0.017453292519943295,d/0.017453292519943295]});c$.qZero=c$.prototype.qZero=new JU.P4;
C(c$,"RAD_PER_DEG",0.017453292519943295)}),u("JU"),v(["javajs.api.GenericLineReader"],"JU.Rdr","java.io.BufferedInputStream $.BufferedReader $.ByteArrayInputStream $.InputStreamReader $.StringReader JU.AU $.Base64 $.Encoding $.SB".split(" "),function(){c$=s(function(){this.reader=null;p(this,arguments)},JU,"Rdr",null,javajs.api.GenericLineReader);t(c$,function(a){this.reader=a},"java.io.BufferedReader");j(c$,"readNextLine",function(){return this.reader.readLine()});c$.readCifData=c(c$,"readCifData",
function(a,b){return a.set(null,b).getAllCifData()},"javajs.api.GenericCifDataParser,java.io.BufferedReader");c$.fixUTF=c(c$,"fixUTF",function(a){var b=JU.Rdr.getUTFEncoding(a);if(b!==JU.Encoding.NONE)try{var d=String.instantialize(a,b.name().$replace("_","-"));switch(b){case JU.Encoding.UTF8:case JU.Encoding.UTF_16BE:case JU.Encoding.UTF_16LE:d=d.substring(1)}return d}catch(f){if(B(f,java.io.UnsupportedEncodingException))System.out.println(f);else throw f;}return String.instantialize(a)},"~A");c$.getUTFEncoding=
c(c$,"getUTFEncoding",function(a){return 3<=a.length&&239==a[0]&&187==a[1]&&191==a[2]?JU.Encoding.UTF8:4<=a.length&&0==a[0]&&0==a[1]&&254==a[2]&&255==a[3]?JU.Encoding.UTF_32BE:4<=a.length&&255==a[0]&&254==a[1]&&0==a[2]&&0==a[3]?JU.Encoding.UTF_32LE:2<=a.length&&255==a[0]&&254==a[1]?JU.Encoding.UTF_16LE:2<=a.length&&254==a[0]&&255==a[1]?JU.Encoding.UTF_16BE:JU.Encoding.NONE},"~A");c$.getUTFEncodingForStream=c(c$,"getUTFEncodingForStream",function(a){a.resetStream();var b=Q(4,0);b[3]=1;try{a.mark(5)}catch(d){if(B(d,
Exception))return JU.Encoding.NONE;throw d;}a.read(b,0,4);a.reset();return JU.Rdr.getUTFEncoding(b)},"java.io.BufferedInputStream");c$.isBase64=c(c$,"isBase64",function(a){return 0==a.indexOf(";base64,")},"JU.SB");c$.isCompoundDocumentS=c(c$,"isCompoundDocumentS",function(a){return JU.Rdr.isCompoundDocumentB(JU.Rdr.getMagic(a,8))},"java.io.InputStream");c$.isCompoundDocumentB=c(c$,"isCompoundDocumentB",function(a){return 8<=a.length&&208==a[0]&&207==a[1]&&17==a[2]&&224==a[3]&&161==a[4]&&177==a[5]&&
26==a[6]&&225==a[7]},"~A");c$.isGzipS=c(c$,"isGzipS",function(a){return JU.Rdr.isGzipB(JU.Rdr.getMagic(a,2))},"java.io.InputStream");c$.isGzipB=c(c$,"isGzipB",function(a){return null!=a&&2<=a.length&&31==a[0]&&139==a[1]},"~A");c$.isPickleS=c(c$,"isPickleS",function(a){return JU.Rdr.isPickleB(JU.Rdr.getMagic(a,2))},"java.io.InputStream");c$.isPickleB=c(c$,"isPickleB",function(a){return null!=a&&2<=a.length&&125==a[0]&&113==a[1]},"~A");c$.isPngZipStream=c(c$,"isPngZipStream",function(a){return JU.Rdr.isPngZipB(JU.Rdr.getMagic(a,
55))},"java.io.InputStream");c$.isPngZipB=c(c$,"isPngZipB",function(a){return 0==a[50]&&80==a[51]&&78==a[52]&&71==a[53]&&74==a[54]},"~A");c$.isZipS=c(c$,"isZipS",function(a){return JU.Rdr.isZipB(JU.Rdr.getMagic(a,4))},"java.io.InputStream");c$.isZipB=c(c$,"isZipB",function(a){return 4<=a.length&&80==a[0]&&75==a[1]&&3==a[2]&&4==a[3]},"~A");c$.getMagic=c(c$,"getMagic",function(a,b){var d=Q(b,0);a.resetStream();try{a.mark(b+1),a.read(d,0,b)}catch(f){if(!B(f,java.io.IOException))throw f;}try{a.reset()}catch(c){if(!B(c,
java.io.IOException))throw c;}return d},"java.io.InputStream,~N");c$.getBIS=c(c$,"getBIS",function(a){return new java.io.BufferedInputStream(new java.io.ByteArrayInputStream(a))},"~A");c$.getBR=c(c$,"getBR",function(a){return new java.io.BufferedReader(new java.io.StringReader(a))},"~S");c$.getUnzippedInputStream=c(c$,"getUnzippedInputStream",function(a,b){for(;JU.Rdr.isGzipS(b);)b=new java.io.BufferedInputStream(JU.Rdr.newGZIPInputStream(a,b));return b},"javajs.api.GenericZipTools,java.io.BufferedInputStream");
c$.getBytesFromSB=c(c$,"getBytesFromSB",function(a){return JU.Rdr.isBase64(a)?JU.Base64.decodeBase64(a.substring(8)):a.toBytes(0,-1)},"JU.SB");c$.getStreamAsBytes=c(c$,"getStreamAsBytes",function(a,b){for(var d=Q(1024,0),f=null==b?Q(4096,0):null,c=0,e=0;0<(c=a.read(d,0,1024));)e+=c,null==b?(e>=f.length&&(f=JU.AU.ensureLengthByte(f,2*e)),System.arraycopy(d,0,f,e-c,c)):b.write(d,0,c);a.close();return null==b?JU.AU.arrayCopyByte(f,e):e+" bytes"},"java.io.BufferedInputStream,JU.OC");c$.getBufferedReader=
c(c$,"getBufferedReader",function(a,b){if(JU.Rdr.getUTFEncodingForStream(a)===JU.Encoding.NONE)return new java.io.BufferedReader(new java.io.InputStreamReader(a,null==b?"UTF-8":b));var d=JU.Rdr.getLimitedStreamBytes(a,-1);a.close();return JU.Rdr.getBR(null==b?JU.Rdr.fixUTF(d):String.instantialize(d,b))},"java.io.BufferedInputStream,~S");c$.getLimitedStreamBytes=c(c$,"getLimitedStreamBytes",function(a,b){var d=0<b&&1024>b?b:1024,f=Q(d,0),c=Q(0>b?4096:b,0),e=0,h=0;for(0>b&&(b=2147483647);h<b&&0<(e=
a.read(f,0,d));)h+=e,h>c.length&&(c=JU.AU.ensureLengthByte(c,2*h)),System.arraycopy(f,0,c,h-e,e),2147483647!=b&&h+d>c.length&&(d=c.length-h);if(h==c.length)return c;f=Q(h,0);System.arraycopy(c,0,f,0,h);return f},"java.io.InputStream,~N");c$.StreamToUTF8String=c(c$,"StreamToUTF8String",function(a){var b=Array(1);try{JU.Rdr.readAllAsString(JU.Rdr.getBufferedReader(a,"UTF-8"),-1,!0,b,0)}catch(d){if(!B(d,java.io.IOException))throw d;}return b[0]},"java.io.BufferedInputStream");c$.readAllAsString=c(c$,
"readAllAsString",function(a,b,d,f,c){try{var e=JU.SB.newN(8192),h;if(0>b){if(h=a.readLine(),d||null!=h&&0>h.indexOf("\x00")&&(4!=h.length||65533!=h.charCodeAt(0)||1!=h.indexOf("PNG")))for(e.append(h).appendC("\n");null!=(h=a.readLine());)e.append(h).appendC("\n")}else{d=0;for(var l;d<b&&null!=(h=a.readLine());){if(b-d<(l=h.length)+1)h=h.substring(0,b-d-1);e.append(h).appendC("\n");d+=l+1}}a.close();f[c]=e.toString();return!0}catch(k){if(B(k,Exception))return f[c]=k.toString(),!1;throw k;}},"java.io.BufferedReader,~N,~B,~A,~N");
c$.getPngZipPointAndCount=c(c$,"getPngZipPointAndCount",function(a,b){a.mark(75);try{var d=JU.Rdr.getLimitedStreamBytes(a,74);a.reset();for(var f=0,c=64,e=1;54<--c;e*=10)f+=(d[c]-48)*e;for(var h=0,c=74,e=1;64<--c;e*=10)h+=(d[c]-48)*e;b[0]=f;b[1]=h}catch(l){b[1]=0}},"java.io.BufferedInputStream,~A");c$.getPngZipStream=c(c$,"getPngZipStream",function(a,b){if(!JU.Rdr.isPngZipStream(a))return a;var d=Q(0,0);a.mark(75);try{var f=E(2,0);JU.Rdr.getPngZipPointAndCount(a,f);if(0!=f[1]){for(var c=f[0];0<c;)c-=
a.skip(c);if(!b)return a;d=JU.Rdr.getLimitedStreamBytes(a,f[1])}}catch(e){}finally{try{b&&a.close()}catch(h){if(!B(h,Exception))throw h;}}return JU.Rdr.getBIS(d)},"java.io.BufferedInputStream,~B");c$.readFileAsMap=c(c$,"readFileAsMap",function(a,b,d,f){a.readFileAsMap(b,d,f)},"javajs.api.GenericZipTools,java.io.BufferedInputStream,java.util.Map,~S");c$.getZipDirectoryAsStringAndClose=c(c$,"getZipDirectoryAsStringAndClose",function(a,b){return a.getZipDirectoryAsStringAndClose(b)},"javajs.api.GenericZipTools,java.io.BufferedInputStream");
c$.newGZIPInputStream=c(c$,"newGZIPInputStream",function(a,b){return a.newGZIPInputStream(b)},"javajs.api.GenericZipTools,java.io.BufferedInputStream");c$.newZipInputStream=c(c$,"newZipInputStream",function(a,b){return a.newZipInputStream(b)},"javajs.api.GenericZipTools,java.io.InputStream");c$.getZipFileDirectory=c(c$,"getZipFileDirectory",function(a,b,d,f,c){return a.getZipFileDirectory(a,b,d,f,c)},"javajs.api.GenericZipTools,java.io.BufferedInputStream,~A,~N,~B");c$.getZipDirectoryAndClose=c(c$,
"getZipDirectoryAndClose",function(a,b,d){return a.getZipDirectoryAndClose(b,d)},"javajs.api.GenericZipTools,java.io.BufferedInputStream,~S");c$.getAllZipData=c(c$,"getAllZipData",function(a,b,d,f,c,e){a.getAllZipData(b,d,f,c,e)},"javajs.api.GenericZipTools,java.io.BufferedInputStream,~A,~S,~S,java.util.Map");c$.getZipFileContentsAsBytes=c(c$,"getZipFileContentsAsBytes",function(a,b,d,f){return a.getZipFileContentsAsBytes(b,d,f)},"javajs.api.GenericZipTools,java.io.BufferedInputStream,~A,~N");c$.addZipEntry=
c(c$,"addZipEntry",function(a,b,d){a.addZipEntry(b,d)},"javajs.api.GenericZipTools,~O,~S");c$.closeZipEntry=c(c$,"closeZipEntry",function(a,b){a.closeZipEntry(b)},"javajs.api.GenericZipTools,~O");c$.getZipOutputStream=c(c$,"getZipOutputStream",function(a,b){return a.getZipOutputStream(b)},"javajs.api.GenericZipTools,~O");c$.getCrcValue=c(c$,"getCrcValue",function(a,b){return a.getCrcValue(b)},"javajs.api.GenericZipTools,~A");c$.getZipRoot=c(c$,"getZipRoot",function(a){var b=a.indexOf("|");return 0>
b?a:a.substring(0,b)},"~S")}),u("JU"),v(null,"JU.T3d",["java.lang.Double"],function(){c$=s(function(){this.z=this.y=this.x=0;p(this,arguments)},JU,"T3d",null,java.io.Serializable);t(c$,function(){});c(c$,"set",function(a,b,d){this.x=a;this.y=b;this.z=d},"~N,~N,~N");c(c$,"setA",function(a){this.x=a[0];this.y=a[1];this.z=a[2]},"~A");c(c$,"setT",function(a){this.x=a.x;this.y=a.y;this.z=a.z},"JU.T3d");c(c$,"add2",function(a,b){this.x=a.x+b.x;this.y=a.y+b.y;this.z=a.z+b.z},"JU.T3d,JU.T3d");c(c$,"add",
function(a){this.x+=a.x;this.y+=a.y;this.z+=a.z},"JU.T3d");c(c$,"sub2",function(a,b){this.x=a.x-b.x;this.y=a.y-b.y;this.z=a.z-b.z},"JU.T3d,JU.T3d");c(c$,"sub",function(a){this.x-=a.x;this.y-=a.y;this.z-=a.z},"JU.T3d");c(c$,"scale",function(a){this.x*=a;this.y*=a;this.z*=a},"~N");c(c$,"scaleAdd",function(a,b,d){this.x=a*b.x+d.x;this.y=a*b.y+d.y;this.z=a*b.z+d.z},"~N,JU.T3d,JU.T3d");j(c$,"hashCode",function(){var a=JU.T3d.doubleToLongBits0(this.x),b=JU.T3d.doubleToLongBits0(this.y),d=JU.T3d.doubleToLongBits0(this.z);
return a^a>>32^b^b>>32^d^d>>32});c$.doubleToLongBits0=c(c$,"doubleToLongBits0",function(a){return 0==a?0:Double.doubleToLongBits(a)},"~N");j(c$,"equals",function(a){return!q(a,JU.T3d)?!1:this.x==a.x&&this.y==a.y&&this.z==a.z},"~O");j(c$,"toString",function(){return"{"+this.x+", "+this.y+", "+this.z+"}"})}),u("JU"),v(["JU.T3d"],"JU.V3d",null,function(){c$=A(JU,"V3d",JU.T3d);c(c$,"cross",function(a,b){this.set(a.y*b.z-a.z*b.y,a.z*b.x-a.x*b.z,a.x*b.y-a.y*b.x)},"JU.V3d,JU.V3d");c(c$,"normalize",function(){var a=
this.length();this.x/=a;this.y/=a;this.z/=a});c(c$,"dot",function(a){return this.x*a.x+this.y*a.y+this.z*a.z},"JU.V3d");c(c$,"lengthSquared",function(){return this.x*this.x+this.y*this.y+this.z*this.z});c(c$,"length",function(){return Math.sqrt(this.lengthSquared())})}),u("J.adapter.readers.molxyz"),v(["J.adapter.smarter.AtomSetCollectionReader"],"J.adapter.readers.molxyz.MolReader","java.lang.Exception $.Float JU.PT J.adapter.smarter.Atom J.api.JmolAdapter JU.Logger".split(" "),function(){c$=s(function(){this.haveAtomSerials=
this.is2D=!1;this.dimension=null;this.allow2D=!0;this.iatom0=0;this.vr=null;p(this,arguments)},J.adapter.readers.molxyz,"MolReader",J.adapter.smarter.AtomSetCollectionReader);j(c$,"initializeReader",function(){this.is2D=this.checkFilterKey("2D")});j(c$,"checkLine",function(){var a=this.line.startsWith("$MDL");if(a){if(this.discardLinesUntilStartsWith("$HDR"),this.rd(),null==this.line)return JU.Logger.warn("$HDR not found in MDL RG file"),this.continuing=!1}else if(this.line.equals("M  END"))return!0;
if(this.doGetModel(++this.modelNumber,null)&&(this.iatom0=this.asc.ac,this.processMolSdHeader(),this.processCtab(a),this.vr=null,this.isLastModel(this.modelNumber)))return this.continuing=!1;null!=this.line&&0>this.line.indexOf("$$$$")&&this.discardLinesUntilStartsWith("$$$$");return!0});j(c$,"finalizeSubclassReader",function(){this.finalizeReaderMR()});c(c$,"finalizeReaderMR",function(){this.is2D&&this.set2D();this.isTrajectory=!1;this.finalizeReaderASCR()});c(c$,"processMolSdHeader",function(){var a,
b=this.line;a=""+(this.line+"\n");this.asc.setCollectionName(this.line);this.rd();if(null!=this.line){a+=this.line+"\n";this.dimension=22>this.line.length?"3D":this.line.substring(20,22);if(!this.allow2D&&this.dimension.equals("2D"))throw new Exception("File is 2D, not 3D");this.asc.setInfo("dimension",this.dimension);this.rd();null!=this.line&&(a+=this.line+"\n",JU.Logger.info(a),this.checkCurrentLineForScript(),this.asc.setInfo("fileHeader",a),this.newAtomSet(b))}});c(c$,"processCtab",function(a){a&&
this.discardLinesUntilStartsWith("$CTAB");null!=this.rd()&&(0<=this.line.indexOf("V3000")?(this.is2D=this.dimension.equals("2D"),this.vr=this.getInterface("J.adapter.readers.molxyz.V3000Rdr").set(this),this.discardLinesUntilContains("COUNTS"),this.vr.readAtomsAndBonds(this.getTokens())):this.readAtomsAndBonds(this.parseIntRange(this.line,0,3),this.parseIntRange(this.line,3,6)),this.applySymmetryAndSetTrajectory())},"~B");c(c$,"readAtomsAndBonds",function(a,b){for(var d=0;d<a;++d){this.rd();var f=
this.line.length,c,e,h,l,k=0,j=0,m=-2147483648;e=this.parseFloatRange(this.line,0,10);h=this.parseFloatRange(this.line,10,20);l=this.parseFloatRange(this.line,20,30);if(34>f)c=this.line.substring(31).trim();else if(c=this.line.substring(31,34).trim(),39<=f){f=this.parseIntRange(this.line,36,39);1<=f&&7>=f&&(k=4-f);f=this.parseIntRange(this.line,34,36);if(0!=f&&-3<=f&&4>=f)switch(j=J.api.JmolAdapter.getNaturalIsotope(J.api.JmolAdapter.getElementNumber(c)),j){case 0:break;case 1:j=-f;break;default:j+=
f}-2147483648==m&&this.haveAtomSerials&&(m=d+1)}this.addMolAtom(m,j,c,k,e,h,l)}for(d=0;d<b;++d)this.rd(),h=0,c=this.line.substring(0,3).trim(),e=this.line.substring(3,6).trim(),l=this.parseIntRange(this.line,6,9),this.is2D&&(1==l&&12<=this.line.length)&&(h=this.parseIntRange(this.line,9,12)),l=this.fixOrder(l,h),this.haveAtomSerials?this.asc.addNewBondFromNames(c,e,l):this.asc.addNewBondWithOrder(this.iatom0+this.parseIntStr(c)-1,this.iatom0+this.parseIntStr(e)-1,l);for(;null!=this.rd()&&0!=this.line.indexOf("$$$$");)if(this.line.toUpperCase().contains("_PARTIAL_CHARGES"))try{for(var r=
this.asc.atoms,d=this.parseIntStr(this.rd());0<=--d;){var y=JU.PT.getTokens(this.rd()),w=this.parseIntStr(y[0])+this.iatom0-1,F=this.parseFloatStr(y[1]);Float.isNaN(F)||(r[w].partialCharge=F)}}catch(G){if(B(G,Exception))break;else throw G;}},"~N,~N");c(c$,"addMolAtom",function(a,b,d,f,c,e,h){switch(b){case 0:break;case -1:d="D";break;case -2:d="T";break;default:d=b+d}this.is2D&&0!=h&&(this.is2D=!1);b=new J.adapter.smarter.Atom;b.elementSymbol=d;b.formalCharge=f;this.setAtomCoordXYZ(b,c,e,h);-2147483648==
a?this.asc.addAtom(b):(this.haveAtomSerials=!0,b.atomSerial=a,this.asc.addAtomWithMappedSerialNumber(b))},"~N,~N,~S,~N,~N,~N,~N");c(c$,"fixOrder",function(a,b){switch(a){default:case 0:case -10:return 1;case 1:switch(b){case 1:return 1025;case 3:case 6:return 1041}break;case 2:case 3:break;case 4:return 515;case 5:return 66;case 6:return 513;case 7:return 514;case 8:case 9:return 33}return a},"~N,~N");c(c$,"addMolBond",function(a,b,d,f){d=this.fixOrder(d,f);this.haveAtomSerials?this.asc.addNewBondFromNames(a,
b,d):this.asc.addNewBondWithOrder(this.iatom0+this.parseIntStr(a)-1,this.iatom0+this.parseIntStr(b)-1,d)},"~S,~S,~N,~N")}),u("J.adapter.readers.molxyz"),v(["J.adapter.smarter.AtomSetCollectionReader"],"J.adapter.readers.molxyz.XyzReader",["java.lang.Float","JU.Logger"],function(){c$=A(J.adapter.readers.molxyz,"XyzReader",J.adapter.smarter.AtomSetCollectionReader);j(c$,"checkLine",function(){var a=this.parseIntStr(this.line);if(-2147483648==a)return this.continuing=!1;this.vibrationNumber=++this.modelNumber;
if(0>=this.desiredVibrationNumber?this.doGetModel(this.modelNumber,null):this.doGetVibration(this.vibrationNumber)){this.rd();this.checkCurrentLineForScript();this.asc.newAtomSet();var b=this.line;this.readAtoms(a);this.applySymmetryAndSetTrajectory();this.asc.setAtomSetName(b);if(this.isLastModel(this.modelNumber))return this.continuing=!1}else this.skipAtomSet(a);this.discardLinesUntilNonBlank();return!1});j(c$,"finalizeSubclassReader",function(){this.isTrajectory=!1;this.finalizeReaderASCR()});
c(c$,"skipAtomSet",function(a){for(this.rd();0<=--a;)this.rd()},"~N");c(c$,"readAtoms",function(a){for(var b=0;b<a;++b){this.rd();var d=this.getTokens();if(4>d.length)JU.Logger.warn("line cannot be read for XYZ atom data: "+this.line);else{var f=this.addAtomXYZSymName(d,1,null,null);this.setElementAndIsotope(f,d[0]);var c=4;switch(d.length){case 4:continue;case 5:case 6:case 8:case 9:if(0<=d[4].indexOf("."))f.partialCharge=this.parseFloatStr(d[4]);else{var e=this.parseIntStr(d[4]);-2147483648!=e&&
(f.formalCharge=e)}switch(d.length){case 5:continue;case 6:f.radius=this.parseFloatStr(d[5]);continue;case 9:f.atomSerial=this.parseIntStr(d[8])}c++;default:var e=this.parseFloatStr(d[c++]),h=this.parseFloatStr(d[c++]),d=this.parseFloatStr(d[c++]);if(Float.isNaN(e)||Float.isNaN(h)||Float.isNaN(d))continue;this.asc.addVibrationVector(f.index,e,h,d)}}}},"~N")}),u("J.adapter.smarter"),v(["JU.P3"],"J.adapter.smarter.Atom",["JU.AU","$.Lst","$.V3","JU.Vibration"],function(){c$=s(function(){this.index=this.atomSetIndex=
0;this.bsSymmetry=null;this.atomSite=0;this.elementSymbol=null;this.elementNumber=-1;this.atomName=null;this.formalCharge=-2147483648;this.partialCharge=NaN;this.vib=null;this.bfactor=NaN;this.foccupancy=1;this.radius=NaN;this.isHetero=!1;this.atomSerial=-2147483648;this.chainID=0;this.altLoc="\x00";this.group3=null;this.sequenceNumber=-2147483648;this.insertionCode="\x00";this.tensors=this.anisoBorU=null;this.ignoreSymmetry=!1;p(this,arguments)},J.adapter.smarter,"Atom",JU.P3,Cloneable);c(c$,"addTensor",
function(a,b,d){if(null==a)return null;if(d||null==this.tensors)this.tensors=new JU.Lst;this.tensors.addLast(a);null!=b&&a.setType(b);return a},"JU.Tensor,~S,~B");X(c$,function(){this.set(NaN,NaN,NaN)});c(c$,"getClone",function(){var a=this.clone();null!=this.vib&&(a.vib=q(this.vib,JU.Vibration)?this.vib.clone():JU.V3.newV(a.vib));null!=this.anisoBorU&&(a.anisoBorU=JU.AU.arrayCopyF(this.anisoBorU,-1));if(null!=this.tensors){a.tensors=new JU.Lst;for(var b=this.tensors.size();0<=--b;)a.tensors.addLast(this.tensors.get(b).copyTensor())}return a});
c(c$,"getElementSymbol",function(){if(null==this.elementSymbol&&null!=this.atomName){for(var a=this.atomName.length,b=0,d=String.fromCharCode(0);b<a&&!J.adapter.smarter.Atom.isValidSymChar1(d=this.atomName.charAt(b));)++b;switch(a-b){case 0:break;default:if(a=this.atomName.charAt(b+1),J.adapter.smarter.Atom.isValidSymNoCase(d,a)){this.elementSymbol=""+d+a;break}case 1:J.adapter.smarter.Atom.isValidSym1(d)&&(this.elementSymbol=""+d)}}return this.elementSymbol});c$.isValidSym1=c(c$,"isValidSym1",function(a){return"A"<=
a&&"Z">=a&&0>J.adapter.smarter.Atom.elementCharMasks[a.charCodeAt(0)-65]},"~S");c$.isValidSym2=c(c$,"isValidSym2",function(a,b){return"A"<=a&&"Z">=a&&"a"<=b&&"z">=b&&0!=(J.adapter.smarter.Atom.elementCharMasks[a.charCodeAt(0)-65]>>b.charCodeAt(0)-97&1)},"~S,~S");c$.isValidSymNoCase=c(c$,"isValidSymNoCase",function(a,b){return J.adapter.smarter.Atom.isValidSym2(a,"a">b?String.fromCharCode(b.charCodeAt(0)+32):b)},"~S,~S");c$.isValidSymChar1=c(c$,"isValidSymChar1",function(a){return"A"<=a&&"Z">=a&&0!=
J.adapter.smarter.Atom.elementCharMasks[a.charCodeAt(0)-65]},"~S");C(c$,"elementCharMasks",[1972292,-2147351151,-2146019271,-2130706430,1441792,-2147348464,25,-2147205008,-2147344384,0,-2147352576,1179905,548936,-2147434213,-2147221504,-2145759221,0,1056947,-2147339946,-2147477097,-2147483648,-2147483648,-2147483648,8388624,-2147483646,139264])}),u("J.adapter.smarter"),v(["J.api.JmolAdapterAtomIterator"],"J.adapter.smarter.AtomIterator",["java.lang.Float","J.api.JmolAdapter"],function(){c$=s(function(){this.iatom=
0;this.atom=null;this.ac=0;this.bsAtoms=this.atoms=null;p(this,arguments)},J.adapter.smarter,"AtomIterator",null,J.api.JmolAdapterAtomIterator);t(c$,function(a){this.ac=a.ac;this.atoms=a.atoms;this.bsAtoms=a.bsAtoms;this.iatom=0},"J.adapter.smarter.AtomSetCollection");j(c$,"hasNext",function(){if(this.iatom==this.ac)return!1;for(;null==(this.atom=this.atoms[this.iatom++])||null!=this.bsAtoms&&!this.bsAtoms.get(this.atom.index);)if(this.iatom==this.ac)return!1;this.atoms[this.iatom-1]=null;return!0});
j(c$,"getAtomSetIndex",function(){return this.atom.atomSetIndex});j(c$,"getSymmetry",function(){return this.atom.bsSymmetry});j(c$,"getAtomSite",function(){return this.atom.atomSite+1});j(c$,"getUniqueID",function(){return Integer.$valueOf(this.atom.index)});j(c$,"getElementNumber",function(){return 0<this.atom.elementNumber?this.atom.elementNumber:J.api.JmolAdapter.getElementNumber(this.atom.getElementSymbol())});j(c$,"getAtomName",function(){return this.atom.atomName});j(c$,"getFormalCharge",function(){return this.atom.formalCharge});
j(c$,"getPartialCharge",function(){return this.atom.partialCharge});j(c$,"getTensors",function(){return this.atom.tensors});j(c$,"getRadius",function(){return this.atom.radius});j(c$,"getVib",function(){return null==this.atom.vib||Float.isNaN(this.atom.vib.z)?null:this.atom.vib});j(c$,"getSeqID",function(){return null==this.atom.vib||!Float.isNaN(this.atom.vib.y)||1095761940!=this.atom.vib.z?0:z(this.atom.vib.x)});j(c$,"getBfactor",function(){return this.atom.bfactor});j(c$,"getOccupancy",function(){return 100*
this.atom.foccupancy});j(c$,"getIsHetero",function(){return this.atom.isHetero});j(c$,"getSerial",function(){return this.atom.atomSerial});j(c$,"getChainID",function(){return this.atom.chainID});j(c$,"getAltLoc",function(){return J.api.JmolAdapter.canonizeAlternateLocationID(this.atom.altLoc)});j(c$,"getGroup3",function(){return this.atom.group3});j(c$,"getSequenceNumber",function(){return this.atom.sequenceNumber});j(c$,"getInsertionCode",function(){return J.api.JmolAdapter.canonizeInsertionCode(this.atom.insertionCode)});
j(c$,"getXYZ",function(){return this.atom})}),u("J.adapter.smarter"),v(["java.util.Hashtable"],"J.adapter.smarter.AtomSetCollection","java.lang.Boolean $.Float java.util.Collections $.Properties JU.AU $.BS $.Lst $.P3 $.V3 J.adapter.smarter.Atom $.Bond $.SmarterJmolAdapter J.api.Interface JU.Logger".split(" "),function(){c$=s(function(){this.atoms=this.atomSetInfo=this.collectionName=this.fileTypeName=this.bsAtoms=this.reader=null;this.ac=0;this.bonds=null;this.bondCount=0;this.structures=null;this.atomSetCount=
this.structureCount=0;this.iSet=-1;this.errorMessage=this.atomSetAuxiliaryInfo=this.atomSetBondCounts=this.atomSetAtomCounts=this.atomSetAtomIndexes=this.atomSetNumbers=null;this.isTrajectory=this.coordinatesAreFractional=!1;this.trajectoryStepCount=0;this.trajectoryNames=this.vibrationSteps=this.trajectorySteps=null;this.allowMultiple=this.doFixPeriodic=!1;this.bsStructuredModels=this.readerList=null;this.haveAnisou=!1;this.baseSymmetryAtomCount=0;this.checkLatticeOnly=!1;this.xtalSymmetry=null;
this.bondIndex0=0;this.checkSpecial=!0;this.atomSymbolicMap=null;this.haveUnitCell=!1;this.vibScale=0;p(this,arguments)},J.adapter.smarter,"AtomSetCollection");N(c$,function(){this.atomSetInfo=new java.util.Hashtable;this.atoms=Array(256);this.bonds=Array(256);this.structures=Array(16);this.atomSetNumbers=E(16,0);this.atomSetAtomIndexes=E(16,0);this.atomSetAtomCounts=E(16,0);this.atomSetBondCounts=E(16,0);this.atomSetAuxiliaryInfo=Array(16);this.atomSymbolicMap=new java.util.Hashtable});c(c$,"setCollectionName",
function(a){if(!(null==a||0==(a=a.trim()).length))this.collectionName=a},"~S");c(c$,"clearGlobalBoolean",function(a){this.atomSetInfo.remove(J.adapter.smarter.AtomSetCollection.globalBooleans[a])},"~N");c(c$,"setGlobalBoolean",function(a){this.setInfo(J.adapter.smarter.AtomSetCollection.globalBooleans[a],Boolean.TRUE)},"~N");c(c$,"getGlobalBoolean",function(a){return this.atomSetInfo.get(J.adapter.smarter.AtomSetCollection.globalBooleans[a])===Boolean.TRUE},"~N");t(c$,function(a,b,d,f){this.fileTypeName=
a;this.reader=b;this.allowMultiple=null==b||0>b.desiredVibrationNumber;a=new java.util.Properties;a.put("PATH_KEY",".PATH");a.put("PATH_SEPARATOR",J.adapter.smarter.SmarterJmolAdapter.PATH_SEPARATOR);this.setInfo("properties",a);if(null!=d){f=0;this.readerList=new JU.Lst;for(a=0;a<d.length;a++)(0<d[a].ac||null!=d[a].reader&&d[a].reader.mustFinalizeModelSet)&&this.appendAtomSetCollection(f++,d[a]);1<f&&this.setInfo("isMultiFile",Boolean.TRUE)}else null!=f&&(this.setInfo("isMultiFile",Boolean.TRUE),
this.appendAtomSetCollectionList(f))},"~S,J.adapter.smarter.AtomSetCollectionReader,~A,JU.Lst");c(c$,"appendAtomSetCollectionList",function(a){var b=a.size();if(0==b)this.errorMessage="No file found!";else for(var d=0;d<b;d++){var f=a.get(d);q(f,JU.Lst)?this.appendAtomSetCollectionList(f):this.appendAtomSetCollection(d,f)}},"JU.Lst");c(c$,"setTrajectory",function(){this.isTrajectory||(this.trajectorySteps=new JU.Lst);this.isTrajectory=!0;var a=null==this.bsAtoms?this.ac:this.bsAtoms.cardinality();
if(0!=a){for(var b=Array(a),d=0<a&&null!=this.atoms[0].vib&&!Float.isNaN(this.atoms[0].vib.z),a=d?Array(a):null,f=0==this.trajectoryStepCount?null:this.trajectorySteps.get(this.trajectoryStepCount-1),c=0,e=0;c<this.ac;c++)if(null==this.bsAtoms||this.bsAtoms.get(c)){var h=JU.P3.newP(this.atoms[c]);this.doFixPeriodic&&null!=f&&(h=J.adapter.smarter.AtomSetCollection.fixPeriodic(h,f[c]));b[e]=h;d&&(a[e]=this.atoms[c].vib);e++}if(d){if(null==this.vibrationSteps){this.vibrationSteps=new JU.Lst;for(c=0;c<
this.trajectoryStepCount;c++)this.vibrationSteps.addLast(null)}this.vibrationSteps.addLast(a)}this.trajectorySteps.addLast(b);this.trajectoryStepCount++}});c(c$,"appendAtomSetCollection",function(a,b){null!=b.reader&&b.reader.mustFinalizeModelSet&&this.readerList.addLast(b.reader);var d=this.ac;this.setInfo("loadState",b.atomSetInfo.get("loadState"));if(null!=b.bsAtoms){null==this.bsAtoms&&(this.bsAtoms=new JU.BS);for(var f=b.bsAtoms.nextSetBit(0);0<=f;f=b.bsAtoms.nextSetBit(f+1))this.bsAtoms.set(d+
f)}for(var f=0,c=this.atomSetCount,e=0;e<b.atomSetCount;e++){this.newAtomSet();var h=(this.atomSetAuxiliaryInfo[this.iSet]=b.atomSetAuxiliaryInfo[e]).get("PDB_CONECT_firstAtom_count_max");null!=h&&(h[0]+=d);this.setCurrentModelInfo("title",b.collectionName);this.setAtomSetName(b.getAtomSetName(e));for(h=0;h<b.atomSetAtomCounts[e];h++){try{null!=this.bsAtoms&&this.bsAtoms.set(this.ac),this.newCloneAtom(b.atoms[f])}catch(l){if(B(l,Exception))this.errorMessage="appendAtomCollection error: "+l;else throw l;
}f++}this.atomSetNumbers[this.iSet]=0>a?this.iSet+1:1E6*(a+1)+b.atomSetNumbers[e]}for(f=0;f<b.bondCount;f++)e=b.bonds[f],this.addNewBondWithOrder(e.atomIndex1+d,e.atomIndex2+d,e.order);for(f=J.adapter.smarter.AtomSetCollection.globalBooleans.length;0<=--f;)b.getGlobalBoolean(f)&&this.setGlobalBoolean(f);for(f=0;f<b.structureCount;f++)d=b.structures[f],this.addStructure(d),d.modelStartEnd[0]+=c,d.modelStartEnd[1]+=c},"~N,J.adapter.smarter.AtomSetCollection");c(c$,"setNoAutoBond",function(){this.setInfo("noAutoBond",
Boolean.TRUE)});c(c$,"freeze",function(a){1==this.atomSetCount&&null==this.collectionName&&(this.collectionName=this.getAtomSetAuxiliaryInfoValue(0,"name"));a&&this.reverseAtomSets();1<this.trajectoryStepCount&&this.finalizeTrajectory();this.getList(!0);this.getList(!1);for(a=0;a<this.atomSetCount;a++)this.setModelInfoForSet("initialAtomCount",Integer.$valueOf(this.atomSetAtomCounts[a]),a),this.setModelInfoForSet("initialBondCount",Integer.$valueOf(this.atomSetBondCounts[a]),a)},"~B");c(c$,"reverseAtomSets",
function(){this.reverseArray(this.atomSetAtomIndexes);this.reverseArray(this.atomSetNumbers);this.reverseArray(this.atomSetAtomCounts);this.reverseArray(this.atomSetBondCounts);J.adapter.smarter.AtomSetCollection.reverseList(this.trajectorySteps);J.adapter.smarter.AtomSetCollection.reverseList(this.trajectoryNames);J.adapter.smarter.AtomSetCollection.reverseList(this.vibrationSteps);this.reverseObject(this.atomSetAuxiliaryInfo);for(var a=0;a<this.ac;a++)this.atoms[a].atomSetIndex=this.atomSetCount-
1-this.atoms[a].atomSetIndex;for(a=0;a<this.structureCount;a++){var b=this.structures[a].modelStartEnd[0];0<=b&&(this.structures[a].modelStartEnd[0]=this.atomSetCount-1-this.structures[a].modelStartEnd[1],this.structures[a].modelStartEnd[1]=this.atomSetCount-1-b)}for(a=0;a<this.bondCount;a++)this.bonds[a].atomSetIndex=this.atomSetCount-1-this.atoms[this.bonds[a].atomIndex1].atomSetIndex;this.reverseSets(this.bonds,this.bondCount);for(var d=JU.AU.createArrayOfArrayList(this.atomSetCount),a=0;a<this.atomSetCount;a++)d[a]=
new JU.Lst;for(a=0;a<this.ac;a++)d[this.atoms[a].atomSetIndex].addLast(this.atoms[a]);for(var b=E(this.ac,0),f=this.ac,a=this.atomSetCount;0<=--a;)for(var c=d[a].size();0<=--c;){var e=this.atoms[--f]=d[a].get(c);b[e.index]=f;e.index=f}for(a=0;a<this.bondCount;a++)this.bonds[a].atomIndex1=b[this.bonds[a].atomIndex1],this.bonds[a].atomIndex2=b[this.bonds[a].atomIndex2];for(a=0;a<this.atomSetCount;a++)d=this.getAtomSetAuxiliaryInfoValue(a,"PDB_CONECT_firstAtom_count_max"),null!=d&&(d[0]=b[d[0]],d[1]=
this.atomSetAtomCounts[a])});c(c$,"reverseSets",function(a,b){for(var d=JU.AU.createArrayOfArrayList(this.atomSetCount),f=0;f<this.atomSetCount;f++)d[f]=new JU.Lst;for(f=0;f<b;f++){if(0>a[f].atomSetIndex)return;d[a[f].atomSetIndex].addLast(a[f])}for(f=this.atomSetCount;0<=--f;)for(var c=d[f].size();0<=--c;)a[--b]=d[f].get(c)},"~A,~N");c(c$,"reverseObject",function(a){for(var b=this.atomSetCount,d=x(b/2);0<=--d;)JU.AU.swap(a,d,b-1-d)},"~A");c$.reverseList=c(c$,"reverseList",function(a){null!=a&&java.util.Collections.reverse(a)},
"JU.Lst");c(c$,"reverseArray",function(a){for(var b=this.atomSetCount,d=x(b/2);0<=--d;)JU.AU.swapInt(a,d,b-1-d)},"~A");c(c$,"getList",function(a){var b;for(b=this.ac;0<=--b&&!(null!=this.atoms[b]&&"\x00"!=(a?this.atoms[b].altLoc:this.atoms[b].insertionCode)););if(!(0>b)){var d=Array(this.atomSetCount);for(b=0;b<this.atomSetCount;b++)d[b]="";var f;for(b=0;b<this.ac;b++)if(null!=this.atoms[b]){var c=a?this.atoms[b].altLoc:this.atoms[b].insertionCode;if("\x00"!=c&&0>d[f=this.atoms[b].atomSetIndex].indexOf(c))d[f]+=
c}a=a?"altLocs":"insertionCodes";for(b=0;b<this.atomSetCount;b++)0<d[b].length&&this.setModelInfoForSet(a,d[b],b)}},"~B");c(c$,"finish",function(){if(null!=this.reader)this.reader.finalizeModelSet();else if(null!=this.readerList)for(var a=0;a<this.readerList.size();a++)this.readerList.get(a).finalizeModelSet();this.atoms=null;this.atomSetAtomCounts=E(16,0);this.atomSetAuxiliaryInfo=Array(16);this.atomSetInfo=new java.util.Hashtable;this.atomSetCount=0;this.atomSetNumbers=E(16,0);this.atomSymbolicMap=
new java.util.Hashtable;this.bonds=null;this.iSet=-1;this.xtalSymmetry=this.readerList=null;this.structures=Array(16);this.structureCount=0;this.vibrationSteps=this.trajectorySteps=null});c(c$,"discardPreviousAtoms",function(){for(var a=this.ac;0<=--a;)this.atoms[a]=null;this.ac=0;this.atomSymbolicMap.clear();this.atomSetCount=0;this.iSet=-1;for(a=this.atomSetAuxiliaryInfo.length;0<=--a;)this.atomSetAtomCounts[a]=0,this.atomSetBondCounts[a]=0,this.atomSetAuxiliaryInfo[a]=null});c(c$,"removeAtomSet",
function(a){null==this.bsAtoms&&(this.bsAtoms=new JU.BS,this.bsAtoms.setBits(0,this.ac));var b=this.atomSetAtomIndexes[a],d=b+this.atomSetAtomCounts[a];this.bsAtoms.clearBits(b,d);for(b=d;b<this.ac;b++)this.atoms[b].atomSetIndex--;for(b=a+1;b<this.atomSetCount;b++)this.atomSetAuxiliaryInfo[b-1]=this.atomSetAuxiliaryInfo[b],this.atomSetAtomIndexes[b-1]=this.atomSetAtomIndexes[b],this.atomSetBondCounts[b-1]=this.atomSetBondCounts[b],this.atomSetAtomCounts[b-1]=this.atomSetAtomCounts[b],this.atomSetNumbers[b-
1]=this.atomSetNumbers[b];for(b=d=0;b<this.structureCount;b++){var f=this.structures[b];f.modelStartEnd[0]==a&&f.modelStartEnd[1]==a&&(this.structures[b]=null,d++)}if(0<d){a=Array(this.structureCount-d);for(d=b=0;b<this.structureCount;b++)null!=this.structures[b]&&(a[d++]=this.structures[b]);this.structures=a}for(b=0;b<this.bondCount;b++)this.bonds[b].atomSetIndex=this.atoms[this.bonds[b].atomIndex1].atomSetIndex;this.atomSetAuxiliaryInfo[--this.atomSetCount]=null},"~N");c(c$,"removeCurrentAtomSet",
function(){0>this.iSet||(this.iSet--,this.atomSetCount--)});c(c$,"getHydrogenAtomCount",function(){for(var a=0,b=0;b<this.ac;b++)(1==this.atoms[b].elementNumber||this.atoms[b].elementSymbol.equals("H"))&&a++;return a});c(c$,"newCloneAtom",function(a){a=a.getClone();this.addAtom(a);return a},"J.adapter.smarter.Atom");c(c$,"cloneFirstAtomSet",function(a){if(!this.allowMultiple)return 0;this.newAtomSet();0==a&&(a=this.atomSetAtomCounts[0]);for(var b=0;b<a;++b)this.newCloneAtom(this.atoms[b]);return this.ac},
"~N");c(c$,"cloneAtomSetWithBonds",function(a){var b=this.atomSetBondCounts[a?this.iSet:0];a=a?this.cloneLastAtomSet():this.cloneFirstAtomSet(0);if(0<a)for(var d=0;d<b;d++){var f=this.bonds[this.bondCount-b];this.addNewBondWithOrder(f.atomIndex1+a,f.atomIndex2+a,f.order)}},"~B");c(c$,"cloneLastAtomSet",function(){return this.cloneLastAtomSetFromPoints(0,null)});c(c$,"cloneLastAtomSetFromPoints",function(a,b){if(!this.allowMultiple)return 0;var d=0<a?a:this.getLastAtomSetAtomCount(),f=this.getLastAtomSetAtomIndex();
this.newAtomSet();for(var c=0;c<d;++c){var e=this.newCloneAtom(this.atoms[f++]);null!=b&&e.setT(b[c])}return d},"~N,~A");c(c$,"getLastAtomSetAtomCount",function(){return this.atomSetAtomCounts[this.iSet]});c(c$,"getLastAtomSetAtomIndex",function(){return this.ac-this.atomSetAtomCounts[this.iSet]});c(c$,"addNewAtom",function(){return this.addAtom(new J.adapter.smarter.Atom)});c(c$,"addAtom",function(a){this.ac==this.atoms.length&&(this.atoms=2E5<this.ac?JU.AU.ensureLength(this.atoms,this.ac+5E4):JU.AU.doubleLength(this.atoms));
0==this.atomSetCount&&this.newAtomSet();a.index=this.ac;this.atoms[this.ac++]=a;a.atomSetIndex=this.iSet;a.atomSite=this.atomSetAtomCounts[this.iSet]++;return a},"J.adapter.smarter.Atom");c(c$,"addAtomWithMappedName",function(a){var b=this.addAtom(a).atomName;null!=b&&this.atomSymbolicMap.put(b,a)},"J.adapter.smarter.Atom");c(c$,"addAtomWithMappedSerialNumber",function(a){var b=this.addAtom(a).atomSerial;-2147483648!=b&&this.atomSymbolicMap.put(""+b,a)},"J.adapter.smarter.Atom");c(c$,"getAtomFromName",
function(a){return this.atomSymbolicMap.get(a)},"~S");c(c$,"getAtomIndex",function(a){a=this.atomSymbolicMap.get(a);return null==a?-1:a.index},"~S");c(c$,"addNewBondWithOrder",function(a,b,d){if(0>a||a>=this.ac||0>b||b>=this.ac)return null;a=new J.adapter.smarter.Bond(a,b,d);this.addBond(a);return a},"~N,~N,~N");c(c$,"addNewBondFromNames",function(a,b,d){return this.addNewBondWithOrderA(this.getAtomFromName(a),this.getAtomFromName(b),d)},"~S,~S,~N");c(c$,"addNewBondWithOrderA",function(a,b,d){return null==
a||null==b?null:this.addNewBondWithOrder(a.index,b.index,d)},"J.adapter.smarter.Atom,J.adapter.smarter.Atom,~N");c(c$,"addBond",function(a){0<this.trajectoryStepCount||(0>a.atomIndex1||0>a.atomIndex2||0>a.order||this.atoms[a.atomIndex1].atomSetIndex!=this.atoms[a.atomIndex2].atomSetIndex?JU.Logger.debugging&&JU.Logger.debug(">>>>>>BAD BOND:"+a.atomIndex1+"-"+a.atomIndex2+" order="+a.order):(this.bondCount==this.bonds.length&&(this.bonds=JU.AU.arrayCopyObject(this.bonds,this.bondCount+1024)),this.bonds[this.bondCount++]=
a,this.atomSetBondCounts[this.iSet]++))},"J.adapter.smarter.Bond");c(c$,"finalizeStructures",function(){if(0!=this.structureCount){this.bsStructuredModels=new JU.BS;for(var a=new java.util.Hashtable,b=0;b<this.structureCount;b++){var d=this.structures[b];-1==d.modelStartEnd[0]&&(d.modelStartEnd[0]=0,d.modelStartEnd[1]=this.atomSetCount-1);this.bsStructuredModels.setBits(d.modelStartEnd[0],d.modelStartEnd[1]+1);if(0!=d.strandCount){var d=d.structureID+" "+d.modelStartEnd[0],f=a.get(d),f=(null==f?0:
f.intValue())+1;a.put(d,Integer.$valueOf(f))}}for(b=0;b<this.structureCount;b++)d=this.structures[b],1==d.strandCount&&(d.strandCount=a.get(d.structureID+" "+d.modelStartEnd[0]).intValue())}});c(c$,"addStructure",function(a){this.structureCount==this.structures.length&&(this.structures=JU.AU.arrayCopyObject(this.structures,this.structureCount+32));this.structures[this.structureCount++]=a},"J.adapter.smarter.Structure");c(c$,"addVibrationVectorWithSymmetry",function(a,b,d,f,c){if(c){c=this.atoms[a].atomSite;
for(var e=this.atoms[a].atomSetIndex;a<this.ac&&this.atoms[a].atomSetIndex==e;a++)this.atoms[a].atomSite==c&&this.addVibrationVector(a,b,d,f)}else this.addVibrationVector(a,b,d,f)},"~N,~N,~N,~N,~B");c(c$,"addVibrationVector",function(a,b,d,f){this.allowMultiple||(a%=this.ac);return this.atoms[a].vib=JU.V3.new3(b,d,f)},"~N,~N,~N,~N");c(c$,"setCoordinatesAreFractional",function(a){this.coordinatesAreFractional=a;this.setCurrentModelInfo("coordinatesAreFractional",Boolean.$valueOf(a));a&&this.setGlobalBoolean(0)},
"~B");c(c$,"setAnisoBorU",function(a,b,d){this.haveAnisou=!0;a.anisoBorU=b;b[6]=d},"J.adapter.smarter.Atom,~A,~N");c(c$,"setU",function(a,b,d){var f=a.anisoBorU;null==f&&this.setAnisoBorU(a,f=M(8,0),8);f[b]=d},"J.adapter.smarter.Atom,~N,~N");c(c$,"getXSymmetry",function(){null==this.xtalSymmetry&&(this.xtalSymmetry=J.api.Interface.getOption("adapter.smarter.XtalSymmetry",this.reader.vwr,"file").set(this.reader));return this.xtalSymmetry});c(c$,"getSymmetry",function(){return this.getXSymmetry().getSymmetry()});
c(c$,"setSymmetry",function(a){return null==a?null:this.getXSymmetry().setSymmetry(a)},"J.api.SymmetryInterface");c(c$,"setTensors",function(){this.haveAnisou&&this.getXSymmetry().setTensors()});c(c$,"setInfo",function(a,b){null==b?this.atomSetInfo.remove(a):this.atomSetInfo.put(a,b)},"~S,~O");c(c$,"setAtomSetCollectionPartialCharges",function(a){if(!this.atomSetInfo.containsKey(a))return!1;for(var b=this.atomSetInfo.get(a),d=b.size();0<=--d;)this.atoms[d].partialCharge=b.get(d).floatValue();JU.Logger.info("Setting partial charges type "+
a);return!0},"~S");c(c$,"mapPartialCharge",function(a,b){this.getAtomFromName(a).partialCharge=b},"~S,~N");c$.fixPeriodic=c(c$,"fixPeriodic",function(a,b){a.x=J.adapter.smarter.AtomSetCollection.fixPoint(a.x,b.x);a.y=J.adapter.smarter.AtomSetCollection.fixPoint(a.y,b.y);a.z=J.adapter.smarter.AtomSetCollection.fixPoint(a.z,b.z);return a},"JU.P3,JU.P3");c$.fixPoint=c(c$,"fixPoint",function(a,b){for(;0.9<a-b;)a-=1;for(;-0.9>a-b;)a+=1;return a},"~N,~N");c(c$,"finalizeTrajectoryAs",function(a,b){this.trajectorySteps=
a;this.vibrationSteps=b;this.trajectoryStepCount=a.size();this.finalizeTrajectory()},"JU.Lst,JU.Lst");c(c$,"finalizeTrajectory",function(){if(0!=this.trajectoryStepCount){var a=this.trajectorySteps.get(0),b=null==this.vibrationSteps?null:this.vibrationSteps.get(0),d=null==this.bsAtoms?this.ac:this.bsAtoms.cardinality();if(null!=this.vibrationSteps&&null!=b&&b.length<d||a.length<d)this.errorMessage="File cannot be loaded as a trajectory";else{for(var d=new JU.V3,f=0,c=0;f<this.ac;f++)if(null==this.bsAtoms||
this.bsAtoms.get(f))null!=this.vibrationSteps&&(this.atoms[f].vib=null==b?d:b[c]),null!=a[c]&&this.atoms[f].setT(a[c]),c++;this.setInfo("trajectorySteps",this.trajectorySteps);null!=this.vibrationSteps&&this.setInfo("vibrationSteps",this.vibrationSteps)}}});c(c$,"newAtomSet",function(){this.newAtomSetClear(!0)});c(c$,"newAtomSetClear",function(a){!this.allowMultiple&&0<=this.iSet&&this.discardPreviousAtoms();this.bondIndex0=this.bondCount;this.isTrajectory&&this.discardPreviousAtoms();this.iSet=this.atomSetCount++;
this.atomSetCount>this.atomSetNumbers.length&&(this.atomSetAtomIndexes=JU.AU.doubleLengthI(this.atomSetAtomIndexes),this.atomSetAtomCounts=JU.AU.doubleLengthI(this.atomSetAtomCounts),this.atomSetBondCounts=JU.AU.doubleLengthI(this.atomSetBondCounts),this.atomSetAuxiliaryInfo=JU.AU.doubleLength(this.atomSetAuxiliaryInfo));this.atomSetAtomIndexes[this.iSet]=this.ac;this.atomSetCount+this.trajectoryStepCount>this.atomSetNumbers.length&&(this.atomSetNumbers=JU.AU.doubleLengthI(this.atomSetNumbers));this.isTrajectory?
this.atomSetNumbers[this.iSet+this.trajectoryStepCount]=this.atomSetCount+this.trajectoryStepCount:this.atomSetNumbers[this.iSet]=this.atomSetCount;a&&this.atomSymbolicMap.clear();this.setCurrentModelInfo("title",this.collectionName)},"~B");c(c$,"getAtomSetAtomIndex",function(a){return this.atomSetAtomIndexes[a]},"~N");c(c$,"getAtomSetAtomCount",function(a){return this.atomSetAtomCounts[a]},"~N");c(c$,"getAtomSetBondCount",function(a){return this.atomSetBondCounts[a]},"~N");c(c$,"setAtomSetName",
function(a){this.isTrajectory?this.setTrajectoryName(a):(this.setModelInfoForSet("name",a,this.iSet),this.allowMultiple||this.setCollectionName(a))},"~S");c(c$,"setTrajectoryName",function(a){if(0!=this.trajectoryStepCount){null==this.trajectoryNames&&(this.trajectoryNames=new JU.Lst);for(var b=this.trajectoryNames.size();b<this.trajectoryStepCount;b++)this.trajectoryNames.addLast(null);this.trajectoryNames.set(this.trajectoryStepCount-1,a)}},"~S");c(c$,"setAtomSetNames",function(a,b,d){for(var f=
this.iSet;0<=--b&&0<=f;--f)(null==d||!d.get(f))&&this.setModelInfoForSet("name",a,f)},"~S,~N,JU.BS");c(c$,"setCurrentAtomSetNumber",function(a){this.setAtomSetNumber(this.iSet+(this.isTrajectory?this.trajectoryStepCount:0),a)},"~N");c(c$,"setAtomSetNumber",function(a,b){this.atomSetNumbers[a]=b},"~N,~N");c(c$,"setAtomSetModelProperty",function(a,b){this.setAtomSetModelPropertyForSet(a,b,this.iSet)},"~S,~S");c(c$,"setAtomSetModelPropertyForSet",function(a,b,d){var f=this.getAtomSetAuxiliaryInfoValue(d,
"modelProperties");null==f&&this.setModelInfoForSet("modelProperties",f=new java.util.Properties,d);f.put(a,b);a.startsWith(".")&&f.put(a.substring(1),b)},"~S,~S,~N");c(c$,"setAtomProperties",function(a,b,d){q(b,String)&&!b.endsWith("\n")&&(b+="\n");0>d&&(d=this.iSet);var f=this.getAtomSetAuxiliaryInfoValue(d,"atomProperties");null==f&&this.setModelInfoForSet("atomProperties",f=new java.util.Hashtable,d);f.put(a,b)},"~S,~O,~N,~B");c(c$,"setAtomSetPartialCharges",function(a){if(!this.atomSetAuxiliaryInfo[this.iSet].containsKey(a))return!1;
a=this.getAtomSetAuxiliaryInfoValue(this.iSet,a);for(var b=a.size();0<=--b;)this.atoms[b].partialCharge=a.get(b).floatValue();return!0},"~S");c(c$,"getAtomSetAuxiliaryInfoValue",function(a,b){return this.atomSetAuxiliaryInfo[0<=a?a:this.iSet].get(b)},"~N,~S");c(c$,"setCurrentModelInfo",function(a,b){this.setModelInfoForSet(a,b,this.iSet)},"~S,~O");c(c$,"setModelInfoForSet",function(a,b,d){0>d||(null==this.atomSetAuxiliaryInfo[d]&&(this.atomSetAuxiliaryInfo[d]=new java.util.Hashtable),null==b?this.atomSetAuxiliaryInfo[d].remove(a):
this.atomSetAuxiliaryInfo[d].put(a,b))},"~S,~O,~N");c(c$,"setAtomSetPropertyForSets",function(a,b,d){for(var f=this.iSet;0<=--d&&0<=f;--f)this.setAtomSetModelPropertyForSet(a,b,f)},"~S,~S,~N");c(c$,"getAtomSetNumber",function(a){return this.atomSetNumbers[a>=this.atomSetCount?0:a]},"~N");c(c$,"getAtomSetName",function(a){if(null!=this.trajectoryNames&&a<this.trajectoryNames.size())return this.trajectoryNames.get(a);a>=this.atomSetCount&&(a=this.atomSetCount-1);return this.getAtomSetAuxiliaryInfoValue(a,
"name")},"~N");c(c$,"getAtomSetAuxiliaryInfo",function(a){a=a>=this.atomSetCount?this.atomSetCount-1:a;return 0>a?null:this.atomSetAuxiliaryInfo[a]},"~N");c(c$,"setAtomSetEnergy",function(a,b){0>this.iSet||(JU.Logger.info("Energy for model "+(this.iSet+1)+" = "+a),this.setCurrentModelInfo("EnergyString",a),this.setCurrentModelInfo("Energy",Float.$valueOf(b)),this.setAtomSetModelProperty("Energy",""+b))},"~S,~N");c(c$,"setAtomSetFrequency",function(a,b,d,f){this.setAtomSetModelProperty("FreqValue",
d);d+=" "+(null==f?"cm^-1":f);f=(null==b?"":b+" ")+d;this.setAtomSetName(f);this.setAtomSetModelProperty("Frequency",d);null!=b&&this.setAtomSetModelProperty("FrequencyLabel",b);this.setAtomSetModelProperty(".PATH",(null==a?"":a+J.adapter.smarter.SmarterJmolAdapter.PATH_SEPARATOR+"Frequencies")+"Frequencies");return f},"~S,~S,~S,~S");c(c$,"getBondList",function(){for(var a=Array(this.bondCount),b=0;b<this.bondCount;b++)a[b]=[this.atoms[this.bonds[b].atomIndex1].atomName,this.atoms[this.bonds[b].atomIndex2].atomName,
""+this.bonds[b].order];return a});c(c$,"centralize",function(){for(var a=new JU.P3,b=0;b<this.atomSetCount;b++){var d=this.atomSetAtomCounts[b],f=this.atomSetAtomIndexes[b];a.set(0,0,0);for(var c=f+d;--c>=f;)a.add(this.atoms[c]);a.scale(1/d);for(c=f+d;--c>=f;)this.atoms[c].sub(a)}});c(c$,"mergeTrajectories",function(a){if(this.isTrajectory&&a.isTrajectory&&null==this.vibrationSteps){for(var b=0;b<a.trajectoryStepCount;b++)this.trajectorySteps.add(this.trajectoryStepCount++,a.trajectorySteps.get(b));
this.setInfo("trajectorySteps",this.trajectorySteps)}},"J.adapter.smarter.AtomSetCollection");C(c$,"globalBooleans","someModelsHaveFractionalCoordinates someModelsHaveSymmetry someModelsHaveUnitcells someModelsHaveCONECT isPDB someModelsHaveDomains someModelsHaveValidations".split(" "),"GLOBAL_FRACTCOORD",0,"GLOBAL_SYMMETRY",1,"GLOBAL_UNITCELLS",2,"GLOBAL_CONECT",3,"GLOBAL_ISPDB",4,"GLOBAL_DOMAINS",5,"GLOBAL_VALIDATIONS",6)}),u("J.adapter.smarter"),v(["javajs.api.GenericLineReader","JU.SB"],"J.adapter.smarter.AtomSetCollectionReader",
"java.io.BufferedReader java.lang.Boolean $.Float $.NullPointerException javajs.api.GenericBinaryDocument JU.BS $.Lst $.M3 $.P3 $.PT $.Quat $.V3 J.adapter.smarter.Atom $.AtomSetCollection J.api.Interface $.JmolAdapter JU.BSUtil $.Logger $.Parser".split(" "),function(){c$=s(function(){this.isBinary=!1;this.validation=this.domains=this.trajectorySteps=this.htParams=this.readerName=this.binaryDoc=this.reader=this.asc=null;this.isConcatenated=!1;this.addedDataKey=this.addedData=null;this.fixJavaFloat=
!0;this.next=this.prevline=this.line=null;this.ptLine=0;this.latticeCells=null;this.iHaveSymmetryOperators=this.iHaveUnitCell=this.doProcessLines=!1;this.continuing=!0;this.vwr=null;this.isSequential=this.getHeader=this.doCheckUnitCell=this.applySymmetryToBonds=this.isTrajectory=this.ignoreFileSymmetryOperators=this.doApplySymmetry=!1;this.vibrationNumber=this.modelNumber=this.templateAtomCount=0;this.desiredVibrationNumber=-2147483648;this.bsModels=null;this.havePartialChargeFilter=!1;this.calculationType=
"?";this.sgName=null;this.ignoreFileSpaceGroupName=this.ignoreFileUnitCell=!1;this.notionalUnitCell=null;this.desiredModelNumber=-2147483648;this.out=this.symmetry=null;this.doPackUnitCell=this.iHaveFractionalCoordinates=!1;this.ptSupercell=null;this.forcePacked=this.mustFinalizeModelSet=!1;this.packingError=0.02;this.loadNote=null;this.merging=this.fileCoordinatesAreFractional=this.doConvertToFractional=!1;this.symmetryRange=0;this.firstLastStep=null;this.lastModelNumber=2147483647;this.desiredSpaceGroupIndex=
-1;this.unitCellOffset=this.fileOffsetFractional=this.fileOffset=this.fileScaling=null;this.unitCellOffsetFractional=!1;this.fileName=this.filePath=this.moreUnitCellInfo=null;this.stateScriptVersionInt=2147483647;this.baseAtomIndex=0;this.haveModel=this.isFinalized=!1;this.previousUnitCell=this.previousSpaceGroup=null;this.nMatrixElements=0;this.filter=this.bsFilter=this.matUnitCellOrientation=null;this.filterAtomType=this.filterAtomName=this.filterChain=this.filterGroup3=this.filterAltLoc=this.haveAtomFilter=
!1;this.filterAtomTypeStr=null;this.filterAtomNameTerminator=";";this.filterEveryNth=this.filterHetero=this.filterElement=!1;this.filterSymop=null;this.nFiltered=this.filterN=0;this.reverseModels=this.doReadMolecularOrbitals=this.allowPDBFilter=this.useAltNames=this.addVibrations=this.doCentralize=this.doSetOrientation=!1;this.nameRequired=null;this.centroidPacked=this.doCentroidUnitCell=!1;this.ms=this.matRot=this.filter2=this.filter1=this.strSupercell=null;this.vibsFractional=!1;this.siteScript=
this.previousScript=null;p(this,arguments)},J.adapter.smarter,"AtomSetCollectionReader",null,javajs.api.GenericLineReader);N(c$,function(){this.next=E(1,0);this.loadNote=new JU.SB});c(c$,"setup",function(a,b,d){this.setupASCR(a,b,d)},"~S,java.util.Map,~O");c(c$,"setupASCR",function(a,b,d){null!=a&&(this.htParams=b,this.filePath=a.$replace("\\","/"),a=this.filePath.lastIndexOf("/"),this.fileName=this.filePath.substring(a+1),q(d,java.io.BufferedReader)?this.reader=d:q(d,javajs.api.GenericBinaryDocument)&&
(this.binaryDoc=d))},"~S,java.util.Map,~O");c(c$,"readData",function(){this.initialize();this.asc=new J.adapter.smarter.AtomSetCollection(this.readerName,this,null,null);try{this.initializeReader();if(null==this.binaryDoc)for(null==this.line&&this.continuing&&this.rd();null!=this.line&&this.continuing;)this.checkLine()&&this.rd();else this.binaryDoc.setOutputChannel(this.out),this.processBinaryDocument();this.finalizeSubclassReader();this.isFinalized||this.finalizeReaderASCR()}catch(a){JU.Logger.info("Reader error: "+
a),this.vwr.isJS||a.printStackTrace(),this.setError(a)}null!=this.reader&&this.reader.close();null!=this.binaryDoc&&this.binaryDoc.close();return this.finish()});c(c$,"fixBaseIndices",function(){try{var a=this.htParams.get("baseModelIndex").intValue();this.baseAtomIndex+=this.asc.ac;a+=this.asc.atomSetCount;this.htParams.put("baseAtomIndex",Integer.$valueOf(this.baseAtomIndex));this.htParams.put("baseModelIndex",Integer.$valueOf(a))}catch(b){if(!B(b,Exception))throw b;}});c(c$,"readDataObject",function(a){this.initialize();
this.asc=new J.adapter.smarter.AtomSetCollection(this.readerName,this,null,null);this.initializeReader();this.processDOM(a);return this.finish()},"~O");c(c$,"processDOM",function(){},"~O");c(c$,"processBinaryDocument",function(){});c(c$,"initializeReader",function(){});c(c$,"checkLine",function(){return!0});c(c$,"checkLastModel",function(){if(this.isLastModel(this.modelNumber)&&this.doProcessLines)return this.continuing=this.doProcessLines=!1;this.doProcessLines=!1;return!0});c(c$,"isLastModel",function(a){return 0<
this.desiredModelNumber||a>=this.lastModelNumber},"~N");c(c$,"appendLoadNote",function(a){null==a?this.loadNote=new JU.SB:(this.loadNote.append(a).append("\n"),JU.Logger.info(a))},"~S");c(c$,"initializeTrajectoryFile",function(){this.asc.addAtom(new J.adapter.smarter.Atom);this.trajectorySteps=this.htParams.get("trajectorySteps");null==this.trajectorySteps&&this.htParams.put("trajectorySteps",this.trajectorySteps=new JU.Lst)});c(c$,"finalizeSubclassReader",function(){});c(c$,"finalizeReaderASCR",
function(){this.isFinalized=!0;if(0<this.asc.atomSetCount){this.applySymmetryAndSetTrajectory();this.asc.finalizeStructures();this.doCentralize&&this.asc.centralize();var a=this.asc.getAtomSetAuxiliaryInfo(0);if(null!=this.domains&&null!=a){this.asc.setGlobalBoolean(5);var b=this.domains.getMapKeys(2,!0),d=b.indexOf("{ ",2);0<=d&&(b=b.substring(d+2));d=b.indexOf("_metadata");0>d&&(d=b.indexOf("metadata"));0<=d&&(b=b.substring(0,d));b=JU.PT.rep(JU.PT.replaceAllCharacters(b,"{}","").trim(),"\n","\n  ")+
"\n\nUse SHOW DOMAINS for details.";this.appendLoadNote("\nDomains loaded:\n   "+b);for(b=this.asc.atomSetCount;0<=--b;)a=this.asc.getAtomSetAuxiliaryInfo(b),a.put("domains",this.domains)}if(null!=this.validation&&null!=a)for(b=this.asc.atomSetCount;0<=--b;)a=this.asc.getAtomSetAuxiliaryInfo(b),a.put("validation",this.validation)}this.fixJavaFloat||this.asc.setInfo("legacyJavaFloat",Boolean.TRUE);this.setLoadNote()});c(c$,"setLoadNote",function(){var a=this.loadNote.toString();0<this.loadNote.length()&&
this.asc.setInfo("modelLoadNote",a);return a});c(c$,"setIsPDB",function(){this.asc.setGlobalBoolean(4);null!=this.htParams.get("pdbNoHydrogens")&&this.asc.setInfo("pdbNoHydrogens",this.htParams.get("pdbNoHydrogens"));this.checkFilterKey("ADDHYDROGENS")&&this.asc.setInfo("pdbAddHydrogens",Boolean.TRUE)});c(c$,"setModelPDB",function(a){a?this.asc.setGlobalBoolean(4):this.asc.clearGlobalBoolean(4);this.asc.setCurrentModelInfo("isPDB",a?Boolean.TRUE:null)},"~B");c(c$,"finish",function(){var a=this.htParams.get("loadState");
this.asc.setInfo("loadState",null==a?"":a);a=this.htParams.get("smilesString");null!=a&&this.asc.setInfo("smilesString",a);this.htParams.containsKey("templateAtomCount")||this.htParams.put("templateAtomCount",Integer.$valueOf(this.asc.ac));this.htParams.containsKey("bsFilter")&&this.htParams.put("filteredAtomCount",Integer.$valueOf(JU.BSUtil.cardinalityOf(this.htParams.get("bsFilter"))));this.calculationType.equals("?")||this.asc.setInfo("calculationType",this.calculationType);var b=a=this.asc.fileTypeName;
0<=b.indexOf("(")&&(b=b.substring(0,b.indexOf("(")));for(var d=this.asc.atomSetCount;0<=--d;)this.asc.setModelInfoForSet("fileName",this.filePath,d),this.asc.setModelInfoForSet("fileType",b,d);this.asc.freeze(this.reverseModels);if(null!=this.asc.errorMessage)return this.asc.errorMessage+"\nfor file "+this.filePath+"\ntype "+a;if(0==(null==this.asc.bsAtoms?this.asc.ac:this.asc.bsAtoms.cardinality())&&0>b.indexOf("DataOnly")&&null==this.asc.atomSetInfo.get("dataOnly"))return"No atoms found\nfor file "+
this.filePath+"\ntype "+a;this.fixBaseIndices();return this.asc});c(c$,"setError",function(a){var b;b=a.getMessage?a.getMessage():a.toString();this.asc.errorMessage=null==this.line?"Error reading file at end of file \n"+b:"Error reading file at line "+this.ptLine+":\n"+this.line+"\n"+b;this.vwr.isJS||a.printStackTrace()},"Throwable");c(c$,"initialize",function(){this.htParams.containsKey("baseAtomIndex")&&(this.baseAtomIndex=this.htParams.get("baseAtomIndex").intValue());this.initializeSymmetry();
this.vwr=this.htParams.remove("vwr");this.htParams.containsKey("stateScriptVersionInt")&&(this.stateScriptVersionInt=this.htParams.get("stateScriptVersionInt").intValue());var a=this.htParams.get("packingError");null!=a?this.packingError=a.floatValue():null!=this.htParams.get("legacyJavaFloat")&&(this.fixJavaFloat=!1);this.merging=this.htParams.containsKey("merging");this.getHeader=this.htParams.containsKey("getHeader");this.isSequential=this.htParams.containsKey("isSequential");this.readerName=this.htParams.get("readerName");
this.htParams.containsKey("outputChannel")&&(this.out=this.htParams.get("outputChannel"));this.htParams.containsKey("vibrationNumber")?this.desiredVibrationNumber=this.htParams.get("vibrationNumber").intValue():this.htParams.containsKey("modelNumber")&&(this.desiredModelNumber=this.htParams.get("modelNumber").intValue());this.applySymmetryToBonds=this.htParams.containsKey("applySymmetryToBonds");this.bsFilter=this.htParams.get("bsFilter");this.setFilter(null);null!=this.strSupercell&&!this.checkFilterKey("NOPACK")&&
(this.forcePacked=!0);a=this.htParams.get("supercell");q(a,String)?this.strSupercell=a:this.ptSupercell=a;a=this.htParams.containsKey("ptFile")?this.htParams.get("ptFile").intValue():-1;this.isTrajectory=this.htParams.containsKey("isTrajectory");0<a&&this.htParams.containsKey("firstLastSteps")?(a=this.htParams.get("firstLastSteps").get(a-1),q(a,JU.BS)?this.bsModels=a:this.firstLastStep=a):this.htParams.containsKey("firstLastStep")?this.firstLastStep=this.htParams.get("firstLastStep"):this.htParams.containsKey("bsModels")&&
(this.bsModels=this.htParams.get("bsModels"));this.htParams.containsKey("templateAtomCount")&&(this.templateAtomCount=this.htParams.get("templateAtomCount").intValue());if(null!=this.bsModels||null!=this.firstLastStep)this.desiredModelNumber=-2147483648;if(null==this.bsModels&&null!=this.firstLastStep){0>this.firstLastStep[0]&&(this.firstLastStep[0]=0);if(0==this.firstLastStep[2]||this.firstLastStep[1]<this.firstLastStep[0])this.firstLastStep[1]=-1;1>this.firstLastStep[2]&&(this.firstLastStep[2]=
1);this.bsModels=JU.BSUtil.newAndSetBit(this.firstLastStep[0]);if(this.firstLastStep[1]>this.firstLastStep[0])for(a=this.firstLastStep[0];a<=this.firstLastStep[1];a+=this.firstLastStep[2])this.bsModels.set(a)}if(null!=this.bsModels&&(null==this.firstLastStep||-1!=this.firstLastStep[1]))this.lastModelNumber=this.bsModels.length();this.symmetryRange=this.htParams.containsKey("symmetryRange")?this.htParams.get("symmetryRange").floatValue():0;this.initializeSymmetryOptions();this.htParams.containsKey("spaceGroupIndex")&&
(this.desiredSpaceGroupIndex=this.htParams.get("spaceGroupIndex").intValue(),-2==this.desiredSpaceGroupIndex&&(this.sgName=this.htParams.get("spaceGroupName")),this.ignoreFileSpaceGroupName=-2==this.desiredSpaceGroupIndex||0<=this.desiredSpaceGroupIndex,this.ignoreFileSymmetryOperators=-1!=this.desiredSpaceGroupIndex);this.htParams.containsKey("unitCellOffset")&&(this.fileScaling=JU.P3.new3(1,1,1),this.fileOffset=this.htParams.get("unitCellOffset"),this.fileOffsetFractional=JU.P3.newP(this.fileOffset),
this.unitCellOffsetFractional=this.htParams.containsKey("unitCellOffsetFractional"));this.htParams.containsKey("unitcell")&&(a=this.htParams.get("unitcell"),this.merging&&this.setFractionalCoordinates(!0),9==a.length?(this.addPrimitiveLatticeVector(0,a,0),this.addPrimitiveLatticeVector(1,a,3),this.addPrimitiveLatticeVector(2,a,6)):this.setUnitCell(a[0],a[1],a[2],a[3],a[4],a[5]),this.ignoreFileUnitCell=this.iHaveUnitCell,this.merging&&!this.iHaveUnitCell&&this.setFractionalCoordinates(!1));this.domains=
this.htParams.get("domains");this.validation=this.htParams.get("validation");this.isConcatenated=this.htParams.containsKey("concatenate")});c(c$,"initializeSymmetryOptions",function(){this.latticeCells=E(3,0);this.doApplySymmetry=!1;var a=this.htParams.get("lattice");if(null==a||0==a.length()){if(!this.forcePacked&&null==this.strSupercell)return;a=JU.P3.new3(1,1,1)}this.latticeCells[0]=z(a.x);this.latticeCells[1]=z(a.y);this.latticeCells[2]=z(a.z);if((this.doCentroidUnitCell=this.htParams.containsKey("centroid"))&&
(-1==this.latticeCells[2]||0==this.latticeCells[2]))this.latticeCells[2]=1;a=this.forcePacked||this.htParams.containsKey("packed");this.centroidPacked=this.doCentroidUnitCell&&a;this.doPackUnitCell=!this.doCentroidUnitCell&&(a||0>this.latticeCells[2]);this.doApplySymmetry=0<this.latticeCells[0]&&0<this.latticeCells[1];this.doApplySymmetry||(this.latticeCells=E(3,0))});c(c$,"doGetModel",function(a,b){if(null!=b&&null!=this.nameRequired&&0<this.nameRequired.length&&0>b.toUpperCase().indexOf(this.nameRequired))return!1;
var d=null==this.bsModels?1>this.desiredModelNumber||a==this.desiredModelNumber:a>this.lastModelNumber?!1:0<a&&this.bsModels.get(a-1)||this.haveModel&&null!=this.firstLastStep&&0>this.firstLastStep[1]&&(2>this.firstLastStep[2]||0==(a-1-this.firstLastStep[0])%this.firstLastStep[2]);d&&0==this.desiredModelNumber&&this.asc.discardPreviousAtoms();this.haveModel=(new Boolean(this.haveModel|d)).valueOf();d&&(this.doProcessLines=!0);return d},"~N,~S");c(c$,"initializeSymmetry",function(){this.previousSpaceGroup=
this.sgName;this.previousUnitCell=this.notionalUnitCell;this.iHaveUnitCell=this.ignoreFileUnitCell;if(!this.ignoreFileUnitCell){this.notionalUnitCell=M(25,0);for(var a=25;0<=--a;)this.notionalUnitCell[a]=NaN;this.symmetry=null}this.ignoreFileSpaceGroupName||(this.sgName="unspecified!");this.doCheckUnitCell=!1});c(c$,"newAtomSet",function(a){0<=this.asc.iSet?(this.asc.newAtomSet(),this.asc.setCollectionName("<collection of "+(this.asc.iSet+1)+" models>")):this.asc.setCollectionName(a);this.asc.setModelInfoForSet("name",
a,Math.max(0,this.asc.iSet))},"~S");c(c$,"cloneLastAtomSet",function(a,b){var d=this.asc.getLastAtomSetAtomCount();this.asc.cloneLastAtomSetFromPoints(a,b);this.asc.haveUnitCell&&(this.doCheckUnitCell=this.iHaveUnitCell=!0,this.sgName=this.previousSpaceGroup,this.notionalUnitCell=this.previousUnitCell);return d},"~N,~A");c(c$,"setSpaceGroupName",function(a){this.ignoreFileSpaceGroupName||(this.sgName=a.trim(),JU.Logger.info("Setting space group name to "+this.sgName))},"~S");c(c$,"setSymmetryOperator",
function(a){if(this.ignoreFileSymmetryOperators)return-1;var b=this.asc.getXSymmetry().addSpaceGroupOperation(a,!0);0>b&&JU.Logger.warn("Skippings symmetry operation "+a);this.iHaveSymmetryOperators=!0;return b},"~S");c(c$,"initializeCartesianToFractional",function(){for(var a=0;16>a;a++)if(!Float.isNaN(this.notionalUnitCell[6+a]))return;for(a=0;16>a;a++)this.notionalUnitCell[6+a]=0==a%5?1:0;this.nMatrixElements=0});c(c$,"clearUnitCell",function(){if(!this.ignoreFileUnitCell){for(var a=6;22>a;a++)this.notionalUnitCell[a]=
NaN;this.checkUnitCell(6)}});c(c$,"setUnitCellItem",function(a,b){if(!this.ignoreFileUnitCell&&!(0==a&&1==b||3==a&&0==b))!Float.isNaN(b)&&(6<=a&&Float.isNaN(this.notionalUnitCell[6]))&&this.initializeCartesianToFractional(),this.notionalUnitCell[a]=b,JU.Logger.debugging&&JU.Logger.debug("setunitcellitem "+a+" "+b),6>a||Float.isNaN(b)?this.iHaveUnitCell=this.checkUnitCell(6):12==++this.nMatrixElements&&(this.iHaveUnitCell=this.checkUnitCell(22))},"~N,~N");c(c$,"setUnitCell",function(a,b,d,f,c,e){this.ignoreFileUnitCell||
(this.clearUnitCell(),this.notionalUnitCell[0]=a,this.notionalUnitCell[1]=b,this.notionalUnitCell[2]=d,0!=f&&(this.notionalUnitCell[3]=f),0!=c&&(this.notionalUnitCell[4]=c),0!=e&&(this.notionalUnitCell[5]=e),this.iHaveUnitCell=this.checkUnitCell(6))},"~N,~N,~N,~N,~N,~N");c(c$,"addPrimitiveLatticeVector",function(a,b,d){if(!this.ignoreFileUnitCell){if(0==a)for(var f=0;6>f;f++)this.notionalUnitCell[f]=0;a=6+3*a;this.notionalUnitCell[a++]=b[d++];this.notionalUnitCell[a++]=b[d++];this.notionalUnitCell[a]=
b[d];if(Float.isNaN(this.notionalUnitCell[0]))for(a=0;6>a;a++)this.notionalUnitCell[a]=-1;this.iHaveUnitCell=this.checkUnitCell(15)}},"~N,~A,~N");c(c$,"checkUnitCell",function(a){for(var b=0;b<a;b++)if(Float.isNaN(this.notionalUnitCell[b]))return!1;if(22==a&&1==this.notionalUnitCell[0]&&1==this.notionalUnitCell[1]&&1==this.notionalUnitCell[2]&&1==this.notionalUnitCell[6]&&1==this.notionalUnitCell[11]&&1==this.notionalUnitCell[16])return!1;this.doApplySymmetry&&(this.getSymmetry(),this.doConvertToFractional=
!this.fileCoordinatesAreFractional);return!0},"~N");c(c$,"getSymmetry",function(){if(!this.iHaveUnitCell)return null;null==this.symmetry&&(this.getNewSymmetry().setUnitCell(this.notionalUnitCell,!1),this.checkUnitCellOffset());return this.symmetry});c(c$,"checkUnitCellOffset",function(){null==this.fileOffsetFractional||null==this.symmetry||(this.fileOffset.setT(this.fileOffsetFractional),this.unitCellOffsetFractional!=this.fileCoordinatesAreFractional&&(this.unitCellOffsetFractional?this.symmetry.toCartesian(this.fileOffset,
!1):this.symmetry.toFractional(this.fileOffset,!1)))});c(c$,"getNewSymmetry",function(){return this.symmetry=this.getInterface("JS.Symmetry")});c(c$,"setFractionalCoordinates",function(a){this.iHaveFractionalCoordinates=this.fileCoordinatesAreFractional=a;this.checkUnitCellOffset()},"~B");c(c$,"setFilterAtomTypeStr",function(a){this.filterAtomTypeStr=a;this.filterAtomNameTerminator="\x00"},"~S");c(c$,"setFilter",function(a){null==a?a=this.htParams.get("filter"):this.bsFilter=null;null!=a&&(a=a.toUpperCase());
this.filter=a;this.doSetOrientation=!this.checkFilterKey("NOORIENT");this.doCentralize=!this.checkFilterKey("NOCENTER")&&this.checkFilterKey("CENTER");this.addVibrations=!this.checkFilterKey("NOVIB");this.doReadMolecularOrbitals=!this.checkFilterKey("NOMO");this.useAltNames=this.checkFilterKey("ALTNAME");this.reverseModels=this.checkFilterKey("REVERSEMODELS");if(null!=this.filter&&(this.checkFilterKey("HETATM")&&(this.filterHetero=!0,this.filter=JU.PT.rep(this.filter,"HETATM","HETATM-Y")),this.checkFilterKey("ATOM")&&
(this.filterHetero=!0,this.filter=JU.PT.rep(this.filter,"ATOM","HETATM-N")),this.checkFilterKey("CELL=")&&(this.strSupercell=this.filter.substring(this.filter.indexOf("CELL=")+5).toLowerCase()),this.nameRequired=JU.PT.getQuotedAttribute(this.filter,"NAME"),null!=this.nameRequired&&(this.nameRequired.startsWith("'")?this.nameRequired=JU.PT.split(this.nameRequired,"'")[1]:this.nameRequired.startsWith('"')&&(this.nameRequired=JU.PT.split(this.nameRequired,'"')[1]),this.filter=JU.PT.rep(this.filter,this.nameRequired,
""),this.filter=JU.PT.rep(this.filter,"NAME=","")),this.filterAtomName=this.checkFilterKey("*.")||this.checkFilterKey("!."),this.filterElement=this.checkFilterKey("_"),this.filterGroup3=this.checkFilterKey("["),this.filterChain=this.checkFilterKey(":"),this.filterAltLoc=this.checkFilterKey("%"),(this.filterEveryNth=this.checkFilterKey("/="))?this.filterN=this.parseIntAt(this.filter,this.filter.indexOf("/=")+2):this.filterAtomType=this.checkFilterKey("="),-2147483648==this.filterN&&(this.filterEveryNth=
!1),this.haveAtomFilter=this.filterAtomName||this.filterAtomType||this.filterElement||this.filterGroup3||this.filterChain||this.filterAltLoc||this.filterHetero||this.filterEveryNth||this.checkFilterKey("/="),null==this.bsFilter&&(this.bsFilter=new JU.BS,this.htParams.put("bsFilter",this.bsFilter),this.filter=(";"+this.filter+";").$replace(",",";"),a=this.getFilter("SYMOP="),null!=a&&(this.filterSymop=" "+a+" "),JU.Logger.info("filtering with "+this.filter),this.haveAtomFilter&&(this.filter1=this.filter,
0<=(a=this.filter.indexOf("|"))))))this.filter1=this.filter.substring(0,a).trim()+";",this.filter2=";"+this.filter.substring(a).trim()},"~S");c(c$,"getFilter",function(a){var b=null==this.filter?-1:this.filter.indexOf(a);return 0>b?null:this.filter.substring(b+a.length,this.filter.indexOf(";",b))},"~S");c(c$,"checkFilterKey",function(a){return null!=this.filter&&0<=this.filter.indexOf(a)},"~S");c(c$,"filterAtom",function(a,b){if(!this.haveAtomFilter)return!0;var d=this.checkFilter(a,this.filter1);
null!=this.filter2&&(d=(new Boolean(d|this.checkFilter(a,this.filter2))).valueOf());d&&this.filterEveryNth&&(d=0==this.nFiltered++%this.filterN);this.bsFilter.setBitTo(0<=b?b:this.asc.ac,d);return d},"J.adapter.smarter.Atom,~N");c(c$,"checkFilter",function(a,b){return(!this.filterGroup3||null==a.group3||!this.filterReject(b,"[",a.group3.toUpperCase()+"]"))&&(!this.filterAtomName||this.allowAtomName(a.atomName,b))&&(null==this.filterAtomTypeStr||null==a.atomName||0<=a.atomName.toUpperCase().indexOf("\x00"+
this.filterAtomTypeStr))&&(!this.filterElement||null==a.elementSymbol||!this.filterReject(b,"_",a.elementSymbol.toUpperCase()+";"))&&(!this.filterChain||0==a.chainID||!this.filterReject(b,":",""+this.vwr.getChainIDStr(a.chainID)))&&(!this.filterAltLoc||"\x00"==a.altLoc||!this.filterReject(b,"%",""+a.altLoc))&&(!this.filterHetero||!this.allowPDBFilter||!this.filterReject(b,"HETATM",a.isHetero?"-Y":"-N"))},"J.adapter.smarter.Atom,~S");c(c$,"rejectAtomName",function(a){return this.filterAtomName&&!this.allowAtomName(a,
this.filter)},"~S");c(c$,"allowAtomName",function(a,b){return null==a||!this.filterReject(b,".",a.toUpperCase()+this.filterAtomNameTerminator)},"~S,~S");c(c$,"filterReject",function(a,b,d){return 0<=a.indexOf(b)&&0<=a.indexOf("!"+b)==0<=a.indexOf(b+d)},"~S,~S,~S");c(c$,"set2D",function(){this.asc.setInfo("is2D",Boolean.TRUE);this.checkFilterKey("NOMIN")||this.asc.setInfo("doMinimize",Boolean.TRUE)});c(c$,"doGetVibration",function(a){return this.addVibrations&&(0>=this.desiredVibrationNumber||a==this.desiredVibrationNumber)},
"~N");c(c$,"setTransform",function(a,b,d,f,c,e,h,l,k){null==this.matRot&&this.doSetOrientation&&(this.matRot=new JU.M3,a=JU.V3.new3(a,b,d),a.normalize(),this.matRot.setColumnV(0,a),a.set(f,c,e),a.normalize(),this.matRot.setColumnV(1,a),a.set(h,l,k),a.normalize(),this.matRot.setColumnV(2,a),this.asc.setInfo("defaultOrientationMatrix",JU.M3.newM3(this.matRot)),f=JU.Quat.newM(this.matRot),this.asc.setInfo("defaultOrientationQuaternion",f),JU.Logger.info("defaultOrientationMatrix = "+this.matRot))},"~N,~N,~N,~N,~N,~N,~N,~N,~N");
c(c$,"setAtomCoordXYZ",function(a,b,d,f){a.set(b,d,f);this.setAtomCoord(a)},"J.adapter.smarter.Atom,~N,~N,~N");c(c$,"setAtomCoordScaled",function(a,b,d,f){null==a&&(a=this.asc.addNewAtom());this.setAtomCoordXYZ(a,this.parseFloatStr(b[d])*f,this.parseFloatStr(b[d+1])*f,this.parseFloatStr(b[d+2])*f);return a},"J.adapter.smarter.Atom,~A,~N,~N");c(c$,"setAtomCoordTokens",function(a,b,d){this.setAtomCoordXYZ(a,this.parseFloatStr(b[d]),this.parseFloatStr(b[d+1]),this.parseFloatStr(b[d+2]))},"J.adapter.smarter.Atom,~A,~N");
c(c$,"addAtomXYZSymName",function(a,b,d,f){var c=this.asc.addNewAtom();null!=d&&(c.elementSymbol=d);null!=f&&(c.atomName=f);this.setAtomCoordTokens(c,a,b);return c},"~A,~N,~S,~S");c(c$,"setAtomCoord",function(a){null!=this.fileScaling&&(a.x=a.x*this.fileScaling.x+this.fileOffset.x,a.y=a.y*this.fileScaling.y+this.fileOffset.y,a.z=a.z*this.fileScaling.z+this.fileOffset.z);this.doConvertToFractional&&(!this.fileCoordinatesAreFractional&&null!=this.getSymmetry())&&(this.symmetry.haveUnitCell()||this.symmetry.setUnitCell(this.notionalUnitCell,
!1),this.symmetry.toFractional(a,!1),this.iHaveFractionalCoordinates=!0);this.fixJavaFloat&&this.fileCoordinatesAreFractional&&JU.PT.fixPtFloats(a,1E5);this.doCheckUnitCell=!0},"J.adapter.smarter.Atom");c(c$,"addSites",function(a){this.asc.setCurrentModelInfo("pdbSites",a);var b="",d;for(a=a.entrySet().iterator();a.hasNext()&&((d=a.next())||1);){for(var f=d.getKey(),c=d.getValue(),e,h=f.length;0<=--h;)if(!JU.PT.isLetterOrDigit(e=f.charAt(h))&&"'"!=e)f=f.substring(0,h)+"_"+f.substring(h+1);c=c.get("groups");
0!=c.length&&(this.addSiteScript("@site_"+f+" "+c),this.addSiteScript("site_"+f+' = ["'+JU.PT.rep(c,",",'","')+'"]'),b+=',"site_'+f+'"')}0<b.length&&this.addSiteScript("site_list = ["+b.substring(1)+"]")},"java.util.Map");c(c$,"applySymmetryAndSetTrajectory",function(){this.applySymTrajASCR()});c(c$,"applySymTrajASCR",function(){this.forcePacked&&this.initializeSymmetryOptions();var a=this.iHaveUnitCell&&this.doCheckUnitCell?this.asc.getXSymmetry().applySymmetryFromReader(this.getSymmetry()):null;
null==a&&this.asc.setTensors();this.isTrajectory&&this.asc.setTrajectory();null!=this.moreUnitCellInfo&&(this.asc.setCurrentModelInfo("moreUnitCellInfo",this.moreUnitCellInfo),this.moreUnitCellInfo=null);this.finalizeSubclassSymmetry(null!=a);null!=a&&null!=this.ptSupercell&&this.asc.getXSymmetry().finalizeUnitCell(this.ptSupercell);this.initializeSymmetry();return a});c(c$,"finalizeSubclassSymmetry",function(){},"~B");c(c$,"doPreSymmetry",function(){});c(c$,"finalizeMOData",function(a){this.asc.setCurrentModelInfo("moData",
a);null!=a&&(a=a.get("mos"),null!=a&&JU.Logger.info(a.size()+" molecular orbitals read in model "+this.asc.atomSetCount))},"java.util.Map");c$.getElementSymbol=c(c$,"getElementSymbol",function(a){return J.api.JmolAdapter.getElementSymbol(a)},"~N");c(c$,"fillDataBlockFixed",function(a,b,d,f){if(0==d)this.fillDataBlock(a,f);else{f=a.length;for(var c=0;c<f;c++){this.discardLinesUntilNonBlank();var e=x((this.line.length-b+1)/d);a[c]=Array(e);for(var h=0,l=b;h<e;h++,l+=d)a[c][h]=this.line.substring(l,
Math.min(this.line.length,l+d))}}},"~A,~N,~N,~N");c(c$,"fillDataBlock",function(a,b){for(var d=a.length,f=0;f<d;f++)a[f]=JU.PT.getTokens(this.discardLinesUntilNonBlank()),a[f].length<b&&--f},"~A,~N");c(c$,"fillFloatArray",function(a,b,d){for(var f=[],c=0,e=0;e<d.length;e++){for(;null!=f&&c>=f.length;){null==a&&(a=this.rd());if(0==b)f=JU.PT.getTokens(a);else{f=Array(x(a.length/b));for(c=0;c<f.length;c++)f[c]=a.substring(c*b,(c+1)*b)}a=null;c=0}if(null==f)break;d[e]=this.parseFloatStr(f[c++])}return d},
"~S,~N,~A");c(c$,"fillFrequencyData",function(a,b,d,f,c,e,h,l,k){var j=d!=b;null!=l&&(b=l.length);b=c?b:3*b;var m=f.length,r=Array(b);this.fillDataBlockFixed(r,e,h,k);for(h=e=0;e<b;e++,h++){k=r[e];for(var y=c?null:r[++e],w=c?null:r[++e],F=k.length-(c?3*m:m)-1,G=0,q=0;q<m;q++){++F;var p=k[F];")"==p.charAt(0)&&(p=p.substring(1));var p=this.parseFloatStr(p),t=this.parseFloatStr(c?k[++F]:y[F]),s=this.parseFloatStr(c?k[++F]:w[F]);if(!f[q]){var u=null==l?h:l[h];0>u||(JU.Logger.debugging&&JU.Logger.debug("atom "+
u+" vib"+G+": "+p+" "+t+" "+s),this.asc.addVibrationVectorWithSymmetry(a+d*G++ +u,p,t,s,j))}}}},"~N,~N,~N,~A,~B,~N,~N,~A,~N");c(c$,"readLines",function(a){for(;0<=--a;)this.rd();return this.line},"~N");c(c$,"discardLinesUntilStartsWith",function(a){for(;null!=this.rd()&&!this.line.startsWith(a););return this.line},"~S");c(c$,"discardLinesUntilContains",function(a){for(;null!=this.rd()&&0>this.line.indexOf(a););return this.line},"~S");c(c$,"discardLinesUntilContains2",function(a,b){for(;null!=this.rd()&&
0>this.line.indexOf(a)&&0>this.line.indexOf(b););return this.line},"~S,~S");c(c$,"discardLinesUntilBlank",function(){for(;null!=this.rd()&&0!=this.line.trim().length;);return this.line});c(c$,"discardLinesUntilNonBlank",function(){for(;null!=this.rd()&&0==this.line.trim().length;);return this.line});c(c$,"checkLineForScript",function(a){this.line=a;this.checkCurrentLineForScript()},"~S");c(c$,"checkCurrentLineForScript",function(){if(0<=this.line.indexOf("Jmol")&&(0<=this.line.indexOf("Jmol PDB-encoded data")&&
(this.asc.setInfo("jmolData",this.line),this.line.endsWith("#noautobond")||(this.line+="#noautobond")),0<=this.line.indexOf("Jmol data min"))){JU.Logger.info(this.line);var a=M(15,0);JU.Parser.parseStringInfestedFloatArray(this.line.substring(10).$replace("="," ").$replace("{"," ").$replace("}"," "),null,a);var b=JU.P3.new3(a[0],a[1],a[2]),d=JU.P3.new3(a[3],a[4],a[5]);this.fileScaling=JU.P3.new3(a[6],a[7],a[8]);this.fileOffset=JU.P3.new3(a[9],a[10],a[11]);a=JU.P3.new3(a[12],a[13],a[14]);0>=a.x&&(a.x=
100);0>=a.y&&(a.y=100);0>=a.z&&(a.z=100);0==this.fileScaling.y&&(this.fileScaling.y=1);0==this.fileScaling.z&&(this.fileScaling.z=1);this.setFractionalCoordinates(!0);this.latticeCells=E(3,0);this.asc.xtalSymmetry=null;this.setUnitCell(2*a.x/(d.x-b.x),2*a.y/(d.y-b.y),2*a.z/(d.z==b.z?1:d.z-b.z),90,90,90);this.unitCellOffset=JU.P3.newP(a);this.unitCellOffset.scale(-1);this.getSymmetry();this.symmetry.toFractional(this.unitCellOffset,!1);this.unitCellOffset.scaleAdd2(-1,b,this.unitCellOffset);this.symmetry.setOffsetPt(this.unitCellOffset);
this.asc.setInfo("jmolDataScaling",[b,d,a]);this.doApplySymmetry=!0}this.line.endsWith("#noautobond")&&(this.line=this.line.substring(0,this.line.lastIndexOf("#")).trim(),this.asc.setNoAutoBond());b=this.line.indexOf("jmolscript:");0<=b&&(d=this.line.substring(b+11,this.line.length),0<=d.indexOf("#")&&(d=d.substring(0,d.indexOf("#"))),this.addJmolScript(d),this.line=this.line.substring(0,b).trim())});c(c$,"addJmolScript",function(a){JU.Logger.info("#jmolScript: "+a);null==this.previousScript?this.previousScript=
"":this.previousScript.endsWith(";")||(this.previousScript+=";");this.previousScript+=a;this.asc.setInfo("jmolscript",this.previousScript)},"~S");c(c$,"addSiteScript",function(a){null==this.siteScript?this.siteScript="":this.siteScript.endsWith(";")||(this.siteScript+=";");this.siteScript+=a;this.asc.setInfo("sitescript",this.siteScript)},"~S");c(c$,"rd",function(){return this.RL()});c(c$,"RL",function(){this.prevline=this.line;this.line=this.reader.readLine();null!=this.out&&null!=this.line&&this.out.append(this.line).append("\n");
this.ptLine++;JU.Logger.debugging&&JU.Logger.debug(this.line);return this.line});c$.getStrings=c(c$,"getStrings",function(a,b,d){for(var f=Array(b),c=0,e=0;c<b;c++,e+=d)f[c]=a.substring(e,e+d);return f},"~S,~N,~N");c(c$,"getTokens",function(){return JU.PT.getTokens(this.line)});c$.getTokensFloat=c(c$,"getTokensFloat",function(a,b,d){null==b&&(b=M(d,0));JU.PT.parseFloatArrayDataN(JU.PT.getTokens(a),b,d);return b},"~S,~A,~N");c(c$,"parseFloat",function(){return JU.PT.parseFloatNext(this.line,this.next)});
c(c$,"parseFloatStr",function(a){this.next[0]=0;return JU.PT.parseFloatNext(a,this.next)},"~S");c(c$,"parseFloatRange",function(a,b,d){this.next[0]=b;return JU.PT.parseFloatRange(a,d,this.next)},"~S,~N,~N");c(c$,"parseInt",function(){return JU.PT.parseIntNext(this.line,this.next)});c(c$,"parseIntStr",function(a){this.next[0]=0;return JU.PT.parseIntNext(a,this.next)},"~S");c(c$,"parseIntAt",function(a,b){this.next[0]=b;return JU.PT.parseIntNext(a,this.next)},"~S,~N");c(c$,"parseIntRange",function(a,
b,d){this.next[0]=b;return JU.PT.parseIntRange(a,d,this.next)},"~S,~N,~N");c(c$,"parseToken",function(){return JU.PT.parseTokenNext(this.line,this.next)});c(c$,"parseTokenStr",function(a){this.next[0]=0;return JU.PT.parseTokenNext(a,this.next)},"~S");c(c$,"parseTokenNext",function(a){return JU.PT.parseTokenNext(a,this.next)},"~S");c(c$,"parseTokenRange",function(a,b,d){this.next[0]=b;return JU.PT.parseTokenRange(a,d,this.next)},"~S,~N,~N");c$.getFortranFormatLengths=c(c$,"getFortranFormatLengths",
function(a){var b=new JU.Lst,d=0,f=0,c=1,e=!1,h=!0;a+=",";for(var l=0;l<a.length;l++){var k=a.charAt(l);switch(k){case ".":e=!1;continue;case ",":for(e=0;e<f;e++)b.addLast(Integer.$valueOf(d*c));e=!1;h=!0;f=0;continue;case "X":d=f;f=1;c=-1;continue}JU.PT.isDigit(k)?e?d=10*d+k.charCodeAt(0)-48:h&&(f=10*f+k.charCodeAt(0)-48):JU.PT.isLetter(k)?(d=0,e=!0,h=!1,c=1):e=!1}return b},"~S");c(c$,"read3Vectors",function(a){for(var b=Array(3),d=M(3,0),f=0;3>f;f++){if(0<f||Float.isNaN(this.parseFloatStr(this.line)))if(this.rd(),
0==f&&null!=this.line){f=-1;continue}this.fillFloatArray(this.line,0,d);b[f]=new JU.V3;b[f].setA(d);a&&b[f].scale(0.5291772)}return b},"~B");c(c$,"setElementAndIsotope",function(a,b){var d=this.parseIntStr(b);-2147483648==d?a.elementSymbol=b:(b=b.substring((""+d).length),a.elementNumber=0==b.length?d:(d<<7)+J.api.JmolAdapter.getElementNumber(b))},"J.adapter.smarter.Atom,~S");c(c$,"finalizeModelSet",function(){});c(c$,"setChainID",function(a,b){a.chainID=this.vwr.getChainID(b,!0)},"J.adapter.smarter.Atom,~S");
j(c$,"readNextLine",function(){null!=this.rd()&&0<=this.line.indexOf("#jmolscript:")&&this.checkCurrentLineForScript();return this.line});c(c$,"processDSSR",function(a,b){var d=this.vwr.getAnnotationParser().processDSSR(this.asc.getAtomSetAuxiliaryInfo(2147483647),a,this.line,b);this.appendLoadNote(d)},"javajs.api.GenericLineReader,java.util.Map");c(c$,"appendUunitCellInfo",function(a){null==this.moreUnitCellInfo&&(this.moreUnitCellInfo=new JU.Lst);this.moreUnitCellInfo.addLast(a);this.appendLoadNote(a)},
"~S");c(c$,"getInterface",function(a){a=J.api.Interface.getInterface(a,this.vwr,"file");if(null==a)throw new NullPointerException("Interface");return a},"~S");c(c$,"forceSymmetry",function(a){a&&(this.doPackUnitCell=a);this.doApplySymmetry||(this.doApplySymmetry=!0,this.latticeCells[0]=1,this.latticeCells[1]=1,this.latticeCells[2]=1)},"~B");C(c$,"ANGSTROMS_PER_BOHR",0.5291772)}),u("J.adapter.smarter"),c$=s(function(){this.atomSetIndex=0;p(this,arguments)},J.adapter.smarter,"AtomSetObject"),u("J.adapter.smarter"),
v(["J.adapter.smarter.AtomSetObject"],"J.adapter.smarter.Bond",null,function(){c$=s(function(){this.order=this.atomIndex2=this.atomIndex1=0;this.uniqueID=this.colix=this.radius=-1;p(this,arguments)},J.adapter.smarter,"Bond",J.adapter.smarter.AtomSetObject);t(c$,function(a,b,d){this.atomIndex1=a;this.atomIndex2=b;this.order=d},"~N,~N,~N")}),u("J.adapter.smarter"),v(["J.api.JmolAdapterBondIterator"],"J.adapter.smarter.BondIterator",null,function(){c$=s(function(){this.bonds=this.bsAtoms=null;this.ibond=
0;this.bond=null;this.bondCount=0;p(this,arguments)},J.adapter.smarter,"BondIterator",J.api.JmolAdapterBondIterator);t(c$,function(a){this.bsAtoms=a.bsAtoms;this.bonds=a.bonds;this.bondCount=a.bondCount;this.ibond=0},"J.adapter.smarter.AtomSetCollection");j(c$,"hasNext",function(){if(this.ibond==this.bondCount)return!1;for(;null==(this.bond=this.bonds[this.ibond++])||null!=this.bsAtoms&&(!this.bsAtoms.get(this.bond.atomIndex1)||!this.bsAtoms.get(this.bond.atomIndex2));)if(this.ibond==this.bondCount)return!1;
return!0});j(c$,"getAtomUniqueID1",function(){return Integer.$valueOf(this.bond.atomIndex1)});j(c$,"getAtomUniqueID2",function(){return Integer.$valueOf(this.bond.atomIndex2)});j(c$,"getEncodedOrder",function(){return this.bond.order});j(c$,"getRadius",function(){return this.bond.radius});j(c$,"getColix",function(){return this.bond.colix})}),u("J.adapter.smarter"),v(null,"J.adapter.smarter.Resolver","java.lang.Float java.util.StringTokenizer javajs.api.GenericBinaryDocument JU.LimitedLineReader $.PT J.adapter.smarter.AtomSetCollectionReader $.SmarterJmolAdapter J.api.Interface JU.Logger JV.JC".split(" "),
function(){c$=A(J.adapter.smarter,"Resolver");c$.getReaderClassBase=c(c$,"getReaderClassBase",function(a){var b=a+"Reader";if(a.startsWith("Xml"))return"J.adapter.readers.xml."+b;a=";"+a+";";for(var d=1;d<J.adapter.smarter.Resolver.readerSets.length;d+=2)if(0<=J.adapter.smarter.Resolver.readerSets[d].indexOf(a))return"J.adapter.readers."+J.adapter.smarter.Resolver.readerSets[d-1]+b;return"J.adapter.readers.???."+b},"~S");c$.getFileType=c(c$,"getFileType",function(a){try{return J.adapter.smarter.Resolver.determineAtomSetCollectionReader(a,
!1)}catch(b){if(B(b,Exception))return null;throw b;}},"java.io.BufferedReader");c$.getAtomCollectionReader=c(c$,"getAtomCollectionReader",function(a,b,d,f,c){var e=null;a=a.$replace("\\","/");var h=null;null!=b?(e=J.adapter.smarter.Resolver.getReaderFromType(b),null==e&&(e=J.adapter.smarter.Resolver.getReaderFromType("Xml"+b)),null==e?h="unrecognized file format type "+b:JU.Logger.info("The Resolver assumes "+e)):(e=J.adapter.smarter.Resolver.determineAtomSetCollectionReader(d,!0),"\n"==e.charAt(0)&&
(b=f.get("defaultType"),null!=b&&(b=J.adapter.smarter.Resolver.getReaderFromType(b),null!=b&&(e=b))),"\n"==e.charAt(0)?h="unrecognized file format for file\n"+a+"\n"+J.adapter.smarter.Resolver.split(e,50):e.equals("spt")?h="NOTE: file recognized as a script file: "+a+"\n":a.equals("ligand")||JU.Logger.info("The Resolver thinks "+e));if(null!=h)return J.adapter.smarter.SmarterJmolAdapter.close(d),h;f.put("ptFile",Integer.$valueOf(c));0>=c&&f.put("readerName",e);0==e.indexOf("Xml")&&(e="Xml");a=a=null;
a=J.adapter.smarter.Resolver.getReaderClassBase(e);return null==(e=J.api.Interface.getInterface(a,f.get("vwr"),"reader"))?(a=JV.JC.READER_NOT_FOUND+a,JU.Logger.error(a),a):e},"~S,~S,~O,java.util.Map,~N");c$.getReaderFromType=c(c$,"getReaderFromType",function(a){a=";"+a.toLowerCase()+";";if(0<=";zmatrix;cfi;c;vfi;v;mnd;jag;adf;gms;g;gau;mp;nw;orc;pqs;qc;".indexOf(a))return"Input";for(var b,d,f=J.adapter.smarter.Resolver.readerSets.length;0<=--f;)if(0<=(d=(b=J.adapter.smarter.Resolver.readerSets[f--]).toLowerCase().indexOf(a)))return b.substring(d+
1,b.indexOf(";",d+2));return null},"~S");c$.split=c(c$,"split",function(a,b){for(var d="",f=a.length,c=0,e=0;c<f;c=e)d+=a.substring(c,e=Math.min(c+b,f))+"\n";return d},"~S,~N");c$.DOMResolve=c(c$,"DOMResolve",function(a,b){var d=null,f,d=J.adapter.smarter.Resolver.getXmlType(b.get("nameSpaceInfo"));JU.Logger.debugging&&JU.Logger.debug("The Resolver thinks "+d);b.put("readerName",d);d="J.adapter.readers.xml.XmlReader";if(null!=(f=J.api.Interface.getInterface(d,b.get("vwr"),"file")))return f;d="File reader was not found:"+
d;JU.Logger.error(d);return d},"~O,java.util.Map");c$.determineAtomSetCollectionReader=c(c$,"determineAtomSetCollectionReader",function(a,b){if(q(a,javajs.api.GenericBinaryDocument))return"PyMOL";var d,f=new JU.LimitedLineReader(a,16384),c=f.getHeader(64).trim();if(1==c.indexOf("PNG")&&0<=c.indexOf("PNGJ"))return"pngj";if(1==c.indexOf("PNG")||1==c.indexOf("JPG")||6==c.indexOf("JFIF"))return"spt";if(null!=(d=J.adapter.smarter.Resolver.checkFileStart(c)))return d;for(var e=Array(16),h=0,l=0;l<e.length;++l)e[l]=
f.readLineWithNewline(),0<e[l].length&&h++;return null!=(d=J.adapter.smarter.Resolver.checkSpecial1(h,e,c))||null!=(d=J.adapter.smarter.Resolver.checkLineStarts(e))||null!=(d=J.adapter.smarter.Resolver.checkHeaderContains(f.getHeader(0)))||null!=(d=J.adapter.smarter.Resolver.checkSpecial2(e))?d:b?"\n"+e[0]+"\n"+e[1]+"\n"+e[2]+"\n":null},"~O,~B");c$.checkFileStart=c(c$,"checkFileStart",function(a){for(var b=0;b<J.adapter.smarter.Resolver.fileStartsWithRecords.length;++b)for(var d=J.adapter.smarter.Resolver.fileStartsWithRecords[b],
f=1;f<d.length;++f)if(a.startsWith(d[f]))return d[0];return null},"~S");c$.checkSpecial1=c(c$,"checkSpecial1",function(a,b,d){if(1==a&&0<b[0].length&&JU.PT.isDigit(b[0].charAt(0)))return"Jme";if(J.adapter.smarter.Resolver.checkMopacGraphf(b))return"MopacGraphf";if(J.adapter.smarter.Resolver.checkOdyssey(b))return"Odyssey";switch(J.adapter.smarter.Resolver.checkMol(b)){case 1:case 3:case 2E3:case 3E3:return"Mol"}switch(J.adapter.smarter.Resolver.checkXyz(b)){case 1:return"Xyz";case 2:return"Bilbao"}return J.adapter.smarter.Resolver.checkAlchemy(b[0])?
"Alchemy":J.adapter.smarter.Resolver.checkFoldingXyz(b)?"FoldingXyz":J.adapter.smarter.Resolver.checkCube(b)?"Cube":J.adapter.smarter.Resolver.checkWien2k(b)?"Wien2k":J.adapter.smarter.Resolver.checkAims(b)?"Aims":J.adapter.smarter.Resolver.checkGenNBO(b,d)?"GenNBO":null},"~N,~A,~S");c$.checkAims=c(c$,"checkAims",function(a){for(var b=0;b<a.length&&!a[b].startsWith("mol 1");b++){var d=JU.PT.getTokens(a[b]);if(0!=d.length&&(d[0].startsWith("atom")&&4<d.length&&Float.isNaN(JU.PT.parseFloat(d[4]))||
d[0].startsWith("multipole")&&6<=d.length||d[0].startsWith("lattice_vector")&&4<=d.length))return!0}return!1},"~A");c$.checkAlchemy=c(c$,"checkAlchemy",function(a){var b;if(0<=(b=a.indexOf("ATOMS"))&&a.indexOf("BONDS")>b)try{return 0<Integer.parseInt(a.substring(0,b).trim())}catch(d){if(!B(d,NumberFormatException))throw d;}return!1},"~S");c$.checkCube=c(c$,"checkCube",function(a){try{for(var b=2;5>=b;b++){var d=new java.util.StringTokenizer(a[b]),f=d.countTokens();if(!(4==f||2==b&&5==f))return!1;
Integer.parseInt(d.nextToken());for(var c=3;0<=--c;)JU.PT.fVal(d.nextToken());5==f&&Integer.parseInt(d.nextToken())}return!0}catch(e){if(!B(e,NumberFormatException))throw e;}return!1},"~A");c$.checkFoldingXyz=c(c$,"checkFoldingXyz",function(a){var b=new java.util.StringTokenizer(a[0].trim()," \t");if(2>b.countTokens())return!1;try{Integer.parseInt(b.nextToken().trim())}catch(d){if(B(d,NumberFormatException))return!1;throw d;}b=a[1].trim();0==b.length&&(b=a[2].trim());b=new java.util.StringTokenizer(b,
" \t");if(0==b.countTokens())return!1;try{Integer.parseInt(b.nextToken().trim())}catch(f){if(B(f,NumberFormatException))return!1;throw f;}return!0},"~A");c$.checkGenNBO=c(c$,"checkGenNBO",function(a,b){return 0<=b.indexOf("$GENNBO")||a[1].startsWith(" Basis set information needed for plotting orbitals")||0<=a[1].indexOf("s in the AO basis:")||0<=a[2].indexOf(" N A T U R A L   A T O M I C   O R B I T A L")},"~A,~S");c$.checkMol=c(c$,"checkMol",function(a){var b=("X"+a[3]).trim().toUpperCase();if(7>
b.length||0<=b.indexOf("."))return 0;if(b.endsWith("V2000"))return 2E3;if(b.endsWith("V3000"))return 3E3;try{var d=Integer.parseInt(a[3].substring(0,3).trim()),f=Integer.parseInt(a[3].substring(3,6).trim());return 0<d&&0<=f&&0!=a[0].indexOf("@<TRIPOS>")&&0!=a[1].indexOf("@<TRIPOS>")&&0!=a[2].indexOf("@<TRIPOS>")?3:0}catch(c){if(!B(c,NumberFormatException))throw c;}return 0},"~A");c$.checkMopacGraphf=c(c$,"checkMopacGraphf",function(a){return 2<a[0].indexOf("MOPAC-Graphical data")},"~A");c$.checkOdyssey=
c(c$,"checkOdyssey",function(a){var b;for(b=0;b<a.length&&(a[b].startsWith("C ")||0==a[b].length);b++);if(b>=a.length||" "!=a[b].charAt(0)||(b+=2)+1>=a.length)return!1;try{var d=Integer.parseInt(a[b].substring(2).trim()),f=Integer.parseInt(a[b].substring(0,2).trim()),c=Integer.parseInt(a[++b].substring(0,2).trim());if(0>d||5<d||0>=c||5<f)return!1;var e=J.adapter.smarter.AtomSetCollectionReader.getTokensFloat(a[b],null,5);return!Float.isNaN(e[1])&&!Float.isNaN(e[2])&&!Float.isNaN(e[3])&&Float.isNaN(e[4])}catch(h){if(!B(h,
Exception))throw h;}return!1},"~A");c$.checkWien2k=c(c$,"checkWien2k",function(a){return a[2].startsWith("MODE OF CALC=")||a[2].startsWith("             RELA")||a[2].startsWith("             NREL")},"~A");c$.checkXyz=c(c$,"checkXyz",function(a){try{Integer.parseInt(a[0].trim());try{Integer.parseInt(a[2].trim())}catch(b){if(B(b,NumberFormatException))return 1;throw b;}return 2}catch(d){if(B(d,NumberFormatException)){if(0<=a[0].indexOf("Bilbao Crys"))return 2}else throw d;}return 0},"~A");c$.checkLineStarts=
c(c$,"checkLineStarts",function(a){for(var b=0;b<J.adapter.smarter.Resolver.lineStartsWithRecords.length;++b)for(var d=J.adapter.smarter.Resolver.lineStartsWithRecords[b],f=1;f<d.length;++f)for(var c=d[f],e=0;e<a.length;e++)if(a[e].startsWith(c))return d[0];return null},"~A");c$.checkHeaderContains=c(c$,"checkHeaderContains",function(a){for(var b=0;b<J.adapter.smarter.Resolver.headerContainsRecords.length;++b)for(var d=J.adapter.smarter.Resolver.headerContainsRecords[b],f=1;f<d.length;++f)if(!(0>
a.indexOf(d[f])))return b=d[0],!b.equals("Xml")?b:0>a.indexOf("<!DOCTYPE HTML PUBLIC")&&0>a.indexOf("XHTML")&&(0>a.indexOf("xhtml")||0<=a.indexOf("<cml"))?J.adapter.smarter.Resolver.getXmlType(a):null;return null},"~S");c$.getXmlType=c(c$,"getXmlType",function(a){return 0<=a.indexOf("http://www.molpro.net/")?"XmlMolpro":0<=a.indexOf("odyssey")?"XmlOdyssey":0<=a.indexOf("C3XML")?"XmlChem3d":0<=a.indexOf("arguslab")?"XmlArgus":0<=a.indexOf("jvxl")||0<=a.indexOf("http://www.xml-cml.org/schema")||0<=
a.indexOf("cml:")?"XmlCml":0<=a.indexOf("XSD")?"XmlXsd":0<=a.indexOf(">vasp")?"XmlVasp":0<=a.indexOf("<GEOMETRY_INFO>")?"XmlQE":"XmlCml(unidentified)"},"~S");c$.checkSpecial2=c(c$,"checkSpecial2",function(a){return J.adapter.smarter.Resolver.checkGromacs(a)?"Gromacs":J.adapter.smarter.Resolver.checkCrystal(a)?"Crystal":J.adapter.smarter.Resolver.checkCastep(a)?"Castep":J.adapter.smarter.Resolver.checkVasp(a,!0)?"VaspPoscar":J.adapter.smarter.Resolver.checkVasp(a,!1)?"VaspChgcar":null},"~A");c$.checkCrystal=
c(c$,"checkCrystal",function(a){var b=a[1].trim();if(b.equals("SLAB")||b.equals("MOLECULE")||b.equals("CRYSTAL")||b.equals("POLYMER")||(b=a[3]).equals("SLAB")||b.equals("MOLECULE")||b.equals("POLYMER"))return!0;for(b=0;b<a.length;b++)if(a[b].trim().equals("OPTGEOM")||a[b].trim().equals("FREQCALC")||a[b].contains("DOVESI")||a[b].contains("TORINO")||a[b].contains("http://www.crystal.unito.it")||a[b].contains("Pcrystal")||a[b].contains("MPPcrystal")||a[b].contains("crystal executable"))return!0;return!1},
"~A");c$.checkGromacs=c(c$,"checkGromacs",function(a){if(-2147483648==JU.PT.parseInt(a[1]))return!1;for(var b=-1,d=2;16>d&&0!=b;d++)if(69!=(b=a[d].length)&&45!=b&&0!=b)return!1;return!0},"~A");c$.checkCastep=c(c$,"checkCastep",function(a){for(var b=0;b<a.length;b++)if(1==a[b].indexOf("Frequencies in         cm-1")||a[b].contains("CASTEP")||a[b].toUpperCase().startsWith("%BLOCK LATTICE_ABC")||a[b].toUpperCase().startsWith("%BLOCK LATTICE_CART")||a[b].toUpperCase().startsWith("%BLOCK POSITIONS_FRAC")||
a[b].toUpperCase().startsWith("%BLOCK POSITIONS_ABS")||a[b].contains("<-- E"))return!0;return!1},"~A");c$.checkVasp=c(c$,"checkVasp",function(a,b){var d=b?2>a[5].length?8:7:6,f=a[d].toLowerCase();b&&f.contains("selective")&&(f=a[++d].toLowerCase());return f.contains("direct")||f.contains("cartesian")},"~A,~B");C(c$,"classBase","J.adapter.readers.");c$.readerSets=c$.prototype.readerSets="cif. ;Cif;MMCif; molxyz. ;Mol3D;Mol;Xyz; more. ;BinaryDcd;Gromacs;Jcampdx;MdCrd;MdTop;Mol2;TlsDataOnly; quantum. ;Adf;Csf;Dgrid;GamessUK;GamessUS;Gaussian;GaussianFchk;GaussianWfn;Jaguar;Molden;MopacGraphf;GenNBO;NWChem;Odyssey;Psi;Qchem;Spartan;SpartanSmol;WebMO; pdb. ;Pdb;Pqr;P2n; pymol. ;PyMOL; simple. ;Alchemy;Ampac;Cube;FoldingXyz;GhemicalMM;HyperChem;Jme;JSON;Mopac;MopacArchive;Tinker;Input; xtal. ;Abinit;Aims;Bilbao;Castep;Cgd;Crystal;Dmol;Espresso;Gulp;Jana;Magres;Shelx;Siesta;VaspOutcar;VaspPoscar;VaspChgcar;Wien2k;Xcrysden; xml. ;XmlArgus;XmlCml;XmlChem3d;XmlMolpro;XmlOdyssey;XmlXsd;XmlVasp;XmlQE;".split(" ");
C(c$,"CML_NAMESPACE_URI","http://www.xml-cml.org/schema","LEADER_CHAR_MAX",64,"sptRecords",["spt","# Jmol state","# Jmol script","JmolManifest"],"m3dStartRecords",["Alchemy","STRUCTURE  1.00     1"],"cubeFileStartRecords",["Cube","JVXL","#JVXL"],"mol2Records",["Mol2","mol2","@<TRIPOS>"],"webmoFileStartRecords",["WebMO","[HEADER]"],"moldenFileStartRecords",["Molden","[Molden"],"dcdFileStartRecords",["BinaryDcd","T\x00\x00\x00CORD","\x00\x00\x00TCORD"],"tlsDataOnlyFileStartRecords",["TlsDataOnly","REFMAC\n\nTL",
"REFMAC\r\n\r\n","REFMAC\r\rTL"],"inputFileStartRecords",["Input","#ZMATRIX","%mem=","AM1"],"magresFileStartRecords",["Magres","#$magres","# magres"],"pymolStartRecords",["PyMOL","}q"],"janaStartRecords",["Jana","Version Jana"],"jsonStartRecords",["JSON",'{"mol":'],"jcampdxStartRecords",["Jcampdx","##TITLE"]);c$.fileStartsWithRecords=c$.prototype.fileStartsWithRecords=[J.adapter.smarter.Resolver.sptRecords,J.adapter.smarter.Resolver.m3dStartRecords,J.adapter.smarter.Resolver.cubeFileStartRecords,
J.adapter.smarter.Resolver.mol2Records,J.adapter.smarter.Resolver.webmoFileStartRecords,J.adapter.smarter.Resolver.moldenFileStartRecords,J.adapter.smarter.Resolver.dcdFileStartRecords,J.adapter.smarter.Resolver.tlsDataOnlyFileStartRecords,J.adapter.smarter.Resolver.inputFileStartRecords,J.adapter.smarter.Resolver.magresFileStartRecords,J.adapter.smarter.Resolver.pymolStartRecords,J.adapter.smarter.Resolver.janaStartRecords,J.adapter.smarter.Resolver.jsonStartRecords,J.adapter.smarter.Resolver.jcampdxStartRecords];
C(c$,"mmcifLineStartRecords","MMCif _entry.id _database_PDB_ _pdbx_ _chem_comp.pdbx_type _audit_author.name".split(" "),"cifLineStartRecords",["Cif","data_","_publ"],"pqrLineStartRecords",["Pqr","REMARK   1 PQR"],"p2nLineStartRecords",["P2n","REMARK   1 P2N"],"pdbLineStartRecords","Pdb;HEADER;OBSLTE;TITLE ;CAVEAT;COMPND;SOURCE;KEYWDS;EXPDTA;AUTHOR;REVDAT;SPRSDE;JRNL  ;REMARK ;DBREF ;SEQADV;SEQRES;MODRES;HELIX ;SHEET ;TURN  ;CRYST1;ORIGX1;ORIGX2;ORIGX3;SCALE1;SCALE2;SCALE3;ATOM  ;HETATM;MODEL ;LINK  ".split(";"),
"cgdLineStartRecords",["Cgd","EDGE ","edge "],"shelxLineStartRecords","Shelx;TITL ;ZERR ;LATT ;SYMM ;CELL ".split(";"),"ghemicalMMLineStartRecords",["GhemicalMM","!Header mm1gp","!Header gpr"],"jaguarLineStartRecords",["Jaguar","  |  Jaguar version"],"mdlLineStartRecords",["Mol","$MDL "],"spartanSmolLineStartRecords",["SpartanSmol","INPUT="],"csfLineStartRecords",["Csf","local_transform"],"mdTopLineStartRecords",["MdTop","%FLAG TITLE"],"hyperChemLineStartRecords",["HyperChem","mol 1"],"vaspOutcarLineStartRecords",
["VaspOutcar"," vasp."," INCAR:"]);c$.lineStartsWithRecords=c$.prototype.lineStartsWithRecords=[J.adapter.smarter.Resolver.mmcifLineStartRecords,J.adapter.smarter.Resolver.cifLineStartRecords,J.adapter.smarter.Resolver.pqrLineStartRecords,J.adapter.smarter.Resolver.p2nLineStartRecords,J.adapter.smarter.Resolver.pdbLineStartRecords,J.adapter.smarter.Resolver.cgdLineStartRecords,J.adapter.smarter.Resolver.shelxLineStartRecords,J.adapter.smarter.Resolver.ghemicalMMLineStartRecords,J.adapter.smarter.Resolver.jaguarLineStartRecords,
J.adapter.smarter.Resolver.mdlLineStartRecords,J.adapter.smarter.Resolver.spartanSmolLineStartRecords,J.adapter.smarter.Resolver.csfLineStartRecords,J.adapter.smarter.Resolver.mol2Records,J.adapter.smarter.Resolver.mdTopLineStartRecords,J.adapter.smarter.Resolver.hyperChemLineStartRecords,J.adapter.smarter.Resolver.vaspOutcarLineStartRecords];C(c$,"bilbaoContainsRecords",["Bilbao",">Bilbao Crystallographic Server<"],"xmlContainsRecords",'Xml <?xml <atom <molecule <reaction <cml <bond .dtd" <list> <entry <identifier http://www.xml-cml.org/schema/cml2/core'.split(" "),
"gaussianContainsRecords",["Gaussian","Entering Gaussian System","Entering Link 1","1998 Gaussian, Inc."],"ampacContainsRecords",["Ampac","AMPAC Version"],"mopacContainsRecords","Mopac;MOPAC 93 (c) Fujitsu;MOPAC FOR LINUX (PUBLIC DOMAIN VERSION);MOPAC:  VERSION  6;MOPAC   7;MOPAC2;MOPAC (PUBLIC".split(";"),"qchemContainsRecords",["Qchem","Welcome to Q-Chem","A Quantum Leap Into The Future Of Chemistry"],"gamessUKContainsRecords",["GamessUK","GAMESS-UK","G A M E S S - U K"],"gamessUSContainsRecords",
["GamessUS","GAMESS","$CONTRL"],"spartanBinaryContainsRecords",["SpartanSmol","|PropertyArchive","_spartan","spardir","BEGIN Directory Entry Molecule"],"spartanContainsRecords",["Spartan","Spartan"],"adfContainsRecords",["Adf","Amsterdam Density Functional"],"psiContainsRecords",["Psi","    PSI  3","PSI3:"],"nwchemContainsRecords",["NWChem"," argument  1 = "],"uicrcifContainsRecords",["Cif","Crystallographic Information File"],"dgridContainsRecords",["Dgrid","BASISFILE   created by DGrid"],"crystalContainsRecords",
["Crystal","*                                CRYSTAL","TORINO","DOVESI"],"dmolContainsRecords",["Dmol","DMol^3"],"gulpContainsRecords",["Gulp","GENERAL UTILITY LATTICE PROGRAM"],"espressoContainsRecords",["Espresso","Program PWSCF","Program PHONON"],"siestaContainsRecords",["Siesta","MD.TypeOfRun","SolutionMethod","MeshCutoff","WELCOME TO SIESTA"],"xcrysDenContainsRecords",["Xcrysden","PRIMVEC","CONVVEC","PRIMCOORD","ANIMSTEP"],"mopacArchiveContainsRecords",["MopacArchive","SUMMARY OF PM"],"abinitContainsRecords",
["Abinit","http://www.abinit.org","Catholique","Louvain"],"gaussianFchkContainsRecords",["GaussianFchk","Number of point charges in /Mol/"],"inputContainsRecords","Input; ATOMS cartesian;$molecule;&zmat;geometry={;$DATA;%coords;GEOM=PQS;geometry units angstroms".split(";"));c$.headerContainsRecords=c$.prototype.headerContainsRecords=[J.adapter.smarter.Resolver.sptRecords,J.adapter.smarter.Resolver.bilbaoContainsRecords,J.adapter.smarter.Resolver.xmlContainsRecords,J.adapter.smarter.Resolver.gaussianContainsRecords,
J.adapter.smarter.Resolver.ampacContainsRecords,J.adapter.smarter.Resolver.mopacContainsRecords,J.adapter.smarter.Resolver.qchemContainsRecords,J.adapter.smarter.Resolver.gamessUKContainsRecords,J.adapter.smarter.Resolver.gamessUSContainsRecords,J.adapter.smarter.Resolver.spartanBinaryContainsRecords,J.adapter.smarter.Resolver.spartanContainsRecords,J.adapter.smarter.Resolver.mol2Records,J.adapter.smarter.Resolver.adfContainsRecords,J.adapter.smarter.Resolver.psiContainsRecords,J.adapter.smarter.Resolver.nwchemContainsRecords,
J.adapter.smarter.Resolver.uicrcifContainsRecords,J.adapter.smarter.Resolver.dgridContainsRecords,J.adapter.smarter.Resolver.crystalContainsRecords,J.adapter.smarter.Resolver.dmolContainsRecords,J.adapter.smarter.Resolver.gulpContainsRecords,J.adapter.smarter.Resolver.espressoContainsRecords,J.adapter.smarter.Resolver.siestaContainsRecords,J.adapter.smarter.Resolver.xcrysDenContainsRecords,J.adapter.smarter.Resolver.mopacArchiveContainsRecords,J.adapter.smarter.Resolver.abinitContainsRecords,J.adapter.smarter.Resolver.gaussianFchkContainsRecords,
J.adapter.smarter.Resolver.inputContainsRecords]}),u("J.adapter.smarter"),v(["J.api.JmolAdapter"],"J.adapter.smarter.SmarterJmolAdapter","java.io.BufferedReader javajs.api.GenericBinaryDocument JU.Rdr J.adapter.smarter.AtomIterator $.AtomSetCollection $.AtomSetCollectionReader $.BondIterator $.Resolver $.StructureIterator JU.Logger".split(" "),function(){c$=A(J.adapter.smarter,"SmarterJmolAdapter",J.api.JmolAdapter);j(c$,"getFileTypeName",function(a){return q(a,J.adapter.smarter.AtomSetCollection)?
a.fileTypeName:q(a,java.io.BufferedReader)?J.adapter.smarter.Resolver.getFileType(a):null},"~O");j(c$,"getAtomSetCollectionReader",function(a,b,d,f){return J.adapter.smarter.SmarterJmolAdapter.staticGetAtomSetCollectionReader(a,b,d,f)},"~S,~S,~O,java.util.Map");c$.staticGetAtomSetCollectionReader=c(c$,"staticGetAtomSetCollectionReader",function(a,b,d,f){try{var c=J.adapter.smarter.Resolver.getAtomCollectionReader(a,b,d,f,-1);if(q(c,String))try{J.adapter.smarter.SmarterJmolAdapter.close(d)}catch(e){if(!B(e,
Exception))throw e;}else c.setup(a,f,d);return c}catch(h){try{J.adapter.smarter.SmarterJmolAdapter.close(d)}catch(l){if(!B(l,Exception))throw l;}JU.Logger.error(""+h);return""+h}},"~S,~S,~O,java.util.Map");c(c$,"getAtomSetCollectionFromReader",function(a,b,d){var f=J.adapter.smarter.Resolver.getAtomCollectionReader(a,null,b,d,-1);return q(f,J.adapter.smarter.AtomSetCollectionReader)?(f.setup(a,d,b),f.readData()):""+f},"~S,~O,java.util.Map");j(c$,"getAtomSetCollection",function(a){return J.adapter.smarter.SmarterJmolAdapter.staticGetAtomSetCollection(a)},
"~O");c$.staticGetAtomSetCollection=c(c$,"staticGetAtomSetCollection",function(a){var b=null;try{var b=a.reader,d=a.readData();return!q(d,J.adapter.smarter.AtomSetCollection)?d:null!=d.errorMessage?d.errorMessage:d}catch(f){try{JU.Logger.info(f.toString())}catch(c){if(B(c,Exception))JU.Logger.error(f.toString());else throw c;}try{b.close()}catch(e){if(!B(e,Exception))throw e;}JU.Logger.error(""+f);return""+f}},"J.adapter.smarter.AtomSetCollectionReader");j(c$,"getAtomSetCollectionReaders",function(a,
b,d,f,c){var e=f.get("vwr"),h=b.length,l=c?Array(h):null,k=null;if(f.containsKey("concatenate")){for(var k="",j=0;j<h;j++){var m=e.getFileAsString3(b[j],!1,null);if(0<j&&3>=h&&m.startsWith("{")){var r=m.contains("/outliers/")?"validation":"domains",m=e.evaluateExpressionAsVariable(m);null!=m&&null!=m.getMap()&&f.put(r,m)}else 0<=b[j].indexOf("/rna3dhub/")?k+="\n_rna3d \n;"+m+"\n;\n":0<=b[j].indexOf("/dssr/")?k+="\n_dssr \n;"+m+"\n;\n":(k+=m,k.endsWith("\n")||(k+="\n"))}h=1;k=JU.Rdr.getBR(k)}r=c?null:
Array(h);m=null;for(j=0;j<h;j++)try{null!=m&&f.put("vwr",e);null==k&&(k=a.getBufferedReaderOrBinaryDocument(j,!1));if(!q(k,java.io.BufferedReader)&&!q(k,javajs.api.GenericBinaryDocument))return k;var y=J.adapter.smarter.Resolver.getAtomCollectionReader(b[j],null==d?null:d[j],k,f,j);if(!q(y,J.adapter.smarter.AtomSetCollectionReader))return y;m=y;m.setup(null,null,null);m.isBinary?m.setup(b[j],f,a.getBufferedReaderOrBinaryDocument(j,!0)):m.setup(b[j],f,k);k=null;if(c)l[j]=m;else{y=m.readData();if(!q(y,
J.adapter.smarter.AtomSetCollection))return y;r[j]=y;if(null!=r[j].errorMessage)return r[j].errorMessage}}catch(w){return JU.Logger.error(""+w),e.isJS||w.printStackTrace(),""+w}return c?l:this.getAtomSetCollectionFromSet(l,r,f)},"J.api.JmolFilesReaderInterface,~A,~A,java.util.Map,~B");j(c$,"getAtomSetCollectionFromSet",function(a,b,d){var f=null==b?Array(a.length):b;if(null==b)for(b=0;b<a.length;b++)try{var c=a[b].readData();if(!q(c,J.adapter.smarter.AtomSetCollection))return c;f[b]=c;if(null!=f[b].errorMessage)return f[b].errorMessage}catch(e){return JU.Logger.error(""+
e),""+e}if(d.containsKey("trajectorySteps")){a=f[0];try{a.finalizeTrajectoryAs(d.get("trajectorySteps"),d.get("vibrationSteps"))}catch(h){if(B(h,Exception))null==a.errorMessage&&(a.errorMessage=""+h);else throw h;}}else if(f[0].isTrajectory){a=f[0];for(b=1;b<f.length;b++)f[0].mergeTrajectories(f[b])}else a=1==f.length?f[0]:new J.adapter.smarter.AtomSetCollection("Array",null,f,null);return null==a.errorMessage?a:a.errorMessage},"~O,~O,java.util.Map");j(c$,"getAtomSetCollectionFromDOM",function(a,
b){try{var d=J.adapter.smarter.Resolver.DOMResolve(a,b);if(!q(d,J.adapter.smarter.AtomSetCollectionReader))return d;var f=d;f.setup("DOM node",b,null);d=f.readDataObject(a);return!q(d,J.adapter.smarter.AtomSetCollection)?d:null!=d.errorMessage?d.errorMessage:d}catch(c){return JU.Logger.error(""+c),""+c}},"~O,java.util.Map");j(c$,"finish",function(a){a.finish()},"~O");j(c$,"getAtomSetCollectionName",function(a){return a.collectionName},"~O");j(c$,"getAtomSetCollectionAuxiliaryInfo",function(a){return a.atomSetInfo},
"~O");j(c$,"getAtomSetCount",function(a){return a.atomSetCount},"~O");j(c$,"getAtomSetNumber",function(a,b){return a.getAtomSetNumber(b)},"~O,~N");j(c$,"getAtomSetName",function(a,b){return a.getAtomSetName(b)},"~O,~N");j(c$,"getAtomSetAuxiliaryInfo",function(a,b){return a.getAtomSetAuxiliaryInfo(b)},"~O,~N");j(c$,"getHydrogenAtomCount",function(a){return a.getHydrogenAtomCount()},"~O");j(c$,"getBondList",function(a){return a.getBondList()},"~O");j(c$,"getAtomCount",function(a){return null==a.bsAtoms?
a.ac:a.bsAtoms.cardinality()},"~O");j(c$,"coordinatesAreFractional",function(a){return a.coordinatesAreFractional},"~O");j(c$,"getAtomIterator",function(a){return new J.adapter.smarter.AtomIterator(a)},"~O");j(c$,"getBondIterator",function(a){return new J.adapter.smarter.BondIterator(a)},"~O");j(c$,"getStructureIterator",function(a){return 0==a.structureCount?null:new J.adapter.smarter.StructureIterator(a)},"~O");c$.close=c(c$,"close",function(a){q(a,java.io.BufferedReader);a.close()},"~O");C(c$,
"PATH_KEY",".PATH");c$.PATH_SEPARATOR=c$.prototype.PATH_SEPARATOR=System.getProperty("path.separator","/")}),u("J.adapter.smarter"),v(["J.api.JmolAdapterStructureIterator"],"J.adapter.smarter.StructureIterator",["J.api.JmolAdapter"],function(){c$=s(function(){this.structureCount=0;this.structure=this.structures=null;this.istructure=0;this.bsModelsDefined=null;p(this,arguments)},J.adapter.smarter,"StructureIterator",J.api.JmolAdapterStructureIterator);t(c$,function(a){this.structureCount=a.structureCount;
this.structures=a.structures;this.istructure=0;this.bsModelsDefined=a.bsStructuredModels},"J.adapter.smarter.AtomSetCollection");j(c$,"hasNext",function(){if(this.istructure==this.structureCount)return!1;this.structure=this.structures[this.istructure++];return!0});j(c$,"getStructureType",function(){return this.structure.structureType});j(c$,"getSubstructureType",function(){return this.structure.substructureType});j(c$,"getStructureID",function(){return this.structure.structureID});j(c$,"getSerialID",
function(){return this.structure.serialID});j(c$,"getStartChainID",function(){return this.structure.startChainID});j(c$,"getStartSequenceNumber",function(){return this.structure.startSequenceNumber});j(c$,"getStartInsertionCode",function(){return J.api.JmolAdapter.canonizeInsertionCode(this.structure.startInsertionCode)});j(c$,"getEndChainID",function(){return this.structure.endChainID});j(c$,"getEndSequenceNumber",function(){return this.structure.endSequenceNumber});j(c$,"getEndInsertionCode",function(){return this.structure.endInsertionCode});
j(c$,"getStrandCount",function(){return this.structure.strandCount});j(c$,"getStructuredModels",function(){return this.bsModelsDefined});j(c$,"getAtomIndices",function(){return this.structure.atomStartEnd});j(c$,"getModelIndices",function(){return this.structure.modelStartEnd})}),u("J.api"),H(J.api,"AtomIndexIterator"),u("J.api"),v(null,"J.api.Interface",["JU.Logger"],function(){c$=A(J.api,"Interface");c$.getInterface=c(c$,"getInterface",function(a,b,d){try{var f=null,f=ca._4Name(a,b&&b.html5Applet,
d);return null==f?null:f.newInstance()}catch(c){if(B(c,Exception))return JU.Logger.error("Interface.java Error creating instance for "+a+": \n"+c),null;throw c;}},"~S,JV.Viewer,~S");c$.getOption=c(c$,"getOption",function(a,b,d){return J.api.Interface.getInterface("J."+a,b,d)},"~S,JV.Viewer,~S");c$.getUtil=c(c$,"getUtil",function(a,b,d){return J.api.Interface.getInterface("JU."+a,b,d)},"~S,JV.Viewer,~S");c$.getSymmetry=c(c$,"getSymmetry",function(a,b){return J.api.Interface.getInterface("JS.Symmetry",
a,b)},"JV.Viewer,~S")}),u("J.api"),v(null,"J.api.JmolAdapter",["java.util.Hashtable","JU.PT","J.api.JmolViewer","JU.Elements"],function(){c$=A(J.api,"JmolAdapter");c$.getElementSymbol=c(c$,"getElementSymbol",function(a){return JU.Elements.elementSymbolFromNumber(a)},"~N");c$.getElementNumber=c(c$,"getElementNumber",function(a){return JU.Elements.elementNumberFromSymbol(a,!1)},"~S");c$.getNaturalIsotope=c(c$,"getNaturalIsotope",function(a){return JU.Elements.getNaturalIsotope(a)},"~N");c$.getBondingRadius=
c(c$,"getBondingRadius",function(a,b){return JU.Elements.getBondingRadius(a,b)},"~N,~N");c(c$,"getAtomSetCollectionFromReader",function(a,b,d,f){null==f&&(f=new java.util.Hashtable);f.containsKey("vwr")||f.put("vwr",J.api.JmolViewer.allocateViewer(null,this));a=this.getAtomSetCollectionReader(a,b,d,f);return q(a,String)?a:this.getAtomSetCollection(a)},"~S,~S,~O,java.util.Map");c(c$,"openBufferedReader",function(a,b){return this.getAtomSetCollectionFromReader(a,null,b,null)},"~S,java.io.BufferedReader");
c(c$,"openBufferedReader",function(a,b,d){return this.getAtomSetCollectionFromReader(a,null,b,d)},"~S,java.io.BufferedReader,java.util.Map");c(c$,"openBufferedReader",function(a,b,d){return this.getAtomSetCollectionFromReader(a,b,d,null)},"~S,~S,java.io.BufferedReader");c$.canonizeAlphaDigit=c(c$,"canonizeAlphaDigit",function(a){return JU.PT.isLetterOrDigit(a)?a:"\x00"},"~S");c$.canonizeInsertionCode=c(c$,"canonizeInsertionCode",function(a){return J.api.JmolAdapter.canonizeAlphaDigit(a)},"~S");c$.canonizeAlternateLocationID=
c(c$,"canonizeAlternateLocationID",function(a){return J.api.JmolAdapter.canonizeAlphaDigit(a)},"~S");C(c$,"ORDER_COVALENT_SINGLE",1,"ORDER_COVALENT_DOUBLE",2,"ORDER_COVALENT_TRIPLE",3,"ORDER_AROMATIC",515,"ORDER_AROMATIC_SINGLE",513,"ORDER_AROMATIC_DOUBLE",514,"ORDER_HBOND",2048,"ORDER_STEREO_NEAR",1025,"ORDER_STEREO_FAR",1041,"ORDER_PARTIAL01",33,"ORDER_PARTIAL12",66,"ORDER_PARTIAL23",97,"ORDER_PARTIAL32",100,"ORDER_UNSPECIFIED",17,"ORDER_PYMOL_SINGLE",65536,"ORDER_PYMOL_MULT",98304,"cellParamNames",
"_cell_length_a _cell_length_b _cell_length_c _cell_angle_alpha _cell_angle_beta _cell_angle_gamma".split(" "))}),u("J.api"),H(J.api,"JmolAdapterAtomIterator"),u("J.api"),c$=A(J.api,"JmolAdapterBondIterator"),u("J.api"),c$=A(J.api,"JmolAdapterStructureIterator"),u("J.api"),H(J.api,"JmolAppConsoleInterface"),u("J.api"),v(["J.api.JmolSyncInterface"],"J.api.JmolAppletInterface",null,function(){H(J.api,"JmolAppletInterface",J.api.JmolSyncInterface)}),u("J.api"),H(J.api,"JmolCallbackListener"),u("J.api"),
H(J.api,"JmolAnnotationParser"),u("J.api"),H(J.api,"JmolGraphicsInterface"),u("J.api"),H(J.api,"JmolMeasurementClient"),u("J.api"),H(J.api,"JmolModulationSet"),u("J.api"),H(J.api,"JmolNavigatorInterface",Runnable),u("J.api"),v(["J.api.JmolGraphicsInterface"],"J.api.JmolRendererInterface",null,function(){H(J.api,"JmolRendererInterface",J.api.JmolGraphicsInterface)}),u("J.api"),H(J.api,"JmolRepaintManager"),u("J.api"),v(["J.api.JmolCallbackListener"],"J.api.JmolStatusListener",null,function(){H(J.api,
"JmolStatusListener",J.api.JmolCallbackListener)}),u("J.api"),H(J.api,"JmolSyncInterface"),u("J.api"),v(null,"J.api.JmolViewer",["java.util.Hashtable"],function(){c$=s(function(){this.apiPlatform=this.menuStructure=null;p(this,arguments)},J.api,"JmolViewer");c$.allocateViewer=c(c$,"allocateViewer",function(a,b,d,f,c,e,h,l){var k=new java.util.Hashtable;null!=a&&k.put("display",a);null!=b&&k.put("adapter",b);null!=h&&k.put("statuslistener",h);null!=l&&k.put("platform",l);null!=e&&k.put("options",e);
null!=d&&k.put("fullname",d);null!=f&&k.put("documentbase",f);null!=c&&k.put("codebase",c);return new JV.Viewer(k)},"~O,J.api.JmolAdapter,~S,java.net.URL,java.net.URL,~S,J.api.JmolStatusListener,javajs.api.GenericPlatform");c$.allocateViewer=c(c$,"allocateViewer",function(a,b){return J.api.JmolViewer.allocateViewer(a,b,null,null,null,null,null,null)},"~O,J.api.JmolAdapter");c$.allocateViewer=c(c$,"allocateViewer",function(a,b,d,f,c,e,h){return J.api.JmolViewer.allocateViewer(a,b,d,f,c,e,h,null)},
"~O,J.api.JmolAdapter,~S,java.net.URL,java.net.URL,~S,J.api.JmolStatusListener");c(c$,"setConsole",function(a){this.getProperty("DATA_API","getAppConsole",a)},"J.api.JmolAppConsoleInterface");c$.getJmolVersion=c(c$,"getJmolVersion",function(){return JV.Viewer.getJmolVersion()});c(c$,"openFileAsync",function(a){this.openFileAsyncSpecial(a,0)},"~S");c(c$,"renderScreenImage",function(a,b){this.apiPlatform.renderScreenImage(a,b)},"~O,~O,~O");c(c$,"dispose",function(){})}),u("J.api"),H(J.api,"JmolZipUtilities"),
u("J.api"),H(J.api,"Translator"),u("J.appletjs"),v(["javajs.api.JSInterface","JU.GenericApplet"],"J.appletjs.Jmol",["java.util.Hashtable","JU.PT","JU.Logger","$.Parser"],function(){c$=s(function(){this.htParams=null;p(this,arguments)},J.appletjs,"Jmol",JU.GenericApplet,javajs.api.JSInterface);t(c$,function(a){K(this,J.appletjs.Jmol,[]);this.htParams=new java.util.Hashtable;null==a&&(a=new java.util.Hashtable);this.vwrOptions=a;for(var b,d=a.entrySet().iterator();d.hasNext()&&((b=d.next())||1);)this.htParams.put(b.getKey().toLowerCase(),
b.getValue());this.documentBase=""+a.get("documentBase");this.codeBase=""+a.get("codePath");this.isJS=!0;this.init(this)},"java.util.Map");j(c$,"setStereoGraphics",function(a){return a?vwr.apiPlatform.context:null},"~B");j(c$,"initOptions",function(){this.vwrOptions.remove("debug");this.vwrOptions.put("fullName",this.fullName);this.haveDocumentAccess="true".equalsIgnoreCase(""+this.getValue("allowjavascript","true"));this.mayScript=!0});j(c$,"getJmolParameter",function(a){a=this.htParams.get(a.toLowerCase());
return null==a?null:""+a},"~S");j(c$,"doSendJsTextStatus",function(a){System.out.println(a)},"~S");j(c$,"doSendJsTextareaStatus",function(a){System.out.println(a)},"~S");j(c$,"doFunctionXY",function(a,b,d){var f=M(Math.abs(b),Math.abs(d),0);if(!this.mayScript||!this.haveDocumentAccess||0==b||0==d)return f;try{if(0<b&&0<d)for(var c=0;c<b;c++)for(var e=0;e<d;e++)f[c][e]=eval(a)(this.htmlName,c,e);else if(0<d){var h;h=eval(a)(this.htmlName,b,d);b=Math.abs(b);var l=M(b*d,0);JU.Parser.parseStringInfestedFloatArray(h,
null,l);for(a=c=0;c<b;c++)for(e=0;e<d;e++,a++)f[c][e]=l[a]}else eval(a)(this.htmlName,b,d,f)}catch(k){if(B(k,Exception))JU.Logger.error("Exception "+k+" with nX, nY: "+b+" "+d);else throw k;}return f},"~S,~N,~N");j(c$,"doFunctionXYZ",function(a,b,d,f){var c=M(Math.abs(b),Math.abs(d),Math.abs(f),0);if(!this.mayScript||!this.haveDocumentAccess||0==b||0==d||0==f)return c;try{eval(a)(this.htmlName,b,d,f,c)}catch(e){if(B(e,Exception))JU.Logger.error("Exception "+e+" for "+a+" with nX, nY, nZ: "+b+" "+
d+" "+f);else throw e;}return c},"~S,~N,~N,~N");j(c$,"doShowDocument",function(a){window.open(a.toString())},"java.net.URL");j(c$,"doSendCallback",function(a,b,d){if(!(null==a||0==a.length))if(a.equals("alert"))alert(d);else{d=JU.PT.split(a,".");try{for(var f=window[d[0]],c=1;c<d.length;c++)f=f[d[c]];for(c=0;c<b.length;c++)b[c]&&b[c].booleanValue&&(b[c]=b[c].booleanValue());return f(b[0],b[1],b[2],b[3],b[4],b[5],b[6],b[7])}catch(e){System.out.println(a+" failed "+e)}}return""},"~S,~A,~S");j(c$,"doEval",
function(a){try{return""+eval(a)}catch(b){if(B(b,Exception))JU.Logger.error("# error evaluating "+a+":"+b.toString());else throw b;}return""},"~S");j(c$,"doShowStatus",function(a){try{System.out.println(a)}catch(b){if(!B(b,Exception))throw b;}},"~S");j(c$,"cacheFileByName",function(a,b){return this.viewer.cacheFileByName(a,b)},"~S,~B");j(c$,"cachePut",function(a,b){this.viewer.cachePut(a,b)},"~S,~O");j(c$,"getGLmolView",function(){return this.viewer.getGLmolView()});j(c$,"getFullName",function(){return this.fullName});
j(c$,"processMouseEvent",function(a,b,d,f,c){return this.viewer.processMouseEvent(a,b,d,f,c)},"~N,~N,~N,~N,~N");j(c$,"setDisplay",function(a){this.viewer.setDisplay(a)},"~O");j(c$,"setStatusDragDropped",function(a,b,d,f){return this.viewer.setStatusDragDropped(a,b,d,f)},"~N,~N,~N,~S");j(c$,"startHoverWatcher",function(a){this.viewer.startHoverWatcher(a)},"~B");j(c$,"update",function(){this.viewer.updateJS()});j(c$,"openFile",function(a){return this.viewer.openFile(a)},"~S");j(c$,"openFileAsyncSpecial",
function(a,b){this.viewer.openFileAsyncSpecial(a,b)},"~S,~N");j(c$,"processTwoPointGesture",function(a){this.viewer.processTwoPointGesture(a)},"~A");j(c$,"setScreenDimension",function(a,b){this.viewer.setScreenDimension(a,b)},"~N,~N")}),u("J.atomdata"),c$=s(function(){this.modelName=this.fileName=this.programInfo=null;this.modelIndex=0;this.radiusData=this.bsMolecules=this.bsIgnored=this.bsSelected=null;this.hAtomRadius=this.lastModelIndex=this.firstModelIndex=this.firstAtomIndex=0;this.hAtoms=this.atomMolecule=
this.atomicNumber=this.atomRadius=this.atomXyz=this.atomIndex=null;this.adpMode=this.hydrogenAtomCount=this.ac=0;p(this,arguments)},J.atomdata,"AtomData"),t(c$,function(){}),C(c$,"MODE_FILL_MODEL",0,"MODE_FILL_COORDS",1,"MODE_FILL_RADII",2,"MODE_FILL_MOLECULES",4,"MODE_GET_ATTACHED_HYDROGENS",8,"MODE_FILL_MULTIMODEL",16),u("J.atomdata"),H(J.atomdata,"AtomDataServer"),u("J.atomdata"),v(["java.lang.Enum","J.c.VDW"],"J.atomdata.RadiusData",["java.lang.Float","JU.SB"],function(){c$=s(function(){this.vdwType=
this.factorType=this.info=null;this.value=NaN;this.valueExtended=0;this.values=null;p(this,arguments)},J.atomdata,"RadiusData");N(c$,function(){this.factorType=J.atomdata.RadiusData.EnumType.ABSOLUTE;this.vdwType=J.c.VDW.AUTO});t(c$,function(a,b,d,f){null!=a?(this.values=a,this.value=2147483647):null!=d&&(this.factorType=d,this.value=b,null!=f&&(this.vdwType=f))},"~A,~N,J.atomdata.RadiusData.EnumType,J.c.VDW");j(c$,"toString",function(){if(Float.isNaN(this.value))return"";var a=new JU.SB;switch(this.factorType){case J.atomdata.RadiusData.EnumType.ABSOLUTE:a.appendF(this.value);
break;case J.atomdata.RadiusData.EnumType.OFFSET:a.append(0<this.value?"+":"").appendF(this.value);break;case J.atomdata.RadiusData.EnumType.FACTOR:a.appendI(z(100*this.value)).append("%");this.vdwType!==J.c.VDW.AUTO&&a.append(this.vdwType.getVdwLabel());break;case J.atomdata.RadiusData.EnumType.SCREEN:a.appendI(z(this.value))}return a.toString()});I(self.c$);c$=A(J.atomdata.RadiusData,"EnumType",Enum);D(c$,"ABSOLUTE",0,[]);D(c$,"OFFSET",1,[]);D(c$,"FACTOR",2,[]);D(c$,"SCREEN",3,[]);c$=L()}),u("J.awtjs"),
c$=A(J.awtjs,"Image"),c$.grabPixels=c(c$,"grabPixels",function(){return null},"~O,~N,~N"),c$.drawImageToBuffer=c(c$,"drawImageToBuffer",function(){return null},"~O,~O,~O,~N,~N,~N"),c$.getTextPixels=c(c$,"getTextPixels",function(){return null},"~S,javajs.awt.Font,~O,~O,~N,~N,~N"),c$.newBufferedImage=c(c$,"newBufferedImage",function(){return null},"~O,~N,~N"),c$.newBufferedImage=c(c$,"newBufferedImage",function(){return null},"~N,~N"),c$.allocateRgbImage=c(c$,"allocateRgbImage",function(){return null},
"~N,~N,~A,~N,~B"),c$.getStaticGraphics=c(c$,"getStaticGraphics",function(){return null},"~O,~B"),c$.getGraphics=c(c$,"getGraphics",function(){return null},"~O"),c$.flush=c(c$,"flush",function(){},"~O"),c$.disposeGraphics=c(c$,"disposeGraphics",function(){},"~O"),u("J.awtjs"),c$=A(J.awtjs,"JSFont"),c$.newFont=c(c$,"newFont",function(){return null},"~S,~B,~B,~N"),c$.getFontMetrics=c(c$,"getFontMetrics",function(){return null},"~O,~O"),c$.getAscent=c(c$,"getAscent",function(){return 0},"~O"),c$.getDescent=
c(c$,"getDescent",function(){return 0},"~O"),c$.stringWidth=c(c$,"stringWidth",function(){return 0},"javajs.awt.Font,~S"),u("J.awtjs"),v(["J.awtjs2d.Platform"],"J.awtjs.Platform",["J.awtjs.Image","$.JSFont"],function(){c$=A(J.awtjs,"Platform",J.awtjs2d.Platform);j(c$,"allocateRgbImage",function(a,b,d,f,c){return J.awtjs.Image.allocateRgbImage(a,b,d,f,c)},"~N,~N,~A,~N,~B,~B");j(c$,"disposeGraphics",function(a){J.awtjs.Image.disposeGraphics(a)},"~O");j(c$,"drawImage",function(){},"~O,~O,~N,~N,~N,~N");
j(c$,"grabPixels",function(){return null},"~O,~N,~N,~A,~N,~N");j(c$,"drawImageToBuffer",function(a,b,d,f,c,e){return J.awtjs.Image.drawImageToBuffer(a,b,d,f,c,e)},"~O,~O,~O,~N,~N,~N");j(c$,"getTextPixels",function(a,b,d,f,c,e,h){return J.awtjs.Image.getTextPixels(a,b,d,f,c,e,h)},"~S,javajs.awt.Font,~O,~O,~N,~N,~N");j(c$,"flushImage",function(a){J.awtjs.Image.flush(a)},"~O");j(c$,"getGraphics",function(a){return J.awtjs.Image.getGraphics(a)},"~O");j(c$,"getStaticGraphics",function(a,b){return J.awtjs.Image.getStaticGraphics(a,
b)},"~O,~B");j(c$,"newBufferedImage",function(a,b,d){return J.awtjs.Image.newBufferedImage(a,b,d)},"~O,~N,~N");j(c$,"newOffScreenImage",function(a,b){return J.awtjs.Image.newBufferedImage(a,b)},"~N,~N");j(c$,"fontStringWidth",function(a,b){return J.awtjs.JSFont.stringWidth(a,b)},"javajs.awt.Font,~S");j(c$,"getFontAscent",function(a){return J.awtjs.JSFont.getAscent(a)},"~O");j(c$,"getFontDescent",function(a){return J.awtjs.JSFont.getDescent(a)},"~O");j(c$,"getFontMetrics",function(a,b){return J.awtjs.JSFont.getFontMetrics(b,
a)},"javajs.awt.Font,~O");j(c$,"newFont",function(a,b,d,f){return J.awtjs.JSFont.newFont(a,b,d,f)},"~S,~B,~B,~N")}),u("J.awtjs2d"),c$=A(J.awtjs2d,"Display"),c$.getFullScreenDimensions=c(c$,"getFullScreenDimensions",function(a,b){b[0]=a.width;b[1]=a.height},"~O,~A"),c$.hasFocus=c(c$,"hasFocus",function(){return!0},"~O"),c$.requestFocusInWindow=c(c$,"requestFocusInWindow",function(){},"~O"),c$.renderScreenImage=c(c$,"renderScreenImage",function(){},"javajs.api.PlatformViewer,~O,~O"),c$.setTransparentCursor=
c(c$,"setTransparentCursor",function(){},"~O"),c$.setCursor=c(c$,"setCursor",function(){},"~N,~O"),c$.prompt=c(c$,"prompt",function(a,b){var d=prompt(a,b);return null!=d?d:"null"},"~S,~S,~A,~B"),c$.convertPointFromScreen=c(c$,"convertPointFromScreen",function(){},"~O,JU.P3"),c$.drawImage=c(c$,"drawImage",function(a,b,d,f,c,e){var h=b.buf8,l=b.buf32;e*=c;for(var k=4*(b.width-c),j=0,m=4*d;j<e;)h[m++]=l[j]>>16&255,h[m++]=l[j]>>8&255,h[m++]=l[j]&255,h[m++]=255,0==++j%c&&(m+=k);a.putImageData(b.imgdata,
d,f)},"~O,~O,~N,~N,~N,~N"),u("J.awtjs2d"),c$=A(J.awtjs2d,"Image"),c$.getWidth=c(c$,"getWidth",function(a){return a.imageWidth?a.imageWidth:a.width},"~O"),c$.getHeight=c(c$,"getHeight",function(a){return a.imageHeight?a.imageHeight:a.height},"~O"),c$.grabPixels=c(c$,"grabPixels",function(a,b,d){if(a._buf32)return a._buf32;a=a.getImageData(0,0,b,d).data;return this.toIntARGB(a)},"~O,~N,~N"),c$.toIntARGB=c(c$,"toIntARGB",function(a){for(var b=x(a.length/4),d=E(b,0),f=0,c=0;f<b;c++)d[f++]=a[c++]<<16|
a[c++]<<8|a[c++]|4278190080;return d},"~A"),c$.getTextPixels=c(c$,"getTextPixels",function(a,b,d,f,c,e){d.fillStyle="#000000";d.fillRect(0,0,f,c);d.fillStyle="#FFFFFF";d.font=b.font;d.fillText(a,0,e);return this.grabPixels(d,f,c)},"~S,javajs.awt.Font,~O,~N,~N,~N"),c$.allocateRgbImage=c(c$,"allocateRgbImage",function(a,b,d,f,c,e){null==e&&(e={width:a,height:b});e.buf32=d;return e},"~N,~N,~A,~N,~B,~O"),c$.getStaticGraphics=c(c$,"getStaticGraphics",function(a){return this.getGraphics(a)},"~O,~B"),c$.getGraphics=
c(c$,"getGraphics",function(a){return a.getContext("2d")},"~O"),u("J.awtjs2d"),v(["javajs.api.GenericFileInterface"],"J.awtjs2d.JSFile",["JU.OC","$.PT","JV.Viewer"],function(){c$=s(function(){this.fullName=this.name=null;p(this,arguments)},J.awtjs2d,"JSFile",null,javajs.api.GenericFileInterface);c$.newFile=c(c$,"newFile",function(a){return new J.awtjs2d.JSFile(a)},"~S");t(c$,function(a){this.name=a.$replace("\\","/");this.fullName=a;!this.fullName.startsWith("/")&&0>JU.OC.urlTypeIndex(a)&&(this.fullName=
JV.Viewer.jsDocumentBase+"/"+this.fullName);this.fullName=JU.PT.rep(this.fullName,"/./","/");a.substring(a.lastIndexOf("/")+1)},"~S");j(c$,"getParentAsFile",function(){var a=this.fullName.lastIndexOf("/");return 0>a?null:new J.awtjs2d.JSFile(this.fullName.substring(0,a))});j(c$,"getFullPath",function(){return this.fullName});j(c$,"getName",function(){return this.name});j(c$,"isDirectory",function(){return this.fullName.endsWith("/")});j(c$,"length",function(){return 0});c$.getURLContents=c(c$,"getURLContents",
function(a,b,d){try{var f=a.openConnection();null!=b?f.outputBytes(b):null!=d&&f.outputString(d);return f.getContents()}catch(c){if(B(c,Exception))return c.toString();throw c;}},"java.net.URL,~A,~S")}),u("J.awtjs2d"),c$=A(J.awtjs2d,"JSFont"),c$.newFont=c(c$,"newFont",function(a,b,d,f,c){a=a.equals("Monospaced")?"Courier":a.startsWith("Sans")?"Sans-Serif":"Serif";return(b?"bold ":"")+(d?"italic ":"")+f+c+" "+a},"~S,~B,~B,~N,~S"),c$.getFontMetrics=c(c$,"getFontMetrics",function(a,b){b.font!=a.font&&
(b.font=a.font,a.font=b.font,b._fontAscent=Math.ceil(a.fontSize),b._fontDescent=Math.ceil(0.25*a.fontSize));return b},"javajs.awt.Font,~O"),c$.getAscent=c(c$,"getAscent",function(a){return Math.ceil(a._fontAscent)},"~O"),c$.getDescent=c(c$,"getDescent",function(a){return Math.ceil(a._fontDescent)},"~O"),c$.stringWidth=c(c$,"stringWidth",function(a,b,d){b.font=a.font;return Math.ceil(b.measureText(d).width)},"javajs.awt.Font,~O,~S"),u("J.awtjs2d"),v(["javajs.api.GenericMouseInterface","javajs.awt.event.Event"],
"J.awtjs2d.Mouse",["java.lang.Character","JU.PT","$.V3","JU.Logger"],function(){c$=s(function(){this.manager=this.vwr=null;this.keyBuffer="";this.wheeling=this.isMouseDown=!1;this.modifiersWhenPressed10=this.yWhenPressed=this.xWhenPressed=0;p(this,arguments)},J.awtjs2d,"Mouse",null,javajs.api.GenericMouseInterface);t(c$,function(a,b){this.vwr=b;this.manager=this.vwr.acm},"~N,javajs.api.PlatformViewer,~O");j(c$,"clear",function(){});j(c$,"dispose",function(){});j(c$,"processEvent",function(a,b,d,f,
c){-1!=a&&(f=J.awtjs2d.Mouse.applyLeftMouse(f));switch(a){case -1:this.wheeled(c,b,f);break;case 501:this.xWhenPressed=b;this.yWhenPressed=d;this.modifiersWhenPressed10=f;this.pressed(c,b,d,f,!1);break;case 506:this.dragged(c,b,d,f);break;case 504:this.entry(c,b,d,!1);break;case 505:this.entry(c,b,d,!0);break;case 503:this.moved(c,b,d,f);break;case 502:this.released(c,b,d,f);b==this.xWhenPressed&&(d==this.yWhenPressed&&f==this.modifiersWhenPressed10)&&this.clicked(c,b,d,f,1);break;default:return!1}return!0},
"~N,~N,~N,~N,~N");j(c$,"processTwoPointGesture",function(a){if(!(2>a[0].length)){var b=a[0],d=a[1],f=b[0],c=b[d.length-1];a=f[0];var e=c[0],f=f[1],c=c[1],h=JU.V3.new3(e-a,c-f,0),l=h.length(),k=d[0],j=d[d.length-1],d=k[0],m=j[0],k=k[1],j=j[1],r=JU.V3.new3(m-d,j-k,0),y=r.length();1>l||1>y||(h.normalize(),r.normalize(),h=h.dot(r),0.8<h?(a=z(e-b[b.length-2][0]),b=z(c-b[b.length-2][1]),this.vwr.translateXYBy(a,b)):-0.8>h&&(h=JU.V3.new3(d-a,k-f,0),r=JU.V3.new3(m-e,j-c,0),b=r.length()-h.length(),this.wheeled(System.currentTimeMillis(),
0>b?-1:1,32)))}},"~A");c(c$,"mouseClicked",function(a){this.clicked(a.getWhen(),a.getX(),a.getY(),a.getModifiers(),a.getClickCount())},"java.awt.event.MouseEvent");c(c$,"mouseEntered",function(a){this.entry(a.getWhen(),a.getX(),a.getY(),!1)},"java.awt.event.MouseEvent");c(c$,"mouseExited",function(a){this.entry(a.getWhen(),a.getX(),a.getY(),!0)},"java.awt.event.MouseEvent");c(c$,"mousePressed",function(a){this.pressed(a.getWhen(),a.getX(),a.getY(),a.getModifiers(),a.isPopupTrigger())},"java.awt.event.MouseEvent");
c(c$,"mouseReleased",function(a){this.released(a.getWhen(),a.getX(),a.getY(),a.getModifiers())},"java.awt.event.MouseEvent");c(c$,"mouseDragged",function(a){var b=a.getModifiers();0==(b&28)&&(b|=16);this.dragged(a.getWhen(),a.getX(),a.getY(),b)},"java.awt.event.MouseEvent");c(c$,"mouseMoved",function(a){this.moved(a.getWhen(),a.getX(),a.getY(),a.getModifiers())},"java.awt.event.MouseEvent");c(c$,"mouseWheelMoved",function(a){a.consume();this.wheeled(a.getWhen(),a.getWheelRotation(),a.getModifiers())},
"java.awt.event.MouseWheelEvent");c(c$,"keyTyped",function(a){a.consume();if(this.vwr.menuEnabled()){var b=a.getKeyChar(),d=a.getModifiers();JU.Logger.debuggingHigh&&JU.Logger.debug("MouseManager keyTyped: "+b+" "+(0+b.charCodeAt(0))+" "+d);if(0!=d&&1!=d)switch(b){case String.fromCharCode(11):case "k":a=!this.vwr.getBooleanProperty("allowKeyStrokes");switch(d){case 2:this.vwr.setBooleanProperty("allowKeyStrokes",a);this.vwr.setBooleanProperty("showKeyStrokes",!0);break;case 10:case 1:this.vwr.setBooleanProperty("allowKeyStrokes",
a),this.vwr.setBooleanProperty("showKeyStrokes",!1)}this.clearKeyBuffer();this.vwr.refresh(3,"showkey");break;case 26:case "z":switch(d){case 2:this.vwr.undoMoveAction(4165,1);break;case 3:this.vwr.undoMoveAction(4139,1)}break;case 25:case "y":switch(d){case 2:this.vwr.undoMoveAction(4139,1)}}else this.vwr.getBooleanProperty("allowKeyStrokes")&&this.addKeyBuffer(1==a.getModifiers()?Character.toUpperCase(b):b)}},"java.awt.event.KeyEvent");c(c$,"keyPressed",function(a){this.vwr.isApplet&&a.consume();
this.manager.keyPressed(a.getKeyCode(),a.getModifiers())},"java.awt.event.KeyEvent");c(c$,"keyReleased",function(a){a.consume();this.manager.keyReleased(a.getKeyCode())},"java.awt.event.KeyEvent");c(c$,"clearKeyBuffer",function(){0!=this.keyBuffer.length&&(this.keyBuffer="",this.vwr.getBooleanProperty("showKeyStrokes")&&this.vwr.evalStringQuietSync('!set echo _KEYSTROKES; set echo bottom left;echo ""',!0,!0))});c(c$,"addKeyBuffer",function(a){10==a.charCodeAt(0)?this.sendKeyBuffer():(8==a.charCodeAt(0)?
0<this.keyBuffer.length&&(this.keyBuffer=this.keyBuffer.substring(0,this.keyBuffer.length-1)):this.keyBuffer+=a,this.vwr.getBooleanProperty("showKeyStrokes")&&this.vwr.evalStringQuietSync("!set echo _KEYSTROKES; set echo bottom left;echo "+JU.PT.esc("\u0001"+this.keyBuffer),!0,!0))},"~S");c(c$,"sendKeyBuffer",function(){var a=this.keyBuffer;this.vwr.getBooleanProperty("showKeyStrokes")&&this.vwr.evalStringQuietSync("!set echo _KEYSTROKES; set echo bottom left;echo "+JU.PT.esc(this.keyBuffer),!0,!0);
this.clearKeyBuffer();this.vwr.evalStringQuietSync(a,!1,!0)});c(c$,"entry",function(a,b,d,f){this.wheeling=!1;this.manager.mouseEnterExit(a,b,d,f)},"~N,~N,~N,~B");c(c$,"clicked",function(a,b,d,f){this.clearKeyBuffer();this.manager.mouseAction(2,a,b,d,1,f)},"~N,~N,~N,~N,~N");c(c$,"moved",function(a,b,d,f){this.clearKeyBuffer();this.isMouseDown?this.manager.mouseAction(1,a,b,d,0,J.awtjs2d.Mouse.applyLeftMouse(f)):this.manager.mouseAction(0,a,b,d,0,f)},"~N,~N,~N,~N");c(c$,"wheeled",function(a,b,d){this.clearKeyBuffer();
this.wheeling=!0;this.manager.mouseAction(3,a,0,b,0,d&-29|32)},"~N,~N,~N");c(c$,"pressed",function(a,b,d,f){this.clearKeyBuffer();this.isMouseDown=!0;this.wheeling=!1;this.manager.mouseAction(4,a,b,d,0,f)},"~N,~N,~N,~N,~B");c(c$,"released",function(a,b,d,f){this.wheeling=this.isMouseDown=!1;this.manager.mouseAction(5,a,b,d,0,f)},"~N,~N,~N,~N");c(c$,"dragged",function(a,b,d,f){this.wheeling||(20==(f&20)&&(f=f&-5|2),this.manager.mouseAction(1,a,b,d,0,f))},"~N,~N,~N,~N");c$.applyLeftMouse=c(c$,"applyLeftMouse",
function(a){return 0==(a&28)?a|16:a},"~N")}),u("J.awtjs2d"),v(["javajs.api.GenericPlatform"],"J.awtjs2d.Platform","java.net.URL JU.AjaxURLStreamHandlerFactory $.Rdr $.SB J.api.Interface J.awtjs2d.Display $.Image $.JSFile $.JSFont $.Mouse".split(" "),function(){c$=s(function(){this.context=this.vwr=this.canvas=null;p(this,arguments)},J.awtjs2d,"Platform",null,javajs.api.GenericPlatform);j(c$,"setViewer",function(a,b){this.vwr=a;this.canvas=b;null!=b&&(this.context=b.getContext("2d"),b.imgdata=this.context.getImageData(0,
0,b.width,b.height),b.buf8=b.imgdata.data);try{java.net.URL.setURLStreamHandlerFactory(new JU.AjaxURLStreamHandlerFactory)}catch(d){}},"javajs.api.PlatformViewer,~O");j(c$,"isSingleThreaded",function(){return!0});j(c$,"getJsObjectInfo",function(a,b,d){return"localName"==b?a[0].nodeName:null==d?a[0][b]:a[0][b](d[0])},"~A,~S,~A");j(c$,"isHeadless",function(){return!1});j(c$,"getMouseManager",function(a,b){return new J.awtjs2d.Mouse(a,this.vwr,b)},"~N,~O");j(c$,"convertPointFromScreen",function(a,b){J.awtjs2d.Display.convertPointFromScreen(a,
b)},"~O,JU.P3");j(c$,"getFullScreenDimensions",function(a,b){J.awtjs2d.Display.getFullScreenDimensions(a,b)},"~O,~A");j(c$,"getMenuPopup",function(a,b){var d="j"==b?"awtjs2d.JmolJSPopup":"awtjs2d.JSModelKitPopup",f=J.api.Interface.getOption(d,this.vwr,"popup");try{null!=f&&f.jpiInitialize(this.vwr,a)}catch(c){if(B(c,Exception))return System.out.println("Exception creating "+d+":"+c),null;throw c;}return f},"~S,~S");j(c$,"hasFocus",function(a){return J.awtjs2d.Display.hasFocus(a)},"~O");j(c$,"prompt",
function(a,b,d,f){return J.awtjs2d.Display.prompt(a,b,d,f)},"~S,~S,~A,~B");j(c$,"renderScreenImage",function(a,b){J.awtjs2d.Display.renderScreenImage(this.vwr,a,b)},"~O,~O");j(c$,"drawImage",function(a,b,d,f,c,e){J.awtjs2d.Display.drawImage(a,b,d,f,c,e)},"~O,~O,~N,~N,~N,~N");j(c$,"requestFocusInWindow",function(a){J.awtjs2d.Display.requestFocusInWindow(a)},"~O");j(c$,"repaint",function(){"undefined"!=typeof Jmol&&Jmol._repaint&&Jmol._repaint(this.vwr.html5Applet,!0)},"~O");j(c$,"setTransparentCursor",
function(a){J.awtjs2d.Display.setTransparentCursor(a)},"~O");j(c$,"setCursor",function(a,b){J.awtjs2d.Display.setCursor(a,b)},"~N,~O");j(c$,"allocateRgbImage",function(a,b,d,f,c,e){return J.awtjs2d.Image.allocateRgbImage(a,b,d,f,c,e?null:this.canvas)},"~N,~N,~A,~N,~B,~B");j(c$,"notifyEndOfRendering",function(){});j(c$,"createImage",function(){return null},"~O");j(c$,"disposeGraphics",function(){},"~O");j(c$,"grabPixels",function(a,b,d){a.image&&(b!=a.width||d!=a.height)&&Jmol._setCanvasImage(a,b,
d);if(a.buf32)return a.buf32;b=J.awtjs2d.Image.grabPixels(J.awtjs2d.Image.getGraphics(a),b,d);return a.buf32=b},"~O,~N,~N,~A,~N,~N");j(c$,"drawImageToBuffer",function(a,b,d,f,c){return this.grabPixels(d,f,c,null,0,0)},"~O,~O,~O,~N,~N,~N");j(c$,"getTextPixels",function(a,b,d,f,c,e,h){return J.awtjs2d.Image.getTextPixels(a,b,d,c,e,h)},"~S,javajs.awt.Font,~O,~O,~N,~N,~N");j(c$,"flushImage",function(){},"~O");j(c$,"getGraphics",function(a){return null==a?this.context:J.awtjs2d.Image.getGraphics(a)},"~O");
j(c$,"getImageHeight",function(a){return null==a?-1:J.awtjs2d.Image.getHeight(a)},"~O");j(c$,"getImageWidth",function(a){return null==a?-1:J.awtjs2d.Image.getWidth(a)},"~O");j(c$,"getStaticGraphics",function(a,b){return J.awtjs2d.Image.getStaticGraphics(a,b)},"~O,~B");j(c$,"newBufferedImage",function(a,b,d){return"undefined"!=typeof Jmol&&Jmol._getHiddenCanvas?Jmol._getHiddenCanvas(this.vwr.html5Applet,"stereoImage",b,d):null},"~O,~N,~N");j(c$,"newOffScreenImage",function(a,b){return"undefined"!=
typeof Jmol&&Jmol._getHiddenCanvas?Jmol._getHiddenCanvas(this.vwr.html5Applet,"textImage",a,b):null},"~N,~N");j(c$,"waitForDisplay",function(a,b){if("undefined"==typeof Jmol||!Jmol._getHiddenCanvas)return!1;var d=this.vwr,f=d.getEvalContextAndHoldQueue(d.eval),c=a[0];return Jmol._loadImage(this,a,b,function(a,b){d.loadImageData(a,b,c,f)})},"~O,~O");j(c$,"fontStringWidth",function(a,b){return J.awtjs2d.JSFont.stringWidth(a,this.context,b)},"javajs.awt.Font,~S");j(c$,"getFontAscent",function(a){return J.awtjs2d.JSFont.getAscent(a)},
"~O");j(c$,"getFontDescent",function(a){return J.awtjs2d.JSFont.getDescent(a)},"~O");j(c$,"getFontMetrics",function(a,b){return J.awtjs2d.JSFont.getFontMetrics(a,b)},"javajs.awt.Font,~O");j(c$,"newFont",function(a,b,d,f){return J.awtjs2d.JSFont.newFont(a,b,d,f,"px")},"~S,~B,~B,~N");j(c$,"getDateFormat",function(a){if(null!=a){if(0<=a.indexOf("8824")){var b=new Date;a=b.toString().split(" ");var d="0"+b.getMonth(),d=d.substring(d.length-2),b="0"+b.getDate(),b=b.substring(b.length-2);return a[3]+d+
b+a[4].replace(/\:/g,"")+a[5].substring(3,6)+"'"+a[5].substring(6,8)+"'"}if(0<=a.indexOf("8601"))return b=new Date,a=b.toString().split(" "),d="0"+b.getMonth(),d=d.substring(d.length-2),b="0"+b.getDate(),b=b.substring(b.length-2),a[3]+d+b+a[4].replace(/\:/g,"")+a[5].substring(3,6)+"'"+a[5].substring(6,8)+"'"}return(""+new Date).split(" (")[0]},"~S");j(c$,"newFile",function(a){return new J.awtjs2d.JSFile(a)},"~S");j(c$,"getBufferedFileInputStream",function(){return null},"~S");j(c$,"getURLContents",
function(a,b,d,f){return J.awtjs2d.Platform.getURLContentsStatic(a,b,d,f)},"java.net.URL,~A,~S,~B");c$.getURLContentsStatic=c(c$,"getURLContentsStatic",function(a,b,d,f){a=J.awtjs2d.JSFile.getURLContents(a,b,d);try{return!f?a:q(a,String)?a:q(a,JU.SB)?a.toString():q(a,Array)?String.instantialize(a):String.instantialize(JU.Rdr.getStreamAsBytes(a,null))}catch(c){if(B(c,Exception))return""+c;throw c;}},"java.net.URL,~A,~S,~B");j(c$,"getLocalUrl",function(){return null},"~S")}),u("J.bspt"),v(null,"J.bspt.Bspf",
["JU.AU","J.bspt.Bspt","JU.Logger"],function(){c$=s(function(){this.dimMax=0;this.bspts=null;this.isValid=!1;this.cubeIterators=this.bsptsValid=null;p(this,arguments)},J.bspt,"Bspf");c(c$,"validateModel",function(a,b){this.bsptsValid[a]=b},"~N,~B");c(c$,"isInitializedIndex",function(a){return this.bspts.length>a&&null!=this.bspts[a]&&this.bsptsValid[a]},"~N");t(c$,function(a){this.dimMax=a;this.bspts=Array(1);this.bsptsValid=ea(1,!1);this.cubeIterators=[]},"~N");c(c$,"addTuple",function(a,b){a>=this.bspts.length&&
(this.bspts=JU.AU.arrayCopyObject(this.bspts,a+1),this.bsptsValid=JU.AU.arrayCopyBool(this.bsptsValid,a+1));var d=this.bspts[a];null==d&&(d=this.bspts[a]=new J.bspt.Bspt(this.dimMax,a));d.addTuple(b)},"~N,JU.P3");c(c$,"stats",function(){for(var a=0;a<this.bspts.length;++a)null!=this.bspts[a]&&this.bspts[a].stats()});c(c$,"dump",function(){for(var a=0;a<this.bspts.length;++a)JU.Logger.info(">>>>\nDumping bspt #"+a+"\n>>>>"),this.bspts[a].dump();JU.Logger.info("<<<<")});c(c$,"getCubeIterator",function(a){if(0>
a)return this.getNewCubeIterator(-1-a);a>=this.cubeIterators.length&&(this.cubeIterators=JU.AU.arrayCopyObject(this.cubeIterators,a+1));null==this.cubeIterators[a]&&null!=this.bspts[a]&&(this.cubeIterators[a]=this.getNewCubeIterator(a));this.cubeIterators[a].set(this.bspts[a]);return this.cubeIterators[a]},"~N");c(c$,"getNewCubeIterator",function(a){return this.bspts[a].allocateCubeIterator()},"~N");c(c$,"initialize",function(a,b,d){null!=this.bspts[a]&&this.bspts[a].reset();for(var f=d.nextSetBit(0);0<=
f;f=d.nextSetBit(f+1))this.addTuple(a,b[f]);this.bsptsValid[a]=!0},"~N,~A,JU.BS")}),u("J.bspt"),v(null,"J.bspt.Bspt",["JU.SB","J.bspt.CubeIterator","$.Leaf","JU.Logger"],function(){c$=s(function(){this.index=this.dimMax=this.treeDepth=0;this.eleRoot=null;p(this,arguments)},J.bspt,"Bspt");t(c$,function(a,b){this.dimMax=a;this.index=b;this.reset()},"~N,~N");c(c$,"reset",function(){this.eleRoot=new J.bspt.Leaf(this,null,0);this.treeDepth=1});c(c$,"addTuple",function(a){this.eleRoot=this.eleRoot.addTuple(0,
a)},"JU.P3");c(c$,"stats",function(){});c(c$,"dump",function(){var a=new JU.SB;this.eleRoot.dump(0,a);JU.Logger.info(a.toString())});c(c$,"allocateCubeIterator",function(){return new J.bspt.CubeIterator(this)});C(c$,"leafCountMax",2,"MAX_TREE_DEPTH",100)}),u("J.bspt"),v(null,"J.bspt.CubeIterator",["J.bspt.Node"],function(){c$=s(function(){this.stack=this.bspt=null;this.leafIndex=this.sp=0;this.leaf=null;this.dz=this.dy=this.dx=this.cz=this.cy=this.cx=this.radius=0;this.tHemisphere=!1;p(this,arguments)},
J.bspt,"CubeIterator");t(c$,function(a){this.set(a)},"J.bspt.Bspt");c(c$,"set",function(a){this.bspt=a;this.stack=Array(a.treeDepth)},"J.bspt.Bspt");c(c$,"initialize",function(a,b,d){this.radius=b;this.tHemisphere=!1;this.cx=a.x;this.cy=a.y;this.cz=a.z;this.leaf=null;this.stack[0]=this.bspt.eleRoot;this.sp=1;this.findLeftLeaf();this.tHemisphere=d},"JU.T3,~N,~B");c(c$,"release",function(){this.set(this.bspt)});c(c$,"hasMoreElements",function(){for(;null!=this.leaf;){for(;this.leafIndex<this.leaf.count;++this.leafIndex)if(this.isWithinRadius(this.leaf.tuples[this.leafIndex]))return!0;
this.findLeftLeaf()}return!1});c(c$,"nextElement",function(){return this.leaf.tuples[this.leafIndex++]});c(c$,"foundDistance2",function(){return this.dx*this.dx+this.dy*this.dy+this.dz*this.dz});c(c$,"findLeftLeaf",function(){this.leaf=null;if(0!=this.sp){for(var a=this.stack[--this.sp];q(a,J.bspt.Node);){var b;switch(a.dim){case 0:b=this.cx;break;case 1:b=this.cy;break;default:b=this.cz}var d=b+this.radius;if(!this.tHemisphere||0!=a.dim)b-=this.radius;if(b<=a.maxLeft&&d>=a.minLeft)d>=a.minRight&&
b<=a.maxRight&&(this.stack[this.sp++]=a.eleRight),a=a.eleLeft;else if(d>=a.minRight&&b<=a.maxRight)a=a.eleRight;else{if(0==this.sp)return;a=this.stack[--this.sp]}}this.leaf=a;this.leafIndex=0}});c(c$,"isWithinRadius",function(a){this.dx=a.x-this.cx;return(!this.tHemisphere||0<=this.dx)&&(this.dx=Math.abs(this.dx))<=this.radius&&(this.dy=Math.abs(a.y-this.cy))<=this.radius&&(this.dz=Math.abs(a.z-this.cz))<=this.radius},"JU.T3")}),u("J.bspt"),c$=s(function(){this.bspt=null;this.count=0;p(this,arguments)},
J.bspt,"Element"),u("J.bspt"),v(["J.bspt.Element"],"J.bspt.Leaf",["J.bspt.Node","JU.Escape"],function(){c$=s(function(){this.tuples=null;p(this,arguments)},J.bspt,"Leaf",J.bspt.Element);t(c$,function(a,b,d){this.bspt=a;this.count=0;this.tuples=Array(2);if(null!=b){for(a=d;2>a;++a)this.tuples[this.count++]=b.tuples[a],b.tuples[a]=null;b.count=d}},"J.bspt.Bspt,J.bspt.Leaf,~N");c(c$,"sort",function(a){for(var b=this.count;0<--b;)for(var d=this.tuples[b],f=J.bspt.Node.getDimensionValue(d,a),c=b;0<=--c;){var e=
this.tuples[c],h=J.bspt.Node.getDimensionValue(e,a);h>f&&(this.tuples[b]=e,this.tuples[c]=d,d=e,f=h)}},"~N");j(c$,"addTuple",function(a,b){return 2>this.count?(this.tuples[this.count++]=b,this):(new J.bspt.Node(this.bspt,a,this)).addTuple(a,b)},"~N,JU.P3");j(c$,"dump",function(a,b){for(var d=0;d<this.count;++d){for(var f=this.tuples[d],c=0;c<a;++c)b.append(".");b.append(JU.Escape.eP(f)).append("Leaf ").appendI(d).append(": ").append(f.getInfo())}},"~N,JU.SB");j(c$,"toString",function(){return"leaf:"+
this.count+"\n"})}),u("J.bspt"),v(["J.bspt.Element"],"J.bspt.Node",["java.lang.NullPointerException","J.bspt.Leaf"],function(){c$=s(function(){this.maxLeft=this.minLeft=this.dim=0;this.eleLeft=null;this.maxRight=this.minRight=0;this.eleRight=null;p(this,arguments)},J.bspt,"Node",J.bspt.Element);t(c$,function(a,b,d){this.bspt=a;b==a.treeDepth&&(a.treeDepth=b+1);if(2!=d.count)throw new NullPointerException;this.dim=b%a.dimMax;d.sort(this.dim);a=new J.bspt.Leaf(a,d,1);this.minLeft=J.bspt.Node.getDimensionValue(d.tuples[0],
this.dim);this.maxLeft=J.bspt.Node.getDimensionValue(d.tuples[d.count-1],this.dim);this.minRight=J.bspt.Node.getDimensionValue(a.tuples[0],this.dim);this.maxRight=J.bspt.Node.getDimensionValue(a.tuples[a.count-1],this.dim);this.eleLeft=d;this.eleRight=a;this.count=2},"J.bspt.Bspt,~N,J.bspt.Leaf");c(c$,"addTuple",function(a,b){var d=J.bspt.Node.getDimensionValue(b,this.dim);++this.count;d<this.maxLeft||(d>this.minRight?0:d==this.maxLeft?d==this.minRight?this.eleLeft.count<this.eleRight.count:1:d==
this.minRight?0:this.eleLeft.count<this.eleRight.count)?(d<this.minLeft?this.minLeft=d:d>this.maxLeft&&(this.maxLeft=d),this.eleLeft=this.eleLeft.addTuple(a+1,b)):(d<this.minRight?this.minRight=d:d>this.maxRight&&(this.maxRight=d),this.eleRight=this.eleRight.addTuple(a+1,b));return this},"~N,JU.P3");c(c$,"dump",function(a,b){b.append("\nnode LEFT"+a);this.eleLeft.dump(a+1,b);for(var d=0;d<a;++d)b.append("->");b.append(" RIGHT"+a);this.eleRight.dump(a+1,b)},"~N,JU.SB");c(c$,"toString",function(){return this.eleLeft.toString()+
this.dim+":\n"+this.eleRight.toString()});c$.getDimensionValue=c(c$,"getDimensionValue",function(a,b){switch(b){case 0:return a.x;case 1:return a.y;default:return a.z}},"JU.P3,~N")}),u("J.c"),v(["java.lang.Enum"],"J.c.CBK",["JU.SB"],function(){c$=A(J.c,"CBK",Enum);c$.getCallback=c(c$,"getCallback",function(a){a=a.toUpperCase();a=a.substring(0,Math.max(a.indexOf("CALLBACK"),0));for(var b,d=0,f=J.c.CBK.values();d<f.length&&((b=f[d])||1);d++)if(b.name().equalsIgnoreCase(a))return b;return null},"~S");
c$.getNameList=c(c$,"getNameList",function(){if(null==J.c.CBK.nameList){for(var a=new JU.SB,b,d=0,f=J.c.CBK.values();d<f.length&&((b=f[d])||1);d++)a.append(b.name().toLowerCase()).append("Callback;");J.c.CBK.nameList=a.toString()}return J.c.CBK.nameList});c$.nameList=null;D(c$,"ANIMFRAME",0,[]);D(c$,"APPLETREADY",1,[]);D(c$,"ATOMMOVED",2,[]);D(c$,"CLICK",3,[]);D(c$,"DRAGDROP",4,[]);D(c$,"ECHO",5,[]);D(c$,"ERROR",6,[]);D(c$,"EVAL",7,[]);D(c$,"HOVER",8,[]);D(c$,"LOADSTRUCT",9,[]);D(c$,"MEASURE",10,
[]);D(c$,"MESSAGE",11,[]);D(c$,"MINIMIZATION",12,[]);D(c$,"PICK",13,[]);D(c$,"RESIZE",14,[]);D(c$,"SCRIPT",15,[]);D(c$,"SYNC",16,[]);D(c$,"STRUCTUREMODIFIED",17,[])}),u("J.c"),v(["java.lang.Enum"],"J.c.FIL",null,function(){c$=s(function(){this.code=0;p(this,arguments)},J.c,"FIL",Enum);c(c$,"getCode",function(){return this.code});t(c$,function(a){this.code=a},"~N");D(c$,"DELETED",0,[5]);D(c$,"CREATED",1,[3]);D(c$,"CREATING_MODELSET",2,[2]);D(c$,"ZAPPED",3,[0]);D(c$,"NOT_LOADED",4,[-1])}),u("J.c"),
v(["java.lang.Enum"],"J.c.PAL",["java.lang.Byte"],function(){c$=s(function(){this.$$name=null;this.id=0;p(this,arguments)},J.c,"PAL",Enum);t(c$,function(a,b){this.$$name=a;this.id=b},"~S,~N");c$.pidOf=c(c$,"pidOf",function(a){return q(a,J.c.PAL)?a.id:q(a,Byte)?a.byteValue():J.c.PAL.UNKNOWN.id},"~O");c$.isPaletteVariable=c(c$,"isPaletteVariable",function(a){return 0!=(a&64)},"~N");c$.getPalette=c(c$,"getPalette",function(a){if(0>a.indexOf("_"))for(var b,d=0,f=J.c.PAL.values();d<f.length&&((b=f[d])||
1);d++)if(a.equalsIgnoreCase(b.$$name))return b;return 0==a.indexOf("property_")?J.c.PAL.PROPERTY:J.c.PAL.UNKNOWN},"~S");c$.getPaletteID=c(c$,"getPaletteID",function(a){if(0>a.indexOf("_"))for(var b,d=0,f=J.c.PAL.values();d<f.length&&((b=f[d])||1);d++)if(a.equalsIgnoreCase(b.$$name))return b.id;return 0==a.indexOf("property_")?J.c.PAL.PROPERTY.id:J.c.PAL.UNKNOWN.id},"~S");c$.getPaletteName=c(c$,"getPaletteName",function(a){for(var b,d=0,f=J.c.PAL.values();d<f.length&&((b=f[d])||1);d++)if(b.id==a)return b.$$name;
return null},"~N");c$.PALETTE_VOLATILE=64;c$.PALETTE_NONE=0;c$.PALETTE_CPK=1;c$.PALETTE_PARTIAL_CHARGE=2;c$.PALETTE_FORMAL_CHARGE=3;c$.PALETTE_TEMP=68;c$.PALETTE_FIXEDTEMP=5;c$.PALETTE_SURFACE=70;c$.PALETTE_STRUCTURE=7;c$.PALETTE_AMINO=8;c$.PALETTE_SHAPELY=9;c$.PALETTE_CHAIN=10;c$.PALETTE_GROUP=75;c$.PALETTE_MONOMER=76;c$.PALETTE_MOLECULE=77;c$.PALETTE_ALTLOC=14;c$.PALETTE_INSERTION=15;c$.PALETTE_JMOL=16;c$.PALETTE_RASMOL=17;c$.PALETTE_TYPE=18;c$.PALETTE_ENERGY=19;c$.PALETTE_PROPERTY=84;c$.PALETTE_VARIABLE=
85;c$.PALETTE_STRAIGHTNESS=86;c$.PALETTE_POLYMER=87;c$.argbsCpkRasmol=[16716947,33554431,50315467,62005794,83951360,113821896,126849023,149946368,165324064,184549631,203590434,226525328,249210144,268412160,285198386,285277952,343965840,377520272,411074704,427851920,452961536,480586282,497363498,514140714,598026794,796950672,899686640,956278016,1339729184];c$.argbsCpk=[4294907027,4294967295,4292476927,4291592447,4290969344,4294948277,4287664272,4281356536,4294905101,4287684688,4289979381,4289420530,
4287299328,4290750118,4293970080,4294934528,4294967088,4280283167,4286632419,4287578324,4282253056,4293322470,4290757319,4289111723,4287273415,4288445127,4292896307,4293955744,4283486288,4291330099,4286415024,4290940815,4284911503,4290609379,4294942976,4289079593,4284266705,4285542064,4278255360,4287954943,4287946976,4285776585,4283741621,4282097310,4280586127,4278877580,4278217093,4290822336,4294957455,4289099123,4284907648,4288570293,4292114944,4287889556,4282556080,4283897743,4278241536,4285584639,
4294967239,4292476871,4291297223,4288937927,4287627207,4284612551,4282777543,4281401287,4280287175,4278255516,4278249077,4278244434,4278239032,4278233892,4283286271,4283279103,4280390870,4280712619,4280706710,4279719047,4291875040,4294955299,4290296016,4289090637,4283914593,4288565173,4289420288,4285878085,4282548886,4282515558,4278222080,4285574138,4278237951,4278231551,4278226943,4278223103,4278217727,4283718898,4286078179,4287254499,4288755412,4289929172,4289929146,4289924518,4290579847,4291231846,
4291559513,4291887183,4292411461,4292870200,4293263406,4293591078];D(c$,"UNKNOWN",0,[null,255]);D(c$,"NONE",1,["none",0]);D(c$,"CPK",2,["cpk",1]);D(c$,"PARTIAL_CHARGE",3,["partialcharge",2]);D(c$,"FORMAL_CHARGE",4,["formalcharge",3]);D(c$,"TEMP",5,["temperature",68]);D(c$,"FIXEDTEMP",6,["fixedtemperature",5]);D(c$,"SURFACE",7,["surfacedistance",70]);D(c$,"STRUCTURE",8,["structure",7]);D(c$,"AMINO",9,["amino",8]);D(c$,"SHAPELY",10,["shapely",9]);D(c$,"CHAIN",11,["chain",10]);D(c$,"GROUP",12,["group",
75]);D(c$,"MONOMER",13,["monomer",76]);D(c$,"MOLECULE",14,["molecule",77]);D(c$,"ALTLOC",15,["altloc",14]);D(c$,"INSERTION",16,["insertion",15]);D(c$,"JMOL",17,["jmol",16]);D(c$,"RASMOL",18,["rasmol",17]);D(c$,"TYPE",19,["type",18]);D(c$,"ENERGY",20,["energy",19]);D(c$,"PROPERTY",21,["property",84]);D(c$,"VARIABLE",22,["variable",85]);D(c$,"STRAIGHTNESS",23,["straightness",86]);D(c$,"POLYMER",24,["polymer",87])}),u("J.c"),v(["java.lang.Enum"],"J.c.STER",null,function(){c$=s(function(){this.$$name=
null;this.$isBiColor=!1;p(this,arguments)},J.c,"STER",Enum);t(c$,function(a,b){this.$$name=a;this.$isBiColor=b},"~S,~B");c(c$,"getName",function(){return this.$$name});c(c$,"isBiColor",function(){return this.$isBiColor});c$.getStereoMode=c(c$,"getStereoMode",function(a){for(var b,d=0,f=J.c.STER.values();d<f.length&&((b=f[d])||1);d++)if(b.$$name.equalsIgnoreCase(a))return b;return null},"~S");D(c$,"NONE",0,["OFF",!1]);D(c$,"DOUBLE",1,["",!1]);D(c$,"REDCYAN",2,["REDCYAN",!0]);D(c$,"REDBLUE",3,["REDBLUE",
!0]);D(c$,"REDGREEN",4,["REDGREEN",!0]);D(c$,"CUSTOM",5,["",!0])}),u("J.c"),v(["java.lang.Enum"],"J.c.STR",null,function(){c$=s(function(){this.color=this.id=0;p(this,arguments)},J.c,"STR",Enum);t(c$,function(a,b){this.id=a;this.color=b},"~N,~N");c(c$,"getId",function(){return this.id});c(c$,"getColor",function(){return this.color});c$.getProteinStructureType=c(c$,"getProteinStructureType",function(a){for(var b,d=0,f=J.c.STR.values();d<f.length&&((b=f[d])||1);d++)if(a.equalsIgnoreCase(b.name()))return b.isProtein()?
b:J.c.STR.NOT;return J.c.STR.NOT},"~S");c(c$,"getBioStructureTypeName",function(a){return 0>this.id?"":a&&this.isProtein()?"protein":this.name()},"~B");c(c$,"isProtein",function(){return 0<=this.id&&3>=this.id||7<=this.id});D(c$,"NOT",0,[-1,4286611584]);D(c$,"NONE",1,[0,4294967295]);D(c$,"TURN",2,[1,4284514559]);D(c$,"SHEET",3,[2,4294952960]);D(c$,"HELIX",4,[3,4294901888]);D(c$,"DNA",5,[4,4289593598]);D(c$,"RNA",6,[5,4294771042]);D(c$,"CARBOHYDRATE",7,[6,4289111802]);D(c$,"HELIX310",8,[7,4288675968]);
D(c$,"HELIXALPHA",9,[8,4294901888]);D(c$,"HELIXPI",10,[9,4284481664]);D(c$,"ANNOTATION",11,[-2,0])}),u("J.c"),v(["java.lang.Enum"],"J.c.VDW",null,function(){c$=s(function(){this.pt=0;this.type2=this.type=null;p(this,arguments)},J.c,"VDW",Enum);t(c$,function(a,b,d){this.pt=a;this.type=b;this.type2=d},"~N,~S,~S");c(c$,"getVdwLabel",function(){return null==this.type?this.type2:this.type});c$.getVdwType=c(c$,"getVdwType",function(a){if(null!=a)for(var b,d=0,f=J.c.VDW.values();d<f.length&&((b=f[d])||1);d++)if(a.equalsIgnoreCase(b.type))return b;
return null},"~S");c$.getVdwType2=c(c$,"getVdwType2",function(a){if(null!=a)for(var b,d=0,f=J.c.VDW.values();d<f.length&&((b=f[d])||1);d++)if(a.equalsIgnoreCase(b.type2))return b;return null},"~S");D(c$,"JMOL",0,[0,"Jmol",null]);D(c$,"BABEL",1,[1,"Babel",null]);D(c$,"RASMOL",2,[2,"RasMol",null]);D(c$,"BABEL21",3,[3,"Babel21",null]);D(c$,"AUTO_JMOL",4,[0,null,"Jmol"]);D(c$,"AUTO_BABEL",5,[1,null,"Babel"]);D(c$,"AUTO_RASMOL",6,[2,null,"RasMol"]);D(c$,"AUTO",7,[0,"Auto",null]);D(c$,"USER",8,[-1,"User",
null]);D(c$,"ADPMAX",9,[-1,null,"adpmax"]);D(c$,"ADPMIN",10,[-1,null,"adpmin"]);D(c$,"HYDRO",11,[-1,null,"hydrophobic"]);D(c$,"BONDING",12,[-1,null,"bondingradius"]);D(c$,"TEMP",13,[-1,null,"temperature"]);D(c$,"NOJMOL",14,[-1,null,null]);D(c$,"NADA",15,[-1,null,null])}),u("J.g3d"),v(null,"J.g3d.CylinderRenderer",["JU.AU"],function(){c$=s(function(){this.shader=this.line3d=this.g3d=null;this.colixB=this.colixA=0;this.shadesB=this.shadesA=null;this.dzBf=this.dyBf=this.dxBf=this.zAf=this.yAf=this.xAf=
this.dzB=this.dyB=this.dxB=this.zA=this.yA=this.xA=0;this.tEvenDiameter=!1;this.endcaps=this.diameter=0;this.tEndcapOpen=!1;this.sinPhi=this.cosPhi=this.cosTheta=this.radius2=this.radius=this.endcapShadeIndex=this.colixEndcap=this.argbEndcap=this.zEndcap=this.yEndcap=this.xEndcap=0;this.drawBackside=this.clipped=!1;this.rasterCount=0;this.xyzfRaster=this.xyztRaster=null;this.zTip=this.yTip=this.xTip=0;p(this,arguments)},J.g3d,"CylinderRenderer");N(c$,function(){this.xyztRaster=[M(32,0),M(32,0),M(32,
0),M(32,0)];this.xyzfRaster=[E(32,0),E(32,0),E(32,0),E(32,0)]});t(c$,function(a){this.g3d=a;this.line3d=a.line3d;this.shader=a.shader},"J.g3d.Graphics3D");c(c$,"render",function(a,b,d,f,c,e,h,l,k,j){var m=x(f/2)+1,r=this.g3d,y=r.clipCode3(c-m,e-m,h-m),w=r.clipCode3(c+m,e+m,h+m),F=r.clipCode3(l-m,k-m,j-m),m=r.clipCode3(l+m,k+m,j+m);this.clipped=0!=(y|w|F|m);if(0==(y&m&w&F))if(this.dxB=l-c,this.dyB=k-e,this.dzB=j-h,1>=f)this.line3d.plotLineDelta(r.getColorArgbOrGray(a),r.getColorArgbOrGray(b),c,e,h,
this.dxB,this.dyB,this.dzB,this.clipped);else{this.drawBackside=this.clipped||2==d||0==d;this.diameter=f;this.xA=c;this.yA=e;this.zA=h;this.endcaps=d;this.shadesA=r.getShades(this.colixA=a);this.shadesB=r.getShades(this.colixB=b);this.calcArgbEndcap(!0,!1);this.calcCosSin(this.dxB,this.dyB,this.dzB);this.calcPoints(3,!1);this.interpolate(0,1,this.xyzfRaster,this.xyztRaster);this.interpolate(1,2,this.xyzfRaster,this.xyztRaster);h=this.xyzfRaster;(2==d||4==d)&&this.renderFlatEndcap(!0,!1,h);r.setZMargin(5);
a=r.width;b=r.zbuf;f=h[0];c=h[1];e=h[2];h=h[3];l=r.pixel;for(k=this.rasterCount;0<=--k;)j=h[k]>>8,y=j>>1,w=f[k],F=c[k],m=e[k],this.tEndcapOpen&&0!=this.argbEndcap&&(this.clipped?(r.plotPixelClippedArgb(this.argbEndcap,this.xEndcap+w,this.yEndcap+F,this.zEndcap-m-1,a,b,l),r.plotPixelClippedArgb(this.argbEndcap,this.xEndcap-w,this.yEndcap-F,this.zEndcap+m-1,a,b,l)):(r.plotPixelUnclipped(this.argbEndcap,this.xEndcap+w,this.yEndcap+F,this.zEndcap-m-1,a,b,l),r.plotPixelUnclipped(this.argbEndcap,this.xEndcap-
w,this.yEndcap-F,this.zEndcap+m-1,a,b,l))),this.line3d.plotLineDeltaA(this.shadesA,this.shadesB,j,this.xA+w,this.yA+F,this.zA-m,this.dxB,this.dyB,this.dzB,this.clipped),this.drawBackside&&this.line3d.plotLineDelta(this.shadesA[y],this.shadesB[y],this.xA-w,this.yA-F,this.zA+m,this.dxB,this.dyB,this.dzB,this.clipped);r.setZMargin(0);3==d&&this.renderSphericalEndcaps()}},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");c(c$,"renderBits",function(a,b,d,f,c,e,h,l,k,j){var m=x(f/2)+1,r=Math.round(c),y=Math.round(e),w=
Math.round(h),F=Math.round(l),G=Math.round(k),q=Math.round(j),p=this.g3d,t=p.clipCode3(r-m,y-m,w-m),r=p.clipCode3(r+m,y+m,w+m),y=p.clipCode3(F-m,G-m,q-m),m=p.clipCode3(F+m,G+m,q+m);this.clipped=0!=(t|r|y|m);if(0==(t&m&r&y))if(this.dxBf=l-c,this.dyBf=k-e,this.dzBf=j-h,0==f||1==f)this.line3d.plotLineDelta(p.getColorArgbOrGray(a),p.getColorArgbOrGray(b),z(c),z(e),z(h),z(this.dxBf),z(this.dyBf),z(this.dzBf),this.clipped);else{0<f&&(this.diameter=f,this.xAf=c,this.yAf=e,this.zAf=h);this.drawBackside=this.clipped||
2==d||0==d;this.xA=z(this.xAf);this.yA=z(this.yAf);this.zA=z(this.zAf);this.dxB=z(this.dxBf);this.dyB=z(this.dyBf);this.dzB=z(this.dzBf);this.shadesA=p.getShades(this.colixA=a);this.shadesB=p.getShades(this.colixB=b);this.endcaps=d;this.calcArgbEndcap(!0,!0);l=this.xyzfRaster;0<f&&this.generateBaseEllipsePrecisely(!1);2==d&&this.renderFlatEndcap(!0,!0,l);this.line3d.setLineBits(this.dxBf,this.dyBf);p.setZMargin(5);f=p.pixel;a=p.width;b=p.zbuf;c=l[0];e=l[1];h=l[2];l=l[3];for(k=this.rasterCount;0<=
--k;)j=l[k]>>8,t=j>>1,m=c[k],F=e[k],G=h[k],this.tEndcapOpen&&0!=this.argbEndcap&&(this.clipped?(p.plotPixelClippedArgb(this.argbEndcap,this.xEndcap+m,this.yEndcap+F,this.zEndcap-G-1,a,b,f),p.plotPixelClippedArgb(this.argbEndcap,this.xEndcap-m,this.yEndcap-F,this.zEndcap+G-1,a,b,f)):(p.plotPixelUnclipped(this.argbEndcap,this.xEndcap+m,this.yEndcap+F,this.zEndcap-G-1,a,b,f),p.plotPixelUnclipped(this.argbEndcap,this.xEndcap-m,this.yEndcap-F,this.zEndcap+G-1,a,b,f))),this.line3d.plotLineDeltaBits(this.shadesA,
this.shadesB,j,this.xA+m,this.yA+F,this.zA-G,this.dxB,this.dyB,this.dzB,this.clipped),this.drawBackside&&this.line3d.plotLineDelta(this.shadesA[t],this.shadesB[t],this.xA-m,this.yA-F,this.zA+G,this.dxB,this.dyB,this.dzB,this.clipped);p.setZMargin(0);3==d&&this.renderSphericalEndcaps();this.xAf+=this.dxBf;this.yAf+=this.dyBf;this.zAf+=this.dzBf}},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");c(c$,"renderCone",function(a,b,d,f,c,e,h,l,k,j,m){this.dxBf=h-(this.xAf=f);this.dyBf=l-(this.yAf=c);this.dzBf=k-(this.zAf=
e);this.xA=x(Math.floor(this.xAf));this.yA=x(Math.floor(this.yAf));this.zA=x(Math.floor(this.zAf));this.dxB=x(Math.floor(this.dxBf));this.dyB=x(Math.floor(this.dyBf));this.dzB=x(Math.floor(this.dzBf));this.xTip=h;this.yTip=l;this.zTip=k;this.colixA=a;this.shadesA=this.g3d.getShades(a);var r=this.shader.getShadeIndex(this.dxB,this.dyB,-this.dzB);a=this.g3d;f=a.pixel;c=a.width;e=a.zbuf;a.plotPixelClippedArgb(this.shadesA[r],z(h),z(l),z(k),c,e,f);this.diameter=d;if(1>=d)1==d&&this.line3d.plotLineDelta(this.colixA,
this.colixA,this.xA,this.yA,this.zA,this.dxB,this.dyB,this.dzB,this.clipped);else{this.endcaps=b;this.calcArgbEndcap(!1,!0);this.generateBaseEllipsePrecisely(m);!m&&2==this.endcaps&&this.renderFlatEndcap(!1,!0,this.xyzfRaster);a.setZMargin(5);b=this.xyztRaster[0];d=this.xyztRaster[1];h=this.xyztRaster[2];l=this.xyzfRaster[3];k=this.shadesA;for(var r=this.tEndcapOpen&&0!=this.argbEndcap,y=this.rasterCount;0<=--y;){var w=b[y],F=d[y],G=h[y],p=l[y]>>8,q=this.xAf+w,t=this.yAf+F,s=this.zAf-G,w=this.xAf-
w,F=this.yAf-F,G=this.zAf+G,u=k[0];r&&(a.plotPixelClippedArgb(this.argbEndcap,z(q),z(t),z(s),c,e,f),a.plotPixelClippedArgb(this.argbEndcap,z(w),z(F),z(G),c,e,f));0!=u&&(this.line3d.plotLineDeltaA(k,k,p,z(q),z(t),z(s),x(Math.ceil(this.xTip-q)),x(Math.ceil(this.yTip-t)),x(Math.ceil(this.zTip-s)),!0),j&&(this.line3d.plotLineDeltaA(k,k,p,z(q),z(t)+1,z(s),x(Math.ceil(this.xTip-q)),x(Math.ceil(this.yTip-t))+1,x(Math.ceil(this.zTip-s)),!0),this.line3d.plotLineDeltaA(k,k,p,z(q)+1,z(t),z(s),x(Math.ceil(this.xTip-
q))+1,x(Math.ceil(this.yTip-t)),x(Math.ceil(this.zTip-s)),!0)),!m&&!(2!=this.endcaps&&0<this.dzB)&&this.line3d.plotLineDelta(u,u,z(w),z(F),z(G),x(Math.ceil(this.xTip-w)),x(Math.ceil(this.yTip-F)),x(Math.ceil(this.zTip-G)),!0))}a.setZMargin(0)}},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~B,~B");c(c$,"generateBaseEllipsePrecisely",function(a){this.calcCosSin(this.dxBf,this.dyBf,this.dzBf);this.calcPoints(a?2:3,!0);this.interpolatePrecisely(0,1,this.xyzfRaster,this.xyztRaster);a||this.interpolatePrecisely(1,2,this.xyzfRaster,
this.xyztRaster);for(a=3;0<=--a;)for(var b=this.rasterCount;0<=--b;)this.xyzfRaster[a][b]=x(Math.floor(this.xyztRaster[a][b]))},"~B");c(c$,"calcPoints",function(a,b){this.calcRotatedPoint(0,0,b,this.xyzfRaster,this.xyztRaster);this.calcRotatedPoint(0.5,1,b,this.xyzfRaster,this.xyztRaster);3==(this.rasterCount=a)&&this.calcRotatedPoint(1,2,b,this.xyzfRaster,this.xyztRaster)},"~N,~B");c(c$,"calcCosSin",function(a,b,d){var f=a*a+b*b;if(0==f)this.cosPhi=this.cosTheta=1,this.sinPhi=0;else{var c=Math.sqrt(f),
f=Math.sqrt(f+d*d);this.cosTheta=d/f;this.cosPhi=a/c;this.sinPhi=b/c}},"~N,~N,~N");c(c$,"calcRotatedPoint",function(a,b,d,f,c){c[3][b]=a;a*=3.141592653589793;var e=Math.sin(a)*this.cosTheta,h=Math.cos(a);a=this.radius*(e*this.cosPhi-h*this.sinPhi);e=this.radius*(e*this.sinPhi+h*this.cosPhi);h=this.radius2-(a*a+e*e);h=0<h?Math.sqrt(h):0;d?(c[0][b]=a,c[1][b]=e,c[2][b]=h):(this.tEvenDiameter?(f[0][b]=x(a-0.5),f[1][b]=x(e-0.5)):(f[0][b]=x(a),f[1][b]=x(e)),f[2][b]=x(h+0.5));f[3][b]=this.shader.getShadeFp8(a,
e,h)},"~N,~N,~B,~A,~A");c(c$,"allocRaster",function(a,b,d){if(this.rasterCount>=b[0].length)for(;this.rasterCount>=b[0].length;){for(var f=4;0<=--f;)b[f]=JU.AU.doubleLengthI(b[f]);d[3]=JU.AU.doubleLengthF(d[3])}if(a)for(;this.rasterCount>=d[0].length;)for(f=3;0<=--f;)d[f]=JU.AU.doubleLengthF(d[f]);return this.rasterCount++},"~B,~A,~A");c(c$,"interpolate",function(a,b,d,f){var c=d[0],e=d[1],c=c[b]-c[a];0>c&&(c=-c);e=e[b]-e[a];0>e&&(e=-e);if(!(1>=c+e)){for(var h=this.allocRaster(!1,d,f),c=d[0],e=d[1],
l=d[3],k=f[3][a],j=f[3][b],m=4;0<=--m;){var r=(k+j)/2;this.calcRotatedPoint(r,h,!1,d,f);if(c[h]==c[a]&&e[h]==e[a])l[a]=l[a]+l[h]>>>1,k=r;else if(c[h]==c[b]&&e[h]==e[b])l[b]=l[b]+l[h]>>>1,j=r;else{this.interpolate(a,h,d,f);this.interpolate(h,b,d,f);return}}c[h]=c[a];e[h]=e[b]}},"~N,~N,~A,~A");c(c$,"interpolatePrecisely",function(a,b,d,f){var c=f[0],e=f[1],h=x(Math.floor(c[b]))-x(Math.floor(c[a]));0>h&&(h=-h);e=x(Math.floor(e[b]))-x(Math.floor(e[a]));0>e&&(e=-e);if(!(1>=h+e)){for(var e=f[3],h=e[a],
l=e[b],k=this.allocRaster(!0,d,f),c=f[0],e=f[1],j=d[3],m=4;0<=--m;){var r=(h+l)/2;this.calcRotatedPoint(r,k,!0,d,f);if(x(Math.floor(c[k]))==x(Math.floor(c[a]))&&x(Math.floor(e[k]))==x(Math.floor(e[a])))j[a]=j[a]+j[k]>>>1,h=r;else if(x(Math.floor(c[k]))==x(Math.floor(c[b]))&&x(Math.floor(e[k]))==x(Math.floor(e[b])))j[b]=j[b]+j[k]>>>1,l=r;else{this.interpolatePrecisely(a,k,d,f);this.interpolatePrecisely(k,b,d,f);return}}c[k]=c[a];e[k]=e[b]}},"~N,~N,~A,~A");c(c$,"renderFlatEndcap",function(a,b,d){var f,
c;if(b){if(0==this.dzBf||!this.g3d.setC(this.colixEndcap))return;b=this.xAf;f=this.yAf;c=this.zAf;a&&0>this.dzBf&&(b+=this.dxBf,f+=this.dyBf,c+=this.dzBf);b=z(b);f=z(f);c=z(c)}else{if(0==this.dzB||!this.g3d.setC(this.colixEndcap))return;b=this.xA;f=this.yA;c=this.zA;if(a&&0>this.dzB){if(4==this.endcaps)return;b+=this.dxB;f+=this.dyB;c+=this.dzB}}var e=d[1][0];a=d[1][0];var h=0,l=0,k=d[0],j=d[1];d=d[2];for(var m=this.rasterCount;0<--m;){var r=j[m];r<e?e=r:r>a?a=r:(r=-r,r<e?e=r:r>a&&(a=r))}for(r=e;r<=
a;++r){for(var e=2147483647,y=-2147483648,m=this.rasterCount;0<=--m;){if(j[m]==r){var w=k[m];w<e&&(e=w,h=d[m]);w>y&&(y=w,l=d[m])}j[m]==-r&&(w=-k[m],w<e&&(e=w,h=-d[m]),w>y&&(y=w,l=-d[m]))}m=y-e+1;this.g3d.setColorNoisy(this.endcapShadeIndex);this.g3d.plotPixelsClippedRaster(m,b+e,f+r,c-h-1,c-l-1,null,null)}},"~B,~B,~A");c(c$,"renderSphericalEndcaps",function(){0!=this.colixA&&this.g3d.setC(this.colixA)&&this.g3d.fillSphereXYZ(this.diameter,this.xA,this.yA,this.zA+1);0!=this.colixB&&this.g3d.setC(this.colixB)&&
this.g3d.fillSphereXYZ(this.diameter,this.xA+this.dxB,this.yA+this.dyB,this.zA+this.dzB+1)});c(c$,"calcArgbEndcap",function(a,b){this.tEvenDiameter=0==(this.diameter&1);this.radius=this.diameter/2;this.radius2=this.radius*this.radius;this.tEndcapOpen=!1;var d=b?this.dzBf:this.dzB;if(!(3==this.endcaps||0==d)){this.xEndcap=this.xA;this.yEndcap=this.yA;this.zEndcap=this.zA;var f=b?this.dxBf:this.dxB,c=b?this.dyBf:this.dyB;0<=d||!a?(this.endcapShadeIndex=this.shader.getShadeIndex(-f,-c,d),this.colixEndcap=
this.colixA,d=this.shadesA):(this.endcapShadeIndex=this.shader.getShadeIndex(f,c,-d),this.colixEndcap=this.colixB,d=this.shadesB,this.xEndcap+=this.dxB,this.yEndcap+=this.dyB,this.zEndcap+=this.dzB);56<this.endcapShadeIndex&&(this.endcapShadeIndex=56);this.argbEndcap=d[this.endcapShadeIndex];this.tEndcapOpen=1==this.endcaps}},"~B,~B")}),u("J.g3d"),H(J.g3d,"G3DRenderer"),u("J.g3d"),v(["J.api.JmolRendererInterface","JU.GData","JU.V3"],"J.g3d.Graphics3D","java.lang.NullPointerException java.util.Arrays javajs.awt.Font JU.AU J.api.Interface J.c.STER J.g3d.CylinderRenderer $.ImageRenderer $.LineRenderer $.Pixelator $.PixelatorShaded $.Platform3D $.SphereRenderer $.TextRenderer $.TextSorter $.TextString JU.C $.Normix".split(" "),
function(){c$=s(function(){this.hermite3d=this.circle3d=this.triangle3d=this.cylinder3d=this.sphere3d=this.line3d=this.platform=null;this.antialias2=this.isFullSceneAntialiasingEnabled=!1;this.strings=null;this.stringCount=0;this.anaglyphChannelBytes=null;this.$haveTranslucentObjects=this.twoPass=!1;this.zbufT=this.zbuf=this.pbufT=this.pbuf=null;this.translucencyMask=0;this.renderLow=!1;this.shadesCurrent=null;this.anaglyphLength=0;this.pixel=null;this.zMargin=0;this.aobuf=null;this.saveDiffuse=this.saveAmbient=
this.translucencyLog=this.lastRawColor=this.currentShadeIndex=0;this.shadeIndexes2Sided=this.shadeIndexes=this.vectorNormal=this.vectorAC=this.vectorAB=null;this.pass2Flag01=0;p(this,arguments)},J.g3d,"Graphics3D",JU.GData,J.api.JmolRendererInterface);N(c$,function(){this.vectorAB=new JU.V3;this.vectorAC=new JU.V3;this.vectorNormal=new JU.V3;this.shadeIndexes=Q(JU.GData.normixCount,0);this.shadeIndexes2Sided=Q(JU.GData.normixCount,0)});j(c$,"clear",function(){this.stringCount=0;this.strings=null;
J.g3d.TextRenderer.clearFontCache()});j(c$,"destroy",function(){this.releaseBuffers();this.graphicsForMetrics=this.platform=null});c(c$,"setZMargin",function(a){this.zMargin=a},"~N");t(c$,function(){K(this,J.g3d.Graphics3D,[]);for(var a=JU.GData.normixCount;0<=--a;)this.transformedVectors[a]=new JU.V3});j(c$,"initialize",function(a,b){this.vwr=a;this.apiPlatform=b;this.platform=new J.g3d.Platform3D(b);this.graphicsForMetrics=this.platform.getGraphicsForMetrics();this.line3d=new J.g3d.LineRenderer(this);
this.sphere3d=new J.g3d.SphereRenderer(this);this.cylinder3d=new J.g3d.CylinderRenderer(this)},"JV.Viewer,javajs.api.GenericPlatform");j(c$,"addRenderer",function(a){switch(a){case 1073741880:null==this.circle3d&&(this.circle3d=this.getRenderer("Circle"));break;case 553648147:null==this.hermite3d&&(this.hermite3d=this.getRenderer("Hermite"));case 1073742182:null==this.triangle3d&&(this.triangle3d=this.getRenderer("Triangle"))}},"~N");c(c$,"getRenderer",function(a){a=J.api.Interface.getOption("g3d."+
a+"Renderer",this.vwr,"render");if(null==a)throw new NullPointerException("Interface");a.set(this,this);return a},"~S");j(c$,"setWindowParameters",function(a,b,d){this.setWinParams(a,b,d);this.currentlyRendering&&this.endRendering()},"~N,~N,~B");j(c$,"checkTranslucent",function(a){a&&(this.$haveTranslucentObjects=!0);return!this.twoPass||this.twoPass&&this.isPass2==a},"~B");j(c$,"beginRendering",function(a,b,d,f){this.currentlyRendering&&this.endRendering();this.renderLow=f;if(this.windowWidth!=this.newWindowWidth||
this.windowHeight!=this.newWindowHeight||this.newAntialiasing!=this.isFullSceneAntialiasingEnabled)this.windowWidth=this.newWindowWidth,this.windowHeight=this.newWindowHeight,this.isFullSceneAntialiasingEnabled=this.newAntialiasing,this.releaseBuffers();this.setRotationMatrix(a);this.antialiasEnabled=this.antialiasThisFrame=this.newAntialiasing;this.currentlyRendering=!0;if(null!=this.strings)for(a=Math.min(this.strings.length,this.stringCount);0<=--a;)this.strings[a]=null;this.stringCount=0;this.twoPass=
!0;this.isPass2=!1;this.colixCurrent=this.pass2Flag01=0;this.$haveTranslucentObjects=!1;this.translucentCoverOnly=!b;null==this.pbuf&&(this.platform.allocateBuffers(this.windowWidth,this.windowHeight,this.antialiasThisFrame,d),this.pbuf=this.platform.pBuffer,this.zbuf=this.platform.zBuffer,this.aobuf=null);this.setWidthHeight(this.antialiasThisFrame);this.platform.clearBuffer();null!=this.backgroundImage&&this.plotImage(-2147483648,0,-2147483648,this.backgroundImage,null,0,0,0);this.textY=0},"JU.M3,~B,~B,~B");
j(c$,"setBackgroundTransparent",function(a){null!=this.platform&&this.platform.setBackgroundTransparent(a)},"~B");c(c$,"releaseBuffers",function(){this.aobuf=this.zbufT=this.pbufT=this.zbuf=this.pbuf=null;this.platform.releaseBuffers();this.line3d.clearLineCache()});j(c$,"setPass2",function(a){if(!this.$haveTranslucentObjects||!this.currentlyRendering)return!1;this.isPass2=!0;this.pass2Flag01=1;this.colixCurrent=0;if(null==this.pbufT||this.antialias2!=a)this.platform.allocateTBuffers(a),this.pbufT=
this.platform.pBufferT,this.zbufT=this.platform.zBufferT;this.antialias2=a;this.antialiasThisFrame&&!this.antialias2&&this.downsampleFullSceneAntialiasing(!0);this.platform.clearTBuffer();return!0},"~B");j(c$,"endRendering",function(){if(this.currentlyRendering){if(null!=this.pbuf){if(this.isPass2&&null!=this.pbufT)for(var a=this.pbufT.length;0<=--a;)J.g3d.Graphics3D.mergeBufferPixel(this.pbuf,a,this.pbufT[a],this.bgcolor);this.antialiasThisFrame&&this.downsampleFullSceneAntialiasing(!1)}this.platform.setBackgroundColor(this.bgcolor);
this.platform.notifyEndOfRendering();this.currentlyRendering=!1}});c$.mergeBufferPixel=c(c$,"mergeBufferPixel",function(a,b,d,f){if(0!=d){var c=a[b];if(c!=d){0==c&&(c=f);f=c&16711935;var c=c&65280,e=d&16711935,h=d&65280;switch(d>>24&15){case 0:f=e;c=h;break;case 1:f=(e<<2)+(e<<1)+e+f>>3&16711935;c=(h<<2)+ +(h<<1)+h+c>>3&65280;break;case 2:f=(e<<1)+e+f>>2&16711935;c=(h<<1)+h+c>>2&65280;break;case 3:f=(e<<2)+e+(f<<1)+f>>3&16711935;c=(h<<2)+h+(c<<1)+c>>3&65280;break;case 4:f=f+e>>1&16711935;c=c+h>>1&
65280;break;case 5:f=(e<<1)+e+(f<<2)+f>>3&16711935;c=(h<<1)+h+(c<<2)+c>>3&65280;break;case 6:f=(f<<1)+f+e>>2&16711935;c=(c<<1)+c+h>>2&65280;break;case 7:f=(f<<2)+(f<<1)+f+e>>3&16711935,c=(c<<2)+(c<<1)+c+h>>3&65280}a[b]=4278190080|f|c}}},"~A,~N,~N,~N");j(c$,"getScreenImage",function(a){var b=this.platform.bufferedImage;a&&this.releaseBuffers();return b},"~B");j(c$,"applyAnaglygh",function(a,b){switch(a){case J.c.STER.REDCYAN:this.applyCyanAnaglyph();break;case J.c.STER.CUSTOM:this.applyCustomAnaglyph(b);
break;case J.c.STER.REDBLUE:this.applyBlueAnaglyph();break;case J.c.STER.REDGREEN:this.applyGreenAnaglyph()}},"J.c.STER,~A");j(c$,"snapshotAnaglyphChannelBytes",function(){if(this.currentlyRendering)throw new NullPointerException;this.anaglyphLength=this.windowWidth*this.windowHeight;if(null==this.anaglyphChannelBytes||this.anaglyphChannelBytes.length!=this.anaglyphLength)this.anaglyphChannelBytes=Q(this.anaglyphLength,0);for(var a=this.anaglyphLength;0<=--a;)this.anaglyphChannelBytes[a]=this.pbuf[a]});
c(c$,"applyCustomAnaglyph",function(a){var b=a[0];a=a[1]&16777215;for(var d=this.anaglyphLength;0<=--d;){var c=this.anaglyphChannelBytes[d]&255,c=(c|(c|c<<8)<<8)&a;this.pbuf[d]=this.pbuf[d]&b|c}},"~A");c(c$,"applyGreenAnaglyph",function(){for(var a=this.anaglyphLength;0<=--a;)this.pbuf[a]=this.pbuf[a]&4294901760|(this.anaglyphChannelBytes[a]&255)<<8});c(c$,"applyBlueAnaglyph",function(){for(var a=this.anaglyphLength;0<=--a;)this.pbuf[a]=this.pbuf[a]&4294901760|this.anaglyphChannelBytes[a]&255});c(c$,
"applyCyanAnaglyph",function(){for(var a=this.anaglyphLength;0<=--a;){var b=this.anaglyphChannelBytes[a]&255;this.pbuf[a]=this.pbuf[a]&4294901760|b<<8|b}});j(c$,"releaseScreenImage",function(){this.platform.clearScreenBufferThreaded()});j(c$,"haveTranslucentObjects",function(){return this.$haveTranslucentObjects});c(c$,"setTempZSlab",function(a){this.zSlab=a},"~N");j(c$,"setZShade",function(a,b,d,c){a?(this.setZShade2(b,d,c),this.pixel=new J.g3d.PixelatorShaded(this)):this.pixel=new J.g3d.Pixelator(this)},
"~B,~N,~N,~N");c(c$,"downsampleFullSceneAntialiasing",function(a){var b=this.bgcolor;a&&(b+=255==(b&255)?-1:1);J.g3d.Graphics3D.downsample2d(this.pbuf,this.windowWidth,this.windowHeight,b);a&&(J.g3d.Graphics3D.downsample2dZ(this.pbuf,this.zbuf,this.windowWidth,this.windowHeight,b),this.antialiasThisFrame=!1,this.setWidthHeight(!1))},"~B");c$.downsample2d=c(c$,"downsample2d",function(a,b,d,c){var g=b<<1;if(0!=c){c&=16777215;for(var e=a.length;0<=--e;)0==a[e]&&(a[e]=c)}for(var h=(c>>2&1061109567)<<
2,h=h+((h&3233857728)>>6),l=0,k=0,e=d;0<=--e;k+=g)for(d=b;0<=--d;++l){var j=(a[k]>>2&1061109567)+(a[k++ +g]>>2&1061109567)+(a[k]>>2&1061109567)+(a[k++ +g]>>2&1061109567),j=j+((j&3233857728)>>6);j==h&&(j=c);a[l]=j&16777215|4278190080}},"~A,~N,~N,~N");c$.downsample2dZ=c(c$,"downsample2dZ",function(a,b,d,c,g){for(var e=d<<1,h=0,l=0;0<=--c;l+=e)for(var k=d;0<=--k;++h,++l){var j=Math.min(b[l],b[l+e]),j=Math.min(j,b[++l]),j=Math.min(j,b[l+e]);2147483647!=j&&(j>>=1);b[h]=a[h]==g?2147483647:j}},"~A,~A,~N,~N,~N");
c(c$,"hasContent",function(){return this.platform.hasContent()});j(c$,"setC",function(a){var b=JU.C.isColixLastAvailable(a);if(!b&&a==this.colixCurrent&&-1==this.currentShadeIndex)return!0;var d=a&30720;if(16384==d)return!1;this.renderLow&&(d=0);if(!this.checkTranslucent(0!=d))return!1;this.isPass2?(this.translucencyMask=d<<13|16777215,this.translucencyLog=d>>11):this.translucencyLog=0;this.colixCurrent=a;b&&this.argbCurrent!=this.lastRawColor&&(0==this.argbCurrent&&(this.argbCurrent=4294967295),
this.lastRawColor=this.argbCurrent,this.shader.setLastColix(this.argbCurrent,this.inGreyscaleMode));this.shadesCurrent=this.getShades(a);this.currentShadeIndex=-1;this.setColor(this.getColorArgbOrGray(a));return!0},"~N");j(c$,"drawFilledCircle",function(a,b,d,c,g,e){if(!this.isClippedZ(e)){var h=x((d+1)/2),h=c<h||c+h>=this.width||g<h||g+h>=this.height;if(!h||!this.isClippedXY(d,c,g))0!=a&&this.setC(a)&&(h?this.isClippedXY(d,c,g)||this.circle3d.plotCircleCenteredClipped(c,g,e,d):this.circle3d.plotCircleCenteredUnclipped(c,
g,e,d)),0!=b&&this.setC(b)&&(h?this.circle3d.plotFilledCircleCenteredClipped(c,g,e,d):this.circle3d.plotFilledCircleCenteredUnclipped(c,g,e,d))}},"~N,~N,~N,~N,~N,~N");j(c$,"volumeRender4",function(a,b,d,c){if(1==a)this.plotPixelClippedArgb(this.argbCurrent,b,d,c,this.width,this.zbuf,this.pixel);else if(!this.isClippedZ(c)){var g=x((a+1)/2),g=b<g||b+g>=this.width||d<g||d+g>=this.height;if(!g||!this.isClippedXY(a,b,d))g?this.circle3d.plotFilledCircleCenteredClipped(b,d,c,a):this.circle3d.plotFilledCircleCenteredUnclipped(b,
d,c,a)}},"~N,~N,~N,~N");j(c$,"fillSphereXYZ",function(a,b,d,c){switch(a){case 1:this.plotPixelClippedArgb(this.argbCurrent,b,d,c,this.width,this.zbuf,this.pixel);return;case 0:return}a<=(this.antialiasThisFrame?2E3:1E3)&&this.sphere3d.render(this.shadesCurrent,a,b,d,c,null,null,null,-1,null)},"~N,~N,~N,~N");j(c$,"volumeRender",function(a){a?(this.saveAmbient=this.getAmbientPercent(),this.saveDiffuse=this.getDiffusePercent(),this.setAmbientPercent(100),this.setDiffusePercent(0),this.addRenderer(1073741880)):
(this.setAmbientPercent(this.saveAmbient),this.setDiffusePercent(this.saveDiffuse))},"~B");j(c$,"fillSphereI",function(a,b){this.fillSphereXYZ(a,b.x,b.y,b.z)},"~N,JU.P3i");j(c$,"fillSphere",function(a,b){this.fillSphereXYZ(a,Math.round(b.x),Math.round(b.y),Math.round(b.z))},"~N,JU.P3");j(c$,"fillEllipsoid",function(a,b,d,c,g,e,h,l,k,j,m){switch(e){case 1:this.plotPixelClippedArgb(this.argbCurrent,d,c,g,this.width,this.zbuf,this.pixel);return;case 0:return}e<=(this.antialiasThisFrame?2E3:1E3)&&this.sphere3d.render(this.shadesCurrent,
e,d,c,g,h,l,k,j,m)},"JU.P3,~A,~N,~N,~N,~N,JU.M3,~A,JU.M4,~N,~A");j(c$,"drawRect",function(a,b,d,c,g,e){if(!(0!=c&&this.isClippedZ(c))){c=g-1;e-=1;g=a+c;var h=b+e;0<=b&&b<this.height&&this.drawHLine(a,b,d,c);0<=h&&h<this.height&&this.drawHLine(a,h,d,c);0<=a&&a<this.width&&this.drawVLine(a,b,d,e);0<=g&&g<this.width&&this.drawVLine(g,b,d,e)}},"~N,~N,~N,~N,~N,~N");c(c$,"drawHLine",function(a,b,d,c){0>c&&(a+=c,c=-c);0>a&&(c+=a,a=0);a+c>=this.width&&(c=this.width-1-a);var g=this.pixel,e=this.argbCurrent;
a+=this.width*b;for(b=0;b<=c;b++)d<this.zbuf[a]&&g.addPixel(a,d,e),a++},"~N,~N,~N,~N");c(c$,"drawVLine",function(a,b,d,c){0>c&&(b+=c,c=-c);0>b&&(c+=b,b=0);b+c>=this.height&&(c=this.height-1-b);a+=this.width*b;b=this.pixel;for(var g=this.argbCurrent,e=0;e<=c;e++)d<this.zbuf[a]&&b.addPixel(a,d,g),a+=this.width},"~N,~N,~N,~N");j(c$,"fillRect",function(a,b,d,c,g,e){if(!this.isClippedZ(c)){c=this.width;if(0>a){g+=a;if(0>=g)return;a=0}if(a+g>c&&(g=c-a,0>=g))return;if(0>b){e+=b;if(0>=e)return;b=0}b+e>this.height&&
(e=this.height-b);for(var h=this.argbCurrent,l=this.zbuf,k=this.pixel;0<=--e;)this.plotPixelsUnclippedCount(h,g,a,b++,d,c,l,k)}},"~N,~N,~N,~N,~N,~N");j(c$,"drawString",function(a,b,d,c,g,e,h){this.currentShadeIndex=0;null!=a&&(this.isClippedZ(e)||this.drawStringNoSlab(a,b,d,c,g,h))},"~S,javajs.awt.Font,~N,~N,~N,~N,~N");j(c$,"drawStringNoSlab",function(a,b,d,c,g,e){if(null!=a){null==this.strings&&(this.strings=Array(10));this.stringCount==this.strings.length&&(this.strings=JU.AU.doubleLength(this.strings));
var h=new J.g3d.TextString;h.setText(a,null==b?this.currentFont:this.currentFont=b,this.argbCurrent,JU.C.isColixTranslucent(e)?this.getColorArgbOrGray(e)&16777215|(e&30720)<<13:0,d,c,g);this.strings[this.stringCount++]=h}},"~S,javajs.awt.Font,~N,~N,~N,~N");j(c$,"renderAllStrings",function(a){if(null!=this.strings){2<=this.stringCount&&(null==J.g3d.Graphics3D.sort&&(J.g3d.Graphics3D.sort=new J.g3d.TextSorter),java.util.Arrays.sort(this.strings,J.g3d.Graphics3D.sort));for(var b=0;b<this.stringCount;b++){var d=
this.strings[b];this.plotText(d.x,d.y,d.z,d.argb,d.bgargb,d.text,d.font,a)}this.strings=null;this.stringCount=0}},"~O");j(c$,"plotText",function(a,b,d,c,g,e,h,l){J.g3d.TextRenderer.plot(a,b,d,c,g,e,h,this,l,this.antialiasThisFrame)},"~N,~N,~N,~N,~N,~S,javajs.awt.Font,J.api.JmolRendererInterface");j(c$,"drawImage",function(a,b,d,c,g,e,h,l){null==a||(0==h||0==l||this.isClippedZ(g))||this.plotImage(b,d,c,a,null,e,h,l)},"~O,~N,~N,~N,~N,~N,~N,~N");j(c$,"plotImage",function(a,b,d,c,g,e,h,l){this.setC(e);
this.isPass2||(this.translucencyMask=-1);0==e&&(this.argbCurrent=0);J.g3d.ImageRenderer.plotImage(a,b,d,c,this,g,this.antialiasThisFrame,this.argbCurrent,h,l)},"~N,~N,~N,~O,J.api.JmolRendererInterface,~N,~N,~N");j(c$,"setFontFid",function(a){this.currentFont=javajs.awt.Font.getFont3D(a)},"~N");j(c$,"setFont",function(a){this.currentFont=a},"javajs.awt.Font");j(c$,"drawPixel",function(a,b,d){this.plotPixelClippedArgb(this.argbCurrent,a,b,d,this.width,this.zbuf,this.pixel)},"~N,~N,~N");j(c$,"drawPoints",
function(a,b,d){if(1<d)for(var c=0.8*d*d,g=-d;g<d;g++)for(var e=-d;e<d;e++)g*g+e*e>c||(this.plotPoints(a,b,g,e),this.plotPoints(a,b,g,e));else this.plotPoints(a,b,0,0)},"~N,~A,~N");j(c$,"drawDashedLine",function(a,b,d,c){this.line3d.plotDashedLine(this.argbCurrent,a,b,d.x,d.y,d.z,c.x,c.y,c.z,!0)},"~N,~N,JU.P3i,JU.P3i");j(c$,"drawDottedLine",function(a,b){this.line3d.plotDashedLine(this.argbCurrent,2,1,a.x,a.y,a.z,b.x,b.y,b.z,!0)},"JU.P3i,JU.P3i");j(c$,"drawLineXYZ",function(a,b,d,c,g,e){this.line3d.plotLine(this.argbCurrent,
this.argbCurrent,a,b,d,c,g,e,!0)},"~N,~N,~N,~N,~N,~N");j(c$,"drawLine",function(a,b,d,c,g,e,h,l){this.setC(a)||(a=0);var k=this.argbCurrent;this.setC(b)||(b=0);(0!=a||0!=b)&&this.line3d.plotLine(k,this.argbCurrent,d,c,g,e,h,l,!0)},"~N,~N,~N,~N,~N,~N,~N,~N");j(c$,"drawLineAB",function(a,b){this.line3d.plotLine(this.argbCurrent,this.argbCurrent,a.x,a.y,a.z,b.x,b.y,b.z,!0)},"JU.P3i,JU.P3i");j(c$,"fillCylinderXYZ",function(a,b,d,c,g,e,h,l,k,j){c>this.ht3||(this.setC(a)||(a=0),this.setC(b)||(b=0),(0!=
a||0!=b)&&this.cylinder3d.render(a,b,d,c,g,e,h,l,k,j))},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");j(c$,"fillCylinderScreen",function(a,b,d,c,g,e,h,l){b<=this.ht3&&this.cylinder3d.render(this.colixCurrent,this.colixCurrent,a,b,d,c,g,e,h,l)},"~N,~N,~N,~N,~N,~N,~N,~N");j(c$,"fillCylinderScreen3I",function(a,b,d,c){b<=this.ht3&&this.cylinder3d.render(this.colixCurrent,this.colixCurrent,a,b,d.x,d.y,d.z,c.x,c.y,c.z)},"~N,~N,JU.P3i,JU.P3i,JU.P3,JU.P3,~N");j(c$,"fillCylinder",function(a,b,d,c){b<=this.ht3&&this.cylinder3d.render(this.colixCurrent,
this.colixCurrent,a,b,d.x,d.y,d.z,c.x,c.y,c.z)},"~N,~N,JU.P3i,JU.P3i");j(c$,"fillCylinderBits",function(a,b,d,c){b<=this.ht3&&this.cylinder3d.renderBits(this.colixCurrent,this.colixCurrent,a,b,d.x,d.y,d.z,c.x,c.y,c.z)},"~N,~N,JU.P3,JU.P3");j(c$,"fillConeScreen",function(a,b,d,c,g){b<=this.ht3&&this.cylinder3d.renderCone(this.colixCurrent,a,b,d.x,d.y,d.z,c.x,c.y,c.z,!1,g)},"~N,~N,JU.P3i,JU.P3i,~B");j(c$,"fillConeSceen3f",function(a,b,d,c){b<=this.ht3&&this.cylinder3d.renderCone(this.colixCurrent,a,
b,d.x,d.y,d.z,c.x,c.y,c.z,!0,!1)},"~N,~N,JU.P3,JU.P3");j(c$,"drawHermite4",function(a,b,d,c,g){this.hermite3d.renderHermiteRope(!1,a,0,0,0,b,d,c,g)},"~N,JU.P3i,JU.P3i,JU.P3i,JU.P3i");j(c$,"drawHermite7",function(a,b,d,c,g,e,h,l,k,j,m,r,y){if(0==y)this.hermite3d.renderHermiteRibbon(a,b,d,c,g,e,h,l,k,j,m,r,0);else{this.hermite3d.renderHermiteRibbon(a,b,d,c,g,e,h,l,k,j,m,r,1);var w=this.colixCurrent;this.setC(y);this.hermite3d.renderHermiteRibbon(a,b,d,c,g,e,h,l,k,j,m,r,-1);this.setC(w)}},"~B,~B,~N,JU.P3i,JU.P3i,JU.P3i,JU.P3i,JU.P3i,JU.P3i,JU.P3i,JU.P3i,~N,~N");
j(c$,"fillHermite",function(a,b,d,c,g,e,h,l){this.hermite3d.renderHermiteRope(!0,a,b,d,c,g,e,h,l)},"~N,~N,~N,~N,JU.P3i,JU.P3i,JU.P3i,JU.P3i");j(c$,"drawTriangle3C",function(a,b,d,c,g,e,h){1==(h&1)&&this.drawLine(b,c,a.x,a.y,a.z,d.x,d.y,d.z);2==(h&2)&&this.drawLine(c,e,d.x,d.y,d.z,g.x,g.y,g.z);4==(h&4)&&this.drawLine(b,e,a.x,a.y,a.z,g.x,g.y,g.z)},"JU.P3i,~N,JU.P3i,~N,JU.P3i,~N,~N");j(c$,"fillTriangleTwoSided",function(a,b,d,c,g,e,h,l,k,j){this.setColorNoisy(this.getShadeIndex(a));this.triangle3d.fillTriangleXYZ(b,
d,c,g,e,h,l,k,j,!1)},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");j(c$,"fillTriangle3f",function(a,b,d,c){var g=this.getShadeIndexP3(a,b,d);c?this.setColorNoisy(g):this.setColor(this.shadesCurrent[g]);this.triangle3d.fillTriangleP3f(a,b,d,!1)},"JU.P3,JU.P3,JU.P3,~B");j(c$,"fillTriangle3i",function(a,b,d,c,g,e,h){h&&(c=this.vectorAB,c.set(b.x-a.x,b.y-a.y,b.z-a.z),null==d?c=this.shader.getShadeIndex(-c.x,-c.y,c.z):(this.vectorAC.set(d.x-a.x,d.y-a.y,d.z-a.z),c.cross(c,this.vectorAC),c=0<=c.z?this.shader.getShadeIndex(-c.x,
-c.y,c.z):this.shader.getShadeIndex(c.x,c.y,-c.z)),56<c&&(c=56),this.setColorNoisy(c));this.triangle3d.fillTriangleP3i(a,b,d,!1)},"JU.P3i,JU.P3i,JU.P3i,JU.T3,JU.T3,JU.T3,~B");j(c$,"fillTriangle3CN",function(a,b,d,c,g,e,h,l,k){if(!this.isPass2&&d==e&&d==k&&b==g&&b==l){d=this.getShadeIndex(d);if(b!=this.colixCurrent||this.currentShadeIndex!=d)this.currentShadeIndex=-1,this.setC(b),this.setColorNoisy(d);b=!1}else this.setTriangleTranslucency(b,g,l),this.triangle3d.setGouraud(this.getShades(b)[this.getShadeIndex(d)],
this.getShades(g)[this.getShadeIndex(e)],this.getShades(l)[this.getShadeIndex(k)]),b=!0;this.triangle3d.fillTriangleP3i(a,c,h,b)},"JU.P3i,~N,~N,JU.P3i,~N,~N,JU.P3i,~N,~N");c(c$,"getShadeIndex",function(a){return-1E4==a||9999==a?J.g3d.Graphics3D.nullShadeIndex:0>a?this.shadeIndexes2Sided[~a]:this.shadeIndexes[a]},"~N");c(c$,"setTriangleTranslucency",function(a,b,d){this.isPass2&&(a&=14336,b&=14336,d&=14336,this.translucencyMask=(JU.GData.roundInt(x((a+b+d)/3))&30720)<<13|16777215)},"~N,~N,~N");j(c$,
"drawQuadrilateral",function(a,b,d,c,g){this.setC(a);this.drawLineAB(b,d);this.drawLineAB(d,c);this.drawLineAB(c,g);this.drawLineAB(g,b)},"~N,JU.P3i,JU.P3i,JU.P3i,JU.P3i");j(c$,"fillQuadrilateral",function(a,b,d,c){this.setColorNoisy(this.getShadeIndexP3(a,b,d));this.triangle3d.fillTriangleP3f(a,b,d,!1);this.triangle3d.fillTriangleP3f(a,d,c,!1)},"JU.P3,JU.P3,JU.P3,JU.P3");j(c$,"drawSurface",function(){},"JU.MeshSurface,~N");j(c$,"plotPixelClippedP3i",function(a){this.plotPixelClippedArgb(this.argbCurrent,
a.x,a.y,a.z,this.width,this.zbuf,this.pixel)},"JU.P3i");c(c$,"plotPixelClippedArgb",function(a,b,d,c,g,e,h){this.isClipped3(b,d,c)||(b=d*g+b,c<e[b]&&h.addPixel(b,c,a))},"~N,~N,~N,~N,~N,~A,J.g3d.Pixelator");c(c$,"plotPixelUnclipped",function(a,b,d,c,g,e,h){b=d*g+b;c<e[b]&&h.addPixel(b,c,a)},"~N,~N,~N,~N,~N,~A,J.g3d.Pixelator");j(c$,"plotImagePixel",function(a,b,d,c,g,e,h,l,k,j,m){0>b||(b>=h||0>d||d>=l)||(b=d*h+b,c<k[b]&&(8==g?j.addPixel(b,c,a):(g+=m,7>=g&&this.shadeTextPixel(b,c,a,e,g,k))))},"~N,~N,~N,~N,~N,~N,~N,~N,~A,~O,~N");
c(c$,"plotPixelsClipped",function(a,b,d,c,g,e,h,l,k){if(!(0>c||c>=h||d>=e))if(0>d&&(b+=d,d=0),b+d>e&&(b=e-d),!(0>=b)){d=c*e+d;for(b=d+b;d<b;)g<l[d]&&k.addPixel(d,g,a),d++}},"~N,~N,~N,~N,~N,~N,~N,~A,J.g3d.Pixelator");c(c$,"plotPixelsClippedRaster",function(a,b,d,c,g,e,h){var l,k;if(!(0>=a||0>d||d>=this.height||b>=this.width||c<(k=this.slab)&&g<k||c>(l=this.depth)&&g>l)){var j=this.zbuf,m=(b<<16)+(d<<1)^858993459,r=(c<<10)+512;c=g-c;g=x(a/2);c=JU.GData.roundInt(x(((c<<10)+(0<=c?g:-g))/a));if(0>b){b=
-b;r+=c*b;a-=b;if(0>=a)return;b=0}a+b>this.width&&(a=this.width-b);b=d*this.width+b;d=this.pixel;if(null==e){e=this.argbNoisyDn;g=this.argbNoisyUp;for(var y=this.argbCurrent;0<=--a;){h=r>>10;if(h>=k&&h<=l&&h<j[b]){var m=(m<<16)+(m<<1)+m&2147483647,w=m>>16&7;d.addPixel(b,h,0==w?e:1==w?g:y)}++b;r+=c}}else{m=e.r<<8;g=x((h.r-e.r<<8)/a);y=e.g;w=x((h.g-y)/a);e=e.b;for(var F=x((h.b-e)/a);0<=--a;)h=r>>10,h>=k&&(h<=l&&h<j[b])&&d.addPixel(b,h,4278190080|m&16711680|y&65280|e>>8&255),++b,r+=c,m+=g,y+=w,e+=F}}},
"~N,~N,~N,~N,~N,JU.Rgb16,JU.Rgb16");c(c$,"plotPixelsUnclippedRaster",function(a,b,d,c,g,e,h){if(!(0>=a)){var l=((b<<16)+(d<<1)^858993459)&2147483647,k=(c<<10)+512;c=g-c;g=x(a/2);c=JU.GData.roundInt(x(((c<<10)+(0<=c?g:-g))/a));b=d*this.width+b;d=this.zbuf;g=this.pixel;if(null==e){e=this.argbNoisyDn;for(var j=this.argbNoisyUp,m=this.argbCurrent;0<=--a;){h=k>>10;if(h<d[b]){var l=(l<<16)+(l<<1)+l&2147483647,r=l>>16&7;g.addPixel(b,h,0==r?e:1==r?j:m)}++b;k+=c}}else{l=e.r<<8;j=JU.GData.roundInt(x((h.r-e.r<<
8)/a));m=e.g;r=JU.GData.roundInt(x((h.g-m)/a));e=e.b;for(var y=JU.GData.roundInt(x((h.b-e)/a));0<=--a;)h=k>>10,h<d[b]&&g.addPixel(b,h,4278190080|l&16711680|m&65280|e>>8&255),++b,k+=c,l+=j,m+=r,e+=y}}},"~N,~N,~N,~N,~N,JU.Rgb16,JU.Rgb16");c(c$,"plotPixelsUnclippedCount",function(a,b,d,c,g,e,h,l){for(d=c*e+d;0<=--b;)g<h[d]&&l.addPixel(d,g,a),++d},"~N,~N,~N,~N,~N,~N,~A,J.g3d.Pixelator");c(c$,"plotPoints",function(a,b,d,c){var g=this.pixel,e=this.argbCurrent,h=this.zbuf,l=this.width,k=this.antialiasThisFrame;
for(a*=3;0<a;){var j=b[--a],m=b[--a]+c,r=b[--a]+d;if(!this.isClipped3(r,m,j)){var y=m*l+r++;j<h[y]&&g.addPixel(y,j,e);k&&(y=m*l+r,!this.isClipped3(r,m,j)&&j<h[y]&&g.addPixel(y,j,e),y=++m*l+r,!this.isClipped3(r,m,j)&&j<h[y]&&g.addPixel(y,j,e),y=m*l+--r,!this.isClipped3(r,m,j)&&j<h[y]&&g.addPixel(y,j,e))}}},"~N,~A,~N,~N");c(c$,"setColorNoisy",function(a){this.currentShadeIndex=a;this.argbCurrent=this.shadesCurrent[a];this.argbNoisyUp=this.shadesCurrent[63>a?a+1:63];this.argbNoisyDn=this.shadesCurrent[0<
a?a-1:0]},"~N");c(c$,"getShadeIndexP3",function(a,b,d){this.vectorAB.sub2(b,a);this.vectorAC.sub2(d,a);a=this.vectorNormal;a.cross(this.vectorAB,this.vectorAC);return 0<=a.z?this.shader.getShadeIndex(-a.x,-a.y,a.z):this.shader.getShadeIndex(a.x,a.y,-a.z)},"JU.P3,JU.P3,JU.P3");j(c$,"renderBackground",function(a){null!=this.backgroundImage&&this.plotImage(-2147483648,0,-2147483648,this.backgroundImage,a,0,0,0)},"J.api.JmolRendererInterface");j(c$,"drawAtom",function(a){this.fillSphereXYZ(a.sD,a.sX,
a.sY,a.sZ)},"JM.Atom");j(c$,"getExportType",function(){return 0});j(c$,"getExportName",function(){return null});c(c$,"canDoTriangles",function(){return!0});c(c$,"isCartesianExport",function(){return!1});j(c$,"initializeExporter",function(){return null},"JV.Viewer,~N,JU.GData,java.util.Map");j(c$,"finalizeOutput",function(){return null});j(c$,"drawBond",function(){},"JU.P3,JU.P3,~N,~N,~N,~N,~N");j(c$,"drawEllipse",function(){return!1},"JU.P3,JU.P3,JU.P3,~B,~B");c(c$,"getPrivateKey",function(){return 0});
j(c$,"clearFontCache",function(){J.g3d.TextRenderer.clearFontCache()});c(c$,"setRotationMatrix",function(a){for(var b=JU.Normix.getVertexVectors(),d=JU.GData.normixCount;0<=--d;){var c=this.transformedVectors[d];a.rotate2(b[d],c);this.shadeIndexes[d]=this.shader.getShadeB(c.x,-c.y,c.z);this.shadeIndexes2Sided[d]=0<=c.z?this.shadeIndexes[d]:this.shader.getShadeB(-c.x,c.y,-c.z)}},"JU.M3");j(c$,"renderCrossHairs",function(a,b,d,c,g){b=this.isAntialiased();this.setC(0>g?10:100<g?11:23);g=Math.max(Math.min(this.width,
Math.round(c.x)),0);d=Math.max(Math.min(this.height,Math.round(c.y)),0);var e=Math.round(c.z)+1,h=b?8:4,l=b?20:10;b=b?2:1;this.drawRect(g-h,d,e,0,l,b);this.drawRect(g,d-h,e,0,b,l);this.drawRect(g-h,d-h,e,0,l,l);h=l;l>>=1;this.setC(a[1]<c.x?21:11);this.drawRect(g-h,d,e,0,l,b);this.setC(a[0]>c.x?21:11);this.drawRect(g+l,d,e,0,l,b);this.setC(a[3]<c.y?21:11);this.drawRect(g,d-h,e,0,b,l);this.setC(a[2]>c.y?21:11);this.drawRect(g,d+l,e,0,b,l)},"~A,~N,~N,JU.P3,~N");j(c$,"initializeOutput",function(){return!1},
"JV.Viewer,~N,java.util.Map");c(c$,"shadeTextPixel",function(a,b,d,c,g,e){0!=c&&J.g3d.Graphics3D.mergeBufferPixel(this.pbuf,a,c,this.bgcolor);J.g3d.Graphics3D.mergeBufferPixel(this.pbuf,a,d&16777215|g<<24,this.bgcolor);e[a]=b},"~N,~N,~N,~N,~N,~A");C(c$,"sort",null,"nullShadeIndex",50)}),u("J.g3d"),c$=A(J.g3d,"ImageRenderer"),c$.plotImage=c(c$,"plotImage",function(a,b,d,c,g,e,h,l,k,j){l=(h=-2147483648==a)?g.bgcolor:l;h&&(a=0,d=2147483646,k=g.width,j=g.height);if(!(0>=a+k||a>=g.width||0>=b+j||b>=g.height))if(c=
g.apiPlatform.drawImageToBuffer(null,g.platform.offscreenImage,c,k,j,h?l:0),null!=c){h=g.zbuf;var m=g.width,r=g.pixel,y=g.height,w=g.translucencyLog;if(null!=e||0>a||a+k>m||0>b||b+j>y){null==e&&(e=g);for(var F=g=0;g<j;g++)for(var G=0;G<k;G++)e.plotImagePixel(c[F++],a+G,b+g,d,8,l,m,y,h,r,w)}else{F=g=0;for(a=b*m+a;g<j;g++,a+=m-k)for(G=0;G<k;G++,a++)d<h[a]&&r.addPixel(a,d,c[F++])}}},"~N,~N,~N,~O,J.g3d.Graphics3D,J.api.JmolRendererInterface,~B,~N,~N,~N"),u("J.g3d"),v(["java.util.Hashtable"],"J.g3d.LineRenderer",
["java.lang.Float","JU.BS"],function(){c$=s(function(){this.lineBits=this.shader=this.g3d=null;this.slope=0;this.lineTypeX=!1;this.nBits=0;this.slopeKey=this.lineCache=null;this.cc2=this.cc1=this.z2t=this.y2t=this.x2t=this.z1t=this.y1t=this.x1t=0;p(this,arguments)},J.g3d,"LineRenderer");N(c$,function(){this.lineCache=new java.util.Hashtable});t(c$,function(a){this.g3d=a;this.shader=a.shader},"J.g3d.Graphics3D");c(c$,"setLineBits",function(a,b){this.slope=0!=a?b/a:0<=b?3.4028235E38:-3.4028235E38;this.nBits=
(this.lineTypeX=1>=this.slope&&-1<=this.slope)?this.g3d.width:this.g3d.height;this.slopeKey=Float.$valueOf(this.slope);if(this.lineCache.containsKey(this.slopeKey))this.lineBits=this.lineCache.get(this.slopeKey);else{this.lineBits=JU.BS.newN(this.nBits);b=Math.abs(b);a=Math.abs(a);if(b>a){var d=a;a=b;b=d}for(var d=0,c=a+a,g=b+b,e=0;e<this.nBits;e++)d+=g,d>a&&(this.lineBits.set(e),d-=c);this.lineCache.put(this.slopeKey,this.lineBits)}},"~N,~N");c(c$,"clearLineCache",function(){this.lineCache.clear()});
c(c$,"plotLine",function(a,b,d,c,g,e,h,l,k){this.x1t=d;this.x2t=e;this.y1t=c;this.y2t=h;this.z1t=g;this.z2t=l;if(k)switch(this.getTrimmedLine()){case 0:k=!1;break;case 2:return}this.plotLineClipped(a,b,d,c,g,e-d,h-c,l-g,k,0,0)},"~N,~N,~N,~N,~N,~N,~N,~N,~B");c(c$,"plotLineDelta",function(a,b,d,c,g,e,h,l,k){this.x1t=d;this.x2t=d+e;this.y1t=c;this.y2t=c+h;this.z1t=g;this.z2t=g+l;if(k)switch(this.getTrimmedLine()){case 2:return;case 0:k=!1}this.plotLineClipped(a,b,d,c,g,e,h,l,k,0,0)},"~N,~N,~N,~N,~N,~N,~N,~N,~B");
c(c$,"plotLineDeltaA",function(a,b,d,c,g,e,h,l,k,j){this.x1t=c;this.x2t=c+h;this.y1t=g;this.y2t=g+l;this.z1t=e;this.z2t=e+k;if(j)switch(this.getTrimmedLine()){case 2:return;case 0:j=!1}this.plotLineClippedA(a,b,d,c,g,e,h,l,k,j,0,0)},"~A,~A,~N,~N,~N,~N,~N,~N,~N,~B");c(c$,"plotLineDeltaBits",function(a,b,d,c,g,e,h,l,k,j){this.x1t=c;this.x2t=c+h;this.y1t=g;this.y2t=g+l;this.z1t=e;this.z2t=e+k;j&&2==this.getTrimmedLine()||this.plotLineClippedBits(a,b,d,c,g,e,h,l,k,0,0)},"~A,~A,~N,~N,~N,~N,~N,~N,~N,~B");
c(c$,"plotDashedLine",function(a,b,d,c,g,e,h,l,k,j){this.x1t=c;this.x2t=h;this.y1t=g;this.y2t=l;this.z1t=e;this.z2t=k;if(j)switch(this.getTrimmedLine()){case 2:return;case 0:j=!1}this.plotLineClipped(a,a,c,g,e,h-c,l-g,k-e,j,b,d)},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~B");c(c$,"getTrimmedLine",function(){this.cc1=this.g3d.clipCode3(this.x1t,this.y1t,this.z1t);this.cc2=this.g3d.clipCode3(this.x2t,this.y2t,this.z2t);if(0==(this.cc1|this.cc2))return 0;var a=this.g3d.xLast,b=this.g3d.yLast,d=this.g3d.slab,c=this.g3d.depth;
do{if(0!=(this.cc1&this.cc2))return 2;var g=this.x2t-this.x1t,e=this.y2t-this.y1t,h=this.z2t-this.z1t;0!=this.cc1?(0!=(this.cc1&8)?(this.y1t+=z(-this.x1t*e/g),this.z1t+=z(-this.x1t*h/g),this.x1t=0):0!=(this.cc1&4)?(this.y1t+=z((a-this.x1t)*e/g),this.z1t+=z((a-this.x1t)*h/g),this.x1t=a):0!=(this.cc1&2)?(this.x1t+=z(-this.y1t*g/e),this.z1t+=z(-this.y1t*h/e),this.y1t=0):0!=(this.cc1&1)?(this.x1t+=z((b-this.y1t)*g/e),this.z1t+=z((b-this.y1t)*h/e),this.y1t=b):0!=(this.cc1&32)?(this.x1t+=z((d-this.z1t)*
g/h),this.y1t+=z((d-this.z1t)*e/h),this.z1t=d):(this.x1t+=z((c-this.z1t)*g/h),this.y1t+=z((c-this.z1t)*e/h),this.z1t=c),this.cc1=this.g3d.clipCode3(this.x1t,this.y1t,this.z1t)):(0!=(this.cc2&8)?(this.y2t+=z(-this.x2t*e/g),this.z2t+=z(-this.x2t*h/g),this.x2t=0):0!=(this.cc2&4)?(this.y2t+=z((a-this.x2t)*e/g),this.z2t+=z((a-this.x2t)*h/g),this.x2t=a):0!=(this.cc2&2)?(this.x2t+=z(-this.y2t*g/e),this.z2t+=z(-this.y2t*h/e),this.y2t=0):0!=(this.cc2&1)?(this.x2t+=z((b-this.y2t)*g/e),this.z2t+=z((b-this.y2t)*
h/e),this.y2t=b):0!=(this.cc2&32)?(this.x2t+=z((d-this.z2t)*g/h),this.y2t+=z((d-this.z2t)*e/h),this.z2t=d):(this.x2t+=z((c-this.z2t)*g/h),this.y2t+=z((c-this.z2t)*e/h),this.z2t=c),this.cc2=this.g3d.clipCode3(this.x2t,this.y2t,this.z2t))}while(0!=(this.cc1|this.cc2));return 1});c(c$,"plotLineClipped",function(a,b,d,c,g,e,h,l,k,j,m){var r=this.g3d.zbuf,y=this.g3d.width,w=0;0==j&&(m=2147483647,j=1);var F=c*y+d,G=this.g3d.bufferSize,q=this.g3d.pixel;0!=a&&(!k&&0<=F&&F<G&&g<r[F])&&q.addPixel(F,g,a);if(!(0==
e&&0==h)){k=1;var p=y;d+=e;var t=c+h;0>e&&(e=-e,k=-1);0>h&&(h=-h,p=-y);y=e+e;c=h+h;g<<=10;if(h<=e){var s=e-1;0>l&&(s=-s);l=x(((l<<10)+s)/e);h=0;s=Math.abs(d-this.x2t)-1;d=Math.abs(d-this.x1t)-1;for(var t=e-1,u=x(t/2);--t>=s&&!(t==u&&(a=b,0==a));){F+=k;g+=l;h+=c;h>e&&(F+=p,h-=y);if(0!=a&&t<d&&0<=F&&F<G&&w<m){var v=g>>10;v<r[F]&&q.addPixel(F,v,a)}w=(w+1)%j}}else{s=h-1;0>l&&(s=-s);l=x(((l<<10)+s)/h);e=0;s=Math.abs(t-this.y2t)-1;d=Math.abs(t-this.y1t)-1;t=h-1;for(u=x(t/2);--t>=s&&!(t==u&&(a=b,0==a));)F+=
p,g+=l,e+=y,e>h&&(F+=k,e-=c),0!=a&&(t<d&&0<=F&&F<G&&w<m)&&(v=g>>10,v<r[F]&&q.addPixel(F,v,a)),w=(w+1)%j}}},"~N,~N,~N,~N,~N,~N,~N,~N,~B,~N,~N");c(c$,"plotLineClippedA",function(a,b,d,c,g,e,h,l,k,j,m,r){var y=this.g3d.zbuf,w=this.g3d.width,F=0;0==m&&(r=2147483647,m=1);var G=g*w+c,q=this.g3d.bufferSize,p=63>d?d+1:d,t=0<d?d-1:d,s=a[p],u=a[t],v=b[d],p=b[p];b=b[t];a=a[d];d=this.g3d.pixel;0!=a&&(!j&&0<=G&&G<q&&e<y[G])&&d.addPixel(G,e,a);if(!(0==h&&0==l)){j=1;t=w;c+=h;var z=g+l;0>h&&(h=-h,j=-1);0>l&&(l=-l,
t=-w);w=h+h;g=l+l;e<<=10;if(l<=h){var A=h-1;0>k&&(A=-A);k=x(((k<<10)+A)/h);l=0;A=Math.abs(c-this.x2t)-1;c=Math.abs(c-this.x1t)-1;for(var z=h-1,B=x(z/2);--z>=A;){if(z==B){a=v;if(0==a)break;s=p;u=b}G+=j;e+=k;l+=g;l>h&&(G+=t,l-=w);if(0!=a&&z<c&&0<=G&&G<q&&F<r){var C=e>>10;if(C<y[G]){var D=this.shader.nextRandom8Bit();d.addPixel(G,C,85>D?u:170<D?s:a)}}F=(F+1)%m}}else{A=l-1;0>k&&(A=-A);k=x(((k<<10)+A)/l);h=0;A=Math.abs(z-this.y2t)-1;c=Math.abs(z-this.y1t)-1;z=l-1;for(B=x(z/2);--z>=A;){if(z==B){a=v;if(0==
a)break;s=p;u=b}G+=t;e+=k;h+=w;h>l&&(G+=j,h-=g);0!=a&&(z<c&&0<=G&&G<q&&F<r)&&(C=e>>10,C<y[G]&&(D=this.g3d.shader.nextRandom8Bit(),d.addPixel(G,C,85>D?u:170<D?s:a)));F=(F+1)%m}}}},"~A,~A,~N,~N,~N,~N,~N,~N,~N,~B,~N,~N");c(c$,"plotLineClippedBits",function(a,b,d,c,g,e,h,l,k,j,m){var r=this.g3d.zbuf,y=this.g3d.width,w=0;0==j&&(m=2147483647,j=1);var F=63>d?d+1:d,G=0<d?d-1:d,p=a[d],q=a[F],t=a[G];d=b[d];F=b[F];b=b[G];G=g*y+c;a=this.g3d.bufferSize;var s,u,v,A;this.lineTypeX?(s=c,u=this.x1t,v=this.x2t,c+=
x(h/2),A=g=0<=h?1:-1,y=0<=l?y:-y,h=k/Math.abs(h)):(s=g,u=this.y1t,v=this.y2t,c=g+x(l/2),g=0<=l?1:-1,A=0<=l?y:-y,y=0<=h?1:-1,h=k/Math.abs(l));l=!1;k=this.g3d.pixel;for(var C=s;;C+=g,s+=g){C==u&&(l=!0);if(C==c){p=d;if(0==p)break;q=F;t=b}if(0!=p&&(l&&0<=G&&G<a&&w<m)&&e<r[G]){var B=this.shader.nextRandom8Bit();k.addPixel(G,z(e),85>B?t:170<B?q:p)}if(C==v)break;w=(w+1)%j;for(G+=A;0>s;)s+=this.nBits;this.lineBits.get(s%this.nBits)&&(G+=y);e+=h}},"~A,~A,~N,~N,~N,~N,~N,~N,~N,~N,~N");C(c$,"VISIBILITY_UNCLIPPED",
0,"VISIBILITY_CLIPPED",1,"VISIBILITY_OFFSCREEN",2)}),u("J.g3d"),v(null,"J.g3d.Pixelator",["J.g3d.Graphics3D"],function(){c$=s(function(){this.g=null;p(this,arguments)},J.g3d,"Pixelator");t(c$,function(a){this.g=a},"J.g3d.Graphics3D");c(c$,"clearPixel",function(a,b){!this.g.isPass2&&this.g.zbuf[a]>b&&(this.g.zbuf[a]=2147483647)},"~N,~N");c(c$,"addPixel",function(a,b,d){this.addPixel1(a,b,d)},"~N,~N,~N");c(c$,"addPixel1",function(a,b,d){if(this.g.isPass2){var c=this.g.zbufT[a];if(b<c){var g=this.g.pbufT[a];
!this.g.translucentCoverOnly&&(0!=g&&c-b>this.g.zMargin)&&J.g3d.Graphics3D.mergeBufferPixel(this.g.pbuf,a,g,this.g.bgcolor);this.g.zbufT[a]=b;this.g.pbufT[a]=d&this.g.translucencyMask}else b!=c&&!this.g.translucentCoverOnly&&b-c>this.g.zMargin&&J.g3d.Graphics3D.mergeBufferPixel(this.g.pbuf,a,d&this.g.translucencyMask,this.g.bgcolor)}else this.g.zbuf[a]=b,this.g.pbuf[a]=d},"~N,~N,~N")}),u("J.g3d"),v(["J.g3d.Pixelator"],"J.g3d.PixelatorShaded",null,function(){c$=A(J.g3d,"PixelatorShaded",J.g3d.Pixelator);
j(c$,"addPixel",function(a,b,d){if(!(b>this.g.zDepth)){if(b<=this.g.zDepth&&b>=this.g.zSlab){var c=(d&65280)>>8,g=(d&16711680)>>16,e=d&4278190080,h=(this.g.zDepth-b)/(this.g.zDepth-this.g.zSlab);if(1<this.g.zShadePower)for(var l=0;l<this.g.zShadePower;l++)h*=h;d=this.g.zShadeR+z(h*((d&255)-this.g.zShadeR));c=this.g.zShadeG+z(h*(c-this.g.zShadeG));g=this.g.zShadeB+z(h*(g-this.g.zShadeB));d=g<<16|c<<8|d|e}this.addPixel1(a,b,d)}},"~N,~N,~N")}),u("J.g3d"),c$=s(function(){this.bufferSizeT=this.bufferSize=
this.bufferHeight=this.bufferWidth=this.windowSize=this.windowHeight=this.windowWidth=0;this.zBufferT=this.zBuffer=this.pBufferT=this.pBuffer=this.bufferedImage=null;this.heightOffscreen=this.widthOffscreen=0;this.apiPlatform=this.graphicsForTextOrImage=this.offscreenImage=null;p(this,arguments)},J.g3d,"Platform3D"),t(c$,function(a){this.apiPlatform=a},"javajs.api.GenericPlatform"),c(c$,"getGraphicsForMetrics",function(){return this.apiPlatform.getGraphics(this.allocateOffscreenImage(1,1))}),c(c$,
"allocateTBuffers",function(a){this.bufferSizeT=a?this.bufferSize:this.windowSize;this.zBufferT=E(this.bufferSizeT,0);this.pBufferT=E(this.bufferSizeT,0)},"~B"),c(c$,"allocateBuffers",function(a,b,d,c){this.windowWidth=a;this.windowHeight=b;this.windowSize=a*b;d&&(a*=2,b*=2);this.bufferWidth=a;this.bufferHeight=b;this.bufferSize=this.bufferWidth*this.bufferHeight;this.zBuffer=E(this.bufferSize,0);this.pBuffer=E(this.bufferSize,0);this.bufferedImage=this.apiPlatform.allocateRgbImage(this.windowWidth,
this.windowHeight,this.pBuffer,this.windowSize,J.g3d.Platform3D.backgroundTransparent,c)},"~N,~N,~B,~B"),c(c$,"releaseBuffers",function(){this.windowWidth=this.windowHeight=this.bufferWidth=this.bufferHeight=this.bufferSize=-1;null!=this.bufferedImage&&(this.apiPlatform.flushImage(this.bufferedImage),this.bufferedImage=null);this.zBufferT=this.pBufferT=this.zBuffer=this.pBuffer=null}),c(c$,"hasContent",function(){for(var a=this.bufferSize;0<=--a;)if(2147483647!=this.zBuffer[a])return!0;return!1}),
c(c$,"clearScreenBuffer",function(){for(var a=this.bufferSize;0<=--a;)this.zBuffer[a]=2147483647,this.pBuffer[a]=0}),c(c$,"setBackgroundColor",function(a){if(null!=this.pBuffer)for(var b=this.bufferSize;0<=--b;)0==this.pBuffer[b]&&(this.pBuffer[b]=a)},"~N"),c(c$,"clearTBuffer",function(){for(var a=this.bufferSizeT;0<=--a;)this.zBufferT[a]=2147483647,this.pBufferT[a]=0}),c(c$,"clearBuffer",function(){this.clearScreenBuffer()}),c(c$,"clearScreenBufferThreaded",function(){}),c(c$,"notifyEndOfRendering",
function(){this.apiPlatform.notifyEndOfRendering()}),c(c$,"getGraphicsForTextOrImage",function(a,b){if(a>this.widthOffscreen||b>this.heightOffscreen)null!=this.offscreenImage&&(this.apiPlatform.disposeGraphics(this.graphicsForTextOrImage),this.apiPlatform.flushImage(this.offscreenImage)),a>this.widthOffscreen&&(this.widthOffscreen=a),b>this.heightOffscreen&&(this.heightOffscreen=b),this.offscreenImage=this.allocateOffscreenImage(this.widthOffscreen,this.heightOffscreen),this.graphicsForTextOrImage=
this.apiPlatform.getStaticGraphics(this.offscreenImage,J.g3d.Platform3D.backgroundTransparent);return this.graphicsForTextOrImage},"~N,~N"),c(c$,"allocateOffscreenImage",function(a,b){return this.apiPlatform.newOffScreenImage(a,b)},"~N,~N"),c(c$,"setBackgroundTransparent",function(a){J.g3d.Platform3D.backgroundTransparent=a},"~B"),C(c$,"backgroundTransparent",!1),u("J.g3d"),v(["JU.P3"],"J.g3d.SphereRenderer",null,function(){c$=s(function(){this.shader=this.g3d=null;this.diameter=this.z=this.y=this.x=
this.maxZ=this.minZ=this.maxY=this.minY=this.maxX=this.minX=0;this.mDeriv=this.coef=this.mat=this.zroot=this.shades=null;this.planeShade=this.selectedOctant=0;this.zbuf=null;this.offsetPbufBeginLine=this.slab=this.depth=this.height=this.width=0;this.dxyz=this.planeShades=this.ptTemp=null;p(this,arguments)},J.g3d,"SphereRenderer");N(c$,function(){this.zroot=ba(2,0);this.ptTemp=new JU.P3;this.planeShades=E(3,0);this.dxyz=M(3,3,0)});t(c$,function(a){this.g3d=a;this.shader=a.shader},"J.g3d.Graphics3D");
c(c$,"render",function(a,b,d,c,g,e,h,l,k,j){if(1!=g&&(49<b&&(b&=-2),!this.g3d.isClippedXY(b,d,c))){this.slab=this.g3d.slab;this.depth=this.g3d.depth;var m=b+1>>1;if(!((this.maxZ=g+m)<this.slab||(this.minZ=g-m)>this.depth)){this.minX=d-m;this.maxX=d+m;this.minY=c-m;this.maxY=c+m;this.shader.nOut=this.shader.nIn=0;this.zbuf=this.g3d.zbuf;this.height=this.g3d.height;this.width=this.g3d.width;this.offsetPbufBeginLine=this.width*c+d;this.x=d;this.y=c;this.z=g;this.diameter=b;this.shades=a;a=this.shader;
this.mat=e;if(null!=e&&(this.coef=h,this.mDeriv=l,this.selectedOctant=k,null==a.ellipsoidShades&&a.createEllipsoidShades(),null!=j)){this.planeShade=-1;for(h=0;3>h;h++)if(m=this.dxyz[h][0]=j[h].x-d,l=this.dxyz[h][1]=j[h].y-c,k=this.dxyz[h][2]=j[h].z-g,this.planeShades[h]=a.getShadeIndex(m,l,-k),0==m&&0==l){this.planeShade=this.planeShades[h];break}}if(null!=e||128<b)this.renderQuadrant(-1,-1),this.renderQuadrant(-1,1),this.renderQuadrant(1,-1),this.renderQuadrant(1,1),null!=e&&(this.mDeriv=this.coef=
this.mat=null);else{var r=a.sphereShapeCache[b-1];if(null==r){r=0;e=0!=(b&1);j=b/2;l=j*j;m=x((b+1)/2);k=e?0:0.5;for(h=0;h<m;++h,++k)for(var y=k*k,w=e?0:0.5,F=0;F<m;++F,++w){var G=w*w,G=l-y-G;0<=G&&++r}var r=E(r,0),p=0;k=e?0:0.5;for(h=0;h<m;++h,++k){y=k*k;w=e?0:0.5;for(F=0;F<m;++F,++w)if(G=w*w,G=l-y-G,0<=G){var q=Math.sqrt(G),G=z(q),t=a.getShadeN(w,k,q,j),s=a.getShadeN(-w,k,q,j),u=a.getShadeN(w,-k,q,j),q=a.getShadeN(-w,-k,q,j),G=G|t<<7|s<<13|u<<19|q<<25;r[p++]=G}r[p-1]|=2147483648}a.sphereShapeCache[b-
1]=r}0>this.minX||this.maxX>=this.width||0>this.minY||this.maxY>=this.height||this.minZ<this.slab||g>this.depth?this.renderSphereClipped(r,d,c,g,b):this.renderSphereUnclipped(r,g,b)}this.zbuf=this.shades=null}}},"~A,~N,~N,~N,~N,JU.M3,~A,JU.M4,~N,~A");c(c$,"renderSphereUnclipped",function(a,b,d){var c=0,g=1-(d&1),e=this.offsetPbufBeginLine,h=e-g*this.width;d=x((d+1)/2);var l=this.shades,k=this.zbuf,j=this.width,m=this.g3d.pixel;do{var r=e,y=e-g,w=h,F=h-g,G;do{G=a[c++];var q=b-(G&127);q<k[r]&&m.addPixel(r,
q,l[G>>7&63]);q<k[y]&&m.addPixel(y,q,l[G>>13&63]);q<k[w]&&m.addPixel(w,q,l[G>>19&63]);q<k[F]&&m.addPixel(F,q,l[G>>25&63]);++r;--y;++w;--F}while(0<=G);e+=j;h-=j}while(0<--d)},"~A,~N,~N");c(c$,"renderSphereClipped",function(a,b,d,c,g){var e=this.width,h=this.height,l=0,k=1-(g&1),j=this.offsetPbufBeginLine,m=j-k*e;g=x((g+1)/2);var r=d,y=d-k;d=(b<<16)+(d<<1)^858993459;var w=this.shades,F=this.zbuf,q=this.g3d.pixel,p=this.slab,t=this.depth;do{var s=0<=r&&r<h,u=0<=y&&y<h,v=j,A=j-k,z=m,C=m-k,B,D=b,E=b-k;
do{var K=0<=E&&E<e,L=0<=D&&D<e;B=a[l++];var I;I=B&127;var H;c<p?(H=c+I,I=H>=p):(H=c-I,I=H<p);I&&(H=p);if(H>=p&&H<=t){if(s){if(L&&H<F[v]){var M=I?44+(d>>7&7):B>>7&63;q.addPixel(v,H,w[M])}K&&H<F[A]&&(M=I?44+(d>>13&7):B>>13&63,q.addPixel(A,H,w[M]))}u&&(L&&H<F[z]&&(M=I?44+(d>>19&7):B>>19&63,q.addPixel(z,H,w[M])),K&&H<F[C]&&(M=I?44+(d>>25&7):B>>25&63,q.addPixel(C,H,w[M])))}++v;--A;++z;--C;++D;--E;I&&(d=(d<<16)+(d<<1)+d&2147483647)}while(0<=B);j+=e;m-=e;++r;--y}while(0<--g)},"~A,~N,~N,~N,~N");c(c$,"renderQuadrant",
function(a,b){var d=x(this.diameter/2),c=this.x+d*a,g=(0>this.x?-1:this.x<this.width?0:1)+(0>c?-2:c<this.width?0:2);-3==g||3==g||(c=this.y+d*b,c=(0>this.y?-1:this.y<this.height?0:1)+(0>c?-2:c<this.height?0:2),-3==c||3==c||(null==this.mat&&0==g&&0==c&&this.z-d>=this.slab&&this.z<=this.depth?this.renderQuadrantUnclipped(d,a,b):this.renderQuadrantClipped(d,a,b)))},"~N,~N");c(c$,"renderQuadrantUnclipped",function(a,b,d){for(var c=a*a,g=2*a+1,e=0>d?-this.width:this.width,h=this.offsetPbufBeginLine,l=this.zbuf,
k=this.g3d.pixel,j=this.shader.sphereShadeIndexes,m=this.shades,r=0,y=0;y<=c;y+=r+ ++r,h+=e)for(var w=h,F=c-y,q=this.z-a,p=x((r*d+a<<8)/g),t=0,s=0;s<=F;s+=t+ ++t,w+=b)if(!(l[w]<=q)&&(q=x(Math.sqrt(F-s)),q=this.z-q,!(l[w]<=q))){var u=x((t*b+a<<8)/g);k.addPixel(w,q,m[j[(p<<8)+u]])}},"~N,~N,~N");c(c$,"renderQuadrantClipped",function(a,b,d){for(var c=null!=this.mat,g=0<=this.selectedOctant,e=a*a,h=2*a+1,l=0>d?-this.width:this.width,k=this.offsetPbufBeginLine,j=(this.x<<16)+(this.y<<1)^858993459,m=this.y,
r=0,y=0,w=this.g3d.pixel,q=0,p=this.height,t=this.width,s=this.x,u=this.zbuf,v=this.dxyz,A=this.y,z=this.z,B=this.slab,C=this.depth,D=this.ptTemp,E=this.coef,H=this.zroot,I=this.selectedOctant,K=this.shader,L=this.shades,M=this.planeShades,N=K.sphereShadeIndexes,P=this.planeShade,Q=this.mat,T=0,S=0;S<=e;S+=T+ ++T,k+=l,m+=d)if(0>m){if(0>d)break}else if(m>=p){if(0<d)break}else{var V=e-(c?0:S),Y=s;c||(r=x((T*d+a<<8)/h));for(var j=(j<<16)+(j<<1)+j&2147483647,W=-1,R=1,X=k,$=0,Z=0;Z<=V;Z+=$+ ++$,X+=b,Y+=
b)if(0>Y){if(0>b)break}else if(Y>=t){if(0<b)break}else{var O;if(c){O=(E[4]*Y+E[5]*m+E[8])/E[2]/2;var U=O*O-(E[0]*Y*Y+E[1]*m*m+E[3]*Y*m+E[6]*Y+E[7]*m-1)/E[2];if(0>U){if(0<=W)break;continue}U=Math.sqrt(U);H[0]=-O-U;H[1]=-O+U;W=z<B?1:0;if(0==(O=x(H[W])))O=z;R=2;q=O;if(g){D.set(Y-s,m-A,O-z);Q.rotate(D);U=0;0>D.x&&(U|=1);0>D.y&&(U|=2);0>D.z&&(U|=4);if(U==I){if(0<=P)y=P;else{R=3;y=3.4028235E38;for(O=0;3>O;O++)if(0!=(U=v[O][2]))U=z+(-v[O][0]*(Y-this.x)-v[O][1]*(m-A))/U,U<y&&(y=U,R=O);3==R&&(R=0,y=z);H[0]=
y;y=M[R]}O=x(H[0]);R=3}if(U=z<B?O>=B:O<B)q=O=B,R=0}if(O<B||O>C||u[X]<=q)continue}else{O=x(Math.sqrt(V-Z));O=z+(z<B?O:-O);if(U=z<B?O>=B:O<B)O=B,R=0;if(O<B||O>C||u[X]<=O)continue}switch(R){case 0:y=44+(j>>8&7);j=(j<<16)+(j<<1)+j&2147483647;R=1;break;case 2:y=K.getEllipsoidShade(Y,m,H[W],a,this.mDeriv);break;case 3:w.clearPixel(X,q);break;default:y=x(($*b+a<<8)/h),y=N[(r<<8)+y]}w.addPixel(X,O,L[y])}j=(j+Y+m|1)&2147483647}},"~N,~N,~N");C(c$,"maxOddSizeSphere",49,"maxSphereDiameter",1E3,"maxSphereDiameter2",
2E3,"SHADE_SLAB_CLIPPED",47)}),u("J.g3d"),v(["java.util.Hashtable"],"J.g3d.TextRenderer",["JU.CU"],function(){c$=s(function(){this.size=this.mapWidth=this.width=this.ascent=this.height=0;this.tmap=null;this.isInvalid=!1;p(this,arguments)},J.g3d,"TextRenderer");c$.clearFontCache=c(c$,"clearFontCache",function(){J.g3d.TextRenderer.working||(J.g3d.TextRenderer.htFont3d.clear(),J.g3d.TextRenderer.htFont3dAntialias.clear())});c$.plot=c(c$,"plot",function(a,b,d,c,g,e,h,l,k,j){if(0==e.length)return 0;if(0<=
e.indexOf("<su")||0<=e.indexOf("<color"))return J.g3d.TextRenderer.plotByCharacter(a,b,d,c,g,e,h,l,k,j);var m=h.getAscent();b-=m;e=J.g3d.TextRenderer.getPlotText3D(a,b,l,e,h,j);if(e.isInvalid)return e.width;j&&0==(c&12632256)&&(c|=263172);j=e.height;h=e.width;var m=e.tmap,r=l.width,y=l.height,w=l.zbuf,q=l.pixel,p=l.translucencyLog;if(null!=k||(0>a||a+e.width>r||0>b||b+e.height>y)&&null!=(k=l))for(var t=0,s=0;s<j;s++)for(var u=0;u<h;u++){var v=m[t++];0!=v&&k.plotImagePixel(c,a+u,b+s,d,v,g,r,y,w,q,
p)}else{a=b*r+a;for(t=s=0;s<j;s++){for(u=0;u<h;u++)v=m[t++],0!=v&&d<w[a]&&(8==v?q.addPixel(a,d,c):(v+=p,7>=v&&l.shadeTextPixel(a,d,c,g,v,w))),a++;a+=r-h}}return e.width},"~N,~N,~N,~N,~N,~S,javajs.awt.Font,J.g3d.Graphics3D,J.api.JmolRendererInterface,~B");c$.plotByCharacter=c(c$,"plotByCharacter",function(a,b,d,c,g,e,h,l,k,j){for(var m=0,r=e.length,y=Math.round(0.25*h.getHeight()),w=-Math.round(0.3*h.getHeight()),q=0,p=0;p<r;p++){if("<"==e.charAt(p)){if(p+5<r&&e.substring(p,p+6).equals("<color")){var q=
c,s=e.indexOf(">",p);if(0>s)continue;c=JU.CU.getArgbFromString(e.substring(p+7,s).trim());p=s;continue}if(p+7<r&&e.substring(p,p+8).equals("</color>")){p+=7;c=q;continue}if(p+4<r&&e.substring(p,p+5).equals("<sub>")){p+=4;b+=y;continue}if(p+4<r&&e.substring(p,p+5).equals("<sup>")){p+=4;b+=w;continue}if(p+5<r&&e.substring(p,p+6).equals("</sub>")){p+=5;b-=y;continue}if(p+5<r&&e.substring(p,p+6).equals("</sup>")){p+=5;b-=w;continue}}s=J.g3d.TextRenderer.plot(a+m,b,d,c,g,e.substring(p,p+1),h,l,k,j);m+=
s}return m},"~N,~N,~N,~N,~N,~S,javajs.awt.Font,J.g3d.Graphics3D,J.api.JmolRendererInterface,~B");t(c$,function(a,b){this.ascent=b.getAscent();this.height=b.getHeight();this.width=b.stringWidth(a);0!=this.width&&(this.mapWidth=this.width,this.size=this.mapWidth*this.height)},"~S,javajs.awt.Font");c$.getPlotText3D=c(c$,"getPlotText3D",function(a,b,d,c,g,e){J.g3d.TextRenderer.working=!0;e=e?J.g3d.TextRenderer.htFont3dAntialias:J.g3d.TextRenderer.htFont3d;var h=e.get(g),l=null,k=!1,j=!1;null!=h?l=h.get(c):
(h=new java.util.Hashtable,k=!0);null==l&&(l=new J.g3d.TextRenderer(c,g),j=!0);l.isInvalid=0==l.width||0>=a+l.width||a>=d.width||0>=b+l.height||b>=d.height;if(l.isInvalid)return l;k&&e.put(g,h);j&&(l.setTranslucency(c,g,d),h.put(c,l));J.g3d.TextRenderer.working=!1;return l},"~N,~N,J.g3d.Graphics3D,~S,javajs.awt.Font,~B");c(c$,"setTranslucency",function(a,b,d){a=d.apiPlatform.getTextPixels(a,b,d.platform.getGraphicsForTextOrImage(this.mapWidth,this.height),d.platform.offscreenImage,this.mapWidth,this.height,
this.ascent);if(null!=a){this.tmap=Q(this.size,0);for(b=a.length;0<=--b;)d=a[b]&255,0!=d&&(this.tmap[b]=J.g3d.TextRenderer.translucency[d>>5])}},"~S,javajs.awt.Font,J.g3d.Graphics3D");C(c$,"translucency",[7,6,5,4,3,2,1,8],"working",!1);c$.htFont3d=c$.prototype.htFont3d=new java.util.Hashtable;c$.htFont3dAntialias=c$.prototype.htFont3dAntialias=new java.util.Hashtable}),u("J.g3d"),c$=A(J.g3d,"TextSorter",null,java.util.Comparator),j(c$,"compare",function(a,b){return null==a||null==b?0:a.z>b.z?-1:a.z<
b.z?1:0},"J.g3d.TextString,J.g3d.TextString"),u("J.g3d"),v(["JU.P3i"],"J.g3d.TextString",null,function(){c$=s(function(){this.font=this.text=null;this.bgargb=this.argb=0;p(this,arguments)},J.g3d,"TextString",JU.P3i);c(c$,"setText",function(a,b,d,c,g,e,h){this.text=a;this.font=b;this.argb=d;this.bgargb=c;this.x=g;this.y=e;this.z=h},"~S,javajs.awt.Font,~N,~N,~N,~N,~N");c(c$,"toString",function(){return V(this,J.g3d.TextString,"toString",[])+" "+this.text})}),u("J.g3d"),v(["J.g3d.G3DRenderer","JU.Rgb16"],
"J.g3d.TriangleRenderer",["JU.GData"],function(){c$=s(function(){this.rgb16t2=this.rgb16t1=this.rgb16sGouraud=this.rgb16sE=this.rgb16sW=this.azE=this.axE=this.azW=this.axW=this.az=this.ay=this.ax=this.g3d=null;p(this,arguments)},J.g3d,"TriangleRenderer",null,J.g3d.G3DRenderer);N(c$,function(){this.ax=E(3,0);this.ay=E(3,0);this.az=E(3,0);this.axW=E(64,0);this.azW=E(64,0);this.axE=E(64,0);this.azE=E(64,0);this.rgb16t1=new JU.Rgb16;this.rgb16t2=new JU.Rgb16});t(c$,function(){});j(c$,"set",function(a){try{this.rgb16sW=
Array(64);this.rgb16sE=Array(64);for(var b=64;0<=--b;)this.rgb16sW[b]=new JU.Rgb16,this.rgb16sE[b]=new JU.Rgb16;this.g3d=a;this.rgb16sGouraud=Array(3);for(b=3;0<=--b;)this.rgb16sGouraud[b]=new JU.Rgb16}catch(d){if(!B(d,Exception))throw d;}return this},"J.api.JmolRendererInterface,JU.GData");c(c$,"reallocRgb16s",function(a,b){var d=Array(b);System.arraycopy(a,0,d,0,a.length);for(var c=a.length;c<b;++c)d[c]=new JU.Rgb16;return d},"~A,~N");c(c$,"setGouraud",function(a,b,d){this.rgb16sGouraud[0].setInt(a);
this.rgb16sGouraud[1].setInt(b);this.rgb16sGouraud[2].setInt(d)},"~N,~N,~N");c(c$,"fillTriangleXYZ",function(a,b,d,c,g,e,h,l,k,j){this.ax[0]=a;this.ax[1]=c;this.ax[2]=h;this.ay[0]=b;this.ay[1]=g;this.ay[2]=l;this.az[0]=d;this.az[1]=e;this.az[2]=k;this.fillTriangleB(j)},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~B");c(c$,"fillTriangleP3i",function(a,b,d,c){this.ax[0]=a.x;this.ax[1]=b.x;this.ax[2]=d.x;this.ay[0]=a.y;this.ay[1]=b.y;this.ay[2]=d.y;this.az[0]=a.z;this.az[1]=b.z;this.az[2]=d.z;this.fillTriangleB(c)},
"JU.P3i,JU.P3i,JU.P3i,~B");c(c$,"fillTriangleP3f",function(a,b,d,c){this.ax[0]=Math.round(a.x);this.ax[1]=Math.round(b.x);this.ax[2]=Math.round(d.x);this.ay[0]=Math.round(a.y);this.ay[1]=Math.round(b.y);this.ay[2]=Math.round(d.y);this.az[0]=Math.round(a.z);this.az[1]=Math.round(b.z);this.az[2]=Math.round(d.z);this.fillTriangleB(c)},"JU.P3,JU.P3,JU.P3,~B");c(c$,"fillTriangleB",function(a){if(!(1>=this.az[0]||1>=this.az[1]||1>=this.az[2])){var b=this.g3d.clipCode3(this.ax[0],this.ay[0],this.az[0]),
d=this.g3d.clipCode3(this.ax[1],this.ay[1],this.az[1]),c=this.g3d.clipCode3(this.ax[2],this.ay[2],this.az[2]),g=0!=(b|d|c);if(!(g&&0!=(b&d&c))){c=0;this.ay[1]<this.ay[c]&&(c=1);this.ay[2]<this.ay[c]&&(c=2);var e=(c+1)%3,h=(c+2)%3;if(this.ay[e]>this.ay[h])var l=e,e=h,h=l;var b=this.ay[c],k=this.ay[e],j=this.ay[h],d=j-b+1;if(!(d>3*this.g3d.height)){if(d>this.axW.length){var m=d+31&-32;this.axW=E(m,0);this.azW=E(m,0);this.axE=E(m,0);this.azE=E(m,0);this.rgb16sW=this.reallocRgb16s(this.rgb16sW,m);this.rgb16sE=
this.reallocRgb16s(this.rgb16sE,m)}var r;a?(m=this.rgb16sW,r=this.rgb16sE):m=r=null;l=k-b;0==l?(this.ax[e]<this.ax[c]&&(l=e,e=c,c=l),this.generateRaster(d,c,h,this.axW,this.azW,0,m),this.generateRaster(d,e,h,this.axE,this.azE,0,r)):k==j?(this.ax[h]<this.ax[e]&&(l=e,e=h,h=l),this.generateRaster(d,c,e,this.axW,this.azW,0,m),this.generateRaster(d,c,h,this.axE,this.azE,0,r)):(k=this.ax[h]-this.ax[c],j=JU.GData.roundInt(x(d/2)),0>k&&(j=-j),this.ax[c]+x((k*l+j)/d)<this.ax[e]?(this.generateRaster(d,c,h,
this.axW,this.azW,0,m),this.generateRaster(l+1,c,e,this.axE,this.azE,0,r),this.generateRaster(d-l,e,h,this.axE,this.azE,l,r)):(this.generateRaster(l+1,c,e,this.axW,this.azW,0,m),this.generateRaster(d-l,e,h,this.axW,this.azW,l,m),this.generateRaster(d,c,h,this.axE,this.azE,0,r)));this.g3d.setZMargin(5);c=this.g3d.pass2Flag01;e=1-c;h=0;0>b&&(d+=b,h-=b,b=0);b+d>this.g3d.height&&(d=this.g3d.height-b);if(a)if(g)for(;--d>=c;++b,++h)g=this.axE[h]-(a=this.axW[h])+e,0<g&&this.g3d.plotPixelsClippedRaster(g,
a,b,this.azW[h],this.azE[h],this.rgb16sW[h],this.rgb16sE[h]);else for(;--d>=c;++b,++h)g=this.axE[h]-(a=this.axW[h])+e,1==c&&0>g&&(g=1,a--),0<g&&this.g3d.plotPixelsUnclippedRaster(g,a,b,this.azW[h],this.azE[h],this.rgb16sW[h],this.rgb16sE[h]);else if(g)for(;--d>=c;++b,++h)g=this.axE[h]-(a=this.axW[h])+e,0<g&&this.g3d.plotPixelsClippedRaster(g,a,b,this.azW[h],this.azE[h],null,null);else for(;--d>=c;++b,++h)g=this.axE[h]-(a=this.axW[h])+e,1==c&&0>g&&(g=1,a--),0<g&&this.g3d.plotPixelsUnclippedRaster(g,
a,b,this.azW[h],this.azE[h],null,null);this.g3d.setZMargin(0)}}}},"~B");c(c$,"generateRaster",function(a,b,d,c,g,e,h){var l=this.ax[b],k=this.az[b],j=this.ax[d]-l,m=this.az[d]-k,r,y,w;0<=j?(r=1,y=j,w=0):(r=-1,y=-j,w=1-a);var k=(k<<10)+512,p=JU.GData.roundInt(x(a/2));0>m&&(p=-p);m=x(((m<<10)+p)/a);y<=a?p=0:(p=JU.GData.roundInt(x(j/a)),y%=a);for(var q=0,j=e;q<a;k+=m,++j,++q)c[j]=l,g[j]=k>>10,l+=p,w+=y,0<w&&(l+=r,w-=a);if(null!=h){c=this.rgb16t1;c.setRgb(this.rgb16sGouraud[b]);b=this.rgb16t2;b.diffDiv(this.rgb16sGouraud[d],
c,a);j=e;for(a=e+a;j<a;++j)h[j].setAndIncrement(c,b)}},"~N,~N,~N,~A,~A,~N,~A");C(c$,"DEFAULT",64)}),u("J.i18n"),v("J.api.Translator java.text.MessageFormat java.util.Hashtable JU.PT J.i18n.Language $.Resource".split(" "),"J.i18n.GT",["JU.Logger"],function(){c$=s(function(){this.resources=null;this.resourceCount=0;this.doTranslate=!0;this.language=null;p(this,arguments)},J.i18n,"GT",null,J.api.Translator);t(c$,function(){});j(c$,"translate",function(a){return J.i18n.GT._(a)},"~S");t(c$,function(a,
b){this.resources=null;this.resourceCount=0;J.i18n.GT.$getTextWrapper=this;null!=b&&0==b.length&&(b="none");null!=b&&(this.language=b);"none".equals(this.language)&&(this.language=null);null==this.language&&(this.language=J.i18n.Resource.getLanguage());null==this.language&&(this.language="en");var d=this.language,c=null,g=null,e=this.language.indexOf("_");if(0<=e&&(d=d.substring(0,e),c=this.language,0<=(e=c.indexOf("_",++e))))c=c.substring(0,e),g=this.language;if(null==(this.language=this.getSupported(g))&&
null==(this.language=this.getSupported(c))&&null==(this.language=this.getSupported(d)))this.language="en",System.out.println(this.language+" not supported -- using en");else{c=g=null;switch(this.language.length){default:g=this.language;c=this.language.substring(0,5);d=this.language.substring(0,2);break;case 5:c=this.language;d=this.language.substring(0,2);break;case 2:d=this.language}c=this.getSupported(c);d=this.getSupported(d);if(d===c||"en_US".equals(d))d=null;c===g&&(c=null);"en_US".equals(c)||
(J.i18n.GT.allowDebug&&JU.Logger.debugging&&JU.Logger.debug("Instantiating gettext wrapper for "+this.language+" using files for language:"+d+" country:"+c+" variant:"+g),J.i18n.GT.$ignoreApplicationBundle||this.addBundles(a,"Jmol",g,c,d),this.addBundles(a,"JmolApplet",g,c,d))}},"JV.Viewer,~S");c$.getLanguageList=c(c$,"getLanguageList",function(a){null==J.i18n.GT.languageList&&(null==a&&(a=J.i18n.GT.getTextWrapper()),a.createLanguageList());return J.i18n.GT.languageList},"J.i18n.GT");c$.getLanguage=
c(c$,"getLanguage",function(){return J.i18n.GT.getTextWrapper().language});c$.ignoreApplicationBundle=c(c$,"ignoreApplicationBundle",function(){J.i18n.GT.$ignoreApplicationBundle=!0});c$.setDoTranslate=c(c$,"setDoTranslate",function(a){var b=J.i18n.GT.getDoTranslate();J.i18n.GT.getTextWrapper().doTranslate=a;return b},"~B");c$.getDoTranslate=c(c$,"getDoTranslate",function(){return J.i18n.GT.getTextWrapper().doTranslate});c$._=c(c$,"_",function(a){return J.i18n.GT.getTextWrapper().getString(a)},"~S");
c$.o=c(c$,"o",function(a,b){if(q(b,Array)){if(1!=b.length)return java.text.MessageFormat.format(a,b);b=b[0]}return JU.PT.rep(a,"{0}",b.toString())},"~S,~O");c$.i=c(c$,"i",function(a,b){return JU.PT.rep(a,"{0}",""+b)},"~S,~N");c$.escapeHTML=c(c$,"escapeHTML",function(a){for(var b,d=a.length;0<=--d;)if(127<(b=a.charAt(d)).charCodeAt(0))a=a.substring(0,d)+"&#"+b.charCodeAt(0)+";"+a.substring(d+1);return a},"~S");c$.getTextWrapper=c(c$,"getTextWrapper",function(){return null==J.i18n.GT.$getTextWrapper?
J.i18n.GT.$getTextWrapper=new J.i18n.GT(null,null):J.i18n.GT.$getTextWrapper});c(c$,"createLanguageList",function(){var a=this.doTranslate;this.doTranslate=!1;J.i18n.GT.languageList=J.i18n.Language.getLanguageList();this.doTranslate=a});c(c$,"getSupported",function(a){if(null==a)return null;var b=J.i18n.GT.htLanguages.get(a);if(null!=b)return 0==b.length?null:b;b=J.i18n.Language.getSupported(J.i18n.GT.getLanguageList(this),a);J.i18n.GT.htLanguages.put(a,null==b?"":b);return b},"~S");c(c$,"addBundles",
function(a,b,d,c,g){try{b="J.translation."+b+".",null!=d&&this.addBundle(a,b,d),null!=c&&this.addBundle(a,b,c),null!=g&&this.addBundle(a,b,g)}catch(e){if(B(e,Exception))J.i18n.GT.allowDebug&&JU.Logger.errorEx("Some exception occurred!",e),this.resources=null,this.resourceCount=0;else throw e;}},"JV.Viewer,~S,~S,~S,~S");c(c$,"addBundle",function(a,b,d){a=J.i18n.Resource.getResource(a,b,d);null!=a&&(null==this.resources&&(this.resources=Array(8),this.resourceCount=0),this.resources[this.resourceCount]=
a,this.resourceCount++,J.i18n.GT.allowDebug&&JU.Logger.debug("GT adding "+b))},"JV.Viewer,~S,~S");c(c$,"getString",function(a){var b=null;if(this.doTranslate){for(var d=this.resourceCount;0<=--d;)if(b=this.resources[d].getString(a),null!=b){a=b;break}0<this.resourceCount&&(null==b&&J.i18n.GT.allowDebug&&JU.Logger.debugging)&&JU.Logger.debug("No trans, using default: "+a)}null==b&&(a.startsWith("[")?a=a.substring(a.indexOf("]")+1):a.endsWith("]")&&(a=a.substring(0,a.indexOf("["))));return a},"~S");
C(c$,"$ignoreApplicationBundle",!1,"$getTextWrapper",null,"languageList",null,"allowDebug",!1,"vwr",null);c$.htLanguages=c$.prototype.htLanguages=new java.util.Hashtable}),u("J.i18n"),v(null,"J.i18n.Language",["J.i18n.GT"],function(){c$=s(function(){this.nativeLanguage=this.language=this.code=null;this.display=!1;p(this,arguments)},J.i18n,"Language");c$.getLanguageList=c(c$,"getLanguageList",function(){return[new J.i18n.Language("ar",J.i18n.GT._("Arabic"),"\u0627\u0644\u0639\u0631\u0628\u064a\u0629",
!1),new J.i18n.Language("ast",J.i18n.GT._("Asturian"),"Asturian",!1),new J.i18n.Language("az",J.i18n.GT._("Azerbaijani"),"az\u0259rbaycan dili",!1),new J.i18n.Language("bs",J.i18n.GT._("Bosnian"),"bosanski jezik",!1),new J.i18n.Language("ca",J.i18n.GT._("Catalan"),"Catal\u00e0",!0),new J.i18n.Language("cs",J.i18n.GT._("Czech"),"\u010ce\u0161tina",!0),new J.i18n.Language("da",J.i18n.GT._("Danish"),"Dansk",!0),new J.i18n.Language("de",J.i18n.GT._("German"),"Deutsch",!0),new J.i18n.Language("el",J.i18n.GT._("Greek"),
"\u0395\u03bb\u03bb\u03b7\u03bd\u03b9\u03ba\u03ac",!1),new J.i18n.Language("en_AU",J.i18n.GT._("Australian English"),"Australian English",!1),new J.i18n.Language("en_GB",J.i18n.GT._("British English"),"British English",!0),new J.i18n.Language("en_US",J.i18n.GT._("American English"),"American English",!0),new J.i18n.Language("es",J.i18n.GT._("Spanish"),"Espa\u00f1ol",!0),new J.i18n.Language("et",J.i18n.GT._("Estonian"),"Eesti",!1),new J.i18n.Language("eu",J.i18n.GT._("Basque"),"Euskara",!0),new J.i18n.Language("fi",
J.i18n.GT._("Finnish"),"Suomi",!0),new J.i18n.Language("fo",J.i18n.GT._("Faroese"),"F\u00f8royskt",!1),new J.i18n.Language("fr",J.i18n.GT._("French"),"Fran\u00e7ais",!0),new J.i18n.Language("fy",J.i18n.GT._("Frisian"),"Frysk",!1),new J.i18n.Language("gl",J.i18n.GT._("Galician"),"Galego",!1),new J.i18n.Language("hr",J.i18n.GT._("Croatian"),"Hrvatski",!1),new J.i18n.Language("hu",J.i18n.GT._("Hungarian"),"Magyar",!0),new J.i18n.Language("hy",J.i18n.GT._("Armenian"),"\u0540\u0561\u0575\u0565\u0580\u0565\u0576",
!1),new J.i18n.Language("id",J.i18n.GT._("Indonesian"),"Indonesia",!0),new J.i18n.Language("it",J.i18n.GT._("Italian"),"Italiano",!0),new J.i18n.Language("ja",J.i18n.GT._("Japanese"),"\u65e5\u672c\u8a9e",!0),new J.i18n.Language("jv",J.i18n.GT._("Javanese"),"Basa Jawa",!1),new J.i18n.Language("ko",J.i18n.GT._("Korean"),"\ud55c\uad6d\uc5b4",!0),new J.i18n.Language("ms",J.i18n.GT._("Malay"),"Bahasa Melayu",!0),new J.i18n.Language("nb",J.i18n.GT._("Norwegian Bokmal"),"Norsk Bokm\u00e5l",!1),new J.i18n.Language("nl",
J.i18n.GT._("Dutch"),"Nederlands",!0),new J.i18n.Language("oc",J.i18n.GT._("Occitan"),"Occitan",!1),new J.i18n.Language("pl",J.i18n.GT._("Polish"),"Polski",!1),new J.i18n.Language("pt",J.i18n.GT._("Portuguese"),"Portugu\u00eas",!1),new J.i18n.Language("pt_BR",J.i18n.GT._("Brazilian Portuguese"),"Portugu\u00eas brasileiro",!0),new J.i18n.Language("ru",J.i18n.GT._("Russian"),"\u0420\u0443\u0441\u0441\u043a\u0438\u0439",!1),new J.i18n.Language("sl",J.i18n.GT._("Slovenian"),"Sloven\u0161\u010dina",!1),
new J.i18n.Language("sr",J.i18n.GT._("Serbian"),"\u0441\u0440\u043f\u0441\u043a\u0438 \u0458\u0435\u0437\u0438\u043a",!1),new J.i18n.Language("sv",J.i18n.GT._("Swedish"),"Svenska",!0),new J.i18n.Language("ta",J.i18n.GT._("Tamil"),"\u0ba4\u0bae\u0bbf\u0bb4\u0bcd",!1),new J.i18n.Language("te",J.i18n.GT._("Telugu"),"\u0c24\u0c46\u0c32\u0c41\u0c17\u0c41",!1),new J.i18n.Language("tr",J.i18n.GT._("Turkish"),"T\u00fcrk\u00e7e",!0),new J.i18n.Language("ug",J.i18n.GT._("Uyghur"),"Uy\u01a3urq\u0259",!1),new J.i18n.Language("uk",
J.i18n.GT._("Ukrainian"),"\u0423\u043a\u0440\u0430\u0457\u043d\u0441\u044c\u043a\u0430",!0),new J.i18n.Language("uz",J.i18n.GT._("Uzbek"),"O'zbek",!1),new J.i18n.Language("zh_CN",J.i18n.GT._("Simplified Chinese"),"\u7b80\u4f53\u4e2d\u6587",!0),new J.i18n.Language("zh_TW",J.i18n.GT._("Traditional Chinese"),"\u7e41\u9ad4\u4e2d\u6587",!0)]});t(c$,function(a,b,d,c){this.code=a;this.language=b;this.nativeLanguage=d;this.display=c},"~S,~S,~S,~B");c$.getSupported=c(c$,"getSupported",function(a,b){for(var d=
a.length;0<=--d;)if(a[d].code.equalsIgnoreCase(b))return a[d].code;for(d=a.length;0<=--d;)if(a[d].code.startsWith(b))return a[d].code;return null},"~A,~S")}),u("J.i18n"),v(null,"J.i18n.Resource",["java.util.Hashtable","JU.PT","J.api.Interface","JU.Logger","JV.Viewer"],function(){c$=s(function(){this.resourceMap=this.resource=null;p(this,arguments)},J.i18n,"Resource");t(c$,function(a,b){null==b?this.resourceMap=a:this.resource=a},"~O,~S");c$.getResource=c(c$,"getResource",function(a,b,d){var c=null;
if(null!=a&&a.isApplet)return b=JV.Viewer.appletIdiomaBase+"/"+d+".po",JU.Logger.info("Loading language resource "+b),c=a.getFileAsString3(b,!1,"gt"),J.i18n.Resource.getResourceFromPO(c);b+=d+".Messages_"+d;a=J.api.Interface.getInterface(b,a,"gt");return null==a?null:new J.i18n.Resource(a,b)},"JV.Viewer,~S,~S");c(c$,"getString",function(a){try{return null==this.resource?this.resourceMap.get(a):this.resource.getString(a)}catch(b){if(B(b,Exception))return null;throw b;}},"~S");c$.getLanguage=c(c$,"getLanguage",
function(){var a=null;return a=Jmol.featureDetection.getDefaultLanguage().replace(/-/g,"_")});c$.getResourceFromPO=c(c$,"getResourceFromPO",function(a){if(null==a||0==a.length)return null;var b=new java.util.Hashtable;try{var d=JU.PT.split(a,"\n");a=0;for(var c="",g="",e=0;e<d.length;e++){var h=d[e];2>=h.length?(2==a&&(0!=c.length&&0!=g.length)&&b.put(g,c),a=0):0==h.indexOf("msgid")?(a=1,g=J.i18n.Resource.fix(h)):0==h.indexOf("msgstr")?(a=2,c=J.i18n.Resource.fix(h)):1==a?g+=J.i18n.Resource.fix(h):
2==a&&(c+=J.i18n.Resource.fix(h))}}catch(l){if(!B(l,Exception))throw l;}JU.Logger.info(b.size()+" translations loaded");return 0==b.size()?null:new J.i18n.Resource(b,null)},"~S");c$.fix=c(c$,"fix",function(a){0<=a.indexOf('\\"')&&(a=JU.PT.rep(a,'\\"','"'));return JU.PT.rep(a.substring(a.indexOf('"')+1,a.lastIndexOf('"')),"\\n","\n")},"~S")}),u("J.io"),v(null,"J.io.FileReader","java.io.BufferedInputStream $.BufferedReader $.Reader javajs.api.GenericBinaryDocument $.ZInputStream JU.PT J.api.Interface JU.Logger".split(" "),
function(){c$=s(function(){this.htParams=this.reader=this.atomSetCollection=this.fileTypeIn=this.nameAsGivenIn=this.fullPathNameIn=this.fileNameIn=this.vwr=this.fm=null;this.isAppend=!1;this.bytes=null;p(this,arguments)},J.io,"FileReader");t(c$,function(a,b,d,c,g,e,h,l,k){this.fm=a;this.vwr=b;this.fileNameIn=d;this.fullPathNameIn=c;this.nameAsGivenIn=g;this.fileTypeIn=e;this.reader=q(h,java.io.BufferedReader)?h:q(h,java.io.Reader)?new java.io.BufferedReader(h):null;this.bytes=JU.PT.isAB(h)?h:null;
this.htParams=l;this.isAppend=k},"JV.FileManager,JV.Viewer,~S,~S,~S,~S,~O,java.util.Map,~B");c(c$,"run",function(){!this.isAppend&&this.vwr.displayLoadErrors&&this.vwr.zap(!1,!0,!1);var a=null,a=null;if(null==this.reader){a=this.fm.getUnzippedReaderOrStreamFromName(this.fullPathNameIn,this.bytes,!0,!1,!1,!0,this.htParams);if(null==a||q(a,String)){a=null==a?"error opening:"+this.nameAsGivenIn:a;a.startsWith("NOTE:")||JU.Logger.error("file ERROR: "+this.fullPathNameIn+"\n"+a);this.atomSetCollection=
a;return}if(q(a,java.io.BufferedReader))this.reader=a;else if(q(a,javajs.api.ZInputStream)){var b=this.fullPathNameIn,d=null,b=b.$replace("\\","/");0<=b.indexOf("|")&&!b.endsWith(".zip")&&(d=JU.PT.split(b,"|"),b=d[0]);null!=d&&this.htParams.put("subFileList",d);d=a;a=this.fm.getZipDirectory(b,!0,!0);this.atomSetCollection=a=this.fm.jmb.getAtomSetCollectionOrBufferedReaderFromZip(this.vwr.getModelAdapter(),d,b,a,this.htParams,!1);try{d.close()}catch(c){if(!B(c,Exception))throw c;}}}q(a,java.io.BufferedInputStream)&&
(b=J.api.Interface.getInterface("JU.BinaryDocument",this.vwr,"file"),b.setStream(this.vwr.getJzt(),a,!0),this.reader=b);if(null!=this.reader){this.atomSetCollection=this.vwr.getModelAdapter().getAtomSetCollectionReader(this.fullPathNameIn,this.fileTypeIn,this.reader,this.htParams);q(this.atomSetCollection,String)||(this.atomSetCollection=this.vwr.getModelAdapter().getAtomSetCollection(this.atomSetCollection));try{q(this.reader,java.io.BufferedReader)?this.reader.close():q(this.reader,javajs.api.GenericBinaryDocument)&&
this.reader.close()}catch(g){if(!B(g,java.io.IOException))throw g;}}q(this.atomSetCollection,String)||(!this.isAppend&&!this.vwr.displayLoadErrors&&this.vwr.zap(!1,!0,!1),this.fm.setFileInfo([this.fullPathNameIn,this.fileNameIn,this.nameAsGivenIn]))});c(c$,"getAtomSetCollection",function(){return this.atomSetCollection})}),u("J.io"),v(null,"J.io.JmolBinary","java.io.BufferedInputStream java.util.Hashtable JU.PT $.Rdr J.api.Interface JU.Logger JV.FileManager $.JmolAsyncException".split(" "),function(){c$=
s(function(){this.jzu=this.spardirCache=this.pngjCache=this.fm=null;p(this,arguments)},J.io,"JmolBinary");t(c$,function(a){this.fm=a},"JV.FileManager");c(c$,"determineSurfaceTypeIs",function(a){var b;try{b=JU.Rdr.getBufferedReader(new java.io.BufferedInputStream(a),"ISO-8859-1")}catch(d){if(B(d,java.io.IOException))return null;throw d;}return this.determineSurfaceFileType(b)},"java.io.InputStream");c$.getEmbeddedScript=c(c$,"getEmbeddedScript",function(a){if(null==a)return a;var b=a.indexOf("**** Jmol Embedded Script ****");
if(0>b)return a;var d=a.lastIndexOf("/*",b),c=a.indexOf(("*"==a.charAt(d+2)?"*":"")+"*/",b);for(0<=d&&c>=b&&(a=a.substring(b+30,c)+"\n");0<=(d=a.indexOf(" #Jmol...\x00"));)a=a.substring(0,d)+a.substring(d+10+4);JU.Logger.debugging&&JU.Logger.debug(a);return a},"~S");c(c$,"getJzu",function(){return null==this.jzu?this.jzu=J.api.Interface.getOption("io.JmolUtil",this.fm.vwr,"file"):this.jzu});c(c$,"getCachedPngjBytes",function(a){return 0>a.indexOf(".png")?null:this.getJzu().getCachedPngjBytes(this,
a)},"~S");c(c$,"clearAndCachePngjFile",function(a){this.pngjCache=new java.util.Hashtable;return null==a||null==a[0]?!1:this.getJzu().cachePngjFile(this,a)},"~A");c(c$,"spardirPut",function(a,b){null==this.spardirCache&&(this.spardirCache=new java.util.Hashtable);this.spardirCache.put(a,b)},"~S,~A");c(c$,"clearPngjCache",function(a){null==this.pngjCache||null!=a&&!this.pngjCache.containsKey(a)||(this.pngjCache=null,JU.Logger.info("PNGJ cache cleared"))},"~S");c(c$,"recachePngjBytes",function(a,b){null!=
this.pngjCache&&this.pngjCache.containsKey(a)&&(this.pngjCache.put(a,b),JU.Logger.info("PNGJ recaching "+a+" ("+b.length+")"))},"~S,~A");c(c$,"getAtomSetCollectionOrBufferedReaderFromZip",function(a,b,d,c,g,e){return this.getJzu().getAtomSetCollectionOrBufferedReaderFromZip(this.fm.vwr,a,b,d,c,g,1,e)},"J.api.JmolAdapter,java.io.InputStream,~S,~A,java.util.Map,~B");c(c$,"spartanFileList",function(a,b){return this.getJzu().spartanFileList(this.fm.vwr.getJzt(),a,b)},"~S,~S");c(c$,"determineSurfaceFileType",
function(a){return this.getJzu().determineSurfaceFileType(a)},"java.io.BufferedReader");c(c$,"getImage",function(a,b,d){return this.getJzu().getImage(a,b,d)},"JV.Viewer,~O,~S");c$.getFileReferences=c(c$,"getFileReferences",function(a,b){for(var d=0;d<JV.FileManager.scriptFilePrefixes.length;d++)for(var c=JV.FileManager.scriptFilePrefixes[d],g=-1;0<=(g=a.indexOf(c,g+1));){var e=JU.PT.getQuotedStringAt(a,g);0<=e.indexOf("::")&&(e=JU.PT.split(e,"::")[1]);b.addLast(e)}},"~S,JU.Lst");c$.getManifestScriptPath=
c(c$,"getManifestScriptPath",function(a){if(0<=a.indexOf("$SCRIPT_PATH$"))return"";var b=0<=a.indexOf("\n")?"\n":"\r";if(0<=a.indexOf(".spt")){a=JU.PT.split(a,b);for(b=a.length;0<=--b;)if(0<=a[b].indexOf(".spt"))return"|"+JU.PT.trim(a[b],"\r\n \t")}return null},"~S");c$.getBufferedReaderForResource=c(c$,"getBufferedReaderForResource",function(a,b,d,c){c=a.vwrOptions.get("codePath")+d+c;if(a.async){a=a.fm.cacheGet(c,!1);if(null==a)throw new JV.JmolAsyncException(c);return JU.Rdr.getBufferedReader(JU.Rdr.getBIS(a),
null)}return a.fm.getBufferedReaderOrErrorMessageFromName(c,[null,null],!1,!0)},"JV.Viewer,~O,~S,~S");C(c$,"JPEG_CONTINUE_STRING"," #Jmol...\x00","PMESH_BINARY_MAGIC_NUMBER","PM\u0001\x00")}),u("J.render"),v(["J.render.ShapeRenderer"],"J.render.BallsRenderer",["J.shape.Shape"],function(){c$=A(J.render,"BallsRenderer",J.render.ShapeRenderer);j(c$,"render",function(){var a=!1;if(this.isExport||this.vwr.checkMotionRendering(1141899265))for(var b=this.ms.at,d=this.shape.colixes,c=this.vwr.shm.bsRenderableAtoms,
g=c.nextSetBit(0);0<=g;g=c.nextSetBit(g+1)){var e=b[g];0<e.sD&&0!=(e.shapeVisibilityFlags&this.myVisibilityFlag)&&(this.g3d.setC(null==d?e.colixAtom:J.shape.Shape.getColix(d,g,e))?this.g3d.drawAtom(e):a=!0)}return a})}),u("J.render"),v(["J.render.ShapeRenderer","JU.P3","$.P3i","$.V3"],"J.render.FontLineShapeRenderer",["java.lang.Float","JU.PT"],function(){c$=s(function(){this.imageFontScaling=0;this.tickInfo=this.vectorT3=this.vectorT2=this.vectorT=this.pointT3=this.pointT2=this.pointT=this.s2=this.s1=
this.pt2i=this.pt1i=this.pt0i=this.font3d=this.atomB=this.atomA=null;this.draw000=!0;this.width=0;this.endcap=3;this.colixB=this.colixA=0;this.dotsOrDashes=!1;this.dashDots=null;this.asLineOnly=!1;p(this,arguments)},J.render,"FontLineShapeRenderer",J.render.ShapeRenderer);N(c$,function(){this.pt0i=new JU.P3i;this.pt1i=new JU.P3i;this.pt2i=new JU.P3i;this.s1=new JU.P3i;this.s2=new JU.P3i;this.pointT=new JU.P3;this.pointT2=new JU.P3;this.pointT3=new JU.P3;this.vectorT=new JU.V3;this.vectorT2=new JU.V3;
this.vectorT3=new JU.V3});c(c$,"getDiameter",function(a,b){var d;d=20<b;switch(this.exportType){case 1:d=d?b:x(Math.floor(1E3*this.vwr.tm.unscaleToScreen(a,2*b)));break;default:d?d=z(this.vwr.tm.scaleToScreen(a,b)):(this.g3d.isAntialiased()&&(b+=b),d=b)}return d},"~N,~N");c(c$,"renderLine",function(a,b,d,c,g,e){c.set(x(Math.floor(a.x)),x(Math.floor(a.y)),x(Math.floor(a.z)));g.set(x(Math.floor(b.x)),x(Math.floor(b.y)),x(Math.floor(b.z)));0>d?this.g3d.drawDottedLine(c,g):this.g3d.fillCylinder(this.endcap,
d,c,g);e&&null!=this.tickInfo&&(this.atomA.sX=c.x,this.atomA.sY=c.y,this.atomA.sZ=c.z,this.atomB.sX=g.x,this.atomB.sY=g.y,this.atomB.sZ=g.z,this.drawTicks(this.atomA,this.atomB,d,!0))},"JU.P3,JU.P3,~N,JU.P3i,JU.P3i,~B");c(c$,"drawTicks",function(a,b,d,c){Float.isNaN(this.tickInfo.first)&&(this.tickInfo.first=0);this.drawTicks2(a,b,this.tickInfo.ticks.x,8,d,!c?null:null==this.tickInfo.tickLabelFormats?["%0.2f"]:this.tickInfo.tickLabelFormats);this.drawTicks2(a,b,this.tickInfo.ticks.y,4,d,null);this.drawTicks2(a,
b,this.tickInfo.ticks.z,2,d,null)},"JU.Point3fi,JU.Point3fi,~N,~B");c(c$,"drawTicks2",function(a,b,d,c,g,e){if(0!=d&&(this.g3d.isAntialiased()&&(c*=2),this.vectorT2.set(b.sX,b.sY,0),this.vectorT.set(a.sX,a.sY,0),this.vectorT2.sub(this.vectorT),!(50>this.vectorT2.length()))){var h=this.tickInfo.signFactor;this.vectorT.sub2(b,a);var l=this.vectorT.length();if(null!=this.tickInfo.scale)if(Float.isNaN(this.tickInfo.scale.x)){var k=this.vwr.getUnitCellInfo(0);Float.isNaN(k)||this.vectorT.set(this.vectorT.x/
k,this.vectorT.y/this.vwr.getUnitCellInfo(1),this.vectorT.z/this.vwr.getUnitCellInfo(2))}else this.vectorT.set(this.vectorT.x*this.tickInfo.scale.x,this.vectorT.y*this.tickInfo.scale.y,this.vectorT.z*this.tickInfo.scale.z);k=this.vectorT.length()+1E-4*d;if(!(k<d)){this.vectorT.scale(d/k*l/k);b=(b.sZ-a.sZ)/(k/d);k+=this.tickInfo.first;l=x(Math.floor(this.tickInfo.first/d))*d-this.tickInfo.first;this.pointT.scaleAdd2(l/d,this.vectorT,a);l+=this.tickInfo.first;a=a.sZ;0>g&&(g=1);this.vectorT2.set(-this.vectorT2.y,
this.vectorT2.x,0);this.vectorT2.scale(c/this.vectorT2.length());c=this.tickInfo.reference;null==c?(this.pointT3.setT(this.vwr.getBoundBoxCenter()),603979810==this.vwr.g.axesMode&&this.pointT3.add3(1,1,1)):this.pointT3.setT(c);this.tm.transformPtScr(this.pointT3,this.pt2i);c=0.2>Math.abs(this.vectorT2.x/this.vectorT2.y);for(var j=!c,m=!c&&0>this.vectorT2.x,r=null!=e&&0<e.length,y,w,p=Array(1),q=this.draw000?0:-1;l<k;){if(l>=this.tickInfo.first&&(this.pointT2.setT(this.pointT),this.tm.transformPt3f(this.pointT2,
this.pointT2),this.drawLine(x(Math.floor(this.pointT2.x)),x(Math.floor(this.pointT2.y)),z(a),y=x(Math.floor(this.pointT2.x+this.vectorT2.x)),w=x(Math.floor(this.pointT2.y+this.vectorT2.y)),z(a),g),r&&(this.draw000||0!=l))){p[0]=Float.$valueOf(0==l?0:l*h);var s=JU.PT.sprintf(e[q%e.length],"f",p);this.drawString(y,w,z(a),4,m,c,j,x(Math.floor(this.pointT2.y)),s)}this.pointT.add(this.vectorT);l+=d;a+=b;q++}}}},"JU.Point3fi,JU.Point3fi,~N,~N,~N,~A");c(c$,"drawLine",function(a,b,d,c,g,e,h){return this.drawLine2(a,
b,d,c,g,e,h)},"~N,~N,~N,~N,~N,~N,~N");c(c$,"drawLine2",function(a,b,d,c,g,e,h){this.pt0i.set(a,b,d);this.pt1i.set(c,g,e);if(this.dotsOrDashes)null!=this.dashDots&&this.drawDashed(a,b,d,c,g,e,this.dashDots);else{if(0>h)return this.g3d.drawDashedLine(4,2,this.pt0i,this.pt1i),1;this.g3d.fillCylinder(2,h,this.pt0i,this.pt1i)}return x((h+1)/2)},"~N,~N,~N,~N,~N,~N,~N");c(c$,"drawString",function(a,b,d,c,g,e,h,l,k){if(null!=k){var j=this.font3d.stringWidth(k),m=this.font3d.getAscent();a=g?a-(x(c/2)+2+j):
e?a-(x(c/2)+2+x(j/2)):a+(x(c/2)+2);g=b;g=h?g+x(m/2):0==l||l<b?g+m:g-x(c/2);b=d-c-2;1>b&&(b=1);this.g3d.drawString(k,this.font3d,a,g,b,b,0)}},"~N,~N,~N,~N,~B,~B,~B,~N,~S");c(c$,"drawDashed",function(a,b,d,c,g,e,h){if(!(null==h||0>this.width)){var l=h[0];c-=a;g-=b;e-=d;var k=0,j=h===J.render.FontLineShapeRenderer.ndots,m=j||h===J.render.FontLineShapeRenderer.sixdots;if(m){var r=(c*c+g*g)/(this.width*this.width);j?(l=Math.sqrt(r)/1.5,k=z(l)+3):8>r?h=J.render.FontLineShapeRenderer.twodots:32>r&&(h=J.render.FontLineShapeRenderer.fourdots)}var r=
h[1],y=h[2],w=this.colixA,p=0==y?this.colixB:this.colixA;0==k&&(k=h.length);for(var q=0,s=3;s<k;s++){var q=j?q+1:h[s],t=x(Math.floor(a+c*q/l)),u=x(Math.floor(b+g*q/l)),v=x(Math.floor(d+e*q/l));if(m)this.s1.set(t,u,v),s==r?this.g3d.setC(this.colixA):s==y&&this.g3d.setC(this.colixB),this.g3d.fillSphereI(this.width,this.s1);else{s==r&&(w=this.colixB);q=h[++s];s==y&&(p=this.colixB);var A=x(Math.floor(a+c*q/l)),B=x(Math.floor(b+g*q/l)),C=x(Math.floor(d+e*q/l));this.fillCylinder(w,p,2,this.width,t,u,v,
A,B,C)}}}},"~N,~N,~N,~N,~N,~N,~A");c(c$,"fillCylinder",function(a,b,d,c,g,e,h,l,k,j){this.asLineOnly?this.g3d.drawLine(a,b,g,e,h,l,k,j):this.g3d.fillCylinderXYZ(a,b,d,!this.isExport||1==this.mad?c:this.mad,g,e,h,l,k,j)},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");C(c$,"dashes",[12,0,0,2,5,7,10],"hDashes",[10,7,6,1,3,4,6,7,9],"ndots",[0,3,1E3],"sixdots",[12,3,6,1,3,5,7,9,11],"fourdots",[13,3,5,2,5,8,11],"twodots",[12,3,4,3,9])}),u("J.render"),v(["J.render.ShapeRenderer"],"J.render.FrankRenderer",["JU.C"],function(){c$=
A(J.render,"FrankRenderer",J.render.ShapeRenderer);j(c$,"render",function(){var a=this.shape,b=this.vwr.getBooleanProperty("allowKeyStrokes"),d=this.vwr.getBoolean(603979883);this.colix=d?20:this.vwr.isSignedApplet?b||this.vwr.isJS&&!this.vwr.isWebGL?5:10:b?7:12;if(this.isExport||!this.vwr.getShowFrank())return!1;if(!this.g3d.setC(JU.C.getColixTranslucent3(this.colix,this.g3d.haveTranslucentObjects(),0.5)))return!0;b=this.vwr.getImageFontScaling();a.getFont(b);var b=z(a.frankWidth+4*b),c=a.frankDescent;
this.g3d.drawStringNoSlab(a.frankString,a.font3d,this.vwr.gdata.width-b,this.vwr.gdata.height-c,0,0);d&&this.g3d.fillRect(0,0,0,0,2*c,x(3*b/2));return!1})}),u("J.render"),v(["J.api.JmolRepaintManager","JU.BS"],"J.render.RepaintManager",["java.lang.NullPointerException","J.api.Interface","JU.Logger","JV.JC"],function(){c$=s(function(){this.bsTranslucent=this.renderers=this.shapeManager=this.vwr=null;this.holdRepaint=0;this.repaintPending=!1;p(this,arguments)},J.render,"RepaintManager",null,J.api.JmolRepaintManager);
N(c$,function(){this.bsTranslucent=JU.BS.newN(37)});t(c$,function(){});j(c$,"set",function(a,b){this.vwr=a;this.shapeManager=b},"JV.Viewer,JV.ShapeManager");j(c$,"isRepaintPending",function(){return this.repaintPending});j(c$,"pushHoldRepaint",function(){++this.holdRepaint},"~S");j(c$,"popHoldRepaint",function(a,b){--this.holdRepaint;0>=this.holdRepaint&&(this.holdRepaint=0,a&&(this.repaintPending=!0,this.repaintNow(b)))},"~B,~S");j(c$,"requestRepaintAndWait",function(){"undefined"!=typeof Jmol&&
Jmol._repaint&&Jmol._repaint(this.vwr.html5Applet,!1);this.repaintDone()},"~S");j(c$,"repaintIfReady",function(a){if(this.repaintPending)return!1;this.repaintPending=!0;0==this.holdRepaint&&this.repaintNow(a);return!0},"~S");c(c$,"repaintNow",function(){this.vwr.haveDisplay&&this.vwr.apiPlatform.repaint(this.vwr.display)},"~S");j(c$,"repaintDone",function(){this.repaintPending=!1});j(c$,"clear",function(a){if(null!=this.renderers)if(0<=a)this.renderers[a]=null;else for(a=0;37>a;++a)this.renderers[a]=
null},"~N");c(c$,"getRenderer",function(a){if(null!=this.renderers[a])return this.renderers[a];var b=JV.JC.getShapeClassName(a,!0)+"Renderer";if(null==(b=J.api.Interface.getInterface(b,this.vwr,"render")))return null;b.setViewerG3dShapeID(this.vwr,a);return this.renderers[a]=b},"~N");j(c$,"render",function(a,b,d,c){null==this.renderers&&(this.renderers=Array(37));this.getAllRenderers();try{var g=this.vwr.getBoolean(603979934);a.renderBackground(null);if(d){this.bsTranslucent.clearAll();null!=c&&a.renderCrossHairs(c,
this.vwr.getScreenWidth(),this.vwr.getScreenHeight(),this.vwr.tm.getNavigationOffset(),this.vwr.tm.navigationDepthPercent);var e=this.vwr.getRubberBandSelection();null!=e&&a.setC(this.vwr.cm.colixRubberband)&&a.drawRect(e.x,e.y,0,0,e.width,e.height)}c=null;for(e=0;37>e&&a.currentlyRendering;++e){var h=this.shapeManager.getShape(e);null!=h&&(g&&(c="rendering "+JV.JC.getShapeClassName(e,!1),JU.Logger.startTimer(c)),(d||this.bsTranslucent.get(e))&&this.getRenderer(e).renderShape(a,b,h)&&this.bsTranslucent.set(e),
g&&JU.Logger.checkTimer(c,!1))}a.renderAllStrings(null)}catch(l){if(B(l,Exception)){this.vwr.isJS||l.printStackTrace();if(this.vwr.async&&"Interface".equals(l.getMessage()))throw new NullPointerException;JU.Logger.error("rendering error? "+l)}else throw l;}},"JU.GData,JM.ModelSet,~B,~A");c(c$,"getAllRenderers",function(){for(var a=!0,b=0;37>b;++b)null==this.shapeManager.getShape(b)||null!=this.getRenderer(b)||(a=this.repaintPending=!this.vwr.async);if(!a)throw new NullPointerException;});j(c$,"renderExport",
function(a,b,d){this.vwr.finalizeTransformParameters();this.shapeManager.finalizeAtoms(null,null);a=this.vwr.initializeExporter(d);if(null==a)return JU.Logger.error("Cannot export "+d.get("type")),null;null==this.renderers&&(this.renderers=Array(37));this.getAllRenderers();d=null;try{var c=this.vwr.getBoolean(603979934);a.renderBackground(a);for(var g=0;37>g;++g){var e=this.shapeManager.getShape(g);null!=e&&(c&&(d="rendering "+JV.JC.getShapeClassName(g,!1),JU.Logger.startTimer(d)),this.getRenderer(g).renderShape(a,
b,e),c&&JU.Logger.checkTimer(d,!1))}a.renderAllStrings(a);d=a.finalizeOutput()}catch(h){if(B(h,Exception))this.vwr.isJS||h.printStackTrace(),JU.Logger.error("rendering error? "+h);else throw h;}return d},"JU.GData,JM.ModelSet,java.util.Map")}),u("J.render"),v(null,"J.render.ShapeRenderer",["JV.JC"],function(){c$=s(function(){this.shape=this.ms=this.g3d=this.tm=this.vwr=null;this.exportType=this.madEnd=this.madMid=this.madBeg=this.mad=this.colix=this.shapeID=this.myVisibilityFlag=0;this.isExport=!1;
p(this,arguments)},J.render,"ShapeRenderer");c(c$,"initRenderer",function(){});c(c$,"setViewerG3dShapeID",function(a,b){this.vwr=a;this.tm=a.tm;this.shapeID=b;this.myVisibilityFlag=JV.JC.getShapeVisibilityFlag(b);this.initRenderer()},"JV.Viewer,~N");c(c$,"renderShape",function(a,b,d){this.g3d=a;this.ms=b;this.shape=d;this.exportType=a.getExportType();this.isExport=0!=this.exportType;a=this.render();this.exportType=0;this.isExport=!1;return a},"J.api.JmolRendererInterface,JM.ModelSet,J.shape.Shape");
c(c$,"isVisibleForMe",function(a){return a.isVisible(this.myVisibilityFlag|9)},"JM.Atom")}),u("J.render"),v(["J.render.FontLineShapeRenderer","JU.BS","$.P3","$.V3"],"J.render.SticksRenderer",["java.lang.Float","J.c.PAL","JM.Bond","JU.C","$.Edge"],function(){c$=s(function(){this.showMultipleBonds=!1;this.modeMultipleBond=this.multipleBondRadiusFactor=this.multipleBondSpacing=0;this.isCartesianExport=!1;this.endcaps=0;this.hbondsSolid=this.bondsBackbone=this.hbondsBackbone=this.ssbondsBackbone=!1;this.bond=
this.b=this.a=null;this.bondOrder=this.mag2d=this.dy=this.dx=this.zB=this.yB=this.xB=this.zA=this.yA=this.xA=0;this.slabByAtom=this.slabbing=this.isAntialiased=this.wireframeOnly=!1;this.bsForPass2=this.p2=this.p1=this.z=this.y=this.x=null;this.isPass2=!1;this.dyStep=this.dxStep=this.yAxis2=this.xAxis2=this.yAxis1=this.xAxis1=0;p(this,arguments)},J.render,"SticksRenderer",J.render.FontLineShapeRenderer);N(c$,function(){this.x=new JU.V3;this.y=new JU.V3;this.z=new JU.V3;this.p1=new JU.P3;this.p2=new JU.P3;
this.bsForPass2=JU.BS.newN(64)});j(c$,"render",function(){var a=this.ms.bo;if(null==a)return!1;(this.isPass2=this.vwr.gdata.isPass2)||this.bsForPass2.clearAll();this.slabbing=this.tm.slabEnabled;this.slabByAtom=this.vwr.getBoolean(603979939);this.endcaps=3;this.dashDots=this.vwr.getBoolean(603979889)?J.render.FontLineShapeRenderer.sixdots:J.render.FontLineShapeRenderer.dashes;this.isCartesianExport=1==this.exportType;this.getMultipleBondSettings(!1);this.wireframeOnly=!this.vwr.checkMotionRendering(1678770178);
this.ssbondsBackbone=this.vwr.getBoolean(603979952);this.hbondsBackbone=this.vwr.getBoolean(603979852);this.bondsBackbone=(new Boolean(this.hbondsBackbone|this.ssbondsBackbone)).valueOf();this.hbondsSolid=this.vwr.getBoolean(603979854);this.isAntialiased=this.g3d.isAntialiased();var b=!1;if(!this.isExport&&this.isPass2)for(var d=this.bsForPass2.nextSetBit(0);0<=d;d=this.bsForPass2.nextSetBit(d+1))this.bond=a[d],this.renderBond();else for(d=this.ms.bondCount;0<=--d;)this.bond=a[d],0!=(this.bond.shapeVisibilityFlags&
this.myVisibilityFlag)&&this.renderBond()&&(b=!0,this.bsForPass2.set(d));return b});c(c$,"getMultipleBondSettings",function(a){this.multipleBondSpacing=a?0.15:this.vwr.getFloat(570425370);this.multipleBondRadiusFactor=a?0.4:this.vwr.getFloat(570425369);0==this.multipleBondSpacing&&this.isCartesianExport&&(this.multipleBondSpacing=0.2);this.modeMultipleBond=this.vwr.g.modeMultipleBond;this.showMultipleBonds=0!=this.multipleBondSpacing&&0!=this.modeMultipleBond&&this.vwr.getBoolean(603979928)},"~B");
c(c$,"renderBond",function(){var a,b;this.a=a=this.bond.atom1;this.b=b=this.bond.atom2;var d=this.bond.order&-131073;this.bondsBackbone&&(this.ssbondsBackbone&&0!=(d&256)?(this.a=this.a.group.getLeadAtomOr(this.a),this.b=this.b.group.getLeadAtomOr(this.b)):this.hbondsBackbone&&JM.Bond.isOrderH(d)&&(this.a=this.a.group.getLeadAtomOr(this.a),this.b=this.b.group.getLeadAtomOr(this.b)));if(!this.isPass2&&(!this.a.isVisible(9)||!this.b.isVisible(9)||!this.g3d.isInDisplayRange(this.a.sX,this.a.sY)||!this.g3d.isInDisplayRange(this.b.sX,
this.b.sY))||this.slabbing&&(this.vwr.gdata.isClippedZ(this.a.sZ)&&this.vwr.gdata.isClippedZ(this.b.sZ)||this.slabByAtom&&(this.vwr.gdata.isClippedZ(this.a.sZ)||this.vwr.gdata.isClippedZ(this.b.sZ))))return!1;this.zA=this.a.sZ;this.zB=this.b.sZ;if(1==this.zA||1==this.zB)return!1;this.colixA=a.colixAtom;this.colixB=b.colixAtom;2==((this.colix=this.bond.colix)&-30721)?(this.colix&=30720,this.colixA=JU.C.getColixInherited(this.colix|this.vwr.cm.getColixAtomPalette(a,J.c.PAL.CPK.id),this.colixA),this.colixB=
JU.C.getColixInherited(this.colix|this.vwr.cm.getColixAtomPalette(b,J.c.PAL.CPK.id),this.colixB)):(this.colixA=JU.C.getColixInherited(this.colix,this.colixA),this.colixB=JU.C.getColixInherited(this.colix,this.colixB));a=!1;if(!this.isExport&&!this.isPass2){b=!JU.C.isColixTranslucent(this.colixA);var c=!JU.C.isColixTranslucent(this.colixB);if(!b||!c){if(!b&&!c&&!a)return this.g3d.setC(!b?this.colixA:this.colixB),!0;a=!0}}this.bondOrder=d&-131073;if(0==(this.bondOrder&224)&&(0!=(this.bondOrder&256)&&
(this.bondOrder&=-257),0!=(this.bondOrder&1023)&&(!this.showMultipleBonds||2==this.modeMultipleBond&&500<this.mad||65536==(this.bondOrder&98304))))this.bondOrder=1;b=0;switch(this.bondOrder){case 1:case 2:case 3:case 4:break;case 17:case 513:this.bondOrder=1;b=513==d?0:1;break;case 515:case 514:this.bondOrder=2;b=515==d?this.getAromaticDottedBondMask():0;break;default:0!=(this.bondOrder&224)?(this.bondOrder=JU.Edge.getPartialBondOrder(d),b=JU.Edge.getPartialBondDotted(d)):JM.Bond.isOrderH(this.bondOrder)?
(this.bondOrder=1,this.hbondsSolid||(b=-1)):32768==this.bondOrder?this.bondOrder=1:98304==(this.bondOrder&98304)&&(this.getMultipleBondSettings(!0),this.bondOrder&=3,b=-2)}this.xA=this.a.sX;this.yA=this.a.sY;this.xB=this.b.sX;this.yB=this.b.sY;this.mad=this.bond.mad;0<this.multipleBondRadiusFactor&&1<this.bondOrder&&(this.mad*=this.multipleBondRadiusFactor);this.dx=this.xB-this.xA;this.dy=this.yB-this.yA;this.width=z(this.vwr.tm.scaleToScreen(x((this.zA+this.zB)/2),this.mad));this.wireframeOnly&&
0<this.width&&(this.width=1);if(!this.isCartesianExport&&(this.asLineOnly=1>=this.width)&&this.isAntialiased)this.width=3,this.asLineOnly=!1;switch(b){case -2:this.drawBond(0);this.getMultipleBondSettings(!1);break;case -1:this.drawDashed(this.xA,this.yA,this.zA,this.xB,this.yB,this.zB,J.render.FontLineShapeRenderer.hDashes);break;default:this.drawBond(b)}return a});c(c$,"drawBond",function(a){if(this.isCartesianExport&&1==this.bondOrder)this.g3d.drawBond(this.a,this.b,this.colixA,this.colixB,this.endcaps,
this.mad,-1);else{var b=0==this.dx&&0==this.dy;if(!b||!this.asLineOnly){var d=1<this.bondOrder&&0<this.multipleBondSpacing,c=d&&(null!=this.vwr.getHybridizationAndAxes(this.a.i,this.z,this.x,"pz")||null!=this.vwr.getHybridizationAndAxes(this.b.i,this.z,this.x,"pz"))&&!Float.isNaN(this.x.x);if(b&&!d){a=x(this.width/8)+3;a=this.width+a;d=this.yA-x((this.bondOrder-1)*a/2);do this.fillCylinder(this.colixA,this.colixA,this.endcaps,this.width,this.xA,d,this.zA,this.xA,d,this.zA),d+=a;while(0<--this.bondOrder)}else if(b=
0!=(a&1),1==this.bondOrder)b?this.drawDashed(this.xA,this.yA,this.zA,this.xB,this.yB,this.zB,this.dashDots):this.fillCylinder(this.colixA,this.colixB,this.endcaps,this.width,this.xA,this.yA,this.zA,this.xB,this.yB,this.zB);else if(d){c||this.z.setT(JU.P3.getUnlikely());this.x.sub2(this.b,this.a);this.y.cross(this.x,this.z);this.y.normalize();Float.isNaN(this.y.x)&&(this.z.setT(JU.P3.getUnlikely()),this.y.cross(this.x,this.z),this.y.cross(this.y,this.x),this.y.normalize());this.y.scale(this.multipleBondSpacing);
this.x.setT(this.y);this.x.scale((this.bondOrder-1)/2);this.p1.sub2(this.a,this.x);for(this.p2.sub2(this.b,this.x);;){this.isCartesianExport&&!b?this.g3d.drawBond(this.p1,this.p2,this.colixA,this.colixB,this.endcaps,this.mad,-2):(this.tm.transformPtScr(this.p1,this.s1),this.tm.transformPtScr(this.p2,this.s2),b?this.drawDashed(this.s1.x,this.s1.y,this.s1.z,this.s2.x,this.s2.y,this.s2.z,this.dashDots):this.fillCylinder(this.colixA,this.colixB,this.endcaps,this.width,this.s1.x,this.s1.y,this.s1.z,this.s2.x,
this.s2.y,this.s2.z),a>>=1,b=0!=(a&1));if(0>=--this.bondOrder)break;this.p1.add(this.y);this.p2.add(this.y);this.stepAxisCoordinates()}}else{this.mag2d=Math.round(Math.sqrt(this.dx*this.dx+this.dy*this.dy));for(this.resetAxisCoordinates();;){0!=(a&1)?this.drawDashed(this.xAxis1,this.yAxis1,this.zA,this.xAxis2,this.yAxis2,this.zB,this.dashDots):this.fillCylinder(this.colixA,this.colixB,this.endcaps,this.width,this.xAxis1,this.yAxis1,this.zA,this.xAxis2,this.yAxis2,this.zB);a>>=1;if(0>=--this.bondOrder)break;
this.stepAxisCoordinates()}}}}},"~N");c(c$,"resetAxisCoordinates",function(){var a=this.mag2d>>3;-1!=this.multipleBondSpacing&&0>this.multipleBondSpacing&&(a*=-this.multipleBondSpacing);a=this.width+a;this.dxStep=x(a*this.dy/this.mag2d);this.dyStep=x(a*-this.dx/this.mag2d);this.xAxis1=this.xA;this.yAxis1=this.yA;this.xAxis2=this.xB;this.yAxis2=this.yB;a=this.bondOrder-1;this.xAxis1-=x(this.dxStep*a/2);this.yAxis1-=x(this.dyStep*a/2);this.xAxis2-=x(this.dxStep*a/2);this.yAxis2-=x(this.dyStep*a/2)});
c(c$,"stepAxisCoordinates",function(){this.xAxis1+=this.dxStep;this.yAxis1+=this.dyStep;this.xAxis2+=this.dxStep;this.yAxis2+=this.dyStep});c(c$,"getAromaticDottedBondMask",function(){var a=this.b.findAromaticNeighbor(this.a.i);return null==a?1:0>this.dx*(a.sY-this.yA)-this.dy*(a.sX-this.xA)?2:1})}),u("JS"),v(["JS.T"],"JS.ContextToken",["java.util.Hashtable","JS.SV"],function(){c$=s(function(){this.name0=this.contextVariables=null;p(this,arguments)},JS,"ContextToken",JS.T);c$.newContext=c(c$,"newContext",
function(a){a=a?JS.ContextToken.newCmd(1276384259,"{"):JS.ContextToken.newCmd(1276383249,"}");a.intValue=0;return a},"~B");c$.newCmd=c(c$,"newCmd",function(a,b){var d=new JS.ContextToken;d.tok=a;d.value=b;return d},"~N,~O");c(c$,"addName",function(a){null==this.contextVariables&&(this.contextVariables=new java.util.Hashtable);this.contextVariables.put(a,JS.SV.newS("").setName(a))},"~S")}),u("JS"),v(null,"JS.ScriptContext",["java.util.Hashtable","JS.SV"],function(){c$=s(function(){this.aatoken=null;
this.chk=this.allowJSThreads=!1;this.contextPath=" >> ";this.vars=null;this.displayLoadErrorsSave=!1;this.errorType=this.errorMessageUntranslated=this.errorMessage=null;this.executionStepping=this.executionPaused=!1;this.functionName=null;this.iCommandError=-1;this.id=0;this.isComplete=!0;this.isTryCatch=this.isStateScript=this.isJSThread=this.isFunction=!1;this.iToken=0;this.lineEnd=2147483647;this.lineNumbers=this.lineIndices=null;this.mustResumeEval=!1;this.parentContext=this.parallelProcessor=
this.outputBuffer=null;this.pc0=this.pc=0;this.pcEnd=2147483647;this.scriptFileName=this.scriptExtensions=this.script=null;this.scriptLevel=0;this.htFileCache=this.statement=null;this.statementLength=0;this.token=null;this.tryPt=0;this.theToken=null;this.theTok=0;p(this,arguments)},JS,"ScriptContext");t(c$,function(){this.id=++JS.ScriptContext.contextCount});c(c$,"setMustResume",function(){for(var a=this;null!=a;)a.mustResumeEval=!0,a.pc=a.pc0,a=a.parentContext});c(c$,"getVariable",function(a){for(var b=
this;null!=b&&!b.isFunction;){if(null!=b.vars&&b.vars.containsKey(a))return b.vars.get(a);b=b.parentContext}return null},"~S");c(c$,"getFullMap",function(){var a=new java.util.Hashtable,b=this;for(null!=this.contextPath&&a.put("_path",JS.SV.newS(this.contextPath));null!=b&&!b.isFunction;){if(null!=b.vars)for(var d,c=b.vars.keySet().iterator();c.hasNext()&&((d=c.next())||1);)if(!a.containsKey(d)){var g=b.vars.get(d);(2!=g.tok||2147483647!=g.intValue)&&a.put(d,g)}b=b.parentContext}return a});C(c$,"contextCount",
0)}),u("JS"),v(["java.lang.Exception"],"JS.ScriptException",null,function(){c$=s(function(){this.untranslated=this.message=this.eval=null;this.isError=!1;p(this,arguments)},JS,"ScriptException",Exception);t(c$,function(a,b,d,c){this.eval=a;this.message=b;(this.isError=c)&&this.eval.setException(this,b,d)},"JS.ScriptError,~S,~S,~B");c(c$,"getErrorMessageUntranslated",function(){return this.untranslated});j(c$,"toString",function(){return this.message})}),u("JS"),v(["javajs.api.JSONEncodable","JS.T",
"JU.P3"],"JS.SV","java.lang.Boolean $.Float java.util.Arrays $.Collections $.Hashtable $.Map JU.AU $.BArray $.BS $.Base64 $.Lst $.M3 $.M34 $.M4 $.Measure $.P4 $.PT $.Quat $.SB $.T3 $.V3 JM.BondSet JS.ScriptContext JU.BSUtil $.Escape".split(" "),function(){c$=s(function(){this.index=2147483647;this.flags=2;this.myName=null;S("JS.SV.Sort")||JS.SV.$SV$Sort$();p(this,arguments)},JS,"SV",JS.T,javajs.api.JSONEncodable);c$.newV=c(c$,"newV",function(a,b){var d=new JS.SV;d.tok=a;d.value=b;return d},"~N,~O");
c$.newI=c(c$,"newI",function(a){var b=new JS.SV;b.tok=2;b.intValue=a;return b},"~N");c$.newS=c(c$,"newS",function(a){return JS.SV.newV(4,a)},"~S");c$.newT=c(c$,"newT",function(a){return JS.SV.newSV(a.tok,a.intValue,a.value)},"JS.T");c$.newSV=c(c$,"newSV",function(a,b,d){a=JS.SV.newV(a,d);a.intValue=b;return a},"~N,~N,~O");c(c$,"setv",function(a){this.index=a.index;this.intValue=a.intValue;this.tok=a.tok;this.value=a.value;return this},"JS.SV");c$.sizeOf=c(c$,"sizeOf",function(a){switch(null==a?0:
a.tok){case 10:return JU.BSUtil.cardinalityOf(JS.SV.bsSelectToken(a));case 1048589:case 1048588:return-1;case 2:return-2;case 3:return-4;case 8:return-8;case 9:return-16;case 11:return-32;case 12:return-64;case 15:return a.value.data.length;case 4:return a.value.length;case 7:return 2147483647==a.intValue?a.getList().size():JS.SV.sizeOf(JS.SV.selectItemTok(a,-2147483648));case 6:return a.value.size();case 14:return a.value.getFullMap().size();default:return 0}},"JS.T");c$.isVariableType=c(c$,"isVariableType",
function(a){return q(a,JS.SV)||q(a,Boolean)||q(a,Integer)||q(a,Float)||q(a,String)||q(a,JU.T3)||q(a,JU.BS)||q(a,JU.P4)||q(a,JU.Quat)||q(a,JU.M34)||q(a,java.util.Map)||q(a,JU.Lst)||q(a,JU.BArray)||q(a,JS.ScriptContext)||JS.SV.isArray(a)},"~O");c$.isArray=c(c$,"isArray",function(a){return q(a,Array)},"~O");c$.getVariable=c(c$,"getVariable",function(a){return null==a?JS.SV.newS(""):q(a,JS.SV)?a:q(a,Boolean)?JS.SV.getBoolean(a.booleanValue()):q(a,Integer)?JS.SV.newI(a.intValue()):q(a,Float)?JS.SV.newV(3,
a):q(a,String)?(a=JS.SV.unescapePointOrBitsetAsVariable(a),q(a,JS.SV)?a:JS.SV.newV(4,a)):q(a,JU.P3)?JS.SV.newV(8,a):q(a,JU.V3)?JS.SV.newV(8,JU.P3.newP(a)):q(a,JU.BS)?JS.SV.newV(10,a):q(a,JU.P4)?JS.SV.newV(9,a):q(a,JU.Quat)?JS.SV.newV(9,a.toPoint4f()):q(a,JU.M34)?JS.SV.newV(q(a,JU.M4)?12:11,a):q(a,java.util.Map)?JS.SV.getVariableMap(a):q(a,JU.Lst)?JS.SV.getVariableList(a):q(a,JU.BArray)?JS.SV.newV(15,a):q(a,JS.ScriptContext)?JS.SV.newV(14,a):JU.Escape.isAV(a)?JS.SV.getVariableAV(a):JU.PT.isAI(a)?JS.SV.getVariableAI(a):
JU.PT.isAB(a)?JS.SV.getVariableAB(a):JU.PT.isAF(a)?JS.SV.getVariableAF(a):JU.PT.isAD(a)?JS.SV.getVariableAD(a):JU.PT.isAS(a)?JS.SV.getVariableAS(a):JU.PT.isAP(a)?JS.SV.getVariableAP(a):JU.PT.isAII(a)?JS.SV.getVariableAII(a):JU.PT.isAFF(a)?JS.SV.getVariableAFF(a):JU.PT.isASS(a)?JS.SV.getVariableASS(a):JU.PT.isADD(a)?JS.SV.getVariableADD(a):JU.PT.isAFloat(a)?JS.SV.newV(13,a):JS.SV.newS(a.toString())},"~O");c$.getVariableMap=c(c$,"getVariableMap",function(a){for(var b=a,d=null,c,g=b.values().iterator();g.hasNext()&&
((c=g.next())||1);){d=c;break}if(!q(d,JS.SV)){a=new java.util.Hashtable;for(var e,b=b.entrySet().iterator();b.hasNext()&&((e=b.next())||1);)a.put(e.getKey(),JS.SV.getVariable(e.getValue()))}return JS.SV.newV(6,a)},"java.util.Map");c$.getVariableList=c(c$,"getVariableList",function(a){var b=a.size();if(0<b&&q(a.get(0),JS.SV))return JS.SV.newV(7,a);for(var d=new JU.Lst,c=0;c<b;c++)d.addLast(JS.SV.getVariable(a.get(c)));return JS.SV.newV(7,d)},"JU.Lst");c$.getVariableAV=c(c$,"getVariableAV",function(a){for(var b=
new JU.Lst,d=0;d<a.length;d++)b.addLast(a[d]);return JS.SV.newV(7,b)},"~A");c$.getVariableAD=c(c$,"getVariableAD",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.newV(3,Float.$valueOf(a[d])));return JS.SV.newV(7,b)},"~A");c$.getVariableAS=c(c$,"getVariableAS",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.newV(4,a[d]));return JS.SV.newV(7,b)},"~A");c$.getVariableAP=c(c$,"getVariableAP",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.newV(8,
a[d]));return JS.SV.newV(7,b)},"~A");c$.getVariableAFF=c(c$,"getVariableAFF",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.getVariableAF(a[d]));return JS.SV.newV(7,b)},"~A");c$.getVariableADD=c(c$,"getVariableADD",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.getVariableAD(a[d]));return JS.SV.newV(7,b)},"~A");c$.getVariableASS=c(c$,"getVariableASS",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.getVariableAS(a[d]));return JS.SV.newV(7,
b)},"~A");c$.getVariableAII=c(c$,"getVariableAII",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.getVariableAI(a[d]));return JS.SV.newV(7,b)},"~A");c$.getVariableAF=c(c$,"getVariableAF",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.newV(3,Float.$valueOf(a[d])));return JS.SV.newV(7,b)},"~A");c$.getVariableAI=c(c$,"getVariableAI",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.newI(a[d]));return JS.SV.newV(7,b)},"~A");c$.getVariableAB=c(c$,
"getVariableAB",function(a){for(var b=new JU.Lst,d=0;d<a.length;d++)b.addLast(JS.SV.newI(a[d]));return JS.SV.newV(7,b)},"~A");c(c$,"setName",function(a){this.myName=a;this.flags|=1;return this},"~S");c(c$,"isModified",function(){return JS.T.tokAttr(this.flags,2)});c(c$,"setModified",function(a){this.flags=a?this.flags|2:this.flags&-3},"~B");c(c$,"canIncrement",function(){return!0});c(c$,"increment",function(a){if(!this.canIncrement())return!1;switch(this.tok){case 2:this.intValue+=a;break;case 3:this.value=
Float.$valueOf(this.value.floatValue()+a);break;default:return!1}return!0},"~N");c(c$,"asBoolean",function(){return JS.SV.bValue(this)});c(c$,"asInt",function(){return JS.SV.iValue(this)});c(c$,"asFloat",function(){return JS.SV.fValue(this)});c(c$,"asString",function(){return JS.SV.sValue(this)});c$.oValue=c(c$,"oValue",function(a){switch(null==a?0:a.tok){case 1048589:return Boolean.TRUE;case 0:case 1048588:return Boolean.FALSE;case 2:return Integer.$valueOf(a.intValue);case 10:case 135266306:return JS.SV.selectItemVar(a).value;
default:return a.value}},"JS.SV");c$.nValue=c(c$,"nValue",function(a){switch(null==a?0:a.tok){case 3:return a.value;case 2:a=a.intValue;break;case 4:if(0<=a.value.indexOf("."))return Float.$valueOf(JS.SV.toFloat(a.value));a=z(JS.SV.toFloat(a.value));break;case 8:return Float.$valueOf(a.value.length());default:a=0}return Integer.$valueOf(a)},"JS.T");c$.bValue=c(c$,"bValue",function(a){switch(null==a?0:a.tok){case 1048589:case 6:case 14:return!0;case 1048588:return!1;case 2:return 0!=a.intValue;case 3:case 4:case 7:return 0!=
JS.SV.fValue(a);case 10:case 15:return 0!=JS.SV.iValue(a);case 8:case 9:case 11:case 12:return 1E-4<Math.abs(JS.SV.fValue(a));default:return!1}},"JS.T");c$.iValue=c(c$,"iValue",function(a){switch(null==a?0:a.tok){case 1048589:return 1;case 1048588:return 0;case 2:return a.intValue;case 3:case 7:case 4:case 8:case 9:case 11:case 12:return z(JS.SV.fValue(a));case 10:return JU.BSUtil.cardinalityOf(JS.SV.bsSelectToken(a));case 15:return a.value.data.length;default:return 0}},"JS.T");c$.fValue=c(c$,"fValue",
function(a){switch(null==a?0:a.tok){case 1048589:return 1;case 1048588:return 0;case 2:return a.intValue;case 3:return a.value.floatValue();case 7:if(2147483647==a.intValue)return a.getList().size();case 4:return JS.SV.toFloat(JS.SV.sValue(a));case 10:case 15:return JS.SV.iValue(a);case 8:return a.value.length();case 9:return JU.Measure.distanceToPlane(a.value,JS.SV.pt0);case 11:var b=new JU.P3;a.value.rotate(b);return b.length();case 12:return b=new JU.P3,a.value.rotTrans(b),b.length();default:return 0}},
"JS.T");c$.sValue=c(c$,"sValue",function(a){if(null==a)return"";var b;switch(a.tok){case 1048589:return"true";case 1048588:return"false";case 2:return""+a.intValue;case 10:return b=JS.SV.bsSelectToken(a),q(a.value,JM.BondSet)?JU.Escape.eBond(b):JU.Escape.eBS(b);case 7:var d=a.getList();b=a.intValue;0>=b&&(b=d.size()-b);if(2147483647!=b)return 1>b||b>d.size()?"":JS.SV.sValue(d.get(b-1));case 6:case 14:if(q(a.value,String))return a.value;b=new JU.SB;JS.SV.sValueArray(b,a,"","",!1,!0,!0,2147483647,!1);
return JU.PT.rep(b.toString(),"\n\x00"," ");case 4:return d=a.value,b=a.intValue,0>=b&&(b=d.length-b),2147483647==b?d:1>b||b>d.length?"":""+d.charAt(b-1);case 8:return JU.Escape.eP(a.value);case 9:return JU.Escape.eP4(a.value);case 11:case 12:return JU.Escape.e(a.value);default:return a.value.toString()}},"JS.T");c$.sValueArray=c(c$,"sValueArray",function(a,b,d,c,g,e,h,l,k){switch(b.tok){case 6:case 14:case 7:var j=";"+b.hashCode()+";";if(0<=d.indexOf(j)){a.append(g?"{}":null==b.myName?'\x00"<circular reference>"':
"<"+b.myName+">");break}d+=j;if(7==b.tok){if(!h)break;e||a.append(g?"[ ":c+"[\n");b=b.getList();for(j=0;j<b.size();j++){g&&0<j&&a.append(",");var m=b.get(j);JS.SV.sValueArray(a,m,d,c+"  ",g,0==c.length&&!g&&JS.SV.isRawType(m.tok),h,l,k);g||a.append("\n")}e||a.append(g?" ]":c+"]")}else 0<=--l&&(e=14==b.tok?b.value.getFullMap():b.getMap(),JS.SV.addKeys(a,d,e,c,g,h,l,k));break;default:if(!h)break;!e&&!g&&a.append(c);a.append(g?b.escape():JS.SV.sValue(b))}},"JU.SB,JS.SV,~S,~S,~B,~B,~B,~N,~B");c$.addKeys=
c(c$,"addKeys",function(a,b,d,c,g,e,h,l){if(!(0>h)){var k=d.keySet(),k=d.keySet().toArray(Array(k.size()));java.util.Arrays.sort(k);if(g){a.append("{ ");for(var j="",m=0;m<k.length;m++){g=k[m];var r=d.get(g);l&&7==r.tok&&0==r.getList().size()||6==r.tok&&r.getMap().isEmpty()||(e?a.append(j).append(JU.PT.esc(g)).append(":"):a.appendC(" ").append(g),JS.SV.sValueArray(a,r,b,c+"  ",!0,!1,e,h,l),j=",")}a.append(" }");e||a.append("\n")}else{a.append(c).append("{\n");c+="  ";for(m=0;m<k.length;m++)a.append(c),
g=k[m],a.append(g).append("  :"),j=new JU.SB,r=d.get(g),g=JS.SV.isRawType(r.tok),JS.SV.sValueArray(j,r,b,c,g,!1,e,h,l),j=j.toString(),g&&e?a.append("  "):a.append("\n"),a.append(j).append("\n");a.append(c.substring(1)).append("}")}}},"JU.SB,~S,java.util.Map,~S,~B,~B,~N,~B");c$.isRawType=c(c$,"isRawType",function(a){switch(a){case 4:case 3:case 2:case 8:case 9:case 10:case 15:case 1048589:case 1048588:return!0}return!1},"~N");c$.ptValue=c(c$,"ptValue",function(a){switch(a.tok){case 8:return a.value;
case 4:if(a=JU.Escape.uP(a.value),q(a,JU.P3))return a}return null},"JS.SV");c$.pt4Value=c(c$,"pt4Value",function(a){switch(a.tok){case 9:return a.value;case 4:a=JU.Escape.uP(a.value);if(!q(a,JU.P4))break;return a}return null},"JS.SV");c$.toFloat=c(c$,"toFloat",function(a){return a.equalsIgnoreCase("true")?1:0==a.length||a.equalsIgnoreCase("false")?0:JU.PT.parseFloatStrict(a)},"~S");c$.concatList=c(c$,"concatList",function(a,b,d){var c=a.getList(),g=b.getList();if(!d){if(null==g)c.addLast(JS.SV.newT(b));
else for(d=0;d<g.size();d++)c.addLast(g.get(d));return a}var e=new JU.Lst;if(null==c)e.addLast(a);else for(d=0;d<c.size();d++)e.addLast(c.get(d));if(null==g)e.addLast(b);else for(d=0;d<g.size();d++)e.addLast(g.get(d));return JS.SV.getVariableList(e)},"JS.SV,JS.SV,~B");c$.bsSelectToken=c(c$,"bsSelectToken",function(a){a=JS.SV.selectItemTok(a,-2147483648);return a.value},"JS.T");c$.bsSelectVar=c(c$,"bsSelectVar",function(a){2147483647==a.index&&(a=JS.SV.selectItemVar(a));return a.value},"JS.SV");c$.bsSelectRange=
c(c$,"bsSelectRange",function(a,b){a=JS.SV.selectItemTok(a,-2147483648);a=JS.SV.selectItemTok(a,0>=b?b:1);a=JS.SV.selectItemTok(a,0>=b?2147483646:b);return a.value},"JS.T,~N");c$.selectItemVar=c(c$,"selectItemVar",function(a){return 2147483647!=a.index||(7==a.tok||15==a.tok)&&2147483647==a.intValue?a:JS.SV.selectItemTok(a,-2147483648)},"JS.SV");c$.selectItemTok=c(c$,"selectItemTok",function(a,b){switch(a.tok){case 11:case 12:case 10:case 7:case 15:case 4:break;default:return a}var d=null,c=null,g=
a.intValue,e=-2147483648==b;if(2147483647==g)return JS.SV.newSV(a.tok,e?g:b,a.value);var h=0,l=q(a,JS.SV)&&2147483647!=a.index,k=JS.SV.newSV(a.tok,2147483647,null);switch(a.tok){case 10:q(a.value,JM.BondSet)?(d=JM.BondSet.newBS(a.value,a.value.associatedAtoms),h=JU.BSUtil.cardinalityOf(d)):(d=JU.BSUtil.copy(a.value),h=l?1:JU.BSUtil.cardinalityOf(d));break;case 15:h=a.value.data.length;break;case 7:h=a.getList().size();break;case 4:c=a.value;h=c.length;break;case 11:h=-3;break;case 12:h=-4}if(0>h){h=
-h;if(0<g&&Math.abs(g)>h)return k=g%10,g=x((g-k)/10),0<k&&k<=h&&g<=h?JS.SV.newV(3,Float.$valueOf(a.value.getElement(g-1,k-1))):JS.SV.newV(4,"");if(Math.abs(g)>h)return JS.SV.newV(4,"");d=M(h,0);0>g?a.value.getColumn(-1-g,d):a.value.getRow(g-1,d);return e?JS.SV.getVariableAF(d):1>b||b>h?JS.SV.newV(4,""):JS.SV.newV(3,Float.$valueOf(d[b-1]))}0>=g&&(g=h+g);e||(1>g&&(g=1),0==b?b=h:0>b&&(b=h+b),b<g&&(b=g));switch(a.tok){case 10:k.value=d;if(l){1<g&&d.clearAll();break}if(e){g==h?b=d.length()-1:1==g&&(b=
d.nextSetBit(0));if(-1<=b){d.clearAll();0<=b&&d.set(b);break}b=g}h=0;for(e=d.nextSetBit(0);0<=e;e=d.nextSetBit(e+1))(++h<g||h>b)&&d.clear(e);break;case 4:k.value=0>--g||g>=h?"":e?c.substring(g,g+1):c.substring(g,Math.min(b,h));break;case 7:if(0>--g||g>=h)return JS.SV.newV(4,"");if(e)return a.getList().get(g);d=new JU.Lst;e=a.getList();c=Math.min(b,h)-g;for(h=0;h<c;h++)d.addLast(JS.SV.newT(e.get(h+g)));k.value=d;break;case 15:if(0>--g||g>=h)return JS.SV.newV(4,"");d=a.value.data;if(e)return JS.SV.newI(d[g]);
e=Q(Math.min(b,h)-g,0);for(h=e.length;0<=--h;)e[h]=d[g+h];k.value=new JU.BArray(e)}return k},"JS.T,~N");c(c$,"setSelectedValue",function(a,b,d){if(2147483647!=a){var c;switch(this.tok){case 11:case 12:c=11==this.tok?3:4;if(2147483647!=b){var g=a;if(0<b&&b<=c&&g<=c){this.value.setElement(g-1,b-1,JS.SV.fValue(d));break}}if(0!=a&&(Math.abs(a)<=c&&7==d.tok)&&(d=d.getList(),d.size()==c)){g=M(c,0);for(b=0;b<c;b++)g[b]=JS.SV.fValue(d.get(b));0<a?this.value.setRowA(a-1,g):this.value.setColumnA(-1-a,g);break}break;
case 4:c=this.value;g=c.length;0>=a&&(a=g+a);for(0>--a&&(a=0);a>=c.length;)c+=" ";if(2147483647==b)b=a;else for(0>--b&&(b=g+b);b>=c.length;)c+=" ";b>=a&&(this.value=c.substring(0,a)+JS.SV.sValue(d)+c.substring(++b));this.intValue=this.index=2147483647;break;case 7:c=this.getList().size();0>=a&&(a=c+a);0>--a&&(a=0);if(c<=a)for(b=c;b<=a;b++)this.getList().addLast(JS.SV.newV(4,""));this.getList().set(a,d)}}},"~N,~N,JS.SV");c(c$,"escape",function(){switch(this.tok){case 4:return JU.PT.esc(this.value);
case 11:case 12:return JU.PT.toJSON(null,this.value);case 7:case 6:case 14:var a=new JU.SB;JS.SV.sValueArray(a,this,"","",!0,!1,!0,2147483647,!1);return a.toString();default:return JS.SV.sValue(this)}});c$.unescapePointOrBitsetAsVariable=c(c$,"unescapePointOrBitsetAsVariable",function(a){if(null==a)return a;var b=null,d=null;if(q(a,JS.SV))switch(a.tok){case 8:case 9:case 11:case 12:case 10:b=a.value;break;case 4:d=a.value;break;default:d=JS.SV.sValue(a)}else q(a,String)&&(d=a);if(null!=d&&0==d.length)return d;
null==b&&(b=JU.Escape.uABsM(d));return q(b,JU.P3)?JS.SV.newV(8,b):q(b,JU.P4)?JS.SV.newV(9,b):q(b,JU.BS)?(null!=d&&0==d.indexOf("[{")&&(b=JM.BondSet.newBS(b,null)),JS.SV.newV(10,b)):q(b,JU.M34)?JS.SV.newV(q(b,JU.M3)?11:12,b):a},"~O");c$.getBoolean=c(c$,"getBoolean",function(a){return JS.SV.newT(a?JS.SV.vT:JS.SV.vF)},"~B");c$.sprintf=c(c$,"sprintf",function(a,b){if(null==b)return a;var d=0<=a.indexOf("d")||0<=a.indexOf("i")?E(1,0):null,c=7==b.tok,g=0<=a.indexOf("f")?M(1,0):null,e=0<=a.indexOf("e")?
ba(1,0):null,h=0<=a.indexOf("s"),l=0<=a.indexOf("p")&&(c||8==b.tok),k=0<=a.indexOf("q")&&(c||9==b.tok),j=[d,g,e,null,null,null];if(!c)return JS.SV.sprintf(a,b,j,d,g,e,h,l,k);for(var c=b.getList(),m=Array(c.size()),r=0;r<m.length;r++)m[r]=JS.SV.sprintf(a,c.get(r),j,d,g,e,h,l,k);return m},"~S,JS.SV");c$.sprintf=c(c$,"sprintf",function(a,b,d,c,g,e,h,l,k){null!=c&&(c[0]=JS.SV.iValue(b));null!=g&&(g[0]=JS.SV.fValue(b));null!=e&&(e[0]=JS.SV.fValue(b));h&&(d[3]=JS.SV.sValue(b));l&&(d[4]=b.value);k&&(d[5]=
b.value);return JU.PT.sprintf(a,"IFDspq",d)},"~S,JS.SV,~A,~A,~A,~A,~B,~B,~B");c$.getFormatType=c(c$,"getFormatType",function(a){return 0<=a.indexOf(";")?-1:";json;base64;bytearray;array;".indexOf(";"+a.toLowerCase()+";")},"~S");c$.format=c(c$,"format",function(a,b){switch(a.length){case 0:return"";case 1:return JS.SV.sValue(a[0]);case 2:switch(2147483647==b&&(b=JS.SV.getFormatType(a[0].asString())),b){case 0:return a[1].toJSON();case 5:case 12:case 22:var d;switch(a[1].tok){case 15:d=JU.AU.arrayCopyByte(a[1].value.data,
-1);break;case 7:var c=a[1].getList();if(22==b){d=new JU.Lst;for(var g=c.size();0<=--g;)d.addLast(c.get(g));return d}d=Q(c.size(),0);for(g=d.length;0<=--g;)d[g]=c.get(g).asInt();break;default:if(g=a[1].asString(),g.startsWith(";base64,")){if(5==b)return g;d=JU.Base64.decodeBase64(g)}else d=g.getBytes()}return 22==b?JS.SV.getVariable(d):12==b?new JU.BArray(d):";base64,"+JU.Base64.getBase64(d).toString()}}c=new JU.SB;d=JU.PT.split(JU.PT.rep(JS.SV.sValue(a[0]),"%%","\u0001"),"%");c.append(d[0]);for(g=
1;g<d.length;g++){var e=JS.SV.sprintf(JU.PT.formatCheck("%"+d[g]),g<a.length?a[g]:null);if(JU.PT.isAS(e))for(var h=0;h<e.length;h++)c.append(e[h]).append("\n");else c.append(e)}return c.toString()},"~A,~N");c$.getBitSet=c(c$,"getBitSet",function(a,b){switch(a.tok){case 10:return JS.SV.bsSelectVar(a);case 7:for(var d=new JU.BS,c=a.value,g=0;g<c.size();g++)if(!c.get(g).unEscapeBitSetArray(d)&&b)return null;return d}return b?null:new JU.BS},"JS.SV,~B");c$.areEqual=c(c$,"areEqual",function(a,b){if(null==
a||null==b)return!1;if(a.tok==b.tok)switch(a.tok){case 4:return a.value.equalsIgnoreCase(b.value);case 10:case 15:case 6:case 7:case 14:return a.equals(b);case 8:return 1E-6>a.value.distance(b.value);case 9:return 1E-6>a.value.distance4(b.value)}return 1E-6>Math.abs(JS.SV.fValue(a)-JS.SV.fValue(b))},"JS.SV,JS.SV");c$.isLike=c(c$,"isLike",function(a,b){return null!=a&&null!=b&&4==a.tok&&4==b.tok&&JU.PT.isLike(a.value,b.value)},"JS.SV,JS.SV");c(c$,"sortOrReverse",function(a){var b=this.getList();if(null!=
b&&1<b.size())if(-2147483648==a){a=b.size();for(var d=0;d<a;d++){var c=b.get(d);b.set(d,b.get(--a));b.set(a,c)}}else java.util.Collections.sort(this.getList(),T(JS.SV.Sort,this,null,--a));return this},"~N");c(c$,"pushPop",function(a,b){if(null!=b){var d=this.getMap();if(null==a){var c;return null==d||null==(c=d.remove(b.asString()))?JS.SV.newS(""):c}null!=d&&d.put(b.asString(),JS.SV.newI(0).setv(a))}else{d=this.getList();if(null==a||null==d)return null==d||0==d.size()?JS.SV.newS(""):d.remove(d.size()-
1);d.addLast(JS.SV.newI(0).setv(a))}return this},"JS.SV,JS.SV");c(c$,"unEscapeBitSetArray",function(a){switch(this.tok){case 4:var b=JU.BS.unescape(this.value);if(null==b)break;a.or(b);return!0;case 10:return a.or(this.value),!0}return!1},"JU.BS");c$.unEscapeBitSetArray=c(c$,"unEscapeBitSetArray",function(a,b){for(var d=new JU.BS,c=0;c<a.size();c++)if(!a.get(c).unEscapeBitSetArray(d)&&b)return null;return d},"java.util.ArrayList,~B");c$.strListValue=c(c$,"strListValue",function(a){if(7!=a.tok)return[JS.SV.sValue(a)];
a=a.getList();for(var b=Array(a.size()),d=a.size();0<=--d;)b[d]=JS.SV.sValue(a.get(d));return b},"JS.T");c$.flistValue=c(c$,"flistValue",function(a,b){if(7!=a.tok)return[JS.SV.fValue(a)];var d=a.getList(),c;c=M(Math.max(b,d.size()),0);0==b&&(b=c.length);for(var g=Math.min(d.size(),b);0<=--g;)c[g]=JS.SV.fValue(d.get(g));return c},"JS.T,~N");c(c$,"toArray",function(){var a,b=null,d=null;switch(this.tok){case 11:b=this.value;a=3;break;case 12:d=this.value;a=4;break;default:return}this.tok=7;for(var c=
new JU.Lst,g=0;g<a;g++){var e=M(a,0);null==b?d.getRow(g,e):b.getRow(g,e);c.addLast(JS.SV.getVariableAF(e))}this.value=c});c(c$,"mapValue",function(a){switch(this.tok){case 6:return this.value.get(a);case 14:var b=this.value;return a.equals("_path")?JS.SV.newS(b.contextPath):b.getVariable(a)}return null},"~S");c(c$,"getList",function(){return 7==this.tok?this.value:null});c$.isScalar=c(c$,"isScalar",function(a){switch(a.tok){case 7:return!1;case 4:return 0>a.value.indexOf("\n");default:return!0}},
"JS.SV");j(c$,"toJSON",function(){switch(this.tok){case 1048589:case 1048588:case 2:case 3:return JS.SV.sValue(this);case 15:return JU.PT.byteArrayToJSON(this.value.data);case 14:return JU.PT.toJSON(null,this.value.getFullMap());default:return JU.PT.toJSON(null,this.value)}});c(c$,"mapPut",function(a,b){this.getMap().put(a,b)},"~S,JS.SV");c(c$,"mapGet",function(a){return 6==this.tok?this.value.get(a):JS.SV.newS("")},"~S");c(c$,"getMap",function(){switch(this.tok){case 6:return this.value;case 14:return this.value.vars}return null});
j(c$,"toString",function(){return this.toString2()+"["+this.myName+" index ="+this.index+" intValue="+this.intValue+"]"});c(c$,"getMapKeys",function(a,b){if(6!=this.tok)return"";var d=new JU.SB;JS.SV.sValueArray(d,this,"","",!0,!1,!1,a+1,b);return d.toString()},"~N,~B");c$.$SV$Sort$=function(){I(self.c$);c$=s(function(){R(this,arguments);this.arrayPt=0;p(this,arguments)},JS.SV,"Sort",null,java.util.Comparator);t(c$,function(a){this.arrayPt=a},"~N");j(c$,"compare",function(a,b){if(a.tok!=b.tok){if(3==
a.tok||2==a.tok||3==b.tok||2==b.tok){var d=JS.SV.fValue(a),c=JS.SV.fValue(b);return d<c?-1:d>c?1:0}if(4==a.tok||4==b.tok)return JS.SV.sValue(a).compareTo(JS.SV.sValue(b))}switch(a.tok){case 4:return JS.SV.sValue(a).compareTo(JS.SV.sValue(b));case 7:d=a.getList();c=b.getList();if(d.size()!=c.size())return d.size()<c.size()?-1:1;var g=this.arrayPt;0>g&&(g+=d.size());return 0>g||g>=d.size()?0:this.compare(d.get(g),c.get(g));default:return d=JS.SV.fValue(a),c=JS.SV.fValue(b),d<c?-1:d>c?1:0}},"JS.SV,JS.SV");
c$=L()};c$.vT=c$.prototype.vT=JS.SV.newSV(1048589,1,"true");c$.vF=c$.prototype.vF=JS.SV.newSV(1048588,0,"false");C(c$,"FLAG_CANINCREMENT",1,"FLAG_MODIFIED",2);c$.pt0=c$.prototype.pt0=new JU.P3}),u("JS"),v(["java.util.Hashtable"],"JS.T",["java.lang.Boolean","java.util.Arrays","JU.AU","$.Lst","JU.Logger"],function(){c$=s(function(){this.tok=0;this.value=null;this.intValue=2147483647;p(this,arguments)},JS,"T");c$.t=c(c$,"t",function(a){var b=new JS.T;b.tok=a;return b},"~N");c$.tv=c(c$,"tv",function(a,
b,d){a=JS.T.t(a);a.intValue=b;a.value=d;return a},"~N,~N,~O");c$.o=c(c$,"o",function(a,b){var d=JS.T.t(a);d.value=b;return d},"~N,~O");c$.n=c(c$,"n",function(a,b){var d=JS.T.t(a);d.intValue=b;return d},"~N,~N");c$.i=c(c$,"i",function(a){var b=JS.T.t(2);b.intValue=a;return b},"~N");c$.tokAttr=c(c$,"tokAttr",function(a,b){return(a&b)==(b&b)},"~N,~N");c$.tokAttrOr=c(c$,"tokAttrOr",function(a,b,d){return(a&b)==(b&b)||(a&d)==(d&d)},"~N,~N,~N");c$.getPrecedence=c(c$,"getPrecedence",function(a){return a>>
4&15},"~N");c$.getMaxMathParams=c(c$,"getMaxMathParams",function(a){return a>>9&3},"~N");c$.addToken=c(c$,"addToken",function(a,b){JS.T.tokenMap.put(a,b)},"~S,JS.T");c$.getTokenFromName=c(c$,"getTokenFromName",function(a){null==a&&System.out.println("???");return JS.T.tokenMap.get(a)},"~S");c$.getTokFromName=c(c$,"getTokFromName",function(a){a=JS.T.getTokenFromName(a.toLowerCase());return null==a?0:a.tok},"~S");c$.nameOf=c(c$,"nameOf",function(a){for(var b,d=JS.T.tokenMap.values().iterator();d.hasNext()&&
((b=d.next())||1);)if(b.tok==a)return""+b.value;return"0x"+Integer.toHexString(a)},"~N");j(c$,"toString",function(){return this.toString2()});c(c$,"toString2",function(){return"Token["+JS.T.astrType[16>this.tok?this.tok:16]+"("+this.tok%512+"/0x"+Integer.toHexString(this.tok)+")"+(2147483647==this.intValue?"":" intValue="+this.intValue+"(0x"+Integer.toHexString(this.intValue)+")")+(null==this.value?"":q(this.value,String)?' value="'+this.value+'"':" value="+this.value)+"]"});c$.getCommandSet=c(c$,
"getCommandSet",function(a){var b="",d=new java.util.Hashtable,c=0;a=null==a||0==a.length?null:a.toLowerCase();for(var f=null!=a&&1<a.length,e,g=JS.T.tokenMap.entrySet().iterator();g.hasNext()&&((e=g.next())||1);){var h=e.getKey(),l=e.getValue();0!=(l.tok&4096)&&((null==a||0==h.indexOf(a))&&(f||l.value.equals(h)))&&d.put(h,Boolean.TRUE)}for(g=d.entrySet().iterator();g.hasNext()&&((e=g.next())||1);)if(h=e.getKey(),"s"!=h.charAt(h.length-1)||!d.containsKey(h.substring(0,h.length-1)))b+=(0==c++?"":";")+
h;return b},"~S");c$.getAtomPropertiesLike=c(c$,"getAtomPropertiesLike",function(a){a=a.toLowerCase();for(var b=new JU.Lst,d=0==a.length,c,f=JS.T.tokenMap.entrySet().iterator();f.hasNext()&&((c=f.next())||1);){var e=c.getKey();if("_"!=e.charAt(0)){var g=c.getValue();if(JS.T.tokAttr(g.tok,1078984704)&&(d||e.toLowerCase().startsWith(a))){if(d||!g.value.toLowerCase().startsWith(a))g=JS.T.o(g.tok,e);b.addLast(g)}}}return 0==b.size()?null:b},"~S");c$.getTokensLike=c(c$,"getTokensLike",function(a){a=a.equals("setparam")?
536870912:a.equals("misc")?1073741824:a.equals("mathfunc")?135266304:4096;for(var b=536870912==a?1610612736:0,d=new JU.Lst,c,f=JS.T.tokenMap.entrySet().iterator();f.hasNext()&&((c=f.next())||1);){var e=c.getKey(),g=c.getValue();JS.T.tokAttr(g.tok,a)&&(0==b||!JS.T.tokAttr(g.tok,b))&&d.addLast(e)}c=d.toArray(Array(d.size()));java.util.Arrays.sort(c);return c},"~S");c$.getSettableTokFromString=c(c$,"getSettableTokFromString",function(a){a=JS.T.getTokFromName(a);return 0!=a&&JS.T.tokAttr(a,2048)&&!JS.T.tokAttr(a,
1141899264)?a:0},"~S");c$.completeCommand=c(c$,"completeCommand",function(a,b,d,c,f){null==a?a=JS.T.tokenMap:d=!1;var e=new JU.Lst;c=c.toLowerCase();var g;for(a=a.keySet().iterator();a.hasNext()&&((g=a.next())||1);)if(g.startsWith(c)){var h=JS.T.getTokFromName(g);(d?JS.T.tokAttr(h,4096):b?JS.T.tokAttr(h,536870912)&&!JS.T.tokAttr(h,1610612736):1)&&e.addLast(g)}return JU.AU.sortedItem(e,f)},"java.util.Map,~B,~B,~S,~N");c$.getParamType=c(c$,"getParamType",function(a){return!JS.T.tokAttr(a,536870912)?
0:a&662700032},"~N");c$.getTokensType=c(c$,"getTokensType",function(a,b){for(var d,c=JS.T.tokenMap.entrySet().iterator();c.hasNext()&&((d=c.next())||1);){var f=d.getValue();JS.T.tokAttr(f.tok,b)&&a.put(d.getKey(),d.getValue())}},"java.util.Map,~N");c$.isIDcmd=c(c$,"isIDcmd",function(a){switch(a){case 135180:case 135176:case 135174:case 135188:case 135402505:return!0;default:return!1}},"~N");c(c$,"equals",function(a){if(!q(a,JS.T))return!1;if(this.tok==a.tok)return a.intValue==this.intValue&&(2==this.tok||
a.value.equals(this.value));switch(this.tok){case 2:return 3==a.tok&&a.value.floatValue()==this.intValue;case 3:return 2==a.tok&&this.value.floatValue()==a.intValue;default:return!1}},"~O");C(c$,"astrType",null);JS.T.astrType="nada identifier integer decimal string seqcode hash array point point4 bitset matrix3f matrix4f array hash bytearray keyword".$plit(" ");C(c$);c$.tokenSpaceBeforeSquare=c$.prototype.tokenSpaceBeforeSquare=JS.T.o(1073742195," ");c$.tokenOn=c$.prototype.tokenOn=
JS.T.tv(1048589,1,"on");c$.tokenOff=c$.prototype.tokenOff=JS.T.tv(1048588,0,"off");c$.tokenAll=c$.prototype.tokenAll=JS.T.o(1048579,"all");c$.tokenIf=c$.prototype.tokenIf=JS.T.o(135369225,"if");c$.tokenAnd=c$.prototype.tokenAnd=JS.T.o(269484128,"and");c$.tokenAndSpec=c$.prototype.tokenAndSpec=JS.T.o(269484160,"");c$.tokenOr=c$.prototype.tokenOr=JS.T.o(269484112,"or");c$.tokenAndFALSE=c$.prototype.tokenAndFALSE=JS.T.o(269484128,"and");c$.tokenOrTRUE=c$.prototype.tokenOrTRUE=JS.T.o(269484112,"or");
c$.tokenOpIf=c$.prototype.tokenOpIf=JS.T.o(806354977,"?");c$.tokenComma=c$.prototype.tokenComma=JS.T.o(269484080,",");c$.tokenDefineString=c$.prototype.tokenDefineString=JS.T.tv(1060866,4,"@");c$.tokenPlus=c$.prototype.tokenPlus=JS.T.o(269484193,"+");c$.tokenMinus=c$.prototype.tokenMinus=JS.T.o(269484192,"-");c$.tokenMul3=c$.prototype.tokenMul3=JS.T.o(1276117508,"mul3");c$.tokenTimes=c$.prototype.tokenTimes=JS.T.o(269484209,"*");c$.tokenDivide=c$.prototype.tokenDivide=JS.T.o(269484208,"/");c$.tokenLeftParen=
c$.prototype.tokenLeftParen=JS.T.o(269484048,"(");c$.tokenRightParen=c$.prototype.tokenRightParen=JS.T.o(269484049,")");c$.tokenArraySquare=c$.prototype.tokenArraySquare=JS.T.o(135266306,"[");c$.tokenArraySelector=c$.prototype.tokenArraySelector=JS.T.o(269484096,"[");c$.tokenExpressionBegin=c$.prototype.tokenExpressionBegin=JS.T.o(1048577,"expressionBegin");c$.tokenExpressionEnd=c$.prototype.tokenExpressionEnd=JS.T.o(1048578,"expressionEnd");c$.tokenConnected=c$.prototype.tokenConnected=JS.T.o(135266310,
"connected");c$.tokenCoordinateBegin=c$.prototype.tokenCoordinateBegin=JS.T.o(1048586,"{");c$.tokenRightBrace=c$.prototype.tokenRightBrace=JS.T.o(1048590,"}");c$.tokenCoordinateEnd=c$.prototype.tokenCoordinateEnd=JS.T.tokenRightBrace;c$.tokenColon=c$.prototype.tokenColon=JS.T.o(269484066,":");c$.tokenSetCmd=c$.prototype.tokenSetCmd=JS.T.o(1085443,"set");c$.tokenSet=c$.prototype.tokenSet=JS.T.tv(1085443,61,"");c$.tokenSetArray=c$.prototype.tokenSetArray=JS.T.tv(1085443,91,"");c$.tokenSetProperty=c$.prototype.tokenSetProperty=
JS.T.tv(1085443,46,"");c$.tokenSetVar=c$.prototype.tokenSetVar=JS.T.tv(36868,61,"var");c$.tokenEquals=c$.prototype.tokenEquals=JS.T.o(269484436,"=");c$.tokenScript=c$.prototype.tokenScript=JS.T.o(135271429,"script");c$.tokenSwitch=c$.prototype.tokenSwitch=JS.T.o(102410,"switch");c$.tokenMap=c$.prototype.tokenMap=new java.util.Hashtable;for(var a=["(",JS.T.tokenLeftParen,")",JS.T.tokenRightParen,"and",JS.T.tokenAnd,"&",null,"&&",null,"or",JS.T.tokenOr,"|",null,"||",null,"?",JS.T.tokenOpIf,",",JS.T.tokenComma,
"=",JS.T.tokenEquals,"==",null,":",JS.T.tokenColon,"+",JS.T.tokenPlus,"-",JS.T.tokenMinus,"*",JS.T.tokenTimes,"/",JS.T.tokenDivide,"script",JS.T.tokenScript,"source",null,"set",JS.T.tokenSetCmd,"switch",JS.T.tokenSwitch,"all",JS.T.tokenAll,"off",JS.T.tokenOff,"false",null,"on",JS.T.tokenOn,"true",null],b,d=null,f,g,e=a.length-1,h=0;h<e;h+=2)f=a[h],g=f.toLowerCase(),b=a[h+1],null==b?b=d:null==b.value&&(b.value=f),JS.T.tokenMap.put(g,b),d=b;var a=null,a="+= -= *= /= \\= &= |= not ! xor tog < <= >= > != <> LIKE within . .. [ ] { } $ % ; ++ -- ** \\ animation anim assign axes backbone background bind bondorder boundbox boundingBox break calculate capture cartoon cartoons case catch cd center centre centerat cgo color colour compare configuration conformation config connect console contact contacts continue data default define @ delay delete density depth dipole dipoles display dot dots draw echo ellipsoid ellipsoids else elseif end endif exit eval file files font for format frame frames frank function functions geosurface getProperty goto halo halos helix helixalpha helix310 helixpi hbond hbonds help hide history hover if in initialize invertSelected isosurface javascript label labels lcaoCartoon lcaoCartoons load log loop measure measures monitor monitors meshribbon meshribbons message minimize minimization mo model models modulation move moveTo navigate navigation nbo origin out parallel pause wait plot plot3d pmesh polygon polyhedra print process prompt quaternion quaternions quit ramachandran rama refresh reset unset restore restrict return ribbon ribbons rocket rockets rotate rotateSelected save select selectionHalos selectionHalo showSelections sheet show slab spacefill cpk spin ssbond ssbonds star stars step steps stereo strand strands structure _structure strucNo struts strut subset subsystem synchronize sync trace translate translateSelected try unbind unitcell var vector vectors vibration while wireframe write zap zoom zoomTo atom atoms axis axisangle basepair basepairs orientation orientations pdbheader polymer polymers residue residues rotation row sequence shape state symbol symmetry spaceGroup transform translation url abs absolute acos add adpmax adpmin align altloc altlocs ambientOcclusion amino angle array as atomID _atomID _a atomIndex atomName atomno atomType atomX atomY atomZ average babel babel21 back backlit balls baseModel best bin bondCount bottom branch brillouin bzone wignerSeitz cache carbohydrate cell chain chains chainNo chemicalShift cs clash clear clickable clipboard connected context constraint contourLines coord coordinates coords cos cross covalentRadius covalent direction displacement displayed distance div DNA domains dotted DSSP DSSR element elemno _e error exportScale fill find fixedTemperature forcefield formalCharge charge eta front frontlit frontOnly fullylit fx fy fz fxyz fux fuy fuz fuxyz group groups group1 groupID _groupID _g groupIndex hidden highlight hkl hydrophobicity hydrophobic hydro id identify ident image info inline insertion insertions intramolecular intra intermolecular inter bondingRadius ionicRadius ionic isAromatic Jmol JSON join keys last left length lines list magneticShielding ms mass max mep mesh middle min mlp mode modify modifyOrCreate modt modt1 modt2 modt3 modx mody modz modo modxyz molecule molecules modelIndex monomer morph movie mouse mul mul3 nci next noDots noFill noMesh none null inherit normal noContourLines nonequivalent notFrontOnly noTriangles now nucleic occupancy omega only opaque options partialCharge phi plane planar play playRev point points pointGroup polymerLength pop previous prev probe property properties protein psi purine push PyMOL pyrimidine random range rasmol replace resno resume rewind reverse right rmsd RNA rna3d rock rubberband saSurface saved scale scene search smarts selected seqid shapely sidechain sin site size smiles substructure solid sort specialPosition sqrt split starWidth starScale stddev straightness structureId supercell sub sum sum2 surface surfaceDistance symop sx sy sz sxyz temperature relativeTemperature tensor theta thisModel ticks top torsion trajectory trajectories translucent transparent triangles trim type ux uy uz uxyz user valence vanderWaals vdw vdwRadius visible volume vx vy vz vxyz xyz w x y z addHydrogens allConnected angstroms anisotropy append arc area aromatic arrow async auto barb binary blockData cancel cap cavity centroid check chemical circle collapsed col colorScheme command commands contour contours corners count criterion create crossed curve cutoff cylinder diameter discrete distanceFactor downsample drawing dynamicMeasurements eccentricity ed edges energy exitJmol faceCenterOffset filter first fixed fix flat fps from frontEdges full fullPlane functionXY functionXYZ gridPoints homo ignore InChI InChIKey increment insideout interior intersection intersect internal lattice line lineData link lobe lonePair lp lumo manifest mapProperty map maxSet menu minSet modelBased molecular mrc msms name nmr noCross noDebug noEdges noHead noLoad noPlane object obj offset offsetSide once orbital atomicOrbital packed palindrome parameters path pdb period periodic perpendicular perp phase pocket pointsPerAngstrom radical rad reference remove resolution reverseColor rotate45 selection sigma sign silent sphere squared stdInChI stdInChIKey stop title titleFormat to validation value variable variables vertices width backgroundModel celShading celShadingPower debug defaultLattice measurements measurement scale3D toggleLabel userColorScheme throw timeout timeouts animationMode appletProxy atomTypes axesColor axis1Color axis2Color axis3Color backgroundColor bondmode boundBoxColor boundingBoxColor currentLocalPath dataSeparator defaultAngleLabel defaultColorScheme defaultColors defaultDirectory defaultDistanceLabel defaultDropScript defaultLabelPDB defaultLabelXYZ defaultLoadFilter defaultLoadScript defaults defaultTorsionLabel defaultVDW drawFontSize edsUrlCutoff edsUrlFormat edsUrlFormatDiff energyUnits fileCacheDirectory fontsize helpPath hoverLabel language loadFormat loadLigandFormat logFile measurementUnits nmrPredictFormat nmrUrlFormat pathForAllFiles picking pickingStyle pickLabel platformSpeed propertyColorScheme quaternionFrame smilesUrlFormat smiles2dImageFormat unitCellColor axesScale axisScale bondTolerance cameraDepth defaultDrawArrowScale defaultTranslucent dipoleScale ellipsoidAxisDiameter gestureSwipeFactor hbondsAngleMinimum hbondsDistanceMaximum hoverDelay loadAtomDataTolerance minBondDistance minimizationCriterion modulationScale mouseDragFactor mouseWheelFactor navFPS navigationDepth navigationSlab navigationSpeed navX navY navZ particleRadius pointGroupDistanceTolerance pointGroupLinearTolerance radius rotationRadius scaleAngstromsPerInch sheetSmoothing slabRange solventProbeRadius spinFPS spinX spinY spinZ stereoDegrees strutDefaultRadius strutLengthMaximum vectorScale vectorsCentered vectorSymmetry vibrationPeriod vibrationScale visualRange ambientPercent ambient animationFps axesMode bondRadiusMilliAngstroms bondingVersion delayMaximumMs diffusePercent diffuse dotDensity dotScale ellipsoidDotCount helixStep hermiteLevel historyLevel lighting logLevel meshScale minimizationSteps minPixelSelRadius percentVdwAtom perspectiveModel phongExponent pickingSpinRate propertyAtomNumberField propertyAtomNumberColumnCount propertyDataColumnCount propertyDataField repaintWaitMs ribbonAspectRatio scriptReportingLevel showScript smallMoleculeMaxAtoms specular specularExponent specularPercent specPercent specularPower specpower strandCount strandCountForMeshRibbon strandCountForStrands strutSpacing zDepth zSlab zshadePower allowEmbeddedScripts allowGestures allowKeyStrokes allowModelKit allowMoveAtoms allowMultiTouch allowRotateSelected antialiasDisplay antialiasImages antialiasTranslucent appendNew applySymmetryToBonds atomPicking autobond autoFPS axesMolecular axesOrientationRasmol axesUnitCell axesWindow backboneSteps bondModeOr bondPicking bonds bond cartoonBaseEdges cartoonsFancy cartoonFancy cartoonLadders cartoonRibose cartoonRockets chainCaseSensitive colorRasmol debugScript defaultStructureDssp disablePopupMenu displayCellParameters showUnitcellInfo dotsSelectedOnly dotSurface dragSelected drawHover drawPicking dsspCalculateHydrogenAlways ellipsoidArcs ellipsoidArrows ellipsoidAxes ellipsoidBall ellipsoidDots ellipsoidFill fileCaching fontCaching fontScaling forceAutoBond fractionalRelative greyscaleRendering hbondsBackbone hbondsRasmol hbondsSolid hetero hideNameInPopup hideNavigationPoint hideNotSelected highResolution hydrogen hydrogens imageState isKiosk isosurfaceKey isosurfacePropertySmoothing isosurfacePropertySmoothingPower justifyMeasurements languageTranslation leadAtom leadAtoms legacyAutoBonding legacyHAddition legacyJavaFloat logCommands logGestures measureAllModels measurementLabels measurementNumbers messageStyleChime minimizationRefresh minimizationSilent modelkitMode monitorEnergy multipleBondRadiusFactor multipleBondSpacing multiProcessor navigateSurface navigationMode navigationPeriodic partialDots pdbAddHydrogens pdbGetHeader pdbSequential perspectiveDepth preserveState rangeSelected redoMove refreshing ribbonBorder rocketBarrels saveProteinStructureState scriptQueue selectAllModels selectHetero selectHydrogen showAxes showBoundBox showBoundingBox showFrank showHiddenSelectionHalos showHydrogens showKeyStrokes showMeasurements showModulationVectors showMultipleBonds showNavigationPointAlways showTiming showUnitcell showUnitcellDetails slabByAtom slabByMolecule slabEnabled smartAromatic solvent solventProbe ssBondsBackbone statusReporting strutsMultiple syncMouse syncScript testFlag1 testFlag2 testFlag3 testFlag4 traceAlpha twistedSheets undo undoMove useMinimizationThread useNumberLocalization waitForMoveTo windowCentered wireframeRotation zeroBasedXyzRasmol zoomEnabled zoomHeight zoomLarge zShade".split(" "),
l=[269484242,-1,-1,-1,-1,-1,-1,269484144,-1,269484113,269484114,269484435,269484434,269484433,269484432,269484437,-1,269484438,135266325,1048583,1048584,269484096,269484097,1048586,1048590,1048582,269484210,1048591,269484226,269484225,269484227,269484211,4097,-1,4098,1611272194,1115297793,1610616835,4100,4101,1679429641,-1,102407,4102,4103,1113200642,-1,102411,102412,1069064,12289,-1,4105,135174,1766856708,-1,135270405,1095766024,-1,-1,4106,528395,135402505,-1,102408,135270408,102413,1060866,-1,528397,
12291,1073741914,554176526,135175,-1,1610625028,1276117505,1113198595,135176,537022465,1113198596,-1,364547,102402,1150985,364548,266255,135266829,1229984263,-1,4114,135369224,1288701959,4115,-1,1611272202,135368713,-1,1113198597,1276121098,20500,1113200646,-1,137363467,3145735,3145736,3145738,1612189718,-1,20482,12294,1610616855,544771,135369225,1276116993,266264,4121,135180,135287308,1826248716,-1,135182,-1,135271427,36869,528410,1746538509,-1,-1,-1,1113200647,-1,20485,4126,-1,1073877010,1095766030,
-1,1276121113,4128,4130,4131,-1,1073877011,1073742078,1073742079,102436,20487,-1,4133,135190,135188,1073742106,135192,36865,102439,135304707,135270418,-1,266281,1052714,-1,266284,4141,-1,4142,12295,36866,1113200649,-1,1113200650,-1,528432,4145,4146,135280132,1611141171,-1,-1,3145760,135270926,554176565,1113200651,-1,1611141175,1611141176,-1,1113200652,-1,266298,-1,528443,1650071565,-1,1641025539,-1,1095761942,1708058,-1,3158024,1095761943,4156,-1,1113200654,4160,4162,364558,4164,1614417948,36868,
135198,-1,4166,102406,659488,135270422,1060873,4168,4170,1141899265,-1,1073741854,135266307,1073741864,-1,1073742077,-1,1073742088,1095761937,-1,1073742120,-1,1073742132,1276117515,1087373320,1087373323,1073742158,1087375373,1089470478,1073742152,1073742176,1073742178,1074790760,135266826,1073741826,135266819,1276118017,1112539137,1112539138,1073741832,1087373315,-1,553648129,3145730,135266305,135266306,1073741848,1095761922,-1,-1,1095761923,1087375362,1095763969,1087375361,1112541185,1112541186,
1112541187,96,1073741856,1073741858,1073741859,1073741862,1073741860,3145776,1073741863,1276118529,1095761924,1073741871,1048580,1073741872,-1,-1,135270423,3145764,1095761925,1087373316,-1,1095761927,1112539139,-1,1073741881,1073741882,3145766,1073741884,135266310,14,1073741894,1073741898,1048581,-1,-1,135266821,135267329,1112539140,-1,1073741918,1073741922,3145768,1276118018,1276117504,3145732,1073741925,1073741926,1073741915,1073741916,1087375365,1095763978,1095761929,1073741935,570425358,1073741938,
1276118531,1073741946,545259561,1632634891,-1,1112539141,1073741954,1073741958,1073741960,1073741964,1112541188,1112541189,1112541190,1146095627,1112541191,1112541192,1112541193,1146095629,1087373318,-1,1087373319,1095761932,-1,-1,1095761933,3145770,536870920,135267841,1114638362,-1,-1,1074790550,1087373321,-1,1073741979,1073741982,1073741983,1087373322,-1,1073741989,-1,1073741990,-1,1112541194,-1,-1,1048585,1073741991,1073741992,1276118020,1141899282,1073741993,1073741996,1141899267,1141899268,1073742001,
1112539142,-1,1112539143,64,1073742016,1073742018,1073742019,32,1073742022,1073742024,1073742025,1073742026,1112539156,-1,1112539157,1112539158,1112539159,1112539160,1112539161,1112539162,1146093584,1095761936,-1,1095761935,1073742029,1073742030,1073742032,1073742031,1276117507,1276117508,1073742036,1073742037,1073742042,1073742046,1073742052,1048587,-1,-1,1073742056,1073742039,3145778,1073742058,1073742060,135266318,3145742,1129318401,1112539144,1073742072,1073742074,1073742075,1112541195,1112539145,
135266319,-1,1073742096,1073742098,135266320,-1,1073742102,1095761938,1276383249,1073742108,-1,1073742109,1716520985,-1,3145744,1112539146,3145746,1276384259,1073742110,3145748,135267332,1073742114,1073742116,1276120578,1095761939,4143,1073742125,1141899269,1073742126,1073742127,3145750,1073742128,1073742129,1073742134,1073742135,1073742136,1073742138,1073742139,135267335,-1,1114638363,1095761940,1073742144,3145754,135266820,1095761941,1141899270,135267336,1238369286,1073742150,1276117011,3145772,
135266822,1276118021,570425403,-1,192,1112539150,1087373324,1073742163,1276117511,128,160,3145756,1112539151,1297090050,1112539147,1112539148,1112539149,1146095628,1112541196,-1,1276117016,1112539152,3145758,1073742164,1074790748,1073742174,536870926,-1,603979967,-1,1073742182,1276117512,1141899272,1112539153,1112539154,1112539155,1146093582,1073742186,1095763991,1649412120,-1,-1,3145774,1313866249,1112541202,1112541203,1112541204,1146095631,1146095626,1141899281,1112541205,1112541206,1112541207,
1073741828,1073741834,1073741836,1073741837,1073741839,1074790416,1073741842,1076887572,1073741846,1073741849,1073741852,1073741861,1073741866,1073741868,1073741874,1074790451,1073741876,1095761926,1073741878,1073741879,1073741880,1073741886,1276117514,1073741888,1073741890,1073741892,1073741896,1073741900,1073741902,1276117012,1073741905,1073741904,1073741906,1073741908,1073741910,1073741912,1073741917,1073741920,1073741924,1073741928,1073741929,603979835,1073741931,1074790508,1073741933,1073741934,
266256,1073741937,1073741940,1073741942,1060869,-1,1073741948,1074790526,1073741952,1073741956,1073741961,1073741962,1073741966,1073741968,1073741970,1073741973,1073741976,1073741977,1073741978,1073741981,1073741984,1073741986,135267842,-1,1073741988,1073741994,1073741998,1073742E3,1073741999,1073742002,1073742004,1073742006,1073742008,1073742010,1052700,-1,1073742014,1073742015,1073742020,1073742027,1073742028,1073742033,1073742034,1073742035,1073742038,1073742040,1073742041,1073742044,1073742048,
1073742050,1073742054,1073742064,1073742062,1073742066,1073742068,1073742070,1073742076,1073741850,1073742080,1073742082,1073742083,1073742084,1074790662,1073742090,-1,1073742092,-1,1073742094,1073742100,1073742104,1073742112,1073742111,1073742118,1073742119,1073742122,1073742124,1073742130,1073742140,1073742146,1073742147,1073742148,1073742154,1073742156,1073742159,1073742160,1073742162,1073742166,1073742168,1074790746,1073742189,1073742188,1073742190,1073742192,1073742194,1073742196,536870914,603979822,
553648137,536870916,536870918,537006096,-1,1610612740,1610612741,536870930,36870,536875070,-1,545259521,545259522,545259524,545259526,545259528,545259530,545259532,545259534,1610612737,545259536,-1,545259538,545259540,545259542,545259545,-1,545259546,545259547,545259548,545259543,545259544,545259549,545259550,545259552,545259554,545259555,570425356,545259556,545259557,545259558,545259559,545259560,1610612738,545259562,545259563,545259564,545259565,545259566,545259567,545259568,545259569,545259570,
545259571,545259572,545259574,545259576,553648158,545259578,545259580,545259582,545259584,545259586,570425346,-1,570425348,570425350,570425352,570425354,570425355,570425357,570425359,570425360,570425361,570425362,570425363,570425364,570425365,570425366,570425367,570425368,570425371,570425372,570425373,570425374,570425376,570425378,570425380,570425381,570425382,570425384,1666189314,570425388,570425390,570425392,570425393,570425394,570425396,570425398,570425400,570425402,570425404,570425406,570425408,
1649410049,603979972,603979973,570425412,570425414,570425416,553648130,-1,553648132,553648134,553648136,553648138,553648140,553648142,-1,553648143,553648144,553648145,553648146,553648147,553648148,1073741995,553648150,553648151,553648152,553648153,553648154,553648155,553648156,553648157,553648159,553648160,553648162,553648164,553648165,553648166,553648168,536870922,553648170,536870924,553648172,553648174,-1,553648176,-1,553648178,553648180,553648182,553648184,553648186,553648188,553648190,603979778,
603979780,603979781,603979782,603979783,603979784,603979785,603979786,603979788,603979790,603979792,603979794,603979796,603979798,603979800,603979804,603979806,603979808,603979810,603979811,603979812,603979814,1678770178,-1,603979816,603979817,-1,603979818,603979819,603979820,603979823,603979824,603979825,603979826,603979827,603979828,-1,603979829,603979830,603979831,603979832,603979833,603979834,603979836,603979837,603979838,603979839,603979840,603979841,603979842,603979844,603979845,603979846,603979848,
603979850,603979852,603979853,603979854,1613758470,603979858,603979860,603979862,603979864,1613758476,-1,603979867,603979868,603979869,603979870,553648149,603979871,603979872,3145741,-1,603979873,603979874,603979875,603979876,603979877,603979878,603979879,1610612739,603979880,603979881,603979882,603979883,603979884,570425369,570425370,603979885,603979886,603979887,603979888,603979889,603979890,603979891,603979892,603979893,603979894,603979895,4139,603979896,603979898,603979900,603979902,603979904,
603979906,603979908,603979910,603979914,603979916,-1,603979918,603979920,603979922,603979924,603979926,603979927,603979928,603979930,603979934,603979936,603979937,603979939,603979940,603979942,603979944,1613758488,603979948,603979952,603979954,603979955,603979956,603979958,603979960,603979962,603979964,603979965,603979966,603979968,536870928,4165,603979970,603979971,603979974,603979975,603979976,603979978,603979980,603979982,603979983,603979984];a.length!=l.length&&JU.Logger.error("sTokens.length ("+
a.length+") != iTokens.length! ("+l.length+")");e=a.length;for(h=0;h<e;h++)f=a[h],g=f.toLowerCase(),b=l[h],b=d=-1==b?d:JS.T.o(b,f),null!=JS.T.tokenMap.get(g)&&JU.Logger.error("duplicate token definition:"+g),JS.T.tokenMap.put(g,b);l=a=null}),u("J.shape"),v(["J.shape.Shape"],"J.shape.AtomShape","JU.AU $.BS J.atomdata.RadiusData J.c.PAL $.VDW JU.BSUtil $.C".split(" "),function(){c$=s(function(){this.mad=-1;this.paletteIDs=this.colixes=this.mads=null;this.ac=0;this.atoms=null;this.isActive=!1;this.monomerCount=
0;this.rd=this.bsSizeDefault=null;p(this,arguments)},J.shape,"AtomShape",J.shape.Shape);c(c$,"getMonomers",function(){return null});j(c$,"initModelSet",function(){this.atoms=this.ms.at;this.ac=this.ms.ac;null!=this.mads&&(this.mads=JU.AU.arrayCopyShort(this.mads,this.ac));null!=this.colixes&&(this.colixes=JU.AU.arrayCopyShort(this.colixes,this.ac));null!=this.paletteIDs&&(this.paletteIDs=JU.AU.arrayCopyByte(this.paletteIDs,this.ac))});j(c$,"getSize",function(a){return null==this.mads?0:this.mads[a]},
"~N");j(c$,"setSize",function(a,b){this.setSize2(a,b)},"~N,JU.BS");c(c$,"setSize2",function(a,b){0==a?this.setSizeRD(null,b):(null==this.rd?this.rd=new J.atomdata.RadiusData(null,a,J.atomdata.RadiusData.EnumType.SCREEN,null):this.rd.value=a,this.setSizeRD(this.rd,b))},"~N,JU.BS");j(c$,"setSizeRD",function(a,b){if(null!=this.atoms){this.isActive=!0;null==this.bsSizeSet&&(this.bsSizeSet=new JU.BS);var d=null!=a&&0!=a.value,c=null==b,g=c?this.ac-1:b.nextSetBit(0);null==this.mads&&0<=g&&(this.mads=W(this.ac,
0));for(;0<=g;g=c?g-1:b.nextSetBit(g+1))this.setSizeRD2(g,a,d)}},"J.atomdata.RadiusData,JU.BS");c(c$,"setSizeRD2",function(a,b,d){var c=this.atoms[a];this.mads[a]=c.calculateMad(this.vwr,b);this.bsSizeSet.setBitTo(a,d);this.setShapeVisibility(c,d)},"~N,J.atomdata.RadiusData,~B");c(c$,"setPropAS",function(a,b,d){if("color"===a){this.isActive=!0;var c=JU.C.getColixO(b);a=J.c.PAL.pidOf(b);null==this.bsColixSet&&(this.bsColixSet=new JU.BS);for(b=d.nextSetBit(0);0<=b;b=d.nextSetBit(b+1))this.setColixAndPalette(c,
a,b)}else if("params"===a){this.isActive=!0;a=b[0];var g=b[1],e=b[2],h=new J.atomdata.RadiusData(null,0,J.atomdata.RadiusData.EnumType.FACTOR,J.c.VDW.AUTO);null==this.bsColixSet&&(this.bsColixSet=new JU.BS);null==this.bsSizeSet&&(this.bsSizeSet=new JU.BS);b=d.nextSetBit(0);null==this.mads&&0<=b&&(this.mads=W(this.ac,0));for(var l=0;0<=b;b=d.nextSetBit(b+1),l++){c=null==a?0:a[l];0==c&&(c=0);var j=null==g?0:g[l];0.01<j&&(c=JU.C.getColixTranslucent3(c,!0,j));this.setColixAndPalette(c,J.c.PAL.UNKNOWN.id,
b);null!=e&&(c=0<(h.value=e[l]),this.setSizeRD2(b,h,c))}}else if("translucency"===a){this.isActive=!0;a=b.equals("translucent");null==this.bsColixSet&&(this.bsColixSet=new JU.BS);for(b=d.nextSetBit(0);0<=b;b=d.nextSetBit(b+1))null==this.colixes&&(this.colixes=W(this.ac,0),this.paletteIDs=Q(this.ac,0)),this.colixes[b]=JU.C.getColixTranslucent3(this.colixes[b],a,this.translucentLevel),a&&this.bsColixSet.set(b)}else"deleteModelAtoms"===a?(this.atoms=b[1],a=b[2],this.ac=this.ms.ac,b=a[1],a=a[2],this.mads=
JU.AU.deleteElements(this.mads,b,a),this.colixes=JU.AU.deleteElements(this.colixes,b,a),this.paletteIDs=JU.AU.deleteElements(this.paletteIDs,b,a),JU.BSUtil.deleteBits(this.bsSizeSet,d),JU.BSUtil.deleteBits(this.bsColixSet,d)):this.setPropS(a,b,d)},"~S,~O,JU.BS");c(c$,"setColixAndPalette",function(a,b,d){if(null==this.colixes||d>=this.colixes.length){if(0==a)return;this.colixes=JU.AU.ensureLengthShort(this.colixes,d+1);this.paletteIDs=JU.AU.ensureLengthByte(this.paletteIDs,d+1)}null==this.bsColixSet&&
(this.bsColixSet=JU.BS.newN(this.ac));this.colixes[d]=a=this.getColixI(a,b,d);this.bsColixSet.setBitTo(d,0!=a);this.paletteIDs[d]=b},"~N,~N,~N");j(c$,"setAtomClickability",function(){if(this.isActive)for(var a=this.ac;0<=--a;){var b=this.atoms[a];0==(b.shapeVisibilityFlags&this.vf)||this.ms.isAtomHidden(a)||b.setClickable(this.vf)}});j(c$,"getShapeState",function(){return this.isActive?this.vwr.getAtomShapeState(this):""});c(c$,"getInfoAsString",function(){return null},"~N")}),u("J.shape"),v(["J.shape.AtomShape"],
"J.shape.Balls",["JU.BS","J.c.PAL","JU.C"],function(){c$=A(J.shape,"Balls",J.shape.AtomShape);j(c$,"setSize",function(a,b){2147483647==a?(this.isActive=!0,null==this.bsSizeSet&&(this.bsSizeSet=new JU.BS),this.bsSizeSet.or(b)):this.setSize2(a,b)},"~N,JU.BS");j(c$,"setSizeRD",function(a,b){this.isActive=!0;null==this.bsSizeSet&&(this.bsSizeSet=new JU.BS);for(var d=Math.min(this.atoms.length,b.length()),c=b.nextSetBit(0);0<=c&&c<d;c=b.nextSetBit(c+1))this.atoms[c].setMadAtom(this.vwr,a),this.bsSizeSet.set(c)},
"J.atomdata.RadiusData,JU.BS");j(c$,"setProperty",function(a,b,d){if("color"===a){var c=JU.C.getColixO(b);0==c&&(c=2);null==this.bsColixSet&&(this.bsColixSet=new JU.BS);var g=J.c.PAL.pidOf(b);for(a=d.nextSetBit(0);0<=a;a=d.nextSetBit(a+1)){var e=this.atoms[a];e.colixAtom=this.getColixA(c,g,e);this.bsColixSet.setBitTo(a,2!=c||g!=J.c.PAL.NONE.id);e.paletteID=g}}else if("colorValues"===a){if(0!=b.length){null==this.bsColixSet&&(this.bsColixSet=new JU.BS);var h=0,g=null;for(a=d.nextSetBit(0);0<=a&&!(h>=
b.length);a=d.nextSetBit(a+1))g=Integer.$valueOf(b[h++]),c=JU.C.getColixO(g),0==c&&(c=2),g=J.c.PAL.pidOf(g),e=this.atoms[a],e.colixAtom=this.getColixA(c,g,e),this.bsColixSet.setBitTo(a,2!=c||g!=J.c.PAL.NONE.id),e.paletteID=g}}else if("colors"===a){b=b[0];null==this.bsColixSet&&(this.bsColixSet=new JU.BS);for(a=d.nextSetBit(0);0<=a;a=d.nextSetBit(a+1))a>=b.length||(this.atoms[a].colixAtom=b[a],this.atoms[a].paletteID=J.c.PAL.UNKNOWN.id,this.bsColixSet.set(a))}else if("translucency"===a){b=b.equals("translucent");
null==this.bsColixSet&&(this.bsColixSet=new JU.BS);for(a=d.nextSetBit(0);0<=a;a=d.nextSetBit(a+1))this.atoms[a].setTranslucent(b,this.translucentLevel),b&&this.bsColixSet.set(a)}else a.startsWith("ball")&&(a=a.substring(4).intern()),this.setPropAS(a,b,d)},"~S,~O,JU.BS");j(c$,"setAtomClickability",function(){for(var a=this.vwr.slm.bsDeleted,b=this.ac;0<=--b;){var d=this.atoms[b];d.setClickable(0);null!=a&&a.get(b)||(0==(d.shapeVisibilityFlags&this.vf)||this.ms.isAtomHidden(b))||d.setClickable(this.vf)}});
j(c$,"getShapeState",function(){return this.vwr.getShapeState(this)})}),u("J.shape"),v(["J.shape.FontShape"],"J.shape.FontLineShape",null,function(){c$=s(function(){this.tickInfos=null;this.mad=0;p(this,arguments)},J.shape,"FontLineShape",J.shape.FontShape);N(c$,function(){this.tickInfos=Array(4)});c(c$,"setPropFLS",function(a,b){"tickInfo"===a?null==b.ticks?b.type.equals(" ")?this.tickInfos[0]=this.tickInfos[1]=this.tickInfos[2]=this.tickInfos[3]=null:this.tickInfos["xyz".indexOf(b.type)+1]=null:
this.tickInfos["xyz".indexOf(b.type)+1]=b:this.setPropFS(a,b)},"~S,~O");j(c$,"getShapeState",function(){var a=this.vwr.getFontState(this.myType,this.font3d);return null==this.tickInfos?a:this.vwr.getFontLineShapeState(a,this.myType,this.tickInfos)})}),u("J.shape"),v(["J.shape.Shape"],"J.shape.FontShape",null,function(){c$=s(function(){this.font3d=this.myType=null;p(this,arguments)},J.shape,"FontShape",J.shape.Shape);j(c$,"initShape",function(){this.translucentAllowed=!1});c(c$,"setPropFS",function(a,
b){"font"===a&&(this.font3d=b)},"~S,~O")}),u("J.shape"),v(["J.shape.FontShape"],"J.shape.Frank",["J.i18n.GT"],function(){c$=s(function(){this.frankString="Jmol";this.baseFont3d=this.currentMetricsFont3d=null;this.dy=this.dx=this.y=this.x=this.frankDescent=this.frankAscent=this.frankWidth=0;p(this,arguments)},J.shape,"Frank",J.shape.FontShape);c(c$,"initShape",function(){V(this,J.shape.Frank,"initShape",[]);this.myType="frank";this.baseFont3d=this.font3d=this.vwr.gdata.getFont3DFSS("SansSerif","Plain",
16);this.calcMetrics()});j(c$,"setProperty",function(a,b){this.setPropFS(a,b)},"~S,~O,JU.BS");j(c$,"wasClicked",function(a,b){var d=this.vwr.getScreenWidth(),c=this.vwr.getScreenHeight();return 0<d&&0<c&&a>d-this.frankWidth-4&&b>c-this.frankAscent-4},"~N,~N");j(c$,"checkObjectHovered",function(a,b){if(!this.vwr.getShowFrank()||!this.wasClicked(a,b)||!this.vwr.menuEnabled())return!1;this.vwr.gdata.antialiasEnabled&&!this.vwr.isSingleThreaded&&(a<<=1,b<<=1);this.vwr.hoverOnPt(a,b,J.i18n.GT._("Click for menu..."),
null,null);return!0},"~N,~N,JU.BS");c(c$,"calcMetrics",function(){this.vwr.isJS?this.frankString="JSmol":this.vwr.isSignedApplet&&(this.frankString="Jmol_S");this.font3d!==this.currentMetricsFont3d&&(this.currentMetricsFont3d=this.font3d,this.frankWidth=this.font3d.stringWidth(this.frankString),this.frankDescent=this.font3d.getDescent(),this.frankAscent=this.font3d.getAscent())});c(c$,"getFont",function(a){this.font3d=this.vwr.gdata.getFont3DScaled(this.baseFont3d,a);this.calcMetrics()},"~N");j(c$,
"getShapeState",function(){return this.vwr.getFontState(this.myType,this.font3d)});C(c$,"defaultFontName","SansSerif","defaultFontStyle","Plain","defaultFontSize",16,"frankMargin",4)}),u("J.shape"),v(null,"J.shape.Shape",["J.c.PAL","JU.C","$.Logger","JV.JC"],function(){c$=s(function(){this.ms=this.vwr=null;this.translucentLevel=this.vf=this.shapeID=0;this.translucentAllowed=!0;this.isBioShape=!1;this.bsColixSet=this.bsSizeSet=null;p(this,arguments)},J.shape,"Shape");c(c$,"initializeShape",function(a,
b,d){this.vwr=a;this.shapeID=d;this.vf=JV.JC.getShapeVisibilityFlag(d);this.setModelSet(b);this.initShape()},"JV.Viewer,JM.ModelSet,~N");c(c$,"setModelVisibilityFlags",function(){},"JU.BS");c(c$,"getSize",function(){return 0},"~N");c(c$,"getSizeG",function(){return 0},"JM.Group");c(c$,"setModelSet",function(a){this.ms=a;this.initModelSet()},"JM.ModelSet");c(c$,"initModelSet",function(){});c(c$,"setShapeVisibility",function(a,b){a.setShapeVisibility(this.vf,b)},"JM.Atom,~B");c(c$,"initShape",function(){});
c(c$,"merge",function(){},"J.shape.Shape");c(c$,"setShapeSizeRD",function(a,b,d){null==b?this.setSize(a,d):this.setSizeRD(b,d)},"~N,J.atomdata.RadiusData,JU.BS");c(c$,"setSize",function(){},"~N,JU.BS");c(c$,"setSizeRD",function(){},"J.atomdata.RadiusData,JU.BS");c(c$,"getPropertyData",function(){return!1},"~S,~A");c(c$,"setPropS",function(a,b,d){if("setProperties"===a)for(null==d&&(d=this.vwr.bsA());0<b.size();)a=b.remove(0),this.setProperty(a[0].intern(),a[1],d);else"translucentLevel"===a?this.translucentLevel=
b.floatValue():"refreshTrajectories"!==a&&JU.Logger.warn("unassigned "+JV.JC.shapeClassBases[this.shapeID]+" + shape setProperty:"+a+":"+b)},"~S,~O,JU.BS");c(c$,"getProperty",function(){return null},"~S,~N");c(c$,"getIndexFromName",function(){return-1},"~S");c(c$,"wasClicked",function(){return!1},"~N,~N");c(c$,"findNearestAtomIndex",function(){},"~N,~N,~A,JU.BS");c(c$,"checkBoundsMinMax",function(){},"JU.P3,JU.P3");c(c$,"setAtomClickability",function(){});c(c$,"checkObjectClicked",function(){return null},
"~N,~N,~N,JU.BS,~B");c(c$,"checkObjectHovered",function(){return!1},"~N,~N,JU.BS");c(c$,"checkObjectDragged",function(){return!1},"~N,~N,~N,~N,~N,JU.BS");c(c$,"coordinateInRange",function(a,b,d,c,g){this.vwr.tm.transformPtScr(d,g);a=(a-g.x)*(a-g.x)+(b-g.y)*(b-g.y);return a<c?a:-1},"~N,~N,JU.T3,~N,JU.P3i");c(c$,"getColixI",function(a,b,d){return this.getColixA(a,b,this.ms.at[d])},"~N,~N,~N");c(c$,"getColixA",function(a,b,d){return 2==a?this.vwr.cm.getColixAtomPalette(d,b):a},"~N,~N,JM.Atom");c(c$,
"getColixB",function(a,b,d){return 2==a?this.vwr.cm.getColixBondPalette(d,b):a},"~N,~N,JM.Bond");c(c$,"getShapeDetail",function(){return null});c$.getColix=c(c$,"getColix",function(a,b,d){return JU.C.getColixInherited(null==a||b>=a.length?0:a[b],d.colixAtom)},"~A,~N,JM.Atom");c$.getFontCommand=c(c$,"getFontCommand",function(a,b){return null==b?"":"font "+a+" "+b.getInfo()},"~S,javajs.awt.Font");c$.getColorCommandUnk=c(c$,"getColorCommandUnk",function(a,b,d){return J.shape.Shape.getColorCommand(a,
J.c.PAL.UNKNOWN.id,b,d)},"~S,~N,~B");c$.getColorCommand=c(c$,"getColorCommand",function(a,b,d,c){if(b==J.c.PAL.UNKNOWN.id&&0==d)return"";b=b==J.c.PAL.UNKNOWN.id&&0==d?"":(c?J.shape.Shape.getTranslucentLabel(d)+" ":"")+(b!=J.c.PAL.UNKNOWN.id&&!J.c.PAL.isPaletteVariable(b)?J.c.PAL.getPaletteName(b):J.shape.Shape.encodeColor(d));return"color "+a+" "+b},"~S,~N,~N,~B");c$.encodeColor=c(c$,"encodeColor",function(a){return JU.C.isColixColorInherited(a)?"none":JU.C.getHexCode(a)},"~N");c$.getTranslucentLabel=
c(c$,"getTranslucentLabel",function(a){return JU.C.isColixTranslucent(a)?"translucent "+JU.C.getColixTranslucencyFractional(a):"opaque"},"~N");c$.appendCmd=c(c$,"appendCmd",function(a,b){0!=b.length&&a.append("  ").append(b).append(";\n")},"JU.SB,~S");C(c$,"RADIUS_MAX",4)}),u("J.shape"),v(["J.shape.Shape","JU.P3i"],"J.shape.Sticks","java.util.Hashtable JU.BS $.P3 J.c.PAL JU.BSUtil $.C $.Edge $.Escape".split(" "),function(){c$=s(function(){this.myMask=0;this.reportAll=!1;this.ptXY=this.selectedBonds=
this.bsOrderSet=null;p(this,arguments)},J.shape,"Sticks",J.shape.Shape);N(c$,function(){this.ptXY=new JU.P3i});c(c$,"initShape",function(){V(this,J.shape.Sticks,"initShape",[]);this.myMask=1023;this.reportAll=!1});j(c$,"setSize",function(a,b){if(2147483647==a)this.selectedBonds=JU.BSUtil.copy(b);else if(-2147483648==a)null==this.bsOrderSet&&(this.bsOrderSet=new JU.BS),this.bsOrderSet.or(b);else{null==this.bsSizeSet&&(this.bsSizeSet=new JU.BS);for(var d=null!=this.selectedBonds?this.ms.getBondIterator(this.selectedBonds):
this.ms.getBondIteratorForType(this.myMask,b);d.hasNext();)this.bsSizeSet.set(d.nextIndex()),d.next().setMad(a)}},"~N,JU.BS");j(c$,"setProperty",function(a,b,d){if("type"===a)this.myMask=b.intValue();else if("reportAll"===a)this.reportAll=!0;else if("reset"===a)this.selectedBonds=this.bsColixSet=this.bsSizeSet=this.bsOrderSet=null;else if("bondOrder"===a){null==this.bsOrderSet&&(this.bsOrderSet=new JU.BS);a=b.shortValue();for(d=null!=this.selectedBonds?this.ms.getBondIterator(this.selectedBonds):
this.ms.getBondIteratorForType(65535,d);d.hasNext();)this.bsOrderSet.set(d.nextIndex()),d.next().setOrder(a)}else if("color"===a)if(null==this.bsColixSet&&(this.bsColixSet=new JU.BS),a=JU.C.getColixO(b),b=q(b,J.c.PAL)?b:null,b===J.c.PAL.TYPE||b===J.c.PAL.ENERGY){var c=b===J.c.PAL.ENERGY;for(d=null!=this.selectedBonds?this.ms.getBondIterator(this.selectedBonds):this.ms.getBondIteratorForType(this.myMask,d);d.hasNext();){this.bsColixSet.set(d.nextIndex());var g=d.next();g.colix=c?this.getColixB(a,b.id,
g):JU.C.getColix(JU.Edge.getArgbHbondType(g.order))}}else{if(!(2==a&&b!==J.c.PAL.CPK))for(d=null!=this.selectedBonds?this.ms.getBondIterator(this.selectedBonds):this.ms.getBondIteratorForType(this.myMask,d);d.hasNext();)b=d.nextIndex(),d.next().colix=a,this.bsColixSet.setBitTo(b,0!=a&&2!=a)}else if("translucency"===a){null==this.bsColixSet&&(this.bsColixSet=new JU.BS);a=b.equals("translucent");for(d=null!=this.selectedBonds?this.ms.getBondIterator(this.selectedBonds):this.ms.getBondIteratorForType(this.myMask,
d);d.hasNext();)this.bsColixSet.set(d.nextIndex()),d.next().setTranslucent(a,this.translucentLevel)}else"deleteModelAtoms"!==a&&this.setPropS(a,b,d)},"~S,~O,JU.BS");j(c$,"getProperty",function(a){return a.equals("selectionState")?null!=this.selectedBonds?"select BONDS "+JU.Escape.eBS(this.selectedBonds)+"\n":"":a.equals("sets")?[this.bsOrderSet,this.bsSizeSet,this.bsColixSet]:null},"~S,~N");j(c$,"setAtomClickability",function(){for(var a=this.ms.bo,b=this.ms.bondCount;0<=--b;){var d=a[b];0==(d.shapeVisibilityFlags&
this.vf)||(this.ms.isAtomHidden(d.atom1.i)||this.ms.isAtomHidden(d.atom2.i))||(d.atom1.setClickable(this.vf),d.atom2.setClickable(this.vf))}});j(c$,"getShapeState",function(){return this.vwr.getBondState(this,this.bsOrderSet,this.reportAll)});j(c$,"checkObjectHovered",function(a,b,d){var c=new JU.P3;a=this.findPickedBond(a,b,d,c);if(null==a)return!1;this.vwr.highlightBond(a.index,!0);return!0},"~N,~N,JU.BS");j(c$,"checkObjectClicked",function(a,b,d,c){d=new JU.P3;a=this.findPickedBond(a,b,c,d);if(null==
a)return null;b=a.atom1.mi;c=a.getIdentity();var g=new java.util.Hashtable;g.put("pt",d);g.put("index",Integer.$valueOf(a.index));g.put("modelIndex",Integer.$valueOf(b));g.put("model",this.vwr.getModelNumberDotted(b));g.put("type","bond");g.put("info",c);this.vwr.setStatusAtomPicked(-3,'["bond","'+a.getIdentity()+'",'+d.x+","+d.y+","+d.z+"]",g);return g},"~N,~N,~N,JU.BS,~B");c(c$,"findPickedBond",function(a,b,d,c){d=100;this.vwr.gdata.isAntialiased()&&(a<<=1,b<<=1,d<<=1);for(var g=null,e=new JU.P3,
h=this.ms.bo,l=this.ms.bondCount;0<=--l;){var j=h[l];if(0!=j.shapeVisibilityFlags){var n=j.atom1,m=j.atom2;if(n.checkVisible()&&m.checkVisible()){e.ave(n,m);var r=this.coordinateInRange(a,b,e,d,this.ptXY);0<=r&&(n=1*(this.ptXY.x-n.sX)/(m.sX-n.sX),0.4>n||0.6<n||(d=r,g=j,c.setT(e)))}}}return g},"~N,~N,JU.BS,JU.P3");C(c$,"MAX_BOND_CLICK_DISTANCE_SQUARED",100)}),u("J.thread"),v(["J.thread.JmolThread"],"J.thread.HoverWatcherThread",["java.lang.Thread"],function(){c$=s(function(){this.moved=this.current=
this.actionManager=null;this.hoverDelay=0;p(this,arguments)},J.thread,"HoverWatcherThread",J.thread.JmolThread);t(c$,function(a,b,d,c){this.setViewer(c,"HoverWatcher");this.actionManager=a;this.current=b;this.moved=d;this.start()},"JV.ActionManager,JV.MouseState,JV.MouseState,JV.Viewer");j(c$,"run1",function(a){for(;;)switch(a){case -1:this.isJS||Thread.currentThread().setPriority(1);a=0;break;case 0:this.hoverDelay=this.vwr.getHoverDelay();if(this.stopped||0>=this.hoverDelay||!this.runSleep(this.hoverDelay,
1))return;a=1;break;case 1:this.moved.is(this.current)&&(this.currentTime=System.currentTimeMillis(),this.currentTime-this.moved.time>this.hoverDelay&&!this.stopped&&this.actionManager.checkHover()),a=0}},"~N")}),u("J.thread"),v(["java.lang.Thread"],"J.thread.JmolThread",["JU.Logger"],function(){c$=s(function(){this.$name="JmolThread";this.sc=this.eval=this.vwr=null;this.hoverEnabled=this.haveReference=!1;this.sleepTime=this.currentTime=this.lastRepaintTime=this.targetTime=this.startTime=0;this.isReset=
this.stopped=this.isJS=!1;this.useTimeout=!0;this.junk=0;p(this,arguments)},J.thread,"JmolThread",Thread);c(c$,"setManager",function(){return 0},"~O,JV.Viewer,~O");c(c$,"setViewer",function(a,b){this.setName(b);this.$name=b+"_"+ ++J.thread.JmolThread.threadIndex;this.vwr=a;this.isJS=a.isSingleThreaded},"JV.Viewer,~S");c(c$,"setEval",function(a){this.eval=a;this.sc=this.vwr.getEvalContextAndHoldQueue(a);null!=this.sc&&(this.useTimeout=a.getAllowJSThreads())},"J.api.JmolScriptEvaluator");c(c$,"resumeEval",
function(){null==this.eval||(!this.isJS&&!this.vwr.testAsync||!this.useTimeout)||(this.sc.mustResumeEval=!this.stopped,this.eval.resumeEval(this.sc),this.sc=this.eval=null)});c(c$,"start",function(){this.isJS?this.run():V(this,J.thread.JmolThread,"start",[])});j(c$,"run",function(){this.startTime=System.currentTimeMillis();try{this.run1(-1)}catch(a){if(B(a,InterruptedException)){var b=a;JU.Logger.debugging&&!q(this,J.thread.HoverWatcherThread)&&this.oops(b)}else if(B(a,Exception))this.oops(a);else throw a;
}});c(c$,"oops",function(a){JU.Logger.debug(this.$name+" exception "+a);this.vwr.isJS||a.printStackTrace();this.vwr.queueOnHold=!1},"Exception");c(c$,"runSleep",function(a,b){if(this.isJS&&!this.useTimeout)return!0;var d=this;setTimeout(function(){d.run1(b)},Math.max(a,0));return!1},"~N,~N");c(c$,"interrupt",function(){this.stopped=!0;this.vwr.startHoverWatcher(!0);this.isJS||V(this,J.thread.JmolThread,"interrupt",[])});c(c$,"checkInterrupted",function(a){return this.haveReference&&(null==a||!a.$name.equals(this.$name))?
!0:this.stopped},"J.thread.JmolThread");c(c$,"reset",function(){this.isReset=!0;this.interrupt()});C(c$,"threadIndex",0,"INIT",-1,"MAIN",0,"FINISH",-2,"CHECK1",1,"CHECK2",2,"CHECK3",3)}),u("J.thread"),v(["J.thread.JmolThread"],"J.thread.TimeoutThread",["java.lang.Thread","JU.SB"],function(){c$=s(function(){this.script=null;this.status=0;this.triggered=!0;p(this,arguments)},J.thread,"TimeoutThread",J.thread.JmolThread);t(c$,function(a,b,d,c){this.setViewer(a,b);this.$name=b;this.set(d,c)},"JV.Viewer,~S,~N,~S");
c(c$,"set",function(a,b){this.sleepTime=a;null!=b&&(this.script=b)},"~N,~S");j(c$,"toString",function(){return"timeout name="+this.$name+" executions="+this.status+" mSec="+this.sleepTime+" secRemaining="+(this.targetTime-System.currentTimeMillis())/1E3+" script="+this.script});j(c$,"run1",function(a){for(;;)switch(a){case -1:this.isJS||Thread.currentThread().setPriority(1);this.targetTime=System.currentTimeMillis()+Math.abs(this.sleepTime);a=0;break;case 0:if(this.checkInterrupted(null)||(null==
this.script||0==this.script.length)||!this.runSleep(26,1))return;a=1;break;case 1:a=System.currentTimeMillis()<this.targetTime?0:2;break;case 2:this.currentTime=System.currentTimeMillis();if(null==this.vwr.timeouts.get(this.$name))return;this.status++;(a=0>this.sleepTime)?this.targetTime=System.currentTimeMillis()+Math.abs(this.sleepTime):this.vwr.timeouts.remove(this.$name);this.triggered&&(this.triggered=!1,this.$name.equals("_SET_IN_MOTION_")?this.vwr.checkInMotion(2):this.vwr.evalStringQuiet(a?
this.script+';\ntimeout ID "'+this.$name+'";':this.script));a=a?0:-2;break;case -2:this.vwr.timeouts.remove(this.$name);return}},"~N");c$.clear=c(c$,"clear",function(a){for(var b,d=a.values().iterator();d.hasNext()&&((b=d.next())||1);){var c=b;c.script.equals("exitJmol")||c.interrupt()}a.clear()},"java.util.Map");c$.setTimeout=c(c$,"setTimeout",function(a,b,d,c,g){var e=b.get(d);0==c?null!=e&&(e.interrupt(),b.remove(d)):null!=e?e.set(c,g):(e=new J.thread.TimeoutThread(a,d,c,g),b.put(d,e),e.start())},
"JV.Viewer,java.util.Map,~S,~N,~S");c$.trigger=c(c$,"trigger",function(a,b){var d=a.get(b);null!=d&&(d.triggered=0>d.sleepTime)},"java.util.Map,~S");c$.showTimeout=c(c$,"showTimeout",function(a,b){var d=new JU.SB;if(null!=a)for(var c,g=a.values().iterator();g.hasNext()&&((c=g.next())||1);){var e=c;(null==b||e.$name.equalsIgnoreCase(b))&&d.append(e.toString()).append("\n")}return 0<d.length()?d.toString():"<no timeouts set>"},"java.util.Map,~S")}),u("JM"),v(["JU.BNode","$.Point3fi","J.c.PAL"],"JM.Atom",
"java.lang.Float JU.BS $.CU $.P3 $.PT $.SB J.atomdata.RadiusData J.c.VDW JM.Group JU.C $.Elements".split(" "),function(){c$=s(function(){this.altloc="\x00";this.atomSite=this.atomID=0;this.group=null;this.atomicAndIsotopeNumber=this.valence=this.userDefinedVanDerWaalRadius=0;this.atomSymmetry=null;this.paletteID=this.colixAtom=this.madAtom=this.formalChargeAndFlags=0;this.bonds=null;this.shapeVisibilityFlags=this.clickabilityFlags=this.nBackbonesDisplayed=this.nBondsDisplayed=0;p(this,arguments)},
JM,"Atom",JU.Point3fi,JU.BNode);N(c$,function(){this.paletteID=J.c.PAL.CPK.id});j(c$,"setAtom",function(a,b,d,c,g,e,h,l,j){this.mi=a;this.atomSymmetry=g;this.atomSite=e;this.i=b;this.atomicAndIsotopeNumber=h;j&&(this.formalChargeAndFlags=2);0!=l&&-2147483648!=l&&this.setFormalCharge(l);this.userDefinedVanDerWaalRadius=c;this.setT(d);return this},"~N,~N,JU.P3,~N,JU.BS,~N,~N,~N,~B");c(c$,"setShapeVisibility",function(a,b){this.shapeVisibilityFlags=b?this.shapeVisibilityFlags|a:this.shapeVisibilityFlags&
~a},"~N,~B");c(c$,"isCovalentlyBonded",function(a){if(null!=this.bonds)for(var b=this.bonds.length;0<=--b;)if(this.bonds[b].isCovalent()&&this.bonds[b].getOtherAtom(this)===a)return!0;return!1},"JM.Atom");c(c$,"isBonded",function(a){if(null!=this.bonds)for(var b=this.bonds.length;0<=--b;)if(this.bonds[b].getOtherAtom(this)===a)return!0;return!1},"JM.Atom");c(c$,"getBond",function(a){if(null!=this.bonds)for(var b=this.bonds.length;0<=--b;)if(null!=this.bonds[b].getOtherAtom(a))return this.bonds[b];
return null},"JM.Atom");c(c$,"addDisplayedBond",function(a,b){this.nBondsDisplayed+=b?1:-1;this.setShapeVisibility(a,0<this.nBondsDisplayed)},"~N,~B");c(c$,"addDisplayedBackbone",function(a,b){this.nBackbonesDisplayed+=b?1:-1;this.setShapeVisibility(a,b)},"~N,~B");c(c$,"deleteBond",function(a){if(null!=this.bonds)for(var b=this.bonds.length;0<=--b;)if(this.bonds[b]===a){this.deleteBondAt(b);break}},"JM.Bond");c(c$,"deleteBondAt",function(a){var b=this.bonds.length-1;if(0==b)this.bonds=null;else{for(var d=
Array(b),c=0;c<a;++c)d[c]=this.bonds[c];for(;c<b;++c)d[c]=this.bonds[c+1];this.bonds=d}},"~N");j(c$,"getBondedAtomIndex",function(a){return this.bonds[a].getOtherAtom(this).i},"~N");c(c$,"setMadAtom",function(a,b){this.madAtom=this.calculateMad(a,b)},"JV.Viewer,J.atomdata.RadiusData");c(c$,"calculateMad",function(a,b){if(null==b)return 0;var d=b.value;if(0==d)return 0;switch(b.factorType){case J.atomdata.RadiusData.EnumType.SCREEN:return $(d);case J.atomdata.RadiusData.EnumType.FACTOR:case J.atomdata.RadiusData.EnumType.OFFSET:var c=
0;switch(b.vdwType){case J.c.VDW.TEMP:c=a.ms.getBfactor100Hi();c=0<c?this.getBfactor100()/c:0;break;case J.c.VDW.HYDRO:c=Math.abs(this.getHydrophobicity());break;case J.c.VDW.BONDING:c=this.getBondingRadius();break;case J.c.VDW.ADPMIN:case J.c.VDW.ADPMAX:c=this.getADPMinMax(b.vdwType===J.c.VDW.ADPMAX);break;default:c=this.getVanderwaalsRadiusFloat(a,b.vdwType)}d=b.factorType===J.atomdata.RadiusData.EnumType.FACTOR?d*c:d+c;break;case J.atomdata.RadiusData.EnumType.ABSOLUTE:if(16.1==d)return JM.Atom.MAD_GLOBAL}c=
$(0>d?d:2E3*d);0>c&&0<d&&(c=0);return c},"JV.Viewer,J.atomdata.RadiusData");c(c$,"getADPMinMax",function(a){var b=this.getTensors();if(null==b)return 0;var d=b[0];if(null==d||1!=d.iType)return 0;this.group.chain.model.ms.isModulated(this.i)&&d.isUnmodulated&&(d=b[1]);return d.getFactoredValue(a?2:1)},"~B");c(c$,"getTensors",function(){return this.group.chain.model.ms.getAtomTensorList(this.i)});c(c$,"getRasMolRadius",function(){return Math.abs(x(this.madAtom/8))});j(c$,"getCovalentBondCount",function(){if(null==
this.bonds)return 0;for(var a=0,b,d=this.bonds.length;0<=--d;)0!=((b=this.bonds[d]).order&1023)&&!b.getOtherAtom(this).isDeleted()&&++a;return a});j(c$,"getCovalentHydrogenCount",function(){if(null==this.bonds)return 0;for(var a=0,b=this.bonds.length;0<=--b;)if(0!=(this.bonds[b].order&1023)){var d=this.bonds[b].getOtherAtom(this);0<=d.valence&&1==d.getElementNumber()&&++a}return a});j(c$,"getEdges",function(){return null==this.bonds?[]:this.bonds});c(c$,"setTranslucent",function(a,b){this.colixAtom=
JU.C.getColixTranslucent3(this.colixAtom,a,b)},"~B,~N");c(c$,"isTranslucent",function(){return JU.C.isColixTranslucent(this.colixAtom)});j(c$,"getElementNumber",function(){return JU.Elements.getElementNumber(this.atomicAndIsotopeNumber)});j(c$,"getIsotopeNumber",function(){return JU.Elements.getIsotopeNumber(this.atomicAndIsotopeNumber)});j(c$,"getAtomicAndIsotopeNumber",function(){return this.atomicAndIsotopeNumber});c(c$,"setAtomicAndIsotopeNumber",function(a){if(0>a||(a&127)>=JU.Elements.elementNumberMax||
32767<a)a=0;this.atomicAndIsotopeNumber=a},"~N");c(c$,"getElementSymbolIso",function(a){return JU.Elements.elementSymbolFromNumber(a?this.atomicAndIsotopeNumber:this.atomicAndIsotopeNumber&127)},"~B");c(c$,"getElementSymbol",function(){return this.getElementSymbolIso(!0)});c(c$,"isAltLoc",function(a){if(null==a)return"\x00"==this.altloc;if(1!=a.length)return!1;a=a.charAt(0);return"*"==a||"?"==a&&"\x00"!=this.altloc||this.altloc==a},"~S");c(c$,"isHetero",function(){return 0!=(this.formalChargeAndFlags&
2)});c(c$,"hasVibration",function(){return 0!=(this.formalChargeAndFlags&1)});c(c$,"setFormalCharge",function(a){this.formalChargeAndFlags=this.formalChargeAndFlags&3|(-2147483648==a?0:7<a?7:-3>a?-3:a)<<2},"~N");c(c$,"setVibrationVector",function(){this.formalChargeAndFlags|=1});j(c$,"getFormalCharge",function(){return this.formalChargeAndFlags>>2});c(c$,"getOccupancy100",function(){var a=this.group.chain.model.ms.occupancies;return null==a?100:Math.round(a[this.i])});c(c$,"getBfactor100",function(){var a=
this.group.chain.model.ms.bfactor100s;return null==a?0:a[this.i]});c(c$,"getHydrophobicity",function(){var a=this.group.chain.model.ms.hydrophobicities;return null==a?JU.Elements.getHydrophobicity(this.group.groupID):a[this.i]});c(c$,"setRadius",function(a){return!Float.isNaN(this.userDefinedVanDerWaalRadius=0<a?a:NaN)},"~N");c(c$,"deleteBonds",function(a){this.valence=-1;if(null!=this.bonds)for(var b=this.bonds.length;0<=--b;){var d=this.bonds[b];d.getOtherAtom(this).deleteBond(d);a.set(d.index)}this.bonds=
null},"JU.BS");j(c$,"isDeleted",function(){return 0>this.valence});c(c$,"setValence",function(a){this.isDeleted()||(this.valence=0>a?0:239>a?a:239)},"~N");j(c$,"getValence",function(){if(this.isDeleted())return-1;var a=this.valence;if(0==a&&null!=this.bonds)for(var b=this.bonds.length;0<=--b;)a+=this.bonds[b].getValence();return a});j(c$,"getImplicitHydrogenCount",function(){return this.group.chain.model.ms.getImplicitHydrogenCount(this,!1)});c(c$,"getTargetValence",function(){switch(this.getElementNumber()){case 6:case 14:return 4;
case 5:case 7:case 15:return 3;case 8:case 16:return 2;case 1:case 9:case 17:case 35:case 53:return 1}return-1});c(c$,"getDimensionValue",function(a){return 0==a?this.x:1==a?this.y:this.z},"~N");c(c$,"getVanderwaalsRadiusFloat",function(a,b){return Float.isNaN(this.userDefinedVanDerWaalRadius)?a.getVanderwaalsMarType(this.atomicAndIsotopeNumber,this.getVdwType(b))/1E3:this.userDefinedVanDerWaalRadius},"JV.Viewer,J.c.VDW");c(c$,"getVdwType",function(a){switch(a){case J.c.VDW.AUTO:a=this.group.chain.model.ms.getDefaultVdwType(this.mi);
break;case J.c.VDW.NOJMOL:a=this.group.chain.model.ms.getDefaultVdwType(this.mi),a===J.c.VDW.AUTO_JMOL&&(a=J.c.VDW.AUTO_BABEL)}return a},"J.c.VDW");c(c$,"getBondingRadius",function(){var a=this.group.chain.model.ms.bondingRadii,a=null==a?0:a[this.i];return 0==a?JU.Elements.getBondingRadius(this.atomicAndIsotopeNumber,this.getFormalCharge()):a});c(c$,"getVolume",function(a,b){var d=null==b?this.userDefinedVanDerWaalRadius:NaN;Float.isNaN(d)&&(d=a.getVanderwaalsMarType(this.getElementNumber(),this.getVdwType(b))/
1E3);var c=0;if(null!=this.bonds)for(var g=0;g<this.bonds.length;g++)if(this.bonds[g].isCovalent()){var e=this.bonds[g].getOtherAtom(this),h=null==b?e.userDefinedVanDerWaalRadius:NaN;Float.isNaN(h)&&(h=a.getVanderwaalsMarType(e.getElementNumber(),e.getVdwType(b))/1E3);e=this.distance(e);if(!(e>d+h)){if(e+d<=h)return 0;h=d-(d*d+e*e-h*h)/(2*e);c-=1.0471975511965976*h*h*(3*d-h)}}return c+4.1887902047863905*d*d*d},"JV.Viewer,J.c.VDW");c(c$,"getCurrentBondCount",function(){return null==this.bonds?0:this.bonds.length});
c(c$,"getRadius",function(){return Math.abs(this.madAtom/2E3)});j(c$,"getIndex",function(){return this.i});j(c$,"getAtomSite",function(){return this.atomSite});c(c$,"setGroup",function(a){this.group=a},"JM.Group");j(c$,"getGroupBits",function(a){this.group.selectAtoms(a)},"JU.BS");j(c$,"getAtomName",function(){return 0<this.atomID?JM.Group.specialAtomNames[this.atomID]:this.group.chain.model.ms.atomNames[this.i]});j(c$,"getAtomType",function(){var a=this.group.chain.model.ms.atomTypes,a=null==a?null:
a[this.i];return null==a?this.getAtomName():a});c(c$,"getAtomNumber",function(){var a=this.group.chain.model.ms.atomSerials;return null==a?this.i:a[this.i]});c(c$,"getSeqID",function(){var a=this.group.chain.model.ms.atomSeqIDs;return null==a?0:a[this.i]});c(c$,"isVisible",function(a){return(this.shapeVisibilityFlags&a)==a},"~N");c(c$,"getPartialCharge",function(){var a=this.group.chain.model.ms.partialCharges;return null==a?0:a[this.i]});c(c$,"getSymmetryTranslation",function(a,b,d){for(var c=0;c<
b.length;c++)if(this.atomSymmetry.get(a+=d))return b[c];return 0},"~N,~A,~N");c(c$,"getCellTranslation",function(a,b,d){for(var c=d,g=0;g<b.length;g++)for(var e=0;e<d;e++,c++)if(this.atomSymmetry.get(c)&&b[g]==a)return b[g];return 0},"~N,~A,~N");c(c$,"getSymmetryOperatorList",function(a){var b="",d=this.group.chain.model.ms,c=d.getModelSymmetryCount(this.mi);if(0==c||null==this.atomSymmetry)return"";for(var d=d.getModelCellRange(this.mi),g=c,e=null==d?1:d.length,h=a?null:new JU.BS,l=0;l<e;l++)for(var j=
0;j<c;j++)this.atomSymmetry.get(g++)&&(a?b+=","+(j+1)+d[l]:h.set(j+1));if(!a)for(l=h.nextSetBit(0);0<=l;l=h.nextSetBit(l+1))b+=","+l;return 0==b.length?"":b.substring(1)},"~B");j(c$,"getModelIndex",function(){return this.mi});c(c$,"getMoleculeNumber",function(a){return this.group.chain.model.ms.getMoleculeIndex(this.i,a)+1},"~B");c(c$,"getFractionalCoord",function(a,b,d,c){c=this.getFractionalCoordPt(a,d,c);return"X"==b?c.x:"Y"==b?c.y:c.z},"~B,~S,~B,JU.P3");c(c$,"getFractionalCoordPt",function(a,
b,d){var c=this.getUnitCell();if(null==c)return this;null==d?d=JU.P3.newP(this):d.setT(this);c.toFractional(d,b);a&&JU.PT.fixPtFloats(d,1E5);return d},"~B,~B,JU.P3");c(c$,"getUnitCell",function(){return this.group.chain.model.ms.getUnitCellForAtom(this.i)});c(c$,"getFractionalUnitCoord",function(a,b,d){d=this.getFractionalUnitCoordPt(a,!1,d);return"X"==b?d.x:"Y"==b?d.y:d.z},"~B,~S,JU.P3");c(c$,"getFractionalUnitCoordPt",function(a,b,d){var c=this.getUnitCell();if(null==c)return this;null==d?d=JU.P3.newP(this):
d.setT(this);this.group.chain.model.isJmolDataFrame?(c.toFractional(d,!1),b&&c.toCartesian(d,!1)):(c.toUnitCell(d,null),b||c.toFractional(d,!1));a&&JU.PT.fixPtFloats(d,b?1E4:1E5);return d},"~B,~B,JU.P3");c(c$,"getFractionalUnitDistance",function(a,b,d){var c=this.getUnitCell();if(null==c)return this.distance(a);b.setT(this);d.setT(a);this.group.chain.model.isJmolDataFrame?(c.toFractional(b,!0),c.toFractional(d,!0)):(c.toUnitCell(b,null),c.toUnitCell(d,null));return b.distance(d)},"JU.P3,JU.P3,JU.P3");
c(c$,"setFractionalCoord",function(a,b,d){var c=this.getUnitCell();null!=c&&c.toFractional(this,d);switch(a){case 1112541191:case 1112541188:this.x=b;break;case 1112541192:case 1112541189:this.y=b;break;case 1112541193:case 1112541190:this.z=b}null!=c&&c.toCartesian(this,d)},"~N,~N,~B");c(c$,"setFractionalCoordTo",function(a,b){this.setFractionalCoordPt(this,a,b)},"JU.P3,~B");c(c$,"setFractionalCoordPt",function(a,b,d){a.setT(b);b=this.getUnitCell();null!=b&&b.toCartesian(a,d&&!this.group.chain.model.isJmolDataFrame)},
"JU.P3,JU.P3,~B");c(c$,"isCursorOnTopOf",function(a,b,d,c){var g=x(this.sD/2);g<d&&(g=d);d=g*g;g=this.sX-a;g*=g;if(g>d)return!1;var e=this.sY-b;d-=g+e*e;if(0>d)return!1;if(null==c)return!0;var g=this.sZ,e=c.sZ,h=x(c.sD/2);if(g<e-h)return!0;a=c.sX-a;b=c.sY-b;b=h*h-(a*a+b*b);return g-Math.sqrt(d)<e-Math.sqrt(b)},"~N,~N,~N,JM.Atom");c(c$,"getInfo",function(){return this.getIdentity(!0)});c(c$,"getInfoXYZ",function(a,b,d){if(b){b=this.getGroup3(!0);var c=this.getChainID();d=this.getFractionalCoordPt(a,
!0,d);return"Atom: "+(null==b?this.getElementSymbol():this.getAtomName())+" "+this.getAtomNumber()+(null!=b&&0<b.length?(this.isHetero()?" Hetero: ":" Group: ")+b+" "+this.getResno()+(0!=c&&32!=c?" Chain: "+this.group.chain.getIDStr():""):"")+" Model: "+this.getModelNumber()+" Coordinates: "+this.x+" "+this.y+" "+this.z+(null==d?"":" Fractional: "+d.x+" "+d.y+" "+d.z)}return this.getIdentityXYZ(!0,d)},"~B,~B,JU.P3");c(c$,"getIdentityXYZ",function(a,b){b=this.group.chain.model.isJmolDataFrame?this.getFractionalCoordPt(!this.group.chain.model.ms.vwr.g.legacyJavaFloat,
!1,b):this;return this.getIdentity(a)+" "+b.x+" "+b.y+" "+b.z},"~B,JU.P3");c(c$,"getIdentity",function(a){var b=new JU.SB,d=this.getGroup3(!0);if(null!=d&&0<d.length&&!d.equals("UNK")){b.append("[");b.append(d);b.append("]");d=this.getSeqcodeString();null!=d&&b.append(d);d=this.getChainID();if(0!=d&&32!=d){b.append(":");var c=this.getChainIDStr();256<=d&&(c=JU.PT.esc(c));b.append(c)}if(!a)return b.toString();b.append(".")}b.append(this.getAtomName());0==b.length()&&(b.append(this.getElementSymbolIso(!1)),
b.append(" "),b.appendI(this.getAtomNumber()));0!=this.altloc.charCodeAt(0)&&(b.append("%"),b.appendC(this.altloc));1<this.group.chain.model.ms.mc&&!this.group.chain.model.isJmolDataFrame&&(b.append("/"),b.append(this.getModelNumberForLabel()));b.append(" #");b.appendI(this.getAtomNumber());return b.toString()},"~B");j(c$,"getGroup3",function(a){var b=this.group.getGroup3();return a||null!=b&&0<b.length?b:"UNK"},"~B");j(c$,"getGroup1",function(a){var b=this.group.getGroup1();return"\x00"!=b?""+b:
"\x00"!=a?""+a:""},"~S");j(c$,"isProtein",function(){return this.group.isProtein()});c(c$,"isCarbohydrate",function(){return this.group.isCarbohydrate()});j(c$,"isNucleic",function(){return this.group.isNucleic()});j(c$,"isDna",function(){return this.group.isDna()});j(c$,"isRna",function(){return this.group.isRna()});j(c$,"isPurine",function(){return this.group.isPurine()});j(c$,"isPyrimidine",function(){return this.group.isPyrimidine()});c(c$,"getSeqcode",function(){return this.group.seqcode});j(c$,
"getResno",function(){return this.group.getResno()});c(c$,"isClickable",function(){return this.checkVisible()&&0!=this.clickabilityFlags&&0!=((this.shapeVisibilityFlags|this.group.shapeVisibilityFlags)&this.clickabilityFlags)});c(c$,"setClickable",function(a){0==a?this.clickabilityFlags=0:(this.clickabilityFlags|=a,1040384!=a&&(this.shapeVisibilityFlags|=a))},"~N");c(c$,"checkVisible",function(){if(this.isVisible(2))return this.isVisible(4);var a=this.isVisible(9);if(a){a=this.shapeVisibilityFlags;
if(0!=this.group.shapeVisibilityFlags&&(8192!=this.group.shapeVisibilityFlags||this.isLeadAtom()))a|=this.group.shapeVisibilityFlags;a&=-10;32==a&&0==this.clickabilityFlags&&(a=0);if(a=0!=a)this.shapeVisibilityFlags|=4}this.shapeVisibilityFlags|=2;return a});j(c$,"isLeadAtom",function(){return this.group.isLeadAtom(this.i)});c(c$,"getGroupParameter",function(a){return this.group.getGroupParameter(a)},"~N");j(c$,"getChainID",function(){return this.group.chain.chainID});j(c$,"getChainIDStr",function(){return this.group.chain.getIDStr()});
c(c$,"getSurfaceDistance100",function(){return this.group.chain.model.ms.getSurfaceDistance100(this.i)});c(c$,"getVibrationVector",function(){return this.group.chain.model.ms.getVibration(this.i,!1)});c(c$,"getModulation",function(){return this.group.chain.model.ms.getModulation(this.i)});c(c$,"getVibrationCoord",function(a){return this.group.chain.model.ms.getVibrationCoord(this.i,a)},"~S");c(c$,"getModulationCoord",function(a){return this.group.chain.model.ms.getModulationCoord(this.i,a)},"~S");
c(c$,"getPolymerLength",function(){return this.group.getBioPolymerLength()});c(c$,"getPolymerIndexInModel",function(){return this.group.getBioPolymerIndexInModel()});c(c$,"getMonomerIndex",function(){return this.group.getMonomerIndex()});c(c$,"getSelectedGroupCountWithinChain",function(){return this.group.chain.selectedGroupCount});c(c$,"getSelectedGroupIndexWithinChain",function(){return this.group.getSelectedGroupIndex()});c(c$,"getSelectedMonomerCountWithinPolymer",function(){return this.group.getSelectedMonomerCount()});
c(c$,"getSelectedMonomerIndexWithinPolymer",function(){return this.group.getSelectedMonomerIndex()});c(c$,"getChain",function(){return this.group.chain});c(c$,"getModelNumberForLabel",function(){return this.group.chain.model.ms.getModelNumberForAtomLabel(this.mi)});c(c$,"getModelNumber",function(){return this.group.chain.model.ms.getModelNumber(this.mi)%1E6});j(c$,"getBioStructureTypeName",function(){return this.getProteinStructureType().getBioStructureTypeName(!0)});c(c$,"getProteinStructureType",
function(){return this.group.getProteinStructureType()});c(c$,"getProteinStructureSubType",function(){return this.group.getProteinStructureSubType()});c(c$,"getStrucNo",function(){return this.group.getStrucNo()});c(c$,"getStructureId",function(){return this.group.getStructureId()});c(c$,"getProteinStructureTag",function(){return this.group.getProteinStructureTag()});c(c$,"getGroupID",function(){return this.group.groupID});c(c$,"getSeqcodeString",function(){return this.group.getSeqcodeString()});c(c$,
"getInsertionCode",function(){return this.group.getInsertionCode()});j(c$,"equals",function(a){return this===a},"~O");j(c$,"hashCode",function(){return this.i});c(c$,"findAromaticNeighbor",function(a){if(null==this.bonds)return null;for(var b=this.bonds.length;0<=--b;){var d=this.bonds[b],c=d.getOtherAtom(this);if(d.isAromatic()&&c.i!=a)return c}return null},"~N");c(c$,"atomPropertyInt",function(a){switch(a){case 1095763969:return this.getAtomNumber();case 1095761940:return this.getSeqID();case 1095761922:return this.atomID;
case 1095761943:return Math.max(0,this.altloc.charCodeAt(0)-32);case 1095761923:return this.i;case 1095761924:return this.getCovalentBondCount();case 1095761927:return this.group.chain.index+1;case 1766856708:return this.group.chain.model.ms.vwr.gdata.getColorArgbOrGray(this.colixAtom);case 1087375365:case 1095763978:return this.getElementNumber();case 1095761929:return this.atomicAndIsotopeNumber;case 1229984263:return this.group.chain.model.fileIndex+1;case 1632634891:return this.getFormalCharge();
case 1095761932:return this.getGroupID();case 1095761933:return this.group.groupIndex;case 1095766030:return this.getModelNumber();case -1095766030:return this.group.chain.model.ms.modelFileNumbers[this.mi];case 1095761935:return this.mi;case 1095761936:return this.getMoleculeNumber(!0);case 1129318401:return this.getOccupancy100();case 1095761937:return this.group.getBioPolymerIndexInModel()+1;case 1095761938:return this.getPolymerLength();case 1666189314:return this.getRasMolRadius();case 1095761939:return this.getResno();
case 1095761941:return this.getAtomSite();case 1641025539:return this.getProteinStructureType().getId();case 1238369286:return this.getProteinStructureSubType().getId();case 1095761942:return this.getStrucNo();case 1297090050:return this.getSymOp();case 1095763991:return this.getValence()}return 0},"~N");c(c$,"getSymOp",function(){return null==this.atomSymmetry?0:this.atomSymmetry.nextSetBit(0)+1});c(c$,"atomPropertyFloat",function(a,b,d){switch(b){case 1112539137:return this.getADPMinMax(!0);case 1112539138:return this.getADPMinMax(!1);
case 1112541185:case 1112541205:return this.x;case 1112541186:case 1112541206:return this.y;case 1112541187:case 1112541207:return this.z;case 1115297793:case 1113200642:case 1113198595:case 1113198596:case 1113198597:case 1113200646:case 1113200647:case 1113200649:case 1113200650:case 1113200652:case 1650071565:case 1113200654:return a.shm.getAtomShapeValue(b,this.group,this.i);case 1112541194:return this.getBondingRadius();case 1112539139:return a.getNMRCalculation().getChemicalShift(this);case 1112539140:return JU.Elements.getCovalentRadius(this.atomicAndIsotopeNumber);
case 1112539141:case 1112539152:case 1112539150:return this.getGroupParameter(b);case 1112541188:return this.getFractionalCoord(!a.g.legacyJavaFloat,"X",!0,d);case 1112541189:return this.getFractionalCoord(!a.g.legacyJavaFloat,"Y",!0,d);case 1112541190:return this.getFractionalCoord(!a.g.legacyJavaFloat,"Z",!0,d);case 1112541191:return this.getFractionalCoord(!a.g.legacyJavaFloat,"X",!1,d);case 1112541192:return this.getFractionalCoord(!a.g.legacyJavaFloat,"Y",!1,d);case 1112541193:return this.getFractionalCoord(!a.g.legacyJavaFloat,
"Z",!1,d);case 1114638362:return this.getHydrophobicity();case 1112539142:return a.getNMRCalculation().getMagneticShielding(this);case 1112539143:return this.getMass();case 1129318401:return this.getOccupancy100()/100;case 1112541195:return this.getPartialCharge();case 1112539145:case 1112539146:case 1112539144:if(this.group.chain.model.isJmolDataFrame&&this.group.chain.model.jmolFrameType.startsWith("plot ramachandran"))switch(b){case 1112539145:return this.getFractionalCoord(!a.g.legacyJavaFloat,
"X",!1,d);case 1112539146:return this.getFractionalCoord(!a.g.legacyJavaFloat,"Y",!1,d);case 1112539144:if(this.group.chain.model.isJmolDataFrame&&this.group.chain.model.jmolFrameType.equals("plot ramachandran"))return a=this.getFractionalCoord(!a.g.legacyJavaFloat,"Z",!1,d)-180,-180>a?360+a:a}return this.getGroupParameter(b);case 1666189314:case 1113200651:return this.getRadius();case 1112539147:return this.sX;case 1112539148:return this.group.chain.model.ms.vwr.getScreenHeight()-this.sY;case 1112539149:return this.sZ;
case 1114638363:return a.slm.isAtomSelected(this.i)?1:0;case 1112539151:return this.group.chain.model.ms.getSurfaceDistanceMax(),this.getSurfaceDistance100()/100;case 1112541196:return this.getBfactor100()/100;case 1112539153:return this.getFractionalUnitCoord(!a.g.legacyJavaFloat,"X",d);case 1112539154:return this.getFractionalUnitCoord(!a.g.legacyJavaFloat,"Y",d);case 1112539155:return this.getFractionalUnitCoord(!a.g.legacyJavaFloat,"Z",d);case 1649412120:return this.getVanderwaalsRadiusFloat(a,
J.c.VDW.AUTO);case 1649410049:return b=this.getVibrationVector(),null==b?0:b.length()*a.getFloat(1649410049);case 1112541202:return this.getVibrationCoord("X");case 1112541203:return this.getVibrationCoord("Y");case 1112541204:return this.getVibrationCoord("Z");case 1112539159:return this.getModulationCoord("X");case 1112539156:return this.getModulationCoord("1");case 1112539157:return this.getModulationCoord("2");case 1112539158:return this.getModulationCoord("3");case 1112539160:return this.getModulationCoord("Y");
case 1112539161:return this.getModulationCoord("Z");case 1112539162:return this.getModulationCoord("O");case 1313866249:return this.getVolume(a,J.c.VDW.AUTO);case 1146095627:case 1146095629:case 1146093582:case 1146095628:case 1146095631:case 1146093584:case 1146095626:return a=this.atomPropertyTuple(a,b,d),null==a?-1:a.length()}return this.atomPropertyInt(b)},"JV.Viewer,~N,JU.P3");c(c$,"getMass",function(){var a=this.getIsotopeNumber();return 0<a?a:JU.Elements.getAtomicMass(this.getElementNumber())});
c(c$,"atomPropertyString",function(a,b){var d;switch(b){case 1087373315:return d=this.altloc,"\x00"==d?"":""+d;case 1087375362:return this.getAtomName();case 1087375361:return this.getAtomType();case 1087373316:return this.getChainIDStr();case 1087373320:return this.getGroup1("?");case 1087373319:return this.getGroup1("\x00");case 1087373318:return this.getGroup3(!1);case 1087375365:return this.getElementSymbolIso(!0);case 1087373321:return this.getIdentity(!0);case 1087373322:return d=this.getInsertionCode(),
"\x00"==d?"":""+d;case 1826248716:case 1288701959:return d=a.shm.getShapePropertyIndex(5,"label",this.i),null==d&&(d=""),d;case 1641025539:return this.getProteinStructureType().getBioStructureTypeName(!1);case 1238369286:return this.getProteinStructureSubType().getBioStructureTypeName(!1);case 1087373324:return this.getStructureId();case 1087373323:return a.getHybridizationAndAxes(this.i,null,null,"d");case 1087375373:return this.getElementSymbolIso(!1);case 1089470478:return this.getSymmetryOperatorList(!0)}return""},
"JV.Viewer,~N");c(c$,"atomPropertyTuple",function(a,b,d){switch(b){case 1146095627:return this.getFractionalCoordPt(!a.g.legacyJavaFloat,!this.group.chain.model.isJmolDataFrame,d);case 1146095629:return this.getFractionalCoordPt(!a.g.legacyJavaFloat,!1,d);case 1146093582:return this.group.chain.model.isJmolDataFrame?this.getFractionalCoordPt(!a.g.legacyJavaFloat,!1,d):this.getFractionalUnitCoordPt(!a.g.legacyJavaFloat,!1,d);case 1146095628:return JU.P3.new3(this.sX,this.group.chain.model.ms.vwr.getScreenHeight()-
this.sY,this.sZ);case 1146095631:return this.getVibrationVector();case 1146093584:return a=this.getModulation(),null==a?null:a.getV3();case 1146095626:return this;case 1766856708:return JU.CU.colorPtFromInt(this.group.chain.model.ms.vwr.gdata.getColorArgbOrGray(this.colixAtom),d)}return null},"JV.Viewer,~N,JU.P3");c(c$,"isWithinStructure",function(a){return this.group.isWithinStructure(a)},"J.c.STR");j(c$,"getOffsetResidueAtom",function(a,b){return this.group.getAtomIndex(a,b)},"~S,~N");j(c$,"isCrossLinked",
function(a){return this.group.isCrossLinked(a.group)},"JU.BNode");j(c$,"getCrossLinkLeadAtomIndexes",function(a){return this.group.getCrossLinkLead(a)},"JU.Lst");j(c$,"toString",function(){return this.getInfo()});j(c$,"findAtomsLike",function(a){return this.group.chain.model.ms.vwr.getAtomBitSet(a)},"~S");C(c$,"VIBRATION_VECTOR_FLAG",1,"IS_HETERO_FLAG",2,"FLAG_MASK",3,"RADIUS_MAX",16,"RADIUS_GLOBAL",16.1,"MAD_GLOBAL",32200)}),u("JM"),v(["JU.V3"],"JM.AtomCollection","java.lang.Character $.Float java.util.Arrays $.Hashtable JU.A4 $.AU $.BS $.Lst $.M3 $.Measure $.P3 $.PT J.api.Interface $.JmolModulationSet J.atomdata.RadiusData J.c.PAL $.STR $.VDW JM.Group JS.T JU.BSUtil $.Elements $.Escape $.Logger $.Parser $.Vibration".split(" "),
function(){c$=s(function(){this.at=this.g3d=this.vwr=null;this.ac=0;this.labeler=this.surfaceDistance100s=this.atomTensors=this.atomTensorList=this.hydrophobicities=this.bondingRadii=this.partialCharges=this.bfactor100s=this.occupancies=this.vibrations=this.atomSeqIDs=this.atomSerials=this.atomTypes=this.atomNames=null;this.maxVanderwaalsRadius=this.maxBondingRadius=1.4E-45;this.hasBfactorRange=!1;this.bfactor100Hi=this.bfactor100Lo=0;this.bsSurface=null;this.surfaceDistanceMax=this.nSurfaceAtoms=
0;this.bspf=this.averageAtomPoint=null;this.canSkipLoad=this.preserveState=!0;this.haveStraightness=!1;this.bsModulated=this.bsClickable=this.bsVisible=this.bsHidden=this.tainted=null;this.haveBSClickable=this.haveBSVisible=!1;this.aaRet=null;S("JM.AtomCollection.AtomSorter")||JM.AtomCollection.$AtomCollection$AtomSorter$();p(this,arguments)},JM,"AtomCollection");c(c$,"setupAC",function(){this.bsHidden=new JU.BS;this.bsVisible=new JU.BS;this.bsClickable=new JU.BS;null==JM.AtomCollection.userSettableValues&&
(JM.AtomCollection.userSettableValues="atomName atomType coord element formalCharge hydrophobicity ionic occupancy partialCharge temperature valence vanderWaals vibrationVector atomNo seqID".$plit(" "))});c(c$,"releaseModelSet",function(){this.releaseModelSetAC()});c(c$,"releaseModelSetAC",function(){this.atomTensors=this.bondingRadii=this.partialCharges=this.bfactor100s=this.occupancies=this.vibrations=this.atomSeqIDs=this.atomSerials=this.atomTypes=this.atomNames=this.tainted=this.bsSurface=this.surfaceDistance100s=
this.bspf=this.g3d=this.vwr=this.at=null});c(c$,"mergeAtomArrays",function(a){this.tainted=a.tainted;this.atomNames=a.atomNames;this.atomTypes=a.atomTypes;this.atomSerials=a.atomSerials;this.atomSeqIDs=a.atomSeqIDs;this.vibrations=a.vibrations;this.occupancies=a.occupancies;this.bfactor100s=a.bfactor100s;this.bondingRadii=a.bondingRadii;this.partialCharges=a.partialCharges;this.atomTensors=a.atomTensors;this.atomTensorList=a.atomTensorList;this.bsModulated=a.bsModulated;this.haveStraightness=!1;this.surfaceDistance100s=
null},"JM.AtomCollection");c(c$,"getAtomPointVector",function(a){var b=new JU.Lst;if(null!=a)for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1))b.addLast(this.at[d]);return b},"JU.BS");c(c$,"modelSetHasVibrationVectors",function(){return null!=this.vibrations});c(c$,"getAtomTypes",function(){return this.atomTypes});c(c$,"getPartialCharges",function(){return this.partialCharges});c(c$,"getBondingRadii",function(){return this.bondingRadii});c(c$,"getBFactors",function(){return this.bfactor100s});c(c$,
"getHydrophobicity",function(){return this.hydrophobicities});c(c$,"setBsHidden",function(a){this.bsHidden=a},"JU.BS");c(c$,"isAtomHidden",function(a){return this.bsHidden.get(a)},"~N");c(c$,"getLabeler",function(){return null==this.labeler?this.labeler=J.api.Interface.getInterface("JM.LabelToken",this.vwr,"ms"):this.labeler});c(c$,"getAtomInfo",function(a,b,d){return null==b?this.at[a].getInfo():this.getLabeler().formatLabel(this.vwr,this.at[a],b,d)},"~N,~S,JU.P3");c(c$,"getElementName",function(a){return JU.Elements.elementNameFromNumber(this.at[a].getAtomicAndIsotopeNumber())},
"~N");c(c$,"getQuaternion",function(a,b){return 0>a?null:this.at[a].group.getQuaternion(b)},"~N,~S");c(c$,"getAtomIndexFromAtomNumber",function(a,b){for(var d=0;d<this.ac;d++){var c=this.at[d];if(c.getAtomNumber()==a&&b.get(c.mi))return d}return-1},"~N,JU.BS");c(c$,"setFormalCharges",function(a,b){if(null!=a)for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1))this.at[d].setFormalCharge(b),this.taintAtom(d,4)},"JU.BS,~N");c(c$,"getAtomicCharges",function(){for(var a=M(this.ac,0),b=this.ac;0<=--b;)a[b]=
this.at[b].getElementNumber();return a});c(c$,"getRadiusVdwJmol",function(a){return JU.Elements.getVanderwaalsMar(a.getElementNumber(),J.c.VDW.JMOL)/1E3},"JM.Atom");c(c$,"getMaxVanderwaalsRadius",function(){1.4E-45==this.maxVanderwaalsRadius&&this.findMaxRadii();return this.maxVanderwaalsRadius});c(c$,"findMaxRadii",function(){for(var a,b=this.ac;0<=--b;){var d=this.at[b];if((a=d.getBondingRadius())>this.maxBondingRadius)this.maxBondingRadius=a;if((a=d.getVanderwaalsRadiusFloat(this.vwr,J.c.VDW.AUTO))>
this.maxVanderwaalsRadius)this.maxVanderwaalsRadius=a}});c(c$,"clearBfactorRange",function(){this.hasBfactorRange=!1});c(c$,"calcBfactorRange",function(a){if(!this.hasBfactorRange){this.bfactor100Lo=2147483647;this.bfactor100Hi=-2147483648;if(null==a)for(var b=0;b<this.ac;b++)this.setBf(b);else for(b=a.nextSetBit(0);0<=b;b=a.nextSetBit(b+1))this.setBf(b);this.hasBfactorRange=!0}},"JU.BS");c(c$,"setBf",function(a){a=this.at[a].getBfactor100();a<this.bfactor100Lo?this.bfactor100Lo=a:a>this.bfactor100Hi&&
(this.bfactor100Hi=a)},"~N");c(c$,"getBfactor100Lo",function(){this.hasBfactorRange||(this.vwr.g.rangeSelected?this.calcBfactorRange(this.vwr.bsA()):this.calcBfactorRange(null));return this.bfactor100Lo});c(c$,"getBfactor100Hi",function(){this.getBfactor100Lo();return this.bfactor100Hi});c(c$,"getSurfaceDistanceMax",function(){null==this.surfaceDistance100s&&this.calcSurfaceDistances();return this.surfaceDistanceMax});c(c$,"calculateVolume",function(a,b){var d=0;if(null!=a)for(var c=a.nextSetBit(0);0<=
c;c=a.nextSetBit(c+1))d+=this.at[c].getVolume(this.vwr,b);return d},"JU.BS,J.c.VDW");c(c$,"getSurfaceDistance100",function(a){if(0==this.nSurfaceAtoms)return-1;null==this.surfaceDistance100s&&this.calcSurfaceDistances();return this.surfaceDistance100s[a]},"~N");c(c$,"calcSurfaceDistances",function(){this.calculateSurface(null,-1)});c(c$,"calculateSurface",function(a,b){0>b&&(b=3);var d=J.api.Interface.getOption("geodesic.EnvelopeCalculation",this.vwr,"ms").set(this.vwr,this.ac,null);d.calculate(new J.atomdata.RadiusData(null,
b,J.atomdata.RadiusData.EnumType.ABSOLUTE,null),3.4028235E38,a,JU.BSUtil.copyInvert(a,this.ac),!1,!1,!1,!0);var c=d.getPoints();this.surfaceDistanceMax=0;this.bsSurface=d.getBsSurfaceClone();this.surfaceDistance100s=E(this.ac,0);this.nSurfaceAtoms=JU.BSUtil.cardinalityOf(this.bsSurface);if(0==this.nSurfaceAtoms||null==c||0==c.length)return c;for(var d=3.4028235E38==b?0:b,g=0;g<this.ac;g++)if(this.bsSurface.get(g))this.surfaceDistance100s[g]=0;else{for(var e=3.4028235E38,h=this.at[g],l=c.length;0<=
--l;){var j=Math.abs(c[l].distance(h)-d);0>j&&JU.Logger.debugging&&JU.Logger.debug("draw d"+l+" "+JU.Escape.eP(c[l])+' "'+j+" ? "+h.getInfo()+'"');e=Math.min(j,e)}j=this.surfaceDistance100s[g]=x(Math.floor(100*e));this.surfaceDistanceMax=Math.max(this.surfaceDistanceMax,j)}return c},"JU.BS,~N");c(c$,"setAtomCoord2",function(a,b,d){var c=null,g=null,e=null,h=0,l=1;if(q(d,JU.P3))c=d;else if(q(d,JU.Lst)){e=d;if(0==(l=e.size()))return;h=1}else if(JU.PT.isAP(d)){g=d;if(0==(l=g.length))return;h=2}else return;
d=0;if(null!=a)for(var j=a.nextSetBit(0);0<=j;j=a.nextSetBit(j+1)){switch(h){case 1:if(d>=l)return;c=e.get(d++);break;case 2:if(d>=l)return;c=g[d++]}if(null!=c)switch(b){case 1146095626:this.setAtomCoord(j,c.x,c.y,c.z);break;case 1146095627:this.at[j].setFractionalCoordTo(c,!0);this.taintAtom(j,2);break;case 1146095629:this.at[j].setFractionalCoordTo(c,!1);this.taintAtom(j,2);break;case 1146095631:this.setAtomVibrationVector(j,c)}}},"JU.BS,~N,~O");c(c$,"setAtomVibrationVector",function(a,b){this.setVibrationVector(a,
b);this.taintAtom(a,12)},"~N,JU.T3");c(c$,"setAtomCoord",function(a,b,d,c){if(!(0>a||a>=this.ac)){var g=this.at[a];g.set(b,d,c);this.fixTrajectory(g);this.taintAtom(a,2)}},"~N,~N,~N,~N");c(c$,"fixTrajectory",function(a){var b=a.mi;if(this.isTrajectory(b)){var d=null!=this.unitCells&&this.unitCells[b].getCoordinatesAreFractional(),c=this.trajectorySteps.get(b)[a.i-this.am[b].firstAtomIndex];c.set(a.x,a.y,a.z);d&&this.unitCells[b].toFractional(c,!0)}},"JM.Atom");c(c$,"setAtomCoordRelative",function(a,
b,d,c){if(!(0>a||a>=this.ac)){var g=this.at[a];g.add3(b,d,c);this.fixTrajectory(g);this.taintAtom(a,2)}},"~N,~N,~N,~N");c(c$,"setAtomsCoordRelative",function(a,b,d,c){if(null!=a)for(var g=a.nextSetBit(0);0<=g;g=a.nextSetBit(g+1))this.setAtomCoordRelative(g,b,d,c)},"JU.BS,~N,~N,~N");c(c$,"setAPa",function(a,b,d,c,g,e,h){var l=0;if(!(null!=e&&0==e.length||null==a)){for(var j=null!=e&&e.length==this.ac||null!=h&&h.length==this.ac,n=a.nextSetBit(0);0<=n;n=a.nextSetBit(n+1)){j&&(l=n);if(null!=e){if(l>=
e.length)return;c=e[l++];if(Float.isNaN(c))continue;d=z(c)}else if(null!=h){if(l>=h.length)return;g=h[l++]}var m=this.at[n];switch(b){case 1087375362:this.taintAtom(n,0);this.setAtomName(n,g);break;case 1095763969:this.taintAtom(n,13);this.setAtomNumber(n,d);break;case 1095761940:this.taintAtom(n,14);this.setAtomSeqID(n,d);break;case 1087375361:this.taintAtom(n,1);this.setAtomType(n,g);break;case 1112541185:case 1112541205:this.setAtomCoord(n,c,m.y,m.z);break;case 1112541186:case 1112541206:this.setAtomCoord(n,
m.x,c,m.z);break;case 1112541187:case 1112541207:this.setAtomCoord(n,m.x,m.y,c);break;case 1112541202:case 1112541203:case 1112541204:this.setVibrationVector2(n,b,c);break;case 1112541188:case 1112541189:case 1112541190:m.setFractionalCoord(b,c,!0);this.taintAtom(n,2);break;case 1112541191:case 1112541192:case 1112541193:m.setFractionalCoord(b,c,!1);this.taintAtom(n,2);break;case 1095763978:case 1087375365:this.setElement(m,d);break;case 1632634891:m.setFormalCharge(d);this.taintAtom(n,4);break;case 1114638362:this.setHydrophobicity(n,
c)&&this.taintAtom(n,5);break;case 1826248716:case 1288701959:this.vwr.shm.setAtomLabel(g,n);break;case 1129318401:2>c&&0.01<c&&(c*=100);this.setOccupancy(n,c)&&this.taintAtom(n,7);break;case 1112541195:this.setPartialCharge(n,c)&&this.taintAtom(n,8);break;case 1112541194:this.setBondingRadius(n,c)&&this.taintAtom(n,6);break;case 1666189314:case 1113200651:0>c?c=0:16<c&&(c=16.1);m.madAtom=$(2E3*c);break;case 1114638363:this.vwr.slm.setSelectedAtom(m.i,0!=c);break;case 1112541196:this.setBFactor(n,
c)&&this.taintAtom(n,9);break;case 1095763991:m.setValence(d);this.taintAtom(n,10);break;case 1649412120:m.setRadius(c)?this.taintAtom(n,11):this.untaint(n,11);break;default:JU.Logger.error("unsettable atom property: "+JS.T.nameOf(b))}}switch(b){case 1114638363:this.vwr.slm.setSelectedAtom(-1,!1);break;case 1666189314:case 1113200651:this.vwr.setShapeSize(0,2147483647,a)}}},"JU.BS,~N,~N,~N,~S,~A,~A");c(c$,"setElement",function(a,b){this.taintAtom(a.i,3);a.setAtomicAndIsotopeNumber(b);a.paletteID=
J.c.PAL.CPK.id;a.colixAtom=this.vwr.cm.getColixAtomPalette(a,J.c.PAL.CPK.id)},"JM.Atom,~N");c(c$,"getVibrationCoord",function(a,b){var d=this.getVibration(a,!1);if(null==d)return NaN;switch(b){case "X":return d.x;case "Y":return d.y;default:return d.z}},"~N,~S");c(c$,"getModulationCoord",function(a,b){var d=this.getModulation(a);if(null!=d){var c=d.getVibration(!1);null==c&&(c=d);switch(b){case "X":return c.x;case "Y":return c.y;case "Z":return c.z;case "O":return d.getModulation("O",null).floatValue();
case "1":case "2":case "3":return d=d.getModulation("T",null),d="1"==b?d.x:"2"==b?d.y:d.z,d-Math.floor(d)}}return NaN},"~N,~S");c(c$,"getVibration",function(a,b){var d=null==this.vibrations?null:this.vibrations[a];return q(d,J.api.JmolModulationSet)?d.getVibration(b):null==d&&b?new JU.Vibration:d},"~N,~B");c(c$,"getModulation",function(a){a=null==this.vibrations?null:this.vibrations[a];return null!=a&&0<a.modDim?a:null},"~N");c(c$,"setVibrationVector",function(a,b){if(!Float.isNaN(b.x)&&!Float.isNaN(b.y)&&
!Float.isNaN(b.z)){if(null==this.vibrations||this.vibrations.length<a)this.vibrations=Array(this.at.length);q(b,JU.Vibration)?this.vibrations[a]=b:(null==this.vibrations[a]&&(this.vibrations[a]=new JU.Vibration),this.vibrations[a].setXYZ(b));this.at[a].setVibrationVector()}},"~N,JU.T3");c(c$,"setVibrationVector2",function(a,b,d){var c=this.getVibration(a,!0);if(null!=c){switch(b){case 1112541202:c.x=d;break;case 1112541203:c.y=d;break;case 1112541204:c.z=d}this.setAtomVibrationVector(a,c)}},"~N,~N,~N");
c(c$,"setAtomName",function(a,b){var d=this.am[this.at[a].mi].isBioModel?this.vwr.getJBR().lookupSpecialAtomID(b):0;this.at[a].atomID=d;0<d||(null==this.atomNames&&(this.atomNames=Array(this.at.length)),this.atomNames[a]=b)},"~N,~S");c(c$,"setAtomType",function(a,b){null==this.atomTypes&&(this.atomTypes=Array(this.at.length));this.atomTypes[a]=b},"~N,~S");c(c$,"setAtomNumber",function(a,b){null==this.atomSerials&&(this.atomSerials=E(this.at.length,0));this.atomSerials[a]=b;return!0},"~N,~N");c(c$,
"setAtomSeqID",function(a,b){null==this.atomSeqIDs&&(this.atomSeqIDs=E(this.at.length,0));this.atomSeqIDs[a]=b;return!0},"~N,~N");c(c$,"setOccupancy",function(a,b){if(null==this.occupancies){if(100==b)return!1;this.occupancies=M(this.at.length,0);for(var d=this.at.length;0<=--d;)this.occupancies[d]=100}this.occupancies[a]=b;return!0},"~N,~N");c(c$,"setPartialCharge",function(a,b){if(Float.isNaN(b))return!1;if(null==this.partialCharges){if(0==b)return!1;this.partialCharges=M(this.at.length,0)}this.partialCharges[a]=
b;return!0},"~N,~N");c(c$,"setBondingRadius",function(a,b){if(Float.isNaN(b))return!1;null==this.bondingRadii&&(this.bondingRadii=M(this.at.length,0));this.bondingRadii[a]=b;return!0},"~N,~N");c(c$,"setBFactor",function(a,b){if(Float.isNaN(b))return!1;if(null==this.bfactor100s){if(0==b&&null==this.bfactor100s)return!1;this.bfactor100s=W(this.at.length,0)}this.bfactor100s[a]=ma(100*(-327.68>b?-327.68:327.67<b?327.67:b)+(0>b?-0.5:0.5));return!0},"~N,~N");c(c$,"setHydrophobicity",function(a,b){if(Float.isNaN(b))return!1;
if(null==this.hydrophobicities){this.hydrophobicities=M(this.at.length,0);for(var d=0;d<this.at.length;d++)this.hydrophobicities[d]=JU.Elements.getHydrophobicity(this.at[d].getGroupID())}this.hydrophobicities[a]=b;return!0},"~N,~N");c(c$,"setAtomData",function(a,b,d,c){var g=null,e=null;switch(a){case 2:this.loadCoordinates(d,!1,!c);return;case 12:this.loadCoordinates(d,!0,!0);return;case 15:g=M(this.ac,0),e=JU.BS.newN(this.ac)}c=JU.Parser.markLines(d,";");var h=0;try{for(var l=JU.PT.parseInt(d.substring(0,
c[0]-1)),j=1;j<=l;j++){var n=JU.PT.getTokens(JU.PT.parseTrimmed(d.substring(c[j],c[j+1]-1))),m=JU.PT.parseInt(n[0])-1;if(!(0>m||m>=this.ac)){var r=this.at[m];h++;var y=n.length-1,w=JU.PT.parseFloat(n[y]);switch(a){case 15:g[m]=w;e.set(m);continue;case 13:this.setAtomNumber(m,z(w));break;case 14:this.setAtomSeqID(m,z(w));break;case 0:this.setAtomName(m,n[y]);break;case 1:this.setAtomType(m,n[y]);break;case 3:r.setAtomicAndIsotopeNumber(z(w));r.paletteID=J.c.PAL.CPK.id;r.colixAtom=this.vwr.cm.getColixAtomPalette(r,
J.c.PAL.CPK.id);break;case 4:r.setFormalCharge(z(w));break;case 5:this.setHydrophobicity(m,w);break;case 6:this.setBondingRadius(m,w);break;case 8:this.setPartialCharge(m,w);break;case 9:this.setBFactor(m,w);break;case 10:r.setValence(z(w));break;case 11:r.setRadius(w)}this.taintAtom(m,a)}}15==a&&0<h&&this.vwr.setData(b,[b,g,e,Integer.$valueOf(1)],0,0,0,0,0)}catch(p){if(B(p,Exception))JU.Logger.error("AtomCollection.loadData error: "+p);else throw p;}},"~N,~S,~S,~B");c(c$,"loadCoordinates",function(a,
b,d){var c=JU.Parser.markLines(a,";"),g=b?new JU.V3:null;try{for(var e=JU.PT.parseInt(a.substring(0,c[0]-1)),h=1;h<=e;h++){var l=JU.PT.getTokens(JU.PT.parseTrimmed(a.substring(c[h],c[h+1]))),j=JU.PT.parseInt(l[0])-1,n=JU.PT.parseFloat(l[3]),m=JU.PT.parseFloat(l[4]),r=JU.PT.parseFloat(l[5]);b?(g.set(n,m,r),this.setAtomVibrationVector(j,g)):(this.setAtomCoord(j,n,m,r),d||this.untaint(j,2))}}catch(y){if(B(y,Exception))JU.Logger.error("Frame.loadCoordinate error: "+y);else throw y;}},"~S,~B,~B");c(c$,
"validateBspf",function(a){null!=this.bspf&&(this.bspf.isValid=a);this.averageAtomPoint=null},"~B");c(c$,"validateBspfForModel",function(a,b){null!=this.bspf&&this.bspf.validateModel(a,b)},"~N,~B");c(c$,"setPreserveState",function(a){this.preserveState=a},"~B");c$.getUserSettableType=c(c$,"getUserSettableType",function(a){var b=0==a.indexOf("property_");a=b?a.substring(9):a;for(var d=0;15>d;d++)if(JM.AtomCollection.userSettableValues[d].equalsIgnoreCase(a))return d;return b?15:-1},"~S");c(c$,"getTaintedAtoms",
function(a){return null==this.tainted?null:this.tainted[a]},"~N");c(c$,"taintAtoms",function(a,b){this.canSkipLoad=!1;if(this.preserveState)for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1))this.taintAtom(d,b)},"JU.BS,~N");c(c$,"taintAtom",function(a,b){this.preserveState&&(null==this.tainted&&(this.tainted=Array(15)),null==this.tainted[b]&&(this.tainted[b]=JU.BS.newN(this.ac)),this.tainted[b].set(a),2==b&&this.validateBspfForModel(this.am[this.at[a].mi].trajectoryBaseIndex,!1))},"~N,~N");c(c$,"untaint",
function(a,b){this.preserveState&&(null==this.tainted||null==this.tainted[b]||this.tainted[b].clear(a))},"~N,~N");c(c$,"setTaintedAtoms",function(a,b){this.preserveState&&(null==a?null!=this.tainted&&(this.tainted[b]=null):(null==this.tainted&&(this.tainted=Array(15)),null==this.tainted[b]&&(this.tainted[b]=JU.BS.newN(this.ac)),JU.BSUtil.copy2(a,this.tainted[b])))},"JU.BS,~N");c(c$,"unTaintAtoms",function(a,b){if(!(null==this.tainted||null==this.tainted[b])){for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+
1))this.tainted[b].clear(d);0>this.tainted[b].nextSetBit(0)&&(this.tainted[b]=null)}},"JU.BS,~N");c(c$,"findNearest2",function(a,b,d,c,g){for(var e=null,h=this.ac;0<=--h;)if(!(null!=c&&c.get(h))){var l=this.at[h];l.isClickable()&&this.isCursorOnTopOf(l,a,b,g,e)&&(e=l)}d[0]=e},"~N,~N,~A,JU.BS,~N");c(c$,"isCursorOnTopOf",function(a,b,d,c,g){return 1<a.sZ&&!this.g3d.isClippedZ(a.sZ)&&this.g3d.isInDisplayRange(a.sX,a.sY)&&a.isCursorOnTopOf(b,d,c,g)},"JM.Atom,~N,~N,~N,JM.Atom");c(c$,"fillADa",function(a,
b){a.atomXyz=this.at;a.ac=this.ac;a.atomicNumber=E(this.ac,0);var d=0!=(b&2);d&&(a.atomRadius=M(this.ac,0));for(var c=0!=(b&16),g=0;g<this.ac;g++){var e=this.at[g];e.isDeleted()||!c&&0<=a.modelIndex&&e.mi!=a.firstModelIndex?(null==a.bsIgnored&&(a.bsIgnored=new JU.BS),a.bsIgnored.set(g)):(a.atomicNumber[g]=e.getElementNumber(),a.lastModelIndex=e.mi,d&&(a.atomRadius[g]=this.getWorkingRadius(e,a)))}},"J.atomdata.AtomData,~N");c(c$,"getWorkingRadius",function(a,b){var d=0,c=b.radiusData;switch(c.factorType){case J.atomdata.RadiusData.EnumType.ABSOLUTE:d=
c.value;break;case J.atomdata.RadiusData.EnumType.FACTOR:case J.atomdata.RadiusData.EnumType.OFFSET:switch(c.vdwType){case J.c.VDW.BONDING:d=a.getBondingRadius();break;case J.c.VDW.ADPMAX:d=a.getADPMinMax(!0);break;case J.c.VDW.ADPMIN:d=a.getADPMinMax(!1);break;default:d=a.getVanderwaalsRadiusFloat(this.vwr,b.radiusData.vdwType)}d=c.factorType===J.atomdata.RadiusData.EnumType.FACTOR?d*c.value:d+c.value}return d+c.valueExtended},"JM.Atom,J.atomdata.AtomData");c(c$,"calculateHydrogens",function(a,b,
d,c,g){var e=new JU.V3,h=new JU.V3,l=Array(this.ac),j=this.vwr.slm.bsDeleted,n,m=0;if(null!=a)for(var r=a.nextSetBit(0);0<=r;r=a.nextSetBit(r+1))if(!(null!=j&&j.get(r))){var y=this.at[r],w=y.getElementNumber();if(!(c&&6!=w)){var p=6>=w?1.1:10>=w?1:1.3;switch(w){case 7:case 8:p=1}if(!(d&&0<y.getCovalentHydrogenCount())&&(n=this.getImplicitHydrogenCount(y,!1),0!=n)){var q=this.aaRet[0],s=this.aaRet[2],t=this.aaRet[3];l[r]=Array(n);var u=0;if(0==t)switch(n){case 4:e.set(0.635,0.635,0.635),n=JU.P3.newP(e),
n.add(y),l[r][u++]=n,null!=g&&g.addLast(y);case 3:e.set(-0.635,-0.635,0.635),n=JU.P3.newP(e),n.add(y),l[r][u++]=n,null!=g&&g.addLast(y);case 2:e.set(-0.635,0.635,-0.635),n=JU.P3.newP(e),n.add(y),l[r][u++]=n,null!=g&&g.addLast(y);case 1:e.set(0.635,-0.635,-0.635),n=JU.P3.newP(e),n.add(y),l[r][u++]=n,null!=g&&g.addLast(y)}else switch(n){case 3:this.getHybridizationAndAxes(r,w,e,h,"sp3b",!1,!0);n=new JU.P3;n.scaleAdd2(p,e,y);l[r][u++]=n;null!=g&&g.addLast(y);this.getHybridizationAndAxes(r,w,e,h,"sp3c",
!1,!0);n=new JU.P3;n.scaleAdd2(p,e,y);l[r][u++]=n;null!=g&&g.addLast(y);this.getHybridizationAndAxes(r,w,e,h,"sp3d",!1,!0);n=new JU.P3;n.scaleAdd2(p,e,y);l[r][u++]=n;null!=g&&g.addLast(y);break;case 2:s=2==s||5==w||1==t&&4==q||7==w&&this.isAdjacentSp2(y);this.getHybridizationAndAxes(r,w,e,h,s?"sp2b":3==q?"sp3c":"lpa",!1,!0);n=JU.P3.newP(e);n.scaleAdd2(p,e,y);l[r][u++]=n;null!=g&&g.addLast(y);this.getHybridizationAndAxes(r,w,e,h,s?"sp2c":3==q?"sp3d":"lpb",!1,!0);n=JU.P3.newP(e);n.scaleAdd2(p,e,y);
l[r][u++]=n;null!=g&&g.addLast(y);break;case 1:switch(q-t){case 1:if(8==w&&y===y.group.getCarbonylOxygenAtom()){l[r]=null;continue}null!=this.getHybridizationAndAxes(r,w,e,h,2==s||5==w||7==w&&this.isAdjacentSp2(y)?"sp2c":"sp3d",!0,!1)?(n=JU.P3.newP(e),n.scaleAdd2(p,e,y),l[r][u++]=n,null!=g&&g.addLast(y)):l[r]=[];break;case 2:this.getHybridizationAndAxes(r,w,e,h,4==q?"sp2c":"sp2b",!1,!1);n=JU.P3.newP(e);n.scaleAdd2(p,e,y);l[r][u++]=n;null!=g&&g.addLast(y);break;case 3:this.getHybridizationAndAxes(r,
w,e,h,"spb",!1,!0),n=JU.P3.newP(e),n.scaleAdd2(p,e,y),l[r][u++]=n,null!=g&&g.addLast(y)}}m+=u}}}b[0]=m;return l},"JU.BS,~A,~B,~B,JU.Lst");c(c$,"isAdjacentSp2",function(a){for(var b=a.bonds,d=0;d<b.length;d++)for(var c=b[d].getOtherAtom(a).bonds,g=0;g<c.length;g++)switch(c[g].order){case 515:case 514:case 2:case 3:return!0}return!1},"JM.Atom");c(c$,"getImplicitHydrogenCount",function(a,b){var d=a.getTargetValence();if(0>d)return 0;var c=a.getFormalCharge();null==this.aaRet&&(this.aaRet=E(4,0));this.aaRet[0]=
d;this.aaRet[1]=c;this.aaRet[2]=0;this.aaRet[3]=a.getCovalentBondCount();var g=this.am[a.mi],g=g.isBioModel&&!g.isPdbWithMultipleBonds?a.group.getGroup3():null;null!=g&&0==c&&this.vwr.getJBR().getAminoAcidValenceAndCharge(g,a.getAtomName(),this.aaRet)&&(d=this.aaRet[0],c=this.aaRet[1]);0!=c&&(d+=4==d?-Math.abs(c):c,this.aaRet[0]=d);d-=a.getValence();return 0>d&&!b?0:d},"JM.Atom,~B");c(c$,"fixFormalCharges",function(a){for(var b=0,d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1)){var c=this.at[d],g=this.getImplicitHydrogenCount(c,
!0);if(0!=g){var e=c.getFormalCharge(),g=e-g;c.setFormalCharge(g);this.taintAtom(d,4);JU.Logger.debugging&&JU.Logger.debug("atom "+c+" formal charge "+e+" -> "+g);b++}}return b},"JU.BS");c(c$,"getHybridizationAndAxes",function(a,b,d,c,g,e,h){var l=0<g.length&&"-"==g.charAt(0)?g.substring(1):g;if(0<=g.indexOf("d")&&!g.endsWith("sp3d"))return this.getHybridizationAndAxesD(a,d,c,l);g=this.at[a];0==b&&(b=g.getElementNumber());var j=this.getAttached(g,4,e),n=j.length,m=l.charCodeAt(l.length-1)-97;if(0>
m||6<m)m=0;d.set(0,0,0);c.set(0,0,0);for(var r=Array(4),p=0;p<n;p++)r[p]=JU.V3.newVsub(g,j[p]),r[p].normalize(),d.add(r[p]);0<n&&c.setT(r[0]);p=!1;a=new JU.V3;if(3<=n){2.984513>c.angle(r[1])?a.cross(c,r[1]):a.cross(c,r[2]);a.normalize();var w=new JU.V3;2.984513>r[1].angle(r[2])?w.cross(r[1],r[2]):w.cross(c,r[2]);w.normalize();p=0.95<=Math.abs(w.dot(a))}var q=0==l.indexOf("sp3"),s=!q&&0==l.indexOf("sp2"),t=!q&&!s&&0==l.indexOf("sp"),u=0==l.indexOf("p"),v=0==l.indexOf("lp"),w=null;if(e){if(0==n)return null;
if(q){if(3<m||4<n)return null}else if(s){if(2<m||3<n)return null}else if(t&&(1<m||2<n))return null;switch(n){case 1:if(1==b&&!q)return null;if(q){w="sp3";break}switch(j[0].getCovalentBondCount()){case 1:if(2!=j[0].getValence()){w="sp";break}case 2:w=t?"sp":"sp2";break;case 3:if(!s&&!u)return null;w="sp2"}break;case 2:if(0.1>d.length()){if(0<=l.indexOf("2")||0<=l.indexOf("3"))return null;w="sp";break}w=q?"sp3":"sp2";if(0==l.indexOf("sp"))break;if(v){w="lp";break}w=l;break;default:if(p)w="sp2";else{if(v&&
3==n){w="lp";break}w="sp3"}}if(null==w)return null;if(0==l.indexOf("p")){if("sp3"===w)return null}else if(0>l.indexOf(w))return null}if(m<n&&!l.startsWith("p")&&!l.startsWith("l"))return d.sub2(j[m],g),d.normalize(),w;switch(n){case 0:l.equals("sp3c")||l.equals("sp2d")||l.equals("lpa")?d.set(-0.5,-0.7,1):l.equals("sp3b")||l.equals("lpb")?d.set(0.5,-0.7,-1):l.equals("sp3a")?d.set(0,1,0):d.set(0,0,1);c.set(1,0,0);break;case 1:a.setT(JM.AtomCollection.vRef);c.cross(a,d);if(q){for(p=0;p<j[0].bonds.length;p++)if(j[0].bonds[p].isCovalent()&&
j[0].getBondedAtomIndex(p)!=g.i&&(c.sub2(j[0],j[0].bonds[p].getOtherAtom(j[0])),c.cross(d,c),0!=c.length())){c.cross(c,d);break}c.normalize();Float.isNaN(c.x)&&(c.setT(JM.AtomCollection.vRef),c.cross(c,d));a.cross(d,c);a.normalize();d.normalize();c.scaleAdd2(2.828,c,d);3!=m&&(c.normalize(),(new JU.M3).setAA(JU.A4.new4(d.x,d.y,d.z,2.09439507*(2==m?1:-1))).rotate(c));d.setT(c);c.cross(a,d);break}a.cross(c,d);switch(j[0].getCovalentBondCount()){case 1:if(2!=j[0].getValence())break;case 2:h=j[0];c.setT(d);
for(a.setT(JM.AtomCollection.vRef);null!=h&&2==h.getCovalentBondCount();){l=h.bonds;b=null;for(p=0;p<l.length;p++)if(l[p].isCovalent()&&(b=l[p].getOtherAtom(h),b!==g)){a.sub2(b,h);break}a.cross(a,c);if(0.1<a.length()||2!=b.getCovalentBondCount())break;g=h;h=b}0.1<a.length()?(d.cross(a,c),d.normalize(),1==m&&d.scale(-1),d.scale(JM.AtomCollection.sqrt3_2),d.scaleAdd2(0.5,c,d),u&&(a.cross(d,c),d.setT(a),a.setT(c)),c.cross(a,d)):(d.setT(c),c.cross(JM.AtomCollection.vRef,c));break;case 3:this.getHybridizationAndAxes(j[0].i,
0,c,a,"pz",!1,h),a.setT(c),s?(c.cross(c,d),1==m&&c.scale(-1),c.scale(JM.AtomCollection.sqrt3_2),d.scaleAdd2(0.5,d,c)):(a.setT(d),d.setT(c)),c.cross(a,d)}break;case 2:if(0.1>d.length()){if(!l.equals("pz")){b=j[0];(g=3==b.getCovalentBondCount())||(g=3==(b=j[1]).getCovalentBondCount());if(g){this.getHybridizationAndAxes(b.i,0,c,d,"pz",!1,h);l.equals("px")&&c.scale(-1);d.setT(r[0]);break}a.setT(JM.AtomCollection.vRef);d.cross(a,c);a.cross(d,c)}d.setT(c);c.cross(a,d);break}a.cross(d,c);if(s){c.cross(d,
a);break}if(q||v){a.normalize();d.normalize();l.equals("lp")||(0==m||2==m?d.scaleAdd2(-1.2,a,d):d.scaleAdd2(1.2,a,d));c.cross(d,a);break}c.cross(d,a);d.setT(a);0>d.z&&(d.scale(-1),c.scale(-1));break;default:if(q)break;if(!p){c.cross(d,c);break}d.setT(a);0>d.z&&h&&(d.scale(-1),c.scale(-1))}c.normalize();d.normalize();return w},"~N,~N,JU.V3,JU.V3,~S,~B,~B");c(c$,"getHybridizationAndAxesD",function(a,b,d,c){c.startsWith("sp3d2")&&(c="d2sp3"+(5==c.length?"a":c.substring(5)));c.startsWith("sp3d")&&(c=
"dsp3"+(4==c.length?"a":c.substring(4)));if(c.equals("d2sp3")||c.equals("dsp3"))c+="a";var g=c.startsWith("dsp3"),e=c.charCodeAt(c.length-1)-97;if(null!=b&&(!g&&(5<e||!c.startsWith("d2sp3"))||g&&4<e))return null;a=this.at[a];c=this.getAttached(a,6,!0);if(null==c)return null==b?null:"?";var h=c.length;if(3>h&&null!=b)return null;for(var l=e>=h,j=x(h*(h-1)/2),n=JU.AU.newInt2(j),m=E(3,0),j=E(3,j,0),r=0,p=0,w=0;w<h-1;w++)for(var q=w+1;q<h;q++){var s=JU.Measure.computeAngleABC(c[w],a,c[q],!0),s=105>s?
0:150<=s?2:1;j[s][m[s]]=r;m[s]++;n[r++]=[w,q];0==w&&1==s&&p++}r=100*m[0]+10*m[1]+m[2];if(null==b)switch(r){default:return"";case 0:return"";case 1:return"linear";case 100:case 10:return"bent";case 111:case 201:return"T-shaped";case 30:case 120:case 210:case 300:return 162<Math.abs(JU.Measure.computeTorsion(c[0],a,c[1],c[2],!0))?"trigonal planar":"trigonal pyramidal";case 330:return 1==p%2?"tetrahedral":"uncapped trigonal pyramid";case 60:case 150:case 240:return"tetrahedral";case 402:return"square planar";
case 411:case 501:return"see-saw";case 631:return"trigonal bipyramidal";case 802:return"uncapped square pyramid";case 1203:return"octahedral"}switch(r){default:return null;case 201:break;case 210:case 330:case 411:case 631:if(!g)return null;break;case 300:case 402:case 501:case 802:case 1203:if(g)return null}if(l)if(g)switch(m[1]){case 0:b.sub2(c[n[j[0][0]][0]],a);d.sub2(c[n[j[0][0]][1]],a);b.cross(b,d);b.normalize();4==e&&b.scale(-1);m=this.findNotAttached(h,n,j[2],m[2]);w=m.nextSetBit(0);d.sub2(c[w],
a);d.normalize();d.scale(0.5);b.scaleAdd2(JM.AtomCollection.sqrt3_2,b,d);e=-1;break;case 1:4==e?(d=n[j[1][0]],b.add2(c[d[0]],c[d[1]]),b.scaleAdd2(-2,a,b),e=-1):(m=this.findNotAttached(h,n,j[1],m[1]),e=m.nextSetBit(0));break;default:m=this.findNotAttached(h,n,j[1],m[1]),e=m.nextSetBit(0)}else{r=!1;if(4==h)switch(m[2]){case 1:m=this.findNotAttached(h,n,j[2],m[2]);w=m.nextSetBit(0);e=4==e?w:m.nextSetBit(w+1);break;default:r=!0}else{m=this.findNotAttached(h,n,j[2],m[2]);w=m.nextSetBit(0);for(q=h;q<e&&
0<=w;q++)w=m.nextSetBit(w+1);-1==w?r=!0:e=w}r&&(b.sub2(c[n[j[0][0]][0]],a),d.sub2(c[n[j[0][0]][1]],a),b.cross(b,d),4==e&&b.scale(-1),e=-1)}0<=e&&b.sub2(c[e],a);l&&b.scale(-1);b.normalize();return g?"dsp3":"d2sp3"},"~N,JU.V3,JU.V3,~S");c(c$,"getAttached",function(a,b,d){var c=a.getCovalentBondCount();if(c>b)return null;b=Array(c);if(0<c){for(var c=a.bonds,g=0,e=0;e<c.length;e++)c[e].isCovalent()&&(b[g++]=c[e].getOtherAtom(a));d&&java.util.Arrays.sort(b,T(JM.AtomCollection.AtomSorter,this,null))}return b},
"JM.Atom,~N,~B");c(c$,"findNotAttached",function(a,b,d,c){var g=JU.BS.newN(a);g.setBits(0,a);for(var e=0;e<a;e++)for(var h=0;h<c;h++){var l=b[d[h]];(l[0]==e||l[1]==e)&&g.clear(e)}return g},"~N,~A,~A,~N");c(c$,"getAtomBitsMDa",function(a,b){var d=new JU.BS,c,g;c=q(b,Integer)?b.intValue():0;var e=0;switch(a){case 1613758488:return this.getWaterAtoms(d);case 1095761939:for(e=this.ac;0<=--e;)this.at[e].getResno()==c&&d.set(e);break;case 1297090050:for(e=this.ac;0<=--e;)this.at[e].getSymOp()==c&&d.set(e);
break;case 1095763969:for(e=this.ac;0<=--e;)this.at[e].getAtomNumber()==c&&d.set(e);break;case 1087375362:c=","+b+",";for(e=this.ac;0<=--e;)g=this.at[e].getAtomName(),0<=c.indexOf(g)&&0<=c.indexOf(","+g+",")&&d.set(e);break;case 1087375361:c=","+b+",";for(e=this.ac;0<=--e;)g=this.at[e].getAtomType(),0<=c.indexOf(g)&&0<=c.indexOf(","+g+",")&&d.set(e);break;case 1048613:for(e=this.ac;0<=--e;)this.at[e].getGroupID()==c&&d.set(e);break;case 1048609:return JU.BSUtil.copy(this.getChainBits(c));case 1048614:return JU.BSUtil.copy(this.getSeqcodeBits(c,
!0));case 1613758470:for(e=this.ac;0<=--e;)this.at[e].isHetero()&&d.set(e);break;case 1613758476:for(e=this.ac;0<=--e;)1==this.at[e].getElementNumber()&&d.set(e);break;case 3145741:for(e=this.ac;0<=--e;)this.at[e].isLeadAtom()&&d.set(e);break;case 3145744:for(e=this.ac;0<=--e;)this.at[e].isProtein()&&d.set(e);break;case 3145764:for(e=this.ac;0<=--e;)this.at[e].isCarbohydrate()&&d.set(e);break;case 137363467:case 3145760:g=137363467==a?J.c.STR.HELIX:J.c.STR.SHEET;for(e=this.ac;0<=--e;)this.at[e].isWithinStructure(g)&&
d.set(e);break;case 3145742:for(e=this.ac;0<=--e;)this.at[e].isNucleic()&&d.set(e);break;case 3145732:for(e=this.ac;0<=--e;)this.at[e].isDna()&&d.set(e);break;case 3145750:for(e=this.ac;0<=--e;)this.at[e].isRna()&&d.set(e);break;case 3145746:for(e=this.ac;0<=--e;)this.at[e].isPurine()&&d.set(e);break;case 3145748:for(e=this.ac;0<=--e;)this.at[e].isPyrimidine()&&d.set(e);break;case 1087375365:c=b;g=new JU.BS;for(e=c.nextSetBit(0);0<=e;e=c.nextSetBit(e+1))g.set(this.at[e].getElementNumber());for(e=
this.ac;0<=--e;)g.get(this.at[e].getElementNumber())&&d.set(e);break;case 1095761941:c=b;g=new JU.BS;for(e=c.nextSetBit(0);0<=e;e=c.nextSetBit(e+1))g.set(this.at[e].atomSite);for(e=this.ac;0<=--e;)g.get(this.at[e].atomSite)&&d.set(e);break;case 1073741824:return this.getIdentifierOrNull(b);case 1048608:c=b.toUpperCase();0<=c.indexOf("\\?")&&(c=JU.PT.rep(c,"\\?","\u0001"));(g=c.startsWith("?*"))&&(c=c.substring(1));for(e=this.ac;0<=--e;)this.isAtomNameMatch(this.at[e],c,g,g)&&d.set(e);break;case 1048607:for(e=
this.ac;0<=--e;)this.at[e].isAltLoc(b)&&d.set(e);break;case 1048612:return this.getSpecName(b)}if(0>e)return d;c=b;var h;g=c.nextSetBit(0);if(0>g)return d;e=0;switch(a){case 1087373318:for(e=g;0<=e;e=c.nextSetBit(e+1))g=this.at[e].group.selectAtoms(d),g>e&&(e=g);break;case 1095766030:for(e=g;0<=e;e=c.nextSetBit(e+1))if(!d.get(e)){h=this.at[e].mi;d.set(e);for(g=e;0<=--g;)if(this.at[g].mi==h)d.set(g);else break;for(;++e<this.ac;)if(this.at[e].mi==h)d.set(e);else break}break;case 1087373316:c=JU.BSUtil.copy(b);
for(e=c.nextSetBit(0);0<=e;e=c.nextSetBit(e+1))this.at[e].getChain().setAtomBitSet(d),c.andNot(d);break;case 1095761937:for(e=g;0<=e;e=c.nextSetBit(e+1))if(!d.get(e)){h=this.at[e].getPolymerIndexInModel();d.set(e);for(g=e;0<=--g;)if(this.at[g].getPolymerIndexInModel()==h)d.set(g);else break;for(;++e<this.ac;)if(this.at[e].getPolymerIndexInModel()==h)d.set(e);else break}break;case 1641025539:for(e=g;0<=e;e=c.nextSetBit(e+1))if(!d.get(e)){h=this.at[e].group.getStructure();d.set(e);for(g=e;0<=--g;)if(this.at[g].group.getStructure()===
h)d.set(g);else break;for(;++e<this.ac;)if(this.at[e].group.getStructure()===h)d.set(e);else break}}0==e&&JU.Logger.error("MISSING getAtomBits entry for "+JS.T.nameOf(a));return d},"~N,~O");c(c$,"getWaterAtoms",function(a){for(var b=E(2,0),d,c=this.ac;0<=--c;){var g=this.at[c].getGroupID();if(42<=g&&45>g)a.set(c);else if(8==(d=this.at[c]).getElementNumber()&&2==d.getCovalentBondCount()){for(var g=d.bonds,e=0,h,l=g.length;0<=--l&&3>e;)if(g[l].isCovalent()&&1==(h=g[l].getOtherAtom(d)).getElementNumber())b[e++%
2]=h.i;2==e&&(a.set(b[1]),a.set(b[0]),a.set(c))}}return a},"JU.BS");c(c$,"getIdentifierOrNull",function(a){var b=this.getSpecNameOrNull(a,!1);0<=a.indexOf("\\?")&&(a=JU.PT.rep(a,"\\?","\u0001"));if(null!=b||0<a.indexOf("?"))return b;if(0<a.indexOf("*"))return this.getSpecNameOrNull(a,!0);for(var d=a.length,c=0;c<d&&JU.PT.isLetter(a.charAt(c));)++c;b=this.getSpecNameOrNull(a.substring(0,c),!1);if(c==d)return b;null==b&&(b=new JU.BS);for(var g=c;c<d&&JU.PT.isDigit(a.charAt(c));)++c;var e=0;try{e=Integer.parseInt(a.substring(g,
c))}catch(h){if(B(h,NumberFormatException))return null;throw h;}g=" ";c<d&&"^"==a.charAt(c)&&++c<d&&(g=a.charAt(c));e=JM.Group.getSeqcodeFor(e,g);e=this.getSeqcodeBits(e,!1);if(null==e){" "!=g&&(e=this.getSeqcodeBits(Character.toUpperCase(a.charAt(c)).charCodeAt(0),!1));if(null==e)return null;c++}b.and(e);if(c>=d)return b;if(c!=d-1)return null;b.and(this.getChainBits(a.charCodeAt(c)));return b},"~S");c(c$,"getSpecName",function(a){var b=this.getSpecNameOrNull(a,!1);if(null!=b)return b;0<a.indexOf("*")&&
(b=this.getSpecNameOrNull(a,!0));return null==b?new JU.BS:b},"~S");c(c$,"getSpecNameOrNull",function(a,b){var d=null;a=a.toUpperCase();0<=a.indexOf("\\?")&&(a=JU.PT.rep(a,"\\?","\u0001"));var c=a.startsWith("?*");c&&(a=a.substring(1));for(var g=this.ac;0<=--g;){var e=this.at[g].getGroup3(!0);if(null!=e&&0<e.length){if(JU.PT.isMatch(e,a,b,!0)){null==d&&(d=JU.BS.newN(g+1));for(d.set(g);0<=--g&&this.at[g].getGroup3(!0).equals(e);)d.set(g);g++}}else this.isAtomNameMatch(this.at[g],a,b,c)&&(null==d&&(d=
JU.BS.newN(g+1)),d.set(g))}return d},"~S,~B");c(c$,"isAtomNameMatch",function(a,b,d,c){return JU.PT.isMatch(a.getAtomName().toUpperCase(),b,d,c)},"JM.Atom,~S,~B,~B");c(c$,"getSeqcodeBits",function(a,b){var d=new JU.BS,c=JM.Group.getSeqNumberFor(a),g=2147483647!=c,e=!0,h=JM.Group.getInsertionCodeChar(a);switch(h){case "?":for(var l=this.ac;0<=--l;){var j=this.at[l].getSeqcode();if(!g||c==JM.Group.getSeqNumberFor(j)&&0!=JM.Group.getInsertionCodeFor(j))d.set(l),e=!1}break;default:for(l=this.ac;0<=--l;)if(j=
this.at[l].getSeqcode(),a==j||!g&&a==JM.Group.getInsertionCodeFor(j)||"*"==h&&c==JM.Group.getSeqNumberFor(j))d.set(l),e=!1}return!e||b?d:null},"~N,~B");c(c$,"getChainBits",function(a){var b=this.vwr.getBoolean(603979823);0<=a&&(300>a&&!b)&&(a=JM.AtomCollection.chainToUpper(a));for(var d=new JU.BS,c=JU.BS.newN(this.ac),g,e=c.nextClearBit(0);e<this.ac;e=c.nextClearBit(e+1)){var h=this.at[e].getChain();a==(g=h.chainID)||!b&&0<=g&&300>g&&a==JM.AtomCollection.chainToUpper(g)?(h.setAtomBitSet(d),c.or(d)):
h.setAtomBitSet(c)}return d},"~N");c$.chainToUpper=c(c$,"chainToUpper",function(a){return 97<=a&&122>=a?a-32:256<=a&&300>a?a-191:a},"~N");c(c$,"getAtomIndices",function(a){for(var b=0,d=E(this.ac,0),c=a.nextSetBit(0);0<=c&&c<this.ac;c=a.nextSetBit(c+1))d[c]=++b;return d},"JU.BS");c(c$,"getAtomsNearPlane",function(a,b){for(var d=new JU.BS,c=this.ac;0<=--c;){var g=this.at[c],e=JU.Measure.distanceToPlane(b,g);(0<a&&-0.1<=e&&e<=a||0>a&&0.1>=e&&e>=a||0==a&&0.01>Math.abs(e))&&d.set(g.i)}return d},"~N,JU.P4");
c(c$,"getAtomsNearPts",function(a,b,d){var c=new JU.BS;if(0==b.length||null!=d&&0==d.cardinality())return c;null==d&&(d=JU.BSUtil.setAll(b.length));for(var g=this.ac;0<=--g;)for(var e=this.at[g],h=d.nextSetBit(0);0<=h;h=d.nextSetBit(h+1))if(e.distance(b[h])<a){c.set(g);break}return c},"~N,~A,JU.BS");c(c$,"clearVisibleSets",function(){this.haveBSClickable=this.haveBSVisible=!1});c(c$,"getRenderable",function(a){this.clearVisibleSets();a.clearAll();for(var b=this.ac;0<=--b;)this.at[b].isVisible(1)&&
a.set(b)},"JU.BS");c(c$,"getVisibleSet",function(a){if(a)this.vwr.setModelVisibility();else if(this.haveBSVisible)return this.bsVisible;this.bsVisible.clearAll();for(a=this.ac;0<=--a;)this.at[a].checkVisible()&&this.bsVisible.set(a);this.haveBSVisible=!0;return this.bsVisible},"~B");c(c$,"getClickableSet",function(a){if(a)this.vwr.setModelVisibility();else if(this.haveBSClickable)return this.bsClickable;this.bsClickable.clearAll();for(a=this.ac;0<=--a;)this.at[a].isClickable()&&this.bsClickable.set(a);
this.haveBSClickable=!0;return this.bsClickable},"~B");c(c$,"isModulated",function(a){return null!=this.bsModulated&&this.bsModulated.get(a)},"~N");c(c$,"deleteModelAtoms",function(a,b,d){this.at=JU.AU.deleteElements(this.at,a,b);this.ac=this.at.length;for(var c=a;c<this.ac;c++)this.at[c].i=c,this.at[c].mi--;null!=this.bsModulated&&JU.BSUtil.deleteBits(this.bsModulated,d);this.deleteAtomTensors(d);this.atomNames=JU.AU.deleteElements(this.atomNames,a,b);this.atomTypes=JU.AU.deleteElements(this.atomTypes,
a,b);this.atomSerials=JU.AU.deleteElements(this.atomSerials,a,b);this.atomSeqIDs=JU.AU.deleteElements(this.atomSeqIDs,a,b);this.bfactor100s=JU.AU.deleteElements(this.bfactor100s,a,b);this.hasBfactorRange=!1;this.occupancies=JU.AU.deleteElements(this.occupancies,a,b);this.partialCharges=JU.AU.deleteElements(this.partialCharges,a,b);this.atomTensorList=JU.AU.deleteElements(this.atomTensorList,a,b);this.vibrations=JU.AU.deleteElements(this.vibrations,a,b);this.nSurfaceAtoms=0;this.surfaceDistance100s=
this.bsSurface=null;if(null!=this.tainted)for(a=0;15>a;a++)JU.BSUtil.deleteBits(this.tainted[a],d)},"~N,~N,JU.BS");c(c$,"getAtomIdentityInfo",function(a,b,d){b.put("_ipt",Integer.$valueOf(a));b.put("atomIndex",Integer.$valueOf(a));b.put("atomno",Integer.$valueOf(this.at[a].getAtomNumber()));b.put("info",this.getAtomInfo(a,null,d));b.put("sym",this.at[a].getElementSymbol())},"~N,java.util.Map,JU.P3");c(c$,"getAtomTensorList",function(a){return 0>a||null==this.atomTensorList||a>=this.atomTensorList.length?
null:this.atomTensorList[a]},"~N");c(c$,"deleteAtomTensors",function(a){if(null!=this.atomTensors){for(var b=new JU.Lst,d,c=this.atomTensors.keySet().iterator();c.hasNext()&&((d=c.next())||1);){for(var g=this.atomTensors.get(d),e=g.size();0<=--e;){var h=g.get(e);(a.get(h.atomIndex1)||0<=h.atomIndex2&&a.get(h.atomIndex2))&&g.remove(e)}0==g.size()&&b.addLast(d)}for(e=b.size();0<=--e;)this.atomTensors.remove(b.get(e))}},"JU.BS");c(c$,"setAtomTensors",function(a,b){if(!(null==b||0==b.size())){null==this.atomTensors&&
(this.atomTensors=new java.util.Hashtable);null==this.atomTensorList&&(this.atomTensorList=Array(this.at.length));this.atomTensorList=JU.AU.ensureLength(this.atomTensorList,this.at.length);this.atomTensorList[a]=JM.AtomCollection.getTensorList(b);for(var d=b.size();0<=--d;){var c=b.get(d);c.atomIndex1=a;c.atomIndex2=-1;c.modelIndex=this.at[a].mi;this.addTensor(c,c.type);null!=c.altType&&this.addTensor(c,c.altType)}}},"~N,JU.Lst");c$.getTensorList=c(c$,"getTensorList",function(a){for(var b=-1,d=!1,
c=a.size(),g=c;0<=--g;){var e=a.get(g);e.forThermalEllipsoid?b=g:2==e.iType&&(d=!0)}var h=Array((0<=b||!d?0:1)+c);if(0<=b&&(h[0]=a.get(b),1==a.size()))return h;if(d){b=0;for(g=c;0<=--g;)e=a.get(g),e.forThermalEllipsoid||(h[++b]=e)}else for(g=0;g<c;g++)h[g]=a.get(g);return h},"JU.Lst");c(c$,"getAtomTensor",function(a,b){var d=this.getAtomTensorList(a);if(null!=d&&null!=b){b=b.toLowerCase();for(var c=0;c<d.length;c++){var g=d[c];if(null!=g&&(b.equals(g.type)||b.equals(g.altType)))return g}}return null},
"~N,~S");c(c$,"addTensor",function(a,b){b=b.toLowerCase();var d=this.atomTensors.get(b);null==d&&this.atomTensors.put(b,d=new JU.Lst);d.addLast(a)},"JU.Tensor,~S");c(c$,"getAllAtomTensors",function(a){if(null==this.atomTensors)return null;if(null!=a)return this.atomTensors.get(a.toLowerCase());a=new JU.Lst;for(var b,d=this.atomTensors.entrySet().iterator();d.hasNext()&&((b=d.next())||1);)a.addAll(b.getValue());return a},"~S");c(c$,"scaleVectorsToMax",function(a){if(!(null==this.vibrations||0==a)){for(var b=
0,d=JU.BS.newN(this.ac),c=this.vibrations.length;0<=--c;){var g=this.getVibration(c,!1);if(null!=g&&(-1==g.modDim||-2==g.modDim))b=Math.max(b,g.length()),d.set(c)}if(!(0==b||b==a)){b=a/b;a=!1;for(c=d.nextSetBit(0);0<=c;c=d.nextSetBit(c+1)){var g=this.getVibration(c,!1),e=this.getModulation(c);null!=e?e.scaleVibration(b):g.scale(b);a||(this.taintAtom(c,12),a=!0)}this.tainted[12].or(d)}}},"~N");c$.$AtomCollection$AtomSorter$=function(){I(self.c$);c$=s(function(){R(this,arguments);p(this,arguments)},
JM.AtomCollection,"AtomSorter",null,java.util.Comparator);j(c$,"compare",function(a,b){return a.i>b.i?1:a.i<b.i?-1:0},"JM.Atom,JM.Atom");c$=L()};C(c$,"TAINT_ATOMNAME",0,"TAINT_ATOMTYPE",1,"TAINT_COORD",2,"TAINT_ELEMENT",3,"TAINT_FORMALCHARGE",4,"TAINT_HYDROPHOBICITY",5,"TAINT_BONDINGRADIUS",6,"TAINT_OCCUPANCY",7,"TAINT_PARTIALCHARGE",8,"TAINT_TEMPERATURE",9,"TAINT_VALENCE",10,"TAINT_VANDERWAALS",11,"TAINT_VIBRATION",12,"TAINT_ATOMNO",13,"TAINT_SEQID",14,"TAINT_MAX",15,"userSettableValues",null,"almost180",
2.984513);c$.sqrt3_2=c$.prototype.sqrt3_2=Math.sqrt(3)/2;c$.vRef=c$.prototype.vRef=JU.V3.new3(3.14159,2.71828,1.41421)}),u("JM"),v(["J.api.AtomIndexIterator"],"JM.AtomIteratorWithinModel",["J.atomdata.RadiusData"],function(){c$=s(function(){this.bspf=this.cubeIterator=null;this.isZeroBased=this.hemisphereOnly=this.threadSafe=!1;this.modelIndex=2147483647;this.atomIndex=-1;this.distanceSquared=this.zeroBase=0;this.bsSelected=null;this.checkGreater=this.isGreaterOnly=!1;this.radiusData=null;this.vdw1=
0;this.isVdw=!1;this.vwr=this.atoms=null;this.iNext=0;p(this,arguments)},JM,"AtomIteratorWithinModel",null,J.api.AtomIndexIterator);t(c$,function(){});c(c$,"initialize",function(a,b,d,c,g,e){this.bspf=a;this.bsSelected=b;this.isGreaterOnly=d;this.isZeroBased=c;this.hemisphereOnly=g;this.threadSafe=e;this.cubeIterator=null},"J.bspt.Bspf,JU.BS,~B,~B,~B,~B");j(c$,"setModel",function(a,b,d,c,g,e,h){this.threadSafe&&(b=-1-b);if(b!=this.modelIndex||null==this.cubeIterator)this.cubeIterator=this.bspf.getCubeIterator(b),
this.modelIndex=b;this.zeroBase=this.isZeroBased?d:0;if(-2147483648!=e){this.atomIndex=0>e?-1:c;if(this.isVdw=null!=h)this.radiusData=h,this.atoms=a.at,this.vwr=a.vwr,e=h.factorType===J.atomdata.RadiusData.EnumType.OFFSET?5+h.value:5*h.value,this.vdw1=this.atoms[c].getVanderwaalsRadiusFloat(this.vwr,h.vdwType);this.checkGreater=this.isGreaterOnly&&2147483647!=c;this.setCenter(g,e)}},"JM.ModelSet,~N,~N,~N,JU.T3,~N,J.atomdata.RadiusData");j(c$,"setCenter",function(a,b){this.setCenter2(a,b)},"JU.T3,~N");
c(c$,"setCenter2",function(a,b){null!=this.cubeIterator&&(this.cubeIterator.initialize(a,b,this.hemisphereOnly),this.distanceSquared=b*b)},"JU.T3,~N");j(c$,"hasNext",function(){return this.hasNext2()});c(c$,"hasNext2",function(){if(0<=this.atomIndex)for(;this.cubeIterator.hasMoreElements();){var a=this.cubeIterator.nextElement();if((this.iNext=a.i)!=this.atomIndex&&(!this.checkGreater||this.iNext>this.atomIndex)&&(null==this.bsSelected||this.bsSelected.get(this.iNext)))return!0}else if(this.cubeIterator.hasMoreElements())return a=
this.cubeIterator.nextElement(),this.iNext=a.i,!0;this.iNext=-1;return!1});j(c$,"next",function(){return this.iNext-this.zeroBase});j(c$,"foundDistance2",function(){return null==this.cubeIterator?-1:this.cubeIterator.foundDistance2()});j(c$,"addAtoms",function(a){for(var b;this.hasNext();)if(0<=(b=this.next())){var d;if(this.isVdw){d=this.atoms[b].getVanderwaalsRadiusFloat(this.vwr,this.radiusData.vdwType)+this.vdw1;switch(this.radiusData.factorType){case J.atomdata.RadiusData.EnumType.OFFSET:d+=
2*this.radiusData.value;break;case J.atomdata.RadiusData.EnumType.FACTOR:d*=this.radiusData.value}d*=d}else d=this.distanceSquared;this.foundDistance2()<=d&&a.set(b)}},"JU.BS");j(c$,"release",function(){null!=this.cubeIterator&&(this.cubeIterator.release(),this.cubeIterator=null)})}),u("JM"),v(["JM.AtomIteratorWithinModel"],"JM.AtomIteratorWithinModelSet",null,function(){c$=s(function(){this.center=this.bsModels=null;this.distance=0;p(this,arguments)},JM,"AtomIteratorWithinModelSet",JM.AtomIteratorWithinModel);
t(c$,function(a){K(this,JM.AtomIteratorWithinModelSet,[]);this.bsModels=a},"JU.BS");j(c$,"setCenter",function(a,b){this.center=a;this.distance=b;this.set(0)},"JU.T3,~N");c(c$,"set",function(a){if(0>(this.modelIndex=this.bsModels.nextSetBit(a))||null==(this.cubeIterator=this.bspf.getCubeIterator(this.modelIndex)))return!1;this.setCenter2(this.center,this.distance);return!0},"~N");j(c$,"hasNext",function(){return this.hasNext2()?!0:!this.set(this.modelIndex+1)?!1:this.hasNext()})}),u("JM"),v(["JU.Edge",
"JV.JC"],"JM.Bond",["JU.C"],function(){c$=s(function(){this.atom2=this.atom1=null;this.shapeVisibilityFlags=this.colix=this.mad=0;p(this,arguments)},JM,"Bond",JU.Edge);t(c$,function(a,b,d,c,g){this.atom1=a;this.atom2=b;this.colix=g;this.setOrder(d);this.setMad(c)},"JM.Atom,JM.Atom,~N,~N,~N");c(c$,"setMad",function(a){this.mad=a;this.setShapeVisibility(0!=a)},"~N");c(c$,"setShapeVisibility",function(a){0!=(this.shapeVisibilityFlags&JM.Bond.myVisibilityFlag)!=a&&(this.atom1.addDisplayedBond(JM.Bond.myVisibilityFlag,
a),this.atom2.addDisplayedBond(JM.Bond.myVisibilityFlag,a),this.shapeVisibilityFlags=a?this.shapeVisibilityFlags|JM.Bond.myVisibilityFlag:this.shapeVisibilityFlags&~JM.Bond.myVisibilityFlag)},"~B");c(c$,"getIdentity",function(){return this.index+1+" "+JU.Edge.getBondOrderNumberFromOrder(this.order)+" "+this.atom1.getInfo()+" -- "+this.atom2.getInfo()+" "+this.atom1.distance(this.atom2)});j(c$,"isCovalent",function(){return 0!=(this.order&1023)});j(c$,"isHydrogen",function(){return JM.Bond.isOrderH(this.order)});
c$.isOrderH=c(c$,"isOrderH",function(a){return 0!=(a&30720)},"~N");c(c$,"isStereo",function(){return 0!=(this.order&1024)});c(c$,"isPartial",function(){return 0!=(this.order&224)});c(c$,"isAromatic",function(){return 0!=(this.order&512)});c(c$,"isPymolStyle",function(){return 98304==(this.order&98304)});c(c$,"getEnergy",function(){return 0});c(c$,"getValence",function(){return!this.isCovalent()?0:this.isPartial()||this.is(515)?1:this.order&7});c(c$,"deleteAtomReferences",function(){null!=this.atom1&&
this.atom1.deleteBond(this);null!=this.atom2&&this.atom2.deleteBond(this);this.atom1=this.atom2=null});c(c$,"setTranslucent",function(a,b){this.colix=JU.C.getColixTranslucent3(this.colix,a,b)},"~B,~N");c(c$,"setOrder",function(a){16==this.atom1.getElementNumber()&&16==this.atom2.getElementNumber()&&(a|=256);512==a&&(a=515);this.order=a|this.order&131072},"~N");j(c$,"getAtomIndex1",function(){return this.atom1.i});j(c$,"getAtomIndex2",function(){return this.atom2.i});j(c$,"getCovalentOrder",function(){return JU.Edge.getCovalentBondOrder(this.order)});
c(c$,"getOtherAtom",function(a){return this.atom1===a?this.atom2:this.atom2===a?this.atom1:null},"JM.Atom");c(c$,"is",function(a){return(this.order&-131073)==a},"~N");j(c$,"getOtherAtomNode",function(a){return this.atom1===a?this.atom2:this.atom2===a?this.atom1:null},"JU.Node");j(c$,"toString",function(){return this.atom1+" - "+this.atom2});c$.myVisibilityFlag=c$.prototype.myVisibilityFlag=JV.JC.getShapeVisibilityFlag(1)}),u("JM"),v(["JM.AtomCollection"],"JM.BondCollection","JU.AU $.BS JM.Bond $.BondIteratorSelected $.HBond JU.BSUtil $.C $.Edge $.Logger".split(" "),
function(){c$=s(function(){this.bo=null;this.bondCount=0;this.molecules=this.freeBonds=this.numCached=null;this.defaultCovalentMad=this.moleculeCount=0;this.bsAromatic=this.bsAromaticDouble=this.bsAromaticSingle=null;this.haveHiddenBonds=!1;p(this,arguments)},JM,"BondCollection",JM.AtomCollection);c(c$,"setupBC",function(){this.bsAromatic=new JU.BS;this.numCached=E(5,0);this.freeBonds=Array(5);for(var a=5;0<--a;)this.freeBonds[a]=Array(200);this.setupAC()});j(c$,"releaseModelSet",function(){this.releaseModelSetBC()});
c(c$,"releaseModelSetBC",function(){this.freeBonds=this.bo=null;this.releaseModelSetAC()});c(c$,"resetMolecules",function(){this.molecules=null;this.moleculeCount=0});c(c$,"getBondIteratorForType",function(a,b){return new JM.BondIteratorSelected(this.bo,this.bondCount,a,b,this.vwr.getBoolean(603979812))},"~N,JU.BS");c(c$,"getBondIterator",function(a){return new JM.BondIteratorSelected(this.bo,this.bondCount,131071,a,!1)},"JU.BS");c(c$,"getBondColix1",function(a){return JU.C.getColixInherited(this.bo[a].colix,
this.bo[a].atom1.colixAtom)},"~N");c(c$,"getBondColix2",function(a){return JU.C.getColixInherited(this.bo[a].colix,this.bo[a].atom2.colixAtom)},"~N");c(c$,"getBondCountInModel",function(a){for(var b=0,d=this.bondCount;0<=--d;)this.bo[d].atom1.mi==a&&b++;return b},"~N");c(c$,"getBondsForSelectedAtoms",function(a,b){for(var d=new JU.BS,c=0;c<this.bondCount;++c){var g=this.bo[c],e=a.get(g.atom1.i),g=a.get(g.atom2.i);((new Boolean(!b&e&g)).valueOf()||(new Boolean(b&(new Boolean(e|g)).valueOf())).valueOf())&&
d.set(c)}return d},"JU.BS,~B");c(c$,"bondAtoms",function(a,b,d,c,g,e,h,l){d=this.getOrAddBond(a,b,d,c,g,e,!0);l&&(d.order|=131072,h&&(a.group=b.group,a.group.addAtoms(a.i)));return d},"JM.Atom,JM.Atom,~N,~N,JU.BS,~N,~B,~B");c(c$,"getOrAddBond",function(a,b,d,c,g,e,h){if(131071==d||65535==d)d=1;a.isBonded(b)?(a=a.getBond(b).index,h&&(this.bo[a].setOrder(d),this.bo[a].setMad(c),q(this.bo[a],JM.HBond)&&(this.bo[a].energy=e))):(this.bondCount==this.bo.length&&(this.bo=JU.AU.arrayCopyObject(this.bo,this.bondCount+
250)),a=this.setBond(this.bondCount++,this.bondMutually(a,b,d,c,e)).index);null!=g&&g.set(a);return this.bo[a]},"JM.Atom,JM.Atom,~N,~N,JU.BS,~N,~B");c(c$,"setBond",function(a,b){return this.bo[b.index=a]=b},"~N,JM.Bond");c(c$,"bondMutually",function(a,b,d,c,g){d=JM.Bond.isOrderH(d)?new JM.HBond(a,b,d,c,0,g):new JM.Bond(a,b,d,c,0);this.addBondToAtom(a,d);this.addBondToAtom(b,d);return d},"JM.Atom,JM.Atom,~N,~N,~N");c(c$,"addBondToAtom",function(a,b){null==a.bonds?(a.bonds=Array(1),a.bonds[0]=b):a.bonds=
this.addToBonds(b,a.bonds)},"JM.Atom,JM.Bond");c(c$,"addToBonds",function(a,b){var d;if(null==b)d=0<this.numCached[1]?this.freeBonds[1][--this.numCached[1]]:Array(1),d[0]=a;else{var c=b.length;d=c+1;d=5>d&&0<this.numCached[d]?this.freeBonds[d][--this.numCached[d]]:Array(d);d[c]=a;for(var g=c;0<=--g;)d[g]=b[g];5>c&&200>this.numCached[c]&&(this.freeBonds[c][this.numCached[c]++]=b)}return d},"JM.Bond,~A");c(c$,"addHBond",function(a,b,d,c){this.bondCount==this.bo.length&&(this.bo=JU.AU.arrayCopyObject(this.bo,
this.bondCount+250));return this.setBond(this.bondCount++,this.bondMutually(a,b,d,1,c)).index},"JM.Atom,JM.Atom,~N,~N");c$.getBondOrderFull=c(c$,"getBondOrderFull",function(a,b,d,c,g){if(0==a||0==b||d<c)return 0;a=a+b+g;return d>a*a?0:1},"~N,~N,~N,~N,~N");c(c$,"deleteAllBonds2",function(){this.vwr.setShapeProperty(1,"reset",null);for(var a=this.bondCount;0<=--a;)this.bo[a].deleteAtomReferences(),this.bo[a]=null;this.bondCount=0});c(c$,"getDefaultMadFromOrder",function(a){return JM.Bond.isOrderH(a)?
1:32768==a?x(Math.floor(2E3*this.vwr.getFloat(570425406))):this.defaultCovalentMad},"~N");c(c$,"deleteConnections",function(a,b,d,c,g,e,h){var l=0>a,j=0>b,n=l||j;a=this.fixD(a,l);b=this.fixD(b,j);var m=new JU.BS,r=0,p=d|=131072;!h&&JM.Bond.isOrderH(d)&&(d=30720);if(e)e=c;else{e=new JU.BS;for(var w=c.nextSetBit(0);0<=w;w=c.nextSetBit(w+1)){var q=this.at[w];if(null!=q.bonds)for(var s=q.bonds.length;0<=--s;)g.get(q.getBondedAtomIndex(s))&&e.set(q.bonds[s].index)}}for(w=e.nextSetBit(0);w<this.bondCount&&
0<=w;w=e.nextSetBit(w+1))if(c=this.bo[w],this.isInRange(c.atom1,c.atom2,a,b,l,j,n)&&(h||p==(c.order&-257|131072)||0!=(d&c.order&30720)))m.set(w),r++;0<r&&this.dBm(m,!1);return[0,r]},"~N,~N,~N,JU.BS,JU.BS,~B,~B");c(c$,"fixD",function(a,b){return b?-a:a*a},"~N,~B");c(c$,"isInRange",function(a,b,d,c,g,e,h){var l=a.distanceSquared(b);return h?(h=Math.sqrt(l),a=a.getBondingRadius()+b.getBondingRadius(),(g?h>=a*d:l>=d)&&(e?h<=a*c:l<=c)):l>=d&&l<=c},"JM.Atom,JM.Atom,~N,~N,~B,~B,~B");c(c$,"dBm",function(a,
b){this.deleteBonds(a,b)},"JU.BS,~B");c(c$,"dBb",function(a,b){var d=a.nextSetBit(0);if(!(0>d)){this.resetMolecules();for(var c=-1,g=a.cardinality(),e=d;e<this.bondCount;++e){var h=this.bo[e];if(0<g&&a.get(e)){g--;if(!b){var l=h.atom1.mi;l!=c&&this.am[c=l].resetBoundCount()}h.deleteAtomReferences()}else this.setBond(d++,h)}for(c=this.bondCount;--c>=d;)this.bo[c]=null;this.bondCount=d;d=this.vwr.getShapeProperty(1,"sets");if(null!=d)for(c=0;c<d.length;c++)JU.BSUtil.deleteBits(d[c],a);JU.BSUtil.deleteBits(this.bsAromatic,
a)}},"JU.BS,~B");c(c$,"resetAromatic",function(){for(var a=this.bondCount;0<=--a;){var b=this.bo[a];b.isAromatic()&&b.setOrder(515)}});c(c$,"assignAromaticBondsBs",function(a,b){a||(this.bsAromatic=new JU.BS);this.bsAromaticSingle=new JU.BS;this.bsAromaticDouble=new JU.BS;for(var d=null==b,c=d?this.bondCount-1:b.nextSetBit(0),g=c;0<=g;g=d?g-1:b.nextSetBit(g+1)){var e=this.bo[g];this.bsAromatic.get(g)&&e.setOrder(515);switch(e.order&-131073){case 515:this.bsAromatic.set(g);break;case 513:this.bsAromaticSingle.set(g);
break;case 514:this.bsAromaticDouble.set(g)}}for(g=c=(d=null==b)?this.bondCount-1:b.nextSetBit(0);0<=g;g=d?g-1:b.nextSetBit(g+1))e=this.bo[g],e.is(515)&&(!this.bsAromaticDouble.get(g)&&!this.bsAromaticSingle.get(g))&&(this.assignAromaticDouble(e)||this.assignAromaticSingle(e));for(g=c;0<=g;g=d?g-1:b.nextSetBit(g+1))if(e=this.bo[g],this.bsAromaticDouble.get(g))e.is(514)||(this.bsAromatic.set(g),e.setOrder(514));else if((this.bsAromaticSingle.get(g)||e.isAromatic())&&!e.is(513))this.bsAromatic.set(g),
e.setOrder(513);this.assignAromaticNandO(b);this.bsAromaticDouble=this.bsAromaticSingle=null},"~B,JU.BS");c(c$,"assignAromaticDouble",function(a){var b=a.index;if(this.bsAromaticSingle.get(b))return!1;if(this.bsAromaticDouble.get(b))return!0;this.bsAromaticDouble.set(b);return!this.assignAromaticSingleForAtom(a.atom1,b)||!this.assignAromaticSingleForAtom(a.atom2,b)?(this.bsAromaticDouble.clear(b),!1):!0},"JM.Bond");c(c$,"assignAromaticSingle",function(a){var b=a.index;if(this.bsAromaticDouble.get(b))return!1;
if(this.bsAromaticSingle.get(b))return!0;this.bsAromaticSingle.set(b);return!this.assignAromaticDoubleForAtom(a.atom1)||!this.assignAromaticDoubleForAtom(a.atom2)?(this.bsAromaticSingle.clear(b),!1):!0},"JM.Bond");c(c$,"assignAromaticSingleForAtom",function(a,b){var d=a.bonds;if(null==d||this.assignAromaticSingleHetero(a))return!1;for(var c=d.length;0<=--c;){var g=d[c],e=g.index;if(!(e==b||!g.isAromatic()||this.bsAromaticSingle.get(e)))if(this.bsAromaticDouble.get(e)||!this.assignAromaticSingle(g))return!1}return!0},
"JM.Atom,~N");c(c$,"assignAromaticDoubleForAtom",function(a){var b=a.bonds;if(null==b)return!1;a=this.assignAromaticSingleHetero(a);for(var d=-1,c=b.length;0<=--c;)this.bsAromaticDouble.get(b[c].index)&&(a=!0),b[c].isAromatic()&&(d=c);for(c=b.length;0<=--c;){var g=b[c],e=g.index;if(g.isAromatic()&&!this.bsAromaticDouble.get(e)&&!this.bsAromaticSingle.get(e))if(!a&&this.assignAromaticDouble(g))a=!0;else if((a||c<d)&&!this.assignAromaticSingle(g))return!1}return a},"JM.Atom");c(c$,"assignAromaticSingleHetero",
function(a){var b=a.getElementNumber();switch(b){case 6:case 7:case 8:case 16:break;default:return!0}var d=a.getValence();switch(b){case 6:return 4==d;case 7:case 8:return d==10-b&&1>a.getFormalCharge();case 16:return d==18-b&&1>a.getFormalCharge()}return!1},"JM.Atom");c(c$,"assignAromaticNandO",function(a){for(var b,d=null==a,c=d?this.bondCount-1:a.nextSetBit(0);0<=c;c=d?c-1:a.nextSetBit(c+1))if(b=this.bo[c],b.is(513)){var g,e=b.atom2,h,l=e.getElementNumber();7==l||8==l?(h=l,g=e,e=b.atom1,l=e.getElementNumber()):
(g=b.atom1,h=g.getElementNumber());if(!(7!=h&&8!=h)){var j=g.getValence();if(!(0>j)){var n=g.getCovalentBondCount();g=g.getFormalCharge();switch(h){case 7:3==j&&(3==n&&1>g&&6==l&&3==e.getValence())&&b.setOrder(514);break;case 8:1==j&&(0==g&&(14==l||16==l))&&b.setOrder(514)}}}}},"JU.BS");c(c$,"getAtomBitsMDb",function(a,b){var d;switch(a){default:return this.getAtomBitsMDa(a,b);case 1678770178:d=new JU.BS;for(var c=b.nextSetBit(0);0<=c;c=b.nextSetBit(c+1))d.set(this.bo[c].atom1.i),d.set(this.bo[c].atom2.i);
return d;case 1048585:d=new JU.BS;for(c=this.bondCount;0<=--c;)this.bo[c].isAromatic()&&(d.set(this.bo[c].atom1.i),d.set(this.bo[c].atom2.i));return d}},"~N,~O");c(c$,"setBondOrder",function(a,b){var d=b.charCodeAt(0)-48,c=this.bo[a];switch(b){case "0":case "1":case "2":case "3":break;case "p":case "m":d=JU.Edge.getBondOrderNumberFromOrder(c.getCovalentOrder()).charCodeAt(0)-48+("p"==b?1:-1);3<d?d=1:0>d&&(d=3);break;default:return null}var g=new JU.BS;try{if(0==d){var e=new JU.BS;e.set(c.index);g.set(c.atom1.i);
g.set(c.atom2.i);this.dBm(e,!1);return g}c.setOrder(d|131072);this.removeUnnecessaryBonds(c.atom1,!1);this.removeUnnecessaryBonds(c.atom2,!1);g.set(c.atom1.i);g.set(c.atom2.i)}catch(h){if(B(h,Exception))JU.Logger.error("Exception in seBondOrder: "+h.toString());else throw h;}return g},"~N,~S");c(c$,"removeUnnecessaryBonds",function(a,b){var d=new JU.BS,c=new JU.BS,g=a.bonds;if(null!=g){for(var e=0;e<g.length;e++)g[e].isCovalent()?1==g[e].getOtherAtom(a).getElementNumber()&&d.set(g[e].getOtherAtom(a).i):
c.set(g[e].index);0<=c.nextSetBit(0)&&this.dBm(c,!1);b&&d.set(a.i);0<=d.nextSetBit(0)&&this.vwr.deleteAtoms(d,!1)}},"JM.Atom,~B");c(c$,"displayBonds",function(a,b){b||(this.haveHiddenBonds=!0);for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1))d<this.bondCount&&0!=this.bo[d].mad&&this.bo[d].setShapeVisibility(b)},"JM.BondSet,~B");C(c$,"BOND_GROWTH_INCREMENT",250,"MAX_BONDS_LENGTH_TO_CACHE",5,"MAX_NUM_TO_CACHE",200)}),u("JM"),H(JM,"BondIterator"),u("JM"),v(["JM.BondIterator"],"JM.BondIteratorSelected",
null,function(){c$=s(function(){this.bonds=null;this.iBond=this.bondType=this.bondCount=0;this.bsSelected=null;this.bondSelectionModeOr=!1;p(this,arguments)},JM,"BondIteratorSelected",null,JM.BondIterator);t(c$,function(a,b,d,c,g){this.bonds=a;this.bondCount=b;this.bondType=d;this.bsSelected=c;this.bondSelectionModeOr=g},"~A,~N,~N,JU.BS,~B");j(c$,"hasNext",function(){if(131071==this.bondType)return this.iBond=this.bsSelected.nextSetBit(this.iBond),0<=this.iBond&&this.iBond<this.bondCount;for(;this.iBond<
this.bondCount;++this.iBond){var a=this.bonds[this.iBond];if(!(65535!=this.bondType&&0==(a.order&this.bondType))&&!(65535==this.bondType&&32768!=a.order)){var b=this.bsSelected.get(a.atom1.i),a=this.bsSelected.get(a.atom2.i);if(!this.bondSelectionModeOr&&b&&a||this.bondSelectionModeOr&&(b||a))return!0}}return!1});j(c$,"nextIndex",function(){return this.iBond});j(c$,"next",function(){return this.bonds[this.iBond++]})}),u("JM"),v(["JU.BS"],"JM.BondSet",["JU.BSUtil"],function(){c$=s(function(){this.associatedAtoms=
null;p(this,arguments)},JM,"BondSet",JU.BS);t(c$,function(){K(this,JM.BondSet,[])});c$.newBS=c(c$,"newBS",function(a,b){var d=new JM.BondSet;JU.BSUtil.copy2(a,d);d.associatedAtoms=b;return d},"JU.BS,~A")}),u("JM"),c$=s(function(){this.model=null;this.index=this.chainID=0;this.isRna=this.isDna=!1;this.groupCount=0;this.groups=null;this.selectedGroupCount=0;p(this,arguments)},JM,"Chain"),c(c$,"getAtom",function(a){return this.model.ms.at[a]},"~N"),t(c$,function(a,b,d){this.model=a;this.chainID=b;this.index=
d;this.groups=Array(16)},"JM.Model,~N,~N"),c(c$,"calcSelectedGroupsCount",function(a){for(var b=this.selectedGroupCount=0;b<this.groupCount;b++)this.groups[b].selectedIndex=this.groups[b].isSelected(a)?this.selectedGroupCount++:-1},"JU.BS"),c(c$,"selectSeqcodeRange",function(a,b,d,c){var g,e,h,l=!1;for(e=a;e<this.groupCount&&this.groups[e].seqcode!=b;e++);if(e==this.groupCount){if(0<a)return-1;l=!0;h=2147483647;for(var j=this.groupCount;0<=--j;)if((g=this.groups[j].seqcode)>b&&g-b<h)e=j,h=g-b;if(2147483647==
h)return-1}if(2147483647==d)b=this.groupCount-1,l=!0;else{for(b=e;b<this.groupCount&&this.groups[b].seqcode!=d;b++);if(b==this.groupCount){if(0<a)return-1;l=!0;h=2147483647;for(j=e;j<this.groupCount;j++)if((g=this.groups[j].seqcode)<d&&d-g<h)b=j,h=d-g;if(2147483647==h)return-1}}for(j=e;j<=b;++j)this.groups[j].selectAtoms(c);return l?-1:b+1},"~N,~N,~N,JU.BS"),c(c$,"fixIndices",function(a,b){for(var d=0;d<this.groupCount;d++)this.groups[d].fixIndices(a,b)},"~N,JU.BS"),c(c$,"setAtomBitSet",function(a){for(var b=
0;b<this.groupCount;b++)this.groups[b].selectAtoms(a)},"JU.BS"),c(c$,"getIDStr",function(){return 0==this.chainID?"":256>this.chainID?""+String.fromCharCode(this.chainID):this.model.ms.vwr.chainMap.get(Integer.$valueOf(this.chainID))}),u("JM"),v(["java.lang.Short","java.util.Hashtable","JV.JC"],"JM.Group","JU.BS $.Quat J.c.STR JU.BSUtil $.Escape $.Logger".split(" "),function(){c$=s(function(){this.groupIndex=0;this.group1="\x00";this.chain=null;this.leadAtomIndex=this.firstAtomIndex=-1;this.shapeVisibilityFlags=
this.selectedIndex=this.groupID=this.seqcode=this.lastAtomIndex=0;this.bsAdded=null;p(this,arguments)},JM,"Group");t(c$,function(){});c(c$,"setGroup",function(a,b,d,c,g){this.chain=a;this.seqcode=d;this.firstAtomIndex=c;this.lastAtomIndex=g;null!=b&&0<b.length&&this.setGroupID(b);return this},"JM.Chain,~S,~N,~N,~N");c(c$,"setGroupID",function(){},"~S");c(c$,"setShapeVisibility",function(a,b){this.shapeVisibilityFlags=b?this.shapeVisibilityFlags|a:this.shapeVisibilityFlags&~a},"~N,~B");c(c$,"getGroup3",
function(){return 1>this.groupID?"":JM.Group.group3Names[this.groupID]});c(c$,"getGroup1",function(){return"?"});c(c$,"getBioPolymerLength",function(){return 0});c(c$,"getMonomerIndex",function(){return-1});c(c$,"getGroups",function(){return null});c(c$,"getStructure",function(){return null});c(c$,"getStrucNo",function(){return 0});c(c$,"getProteinStructureType",function(){return J.c.STR.NOT});c(c$,"getProteinStructureSubType",function(){return this.getProteinStructureType()});c(c$,"setProteinStructureType",
function(){return-1},"J.c.STR,~N");c(c$,"isProtein",function(){return!1});c(c$,"isNucleic",function(){return!1});c(c$,"isDna",function(){return!1});c(c$,"isRna",function(){return!1});c(c$,"isPurine",function(){return!1});c(c$,"isPyrimidine",function(){return!1});c(c$,"isCarbohydrate",function(){return!1});c(c$,"getResno",function(){return-2147483648==this.seqcode?0:this.seqcode>>8});c$.getSeqNumberFor=c(c$,"getSeqNumberFor",function(a){return JM.Group.haveSequenceNumber(a)?a>>8:2147483647},"~N");
c$.haveSequenceNumber=c(c$,"haveSequenceNumber",function(a){return 0!=(a&128)},"~N");c(c$,"getSeqcodeString",function(){return JM.Group.getSeqcodeStringFor(this.seqcode)});c$.getSeqcodeFor=c(c$,"getSeqcodeFor",function(a,b){if(-2147483648==a)return a;"A"<=b&&"Z">=b||("a"<=b&&"z">=b||"0"<=b&&"9">=b||"?"==b||"*"==b)||(" "!=b&&"\x00"!=b&&JU.Logger.warn("unrecognized insertionCode:"+b),b="\x00");return(2147483647==a?0:a<<8|128)+b.charCodeAt(0)},"~N,~S");c$.getSeqcodeStringFor=c(c$,"getSeqcodeStringFor",
function(a){return-2147483648==a?null:0==(a&127)?""+(a>>8):""+(a>>8)+"^"+String.fromCharCode(a&127)},"~N");c(c$,"getInsertionCode",function(){return-2147483648==this.seqcode?"\x00":String.fromCharCode(this.seqcode&127)});c$.getInsertionCodeFor=c(c$,"getInsertionCodeFor",function(a){return a&127},"~N");c$.getInsertionCodeChar=c(c$,"getInsertionCodeChar",function(a){return-2147483648==a?"\x00":String.fromCharCode(a&127)},"~N");c(c$,"isAdded",function(a){return null!=this.bsAdded&&this.bsAdded.get(a)},
"~N");c(c$,"addAtoms",function(a){null==this.bsAdded&&(this.bsAdded=new JU.BS);this.bsAdded.set(a)},"~N");c(c$,"selectAtoms",function(a){a.setBits(this.firstAtomIndex,this.lastAtomIndex+1);null!=this.bsAdded&&a.or(this.bsAdded);return this.lastAtomIndex},"JU.BS");c(c$,"isSelected",function(a){var b=a.nextSetBit(this.firstAtomIndex);return 0<=b&&b<=this.lastAtomIndex||null!=this.bsAdded&&this.bsAdded.intersects(a)},"JU.BS");c(c$,"isHetero",function(){return this.chain.getAtom(this.firstAtomIndex).isHetero()});
j(c$,"toString",function(){return"["+this.getGroup3()+"-"+this.getSeqcodeString()+"]"});c(c$,"scaleToScreen",function(a,b){return this.chain.model.ms.vwr.tm.scaleToScreen(a,b)},"~N,~N");c(c$,"isCursorOnTopOf",function(a,b,d,c,g){return this.chain.model.ms.isCursorOnTopOf(a,b,d,c,g)},"JM.Atom,~N,~N,~N,JM.Atom");c(c$,"getModel",function(){return this.chain.model});c(c$,"getModelIndex",function(){return this.chain.model.modelIndex});c(c$,"getSelectedMonomerCount",function(){return 0});c(c$,"getSelectedMonomerIndex",
function(){return-1});c(c$,"getSelectedGroupIndex",function(){return this.selectedIndex});c(c$,"isLeadAtom",function(){return!1},"~N");c(c$,"getLeadAtomOr",function(a){var b=this.getLeadAtom();return null==b?a:b},"JM.Atom");c(c$,"getLeadAtom",function(){return null});c(c$,"getQuaternion",function(){return null},"~S");c(c$,"getQuaternionFrame",function(a){if(3>this.lastAtomIndex-this.firstAtomIndex)return null;var b=this.firstAtomIndex;return JU.Quat.getQuaternionFrame(a[b],a[++b],a[++b])},"~A");c(c$,
"setStrucNo",function(){},"~N");c(c$,"getHelixData",function(a){return JU.Escape.escapeHelical(null,a,null,null,null)},"~N,~S,~N");c(c$,"isWithinStructure",function(){return!1},"J.c.STR");c(c$,"getProteinStructureTag",function(){return null});c(c$,"getStructureId",function(){return""});c(c$,"getBioPolymerIndexInModel",function(){return-1});c(c$,"isCrossLinked",function(){return!1},"JM.Group");c(c$,"getCrossLinkLead",function(){return!1},"JU.Lst");c(c$,"isConnectedPrevious",function(){return!1});c(c$,
"getNitrogenAtom",function(){return null});c(c$,"getCarbonylOxygenAtom",function(){return null});c(c$,"fixIndices",function(a,b){this.firstAtomIndex-=a;this.leadAtomIndex-=a;this.lastAtomIndex-=a;null!=this.bsAdded&&JU.BSUtil.deleteBits(this.bsAdded,b)},"~N,JU.BS");c(c$,"getGroupInfo",function(a,b){var d=new java.util.Hashtable;d.put("groupIndex",Integer.$valueOf(a));d.put("groupID",Short.$valueOf(this.groupID));var c=this.getSeqcodeString();null!=c&&d.put("seqCode",c);d.put("_apt1",Integer.$valueOf(this.firstAtomIndex));
d.put("_apt2",Integer.$valueOf(this.lastAtomIndex));null!=this.bsAdded&&d.put("addedAtoms",this.bsAdded);d.put("atomInfo1",this.chain.model.ms.getAtomInfo(this.firstAtomIndex,null,b));d.put("atomInfo2",this.chain.model.ms.getAtomInfo(this.lastAtomIndex,null,b));d.put("visibilityFlags",Integer.$valueOf(this.shapeVisibilityFlags));return d},"~N,JU.P3");c(c$,"getMinZ",function(a,b){b[0]=2147483647;for(var d=this.firstAtomIndex;d<=this.lastAtomIndex;d++)this.checkMinZ(a[d],b);if(null!=this.bsAdded)for(d=
this.bsAdded.nextSetBit(0);0<=d;d=this.bsAdded.nextSetBit(d+1))this.checkMinZ(a[d],b)},"~A,~A");c(c$,"checkMinZ",function(a,b){var d=a.sZ-x(a.sD/2)-2;d<b[0]&&(b[0]=Math.max(1,d))},"JM.Atom,~A");c(c$,"getGroupParameter",function(){return NaN},"~N");c(c$,"getAtomIndex",function(){return-1},"~S,~N");c(c$,"getBSSideChain",function(){return new JU.BS});C(c$,"SEQUENCE_NUMBER_FLAG",128,"INSERTION_CODE_MASK",127,"SEQUENCE_NUMBER_SHIFT",8);c$.htGroup=c$.prototype.htGroup=new java.util.Hashtable;C(c$,"standardGroupList",
null);c$.group3Names=c$.prototype.group3Names=Array(128);C(c$,"specialAtomNames",null)}),u("JM"),v(["JM.Bond"],"JM.HBond",["JU.Logger"],function(){c$=s(function(){this.energy=0;p(this,arguments)},JM,"HBond",JM.Bond);t(c$,function(a,b,d,c,g,e){K(this,JM.HBond,[a,b,d,c,g]);this.energy=e;JU.Logger.debugging&&JU.Logger.debug("HBond energy = "+e+" #"+this.getIdentity())},"JM.Atom,JM.Atom,~N,~N,~N,~N");c(c$,"getEnergy",function(){return this.energy});c$.getEnergy=c(c$,"getEnergy",function(a,b,d,c){return Math.round(-27888/
a- -27888/c+-27888/d- -27888/b)},"~N,~N,~N,~N");C(c$,"QConst",-27888)}),u("JM"),v(null,"JM.LabelToken","java.lang.Float java.util.Hashtable JU.Lst $.PT $.SB $.T3 JS.SV $.T JU.Edge".split(" "),function(){c$=s(function(){this.data=this.key=this.text=null;this.tok=0;this.pt=-1;this.ch1="\x00";this.width=0;this.precision=2147483647;this.intAsFloat=this.zeroPad=this.alignLeft=!1;p(this,arguments)},JM,"LabelToken");t(c$,function(){});c(c$,"set",function(a,b){this.text=a;this.pt=b;return this},"~S,~N");
c$.isLabelPropertyTok=c(c$,"isLabelPropertyTok",function(a){for(var b=JM.LabelToken.labelTokenIds.length;0<=--b;)if(JM.LabelToken.labelTokenIds[b]==a)return!0;return!1},"~N");c$.compile=c(c$,"compile",function(a,b,d,c){if(null==b||0==b.length)return null;if(0>b.indexOf("%")||2>b.length)return[(new JM.LabelToken).set(b,-1)];for(var g=0,e=-1,h=b.length;++e<h&&0<=(e=b.indexOf("%",e));)g++;for(var g=Array(2*g+1),l,j=0,e=0;0<=(l=b.indexOf("%",e));)e!=l&&(g[j++]=(new JM.LabelToken).set(b.substring(e,l),
-1)),e=g[j++]=(new JM.LabelToken).set(null,l),a.autoCalculate(e.tok),e=JM.LabelToken.setToken(a,b,e,h,d.charCodeAt(0),c);e<h&&(g[j++]=(new JM.LabelToken).set(b.substring(e),-1));return g},"JV.Viewer,~S,~S,java.util.Map");c(c$,"formatLabel",function(a,b,d,c){return null==d||0==d.length?null:JM.LabelToken.formatLabelAtomArray(a,b,JM.LabelToken.compile(a,d,"\x00",null),"\x00",null,c)},"JV.Viewer,JM.Atom,~S,JU.P3");c$.formatLabelAtomArray=c(c$,"formatLabelAtomArray",function(a,b,d,c,g,e){if(null==b)return null;
var h="0"<c?null:new JU.SB;if(null!=d)for(var l=0;l<d.length;l++){var j=d[l];if(null==j)break;"0"<c&&j.ch1!=c||(0>=j.tok||null!=j.key?null!=h&&(h.append(j.text),"\x00"!=j.ch1&&h.appendC(j.ch1)):JM.LabelToken.appendAtomTokenValue(a,b,j,h,g,e))}return null==h?null:h.toString().intern()},"JV.Viewer,JM.Atom,~A,~S,~A,JU.P3");c$.getBondLabelValues=c(c$,"getBondLabelValues",function(){var a=new java.util.Hashtable;a.put("#","");a.put("ORDER","");a.put("TYPE","");a.put("LENGTH",Float.$valueOf(0));a.put("ENERGY",
Float.$valueOf(0));return a});c$.formatLabelBond=c(c$,"formatLabelBond",function(a,b,d,c,g,e){c.put("#",""+(b.index+1));c.put("ORDER",""+JU.Edge.getBondOrderNumberFromOrder(b.order));c.put("TYPE",JU.Edge.getBondOrderNameFromOrder(b.order));c.put("LENGTH",Float.$valueOf(b.atom1.distance(b.atom2)));c.put("ENERGY",Float.$valueOf(b.getEnergy()));JM.LabelToken.setValues(d,c);JM.LabelToken.formatLabelAtomArray(a,b.atom1,d,"1",g,e);JM.LabelToken.formatLabelAtomArray(a,b.atom2,d,"2",g,e);return JM.LabelToken.getLabel(d)},
"JV.Viewer,JM.Bond,~A,java.util.Map,~A,JU.P3");c$.formatLabelMeasure=c(c$,"formatLabelMeasure",function(a,b,d,c,g){var e=new java.util.Hashtable;e.put("#",""+(b.index+1));e.put("VALUE",Float.$valueOf(c));e.put("UNITS",g);d=JM.LabelToken.compile(a,d,"\u0001",e);if(null==d)return"";JM.LabelToken.setValues(d,e);e=b.ms.at;b=b.countPlusIndices;for(c=b[0];1<=c;--c)0<=b[c]&&JM.LabelToken.formatLabelAtomArray(a,e[b[c]],d,String.fromCharCode(48+c),null,null);d=JM.LabelToken.getLabel(d);return null==d?"":d},
"JV.Viewer,JM.Measurement,~S,~N,~S");c$.setValues=c(c$,"setValues",function(a,b){for(var d=0;d<a.length;d++){var c=a[d];if(null==c)break;if(null!=c.key){var g=b.get(c.key);c.text=q(g,Float)?c.format(g.floatValue(),null,null):c.format(NaN,g,null)}}},"~A,java.util.Map");c$.getLabel=c(c$,"getLabel",function(a){for(var b=new JU.SB,d=0;d<a.length;d++){var c=a[d];if(null==c)break;b.append(c.text)}return b.toString()},"~A");c$.setToken=c(c$,"setToken",function(a,b,d,c,g,e){var h=d.pt+1;if(h>=c)return h;
var l;"-"==b.charAt(h)&&(d.alignLeft=!0,++h);h<c&&"0"==b.charAt(h)&&(d.zeroPad=!0,++h);for(;h<c&&JU.PT.isDigit(l=b.charAt(h));)d.width=10*d.width+(l.charCodeAt(0)-48),++h;d.precision=2147483647;var j=!1;if(h<c&&"."==b.charAt(h)){++h;if(h<c&&"-"==(l=b.charAt(h)))j=!0,++h;if(h<c&&JU.PT.isDigit(l=b.charAt(h)))d.precision=l.charCodeAt(0)-48,j&&(d.precision=-1-d.precision),++h}if(h<c&&null!=e){var n;for(e=e.keySet().iterator();e.hasNext()&&((n=e.next())||1);)if(b.indexOf(n)==h)return h+(d.key=n).length}if(h<
c)switch(l=b.charAt(h++)){case "%":return d.text="%",h;case "[":n=b.indexOf("]",h);if(n<h){h=c;break}h=b.substring(h,n).toLowerCase();h.startsWith("property_")?(d.tok=135270408,d.data=a.getDataFloat(h)):h.startsWith("validation.")?(d.tok=1073742189,d.data=a.getDataFloat("property_"+h.substring(11))):(a=JS.T.getTokenFromName(h),null!=a&&JM.LabelToken.isLabelPropertyTok(a.tok)&&(d.tok=a.tok));h=n+1;break;case "{":n=b.indexOf("}",h);if(n<h){h=c;break}h=b.substring(h,n);d.data=a.getDataFloat(h);null==
d.data?(d.data=a.getData(h),q(d.data,Array)&&(d.data=d.data[1],q(d.data,String)&&(d.data=JU.PT.split(d.data,"\n")),JU.PT.isAS(d.data)||(d.data=null)),null==d.data?(d.tok=1716520985,d.data=h):d.tok=135266306):d.tok=135270408;h=n+1;break;default:var m,r;if(h<c&&0<=(m="fuv".indexOf(l))&&0<=(r="xyz".indexOf(b.charAt(h))))d.tok=JM.LabelToken.twoCharLabelTokenIds[3*m+r],h++;else if(0<=(m="AaBbCcDEefGgIiLlMmNnOoPpQqRrSsTtUuVvWXxxYyyZzz%%%gqW".indexOf(l)))d.tok=JM.LabelToken.labelTokenIds[m]}d.text=b.substring(d.pt,
h);if(h<c&&0!=g&&JU.PT.isDigit(l=b.charAt(h)))h++,d.ch1=l,l.charCodeAt(0)!=g&&1!=g&&(d.tok=0);return h},"JV.Viewer,~S,JM.LabelToken,~N,~N,java.util.Map");c$.appendAtomTokenValue=c(c$,"appendAtomTokenValue",function(a,b,d,c,g,e){var h=null,l=NaN,j=null;try{switch(d.tok){case 1095761923:h=""+(null==g?b.i:g[b.i]);break;case 1766856708:j=b.atomPropertyTuple(a,d.tok,e);break;case 135270408:case 1073742189:if(null!=d.data&&(l=d.data[b.i],1073742189==d.tok&&1!=l&&0!=l)){var n=a.getAtomValidation(d.text.substring(13,
d.text.length-1),b);if(null==n)System.out.println("?? o is null ??");else if(1==n.size())l=n.get(0).floatValue();else{l=NaN;h="";a=0;for(var m=n.size();a<m;a++)h+=","+n.get(a);1<h.length&&(h=h.substring(1))}}break;case 1716520985:var r=a.ms.getInfo(b.mi,d.data),p=b.i-a.ms.am[b.mi].firstAtomIndex,n=null;if(0<=p)if(q(r,Array))var w=r,n=p<w.length?w[p]:null;else q(r,JU.Lst)&&(n=p<r.size()?JS.SV.oValue(r.get(p)):null);null==n?h="":q(n,Float)?l=n.floatValue():q(n,Integer)?l=n.intValue():q(n,JU.T3)?j=n:
h=n.toString();break;case 135266306:null!=d.data&&(w=d.data,h=b.i<w.length?w[b.i]:"");break;case 1632634891:var s=b.getFormalCharge(),h=0<s?""+s+"+":0>s?""+-s+"-":"";break;case "g":h=""+b.getSelectedGroupIndexWithinChain();break;case 1095766030:h=b.getModelNumberForLabel();break;case "O":h=b.getSymmetryOperatorList(!1);break;case 1129318401:h=""+b.atomPropertyInt(d.tok);break;case "Q":l=b.getOccupancy100()/100;break;case 1666189314:l=b.atomPropertyFloat(a,d.tok,e);break;case "r":h=b.getSeqcodeString();
break;case 1087373324:h=b.getStructureId();break;case 1095761942:var t=b.getStrucNo(),h=0>=t?"":""+t;break;case 1112539150:if(Float.isNaN(l=b.getGroupParameter(1112539150)))h="null";break;case 1112541202:case 1112541203:case 1112541204:case 1112539159:case 1112539160:case 1112539161:case 1112539162:l=b.atomPropertyFloat(a,d.tok,e);Float.isNaN(l)&&(h="");break;case 1641025539:case 1238369286:h=b.atomPropertyString(a,d.tok);break;case "W":h=b.getIdentityXYZ(!1,e);break;default:switch(d.tok&1137704960){case 1095761920:d.intAsFloat?
l=b.atomPropertyInt(d.tok):h=""+b.atomPropertyInt(d.tok);break;case 1112539136:l=b.atomPropertyFloat(a,d.tok,e);break;case 1087373312:h=b.atomPropertyString(a,d.tok);break;case 1078984704:j=b.atomPropertyTuple(a,d.tok,e),null==j&&(h="")}}}catch(u){if(B(u,IndexOutOfBoundsException))l=NaN,j=h=null;else throw u;}h=d.format(l,h,j);null==c?d.text=h:c.append(h)},"JV.Viewer,JM.Atom,JM.LabelToken,JU.SB,~A,JU.P3");c(c$,"format",function(a,b,d){return Float.isNaN(a)?null!=b?JU.PT.formatS(b,this.width,this.precision,
this.alignLeft,this.zeroPad):null!=d?(0==this.width&&2147483647==this.precision&&(this.width=6,this.precision=2),JU.PT.formatF(d.x,this.width,this.precision,!1,!1)+JU.PT.formatF(d.y,this.width,this.precision,!1,!1)+JU.PT.formatF(d.z,this.width,this.precision,!1,!1)):this.text:JU.PT.formatF(a,this.width,this.precision,this.alignLeft,this.zeroPad)},"~N,~S,JU.T3");C(c$,"labelTokenParams","AaBbCcDEefGgIiLlMmNnOoPpQqRrSsTtUuVvWXxxYyyZzz%%%gqW","labelTokenIds",[1087373315,1087375362,1087375361,1112541196,
1632634891,1087373316,1095761923,1087373322,1087375365,1112539145,1095761933,"g",1112541194,1095763969,1095761938,1095763978,1095766030,1087373319,1095761936,1087373318,"O",1089470478,1112541195,1112539146,"Q",1129318401,1095761939,"r",1095761941,1087373316,1112539150,1112541196,1087373321,1112539151,1649412120,1146095631,"W",1112541188,1112541185,1112541205,1112541189,1112541186,1112541206,1112541190,1112541187,1112541207,1115297793,1113200642,1113198595,1113198596,1113198597,1113200646,1113200647,
1113200649,1113200650,1113200652,1650071565,1113200654,1112539137,1112539138,1095761922,1095761924,1766856708,1095761932,1112539140,1229984263,1288701959,1826248716,1112539143,1095761935,1112539141,1112539144,1095761937,1716520985,1666189314,1114638363,1087373323,1087373320,1113200651,1641025539,1238369286,1095761942,1087373324,1087375373,1112539152,1112539153,1112539154,1112539155,1095763991,1649410049,1112541202,1112541203,1112541204,1313866249,1146093582,1146095627,1146095626,1146095629,1112541191,
1112541192,1112541193,1114638362,1112539147,1112539148,1112539149,1146095628,1112539142,1112539139,1095761927,1095761940,1112539159,1112539160,1112539161,1112539162,1146093584,1297090050],"STANDARD_LABEL","%[identify]","twoCharLabelTokenParams","fuv","twoCharLabelTokenIds",[1112541188,1112541189,1112541190,1112539153,1112539154,1112539155,1112541202,1112541203,1112541204])}),u("JM"),v(null,"JM.Measurement","java.lang.Float JU.Lst $.Measure $.PT $.SB J.atomdata.RadiusData J.c.VDW JM.LabelToken JU.Escape".split(" "),
function(){c$=s(function(){this.ms=this.thisID=null;this.index=0;this.isVisible=!0;this.isTrajectory=this.isHidden=!1;this.$isValid=!0;this.colix=0;this.labelColix=-1;this.mad=0;this.tickInfo=null;this.traceX=-2147483648;this.count=this.traceY=0;this.pts=this.countPlusIndices=null;this.value=0;this.type=this.strMeasurement=this.vwr=this.text=this.strFormat=null;this.tainted=!1;this.renderArc=this.renderAxis=null;p(this,arguments)},JM,"Measurement");N(c$,function(){this.countPlusIndices=E(5,0)});c(c$,
"isTainted",function(){return this.tainted&&!(this.tainted=!1)});c(c$,"setM",function(a,b,d,c,g,e){this.ms=a;this.index=e;this.vwr=a.vwr;this.colix=c;this.strFormat=g;null!=b&&(this.tickInfo=b.tickInfo,this.pts=b.pts,this.mad=b.mad,this.thisID=b.thisID,this.text=b.text,null!=this.thisID&&null!=this.text&&(this.labelColix=this.text.colix));null==this.pts&&(this.pts=Array(4));b=null==b?null:b.countPlusIndices;this.count=null==b?0:b[0];0<this.count&&(System.arraycopy(b,0,this.countPlusIndices,0,this.count+
1),this.isTrajectory=a.isTrajectoryMeasurement(this.countPlusIndices));this.value=Float.isNaN(d)||this.isTrajectory?this.getMeasurement(null):d;this.formatMeasurement(null);return this},"JM.ModelSet,JM.Measurement,~N,~N,~S,~N");c(c$,"setPoints",function(a,b,d,c){this.ms=a;this.countPlusIndices=b;this.count=b[0];this.pts=null==d?Array(4):d;this.vwr=a.vwr;this.tickInfo=c;return this},"JM.ModelSet,~A,~A,JM.TickInfo");c(c$,"setCount",function(a){this.setCountM(a)},"~N");c(c$,"setCountM",function(a){this.count=
this.countPlusIndices[0]=a},"~N");c(c$,"getAtomIndex",function(a){return 0<a&&a<=this.count?this.countPlusIndices[a]:-1},"~N");c(c$,"getAtom",function(a){a=this.countPlusIndices[a];return-1>a?this.pts[-2-a]:this.ms.at[a]},"~N");c(c$,"getLastIndex",function(){return 0<this.count?this.countPlusIndices[this.count]:-1});c(c$,"getString",function(){return this.strMeasurement});c(c$,"getStringUsing",function(a,b,d){this.vwr=a;this.value=this.getMeasurement(null);this.formatMeasurementAs(b,d,!0);return null==
b?this.getInfoAsString(d):this.strMeasurement},"JV.Viewer,~S,~S");c(c$,"getStringDetail",function(){return(2==this.count?"Distance":3==this.count?"Angle":"Torsion")+this.getMeasurementScript(" - ",!1)+" : "+this.value});c(c$,"refresh",function(a){this.value=this.getMeasurement(a);this.isTrajectory=this.ms.isTrajectoryMeasurement(this.countPlusIndices);this.formatMeasurement(null)},"~A");c(c$,"getMeasurementScript",function(a,b){for(var d="",c=a.equals(" "),g=1;g<=this.count;g++)d+=(1<g?a:" ")+this.getLabel(g,
c,b);return d},"~S,~B");c(c$,"formatMeasurementAs",function(a,b,d){null!=a&&0==a.length&&(a=null);if(d||!(null!=a&&0!=a.indexOf(this.countPlusIndices[0]+":")))this.strFormat=a,this.formatMeasurement(b)},"~S,~S,~B");c(c$,"formatMeasurement",function(a){this.tainted=!0;switch(Float.isNaN(this.value)?0:this.count){default:this.strMeasurement=null;break;case 2:this.strMeasurement=this.formatDistance(a);break;case 3:case 4:this.strMeasurement=this.formatAngle(this.value)}},"~S");c(c$,"reformatDistanceIfSelected",
function(){2==this.count&&this.vwr.slm.isSelected(this.countPlusIndices[1])&&this.vwr.slm.isSelected(this.countPlusIndices[2])&&this.formatMeasurement(null)});c(c$,"formatDistance",function(a){var b=this.getLabelString();if(null==b)return"";if(null==a){var d=this.strFormat.indexOf("//");a=0<=d?this.strFormat.substring(d+2):null;null==a&&(a=this.vwr.g.measureDistanceUnits,this.strFormat+="//"+a)}a=JM.Measurement.fixUnits(a);d=b.indexOf("//");0<=d&&(b=b.substring(0,d),0==b.length&&(b="%VALUE"));d=this.fixValue(a,
0<=b.indexOf("%V"));return this.formatString(d,a,b)},"~S");c$.fixUnits=c(c$,"fixUnits",function(a){return a.equals("nanometers")?"nm":a.equals("picometers")?"pm":a.equals("angstroms")?"\u00c5":a.equals("vanderwaals")||a.equals("vdw")?"%":a},"~S");c(c$,"fixValue",function(a,b){if(2!=this.count)return this.value;var d=this.value;if(null!=a){var c=a.equals("%");if(c||a.endsWith("hz")){var g=this.getAtomIndex(1),e=this.getAtomIndex(2);if(0<=g&&0<=e){var g=this.getAtom(1),e=this.getAtom(2),h=!c&&1==JM.Measurement.nmrType(a);
this.type=c?"percent":h?"dipoleCouplingConstant":"J-CouplingConstant";d=c?d/(g.getVanderwaalsRadiusFloat(this.vwr,J.c.VDW.AUTO)+e.getVanderwaalsRadiusFloat(this.vwr,J.c.VDW.AUTO)):h?this.vwr.getNMRCalculation().getDipolarConstantHz(g,e):this.vwr.getNMRCalculation().getIsoOrAnisoHz(!0,g,e,a,null);this.$isValid=!Float.isNaN(d);c&&(a="pm")}}if(a.equals("nm"))return b?Math.round(100*d)/1E3:d/10;if(a.equals("pm"))return b?Math.round(1E3*d)/10:100*d;if(a.equals("au"))return b?Math.round(1E3*(d/0.5291772))/
1E3:d/0.5291772;if(a.endsWith("khz"))return b?Math.round(d/10)/100:d/1E3}return b?Math.round(100*d)/100:d},"~S,~B");c$.nmrType=c(c$,"nmrType",function(a){return 0>a.indexOf("hz")?0:a.startsWith("dc_")||a.equals("khz")?1:2},"~S");c(c$,"formatAngle",function(a){var b=this.getLabelString();0<=b.indexOf("%V")&&(a=Math.round(10*a)/10);return this.formatString(a,"\u00b0",b)},"~N");c(c$,"getLabelString",function(){var a=this.countPlusIndices[0]+":",b=null;if(null!=this.strFormat){if(0==this.strFormat.length)return null;
b=2<this.strFormat.length&&0==this.strFormat.indexOf(a)?this.strFormat:null}null==b&&(this.strFormat=null,b=this.vwr.getDefaultMeasurementLabel(this.countPlusIndices[0]));0==b.indexOf(a)&&(b=b.substring(2));null==this.strFormat&&(this.strFormat=a+b);return b});c(c$,"formatString",function(a,b,d){return JM.LabelToken.formatLabelMeasure(this.vwr,this,d,a,b)},"~N,~S,~S");c(c$,"sameAsPoints",function(a,b){if(this.count!=a[0])return!1;for(var d=!0,c=1;c<=this.count&&d;c++)d=this.countPlusIndices[c]==a[c];
if(d)for(c=0;c<this.count&&d;c++)null!=b[c]&&(d=0.01>this.pts[c].distance(b[c]));if(d)return!0;switch(this.count){default:return!0;case 2:return this.sameAsIJ(a,b,1,2)&&this.sameAsIJ(a,b,2,1);case 3:return this.sameAsIJ(a,b,1,3)&&this.sameAsIJ(a,b,2,2)&&this.sameAsIJ(a,b,3,1);case 4:return this.sameAsIJ(a,b,1,4)&&this.sameAsIJ(a,b,2,3)&&this.sameAsIJ(a,b,3,2)&&this.sameAsIJ(a,b,4,1)}},"~A,~A");c(c$,"sameAsIJ",function(a,b,d,c){d=this.countPlusIndices[d];a=a[c];return 0<=d||0<=a?d==a:0.01>this.pts[-2-
d].distance(b[-2-a])},"~A,~A,~N,~N");c(c$,"sameAs",function(a,b){return this.sameAsIJ(this.countPlusIndices,this.pts,a,b)},"~N,~N");c(c$,"toVector",function(a){for(var b=new JU.Lst,d=1;d<=this.count;d++)b.addLast(this.getLabel(d,a,!1));b.addLast(this.strMeasurement);return b},"~B");c(c$,"getMeasurement",function(a){if(null==this.countPlusIndices||2>this.count)return NaN;for(var b=this.count;0<=--b;)if(-1==this.countPlusIndices[b+1])return NaN;var b=null==a?this.getAtom(1):a[0],d=null==a?this.getAtom(2):
a[1],c;switch(this.count){case 2:return b.distance(d);case 3:return c=null==a?this.getAtom(3):a[2],JU.Measure.computeAngleABC(b,d,c,!0);case 4:return c=null==a?this.getAtom(3):a[2],a=null==a?this.getAtom(4):a[3],JU.Measure.computeTorsion(b,d,c,a,!0);default:return NaN}},"~A");c(c$,"getLabel",function(a,b,d){var c=this.countPlusIndices[a];return 0>c?(d?"modelIndex "+this.getAtom(a).mi+" ":"")+JU.Escape.eP(this.getAtom(a)):b?"(({"+c+"}))":this.vwr.getAtomInfo(c)},"~N,~B,~B");c(c$,"setModelIndex",function(a){if(null!=
this.pts)for(var b=0;b<this.count;b++)null!=this.pts[b]&&(this.pts[b].mi=a)},"~N");c(c$,"isValid",function(){return!(this.sameAs(1,2)||2<this.count&&this.sameAs(1,3)||4==this.count&&this.sameAs(2,4))});c$.find=c(c$,"find",function(a,b){for(var d=b.countPlusIndices,c=b.pts,g=a.size();0<=--g;)if(a.get(g).sameAsPoints(d,c))return g;return-1},"JU.Lst,JM.Measurement");c(c$,"isConnected",function(a,b){for(var d=-1,c=1;c<=b;c++){var g=this.getAtomIndex(c);if(!(0>g)){if(0<=d&&!a[g].isBonded(a[d]))return!1;
d=g}}return!0},"~A,~N");c(c$,"getInfoAsString",function(a){var b=this.fixValue(a,!0);a=new JU.SB;a.append(2==this.count?null==this.type?"distance":this.type:3==this.count?"angle":"dihedral");a.append(" \t").appendF(b);a.append(" \t").append(JU.PT.esc(this.strMeasurement));for(b=1;b<=this.count;b++)a.append(" \t").append(this.getLabel(b,!1,!1));null!=this.thisID&&a.append(" \t").append(this.thisID);return a.toString()},"~S");c(c$,"isInRange",function(a,b){if(a.factorType===J.atomdata.RadiusData.EnumType.FACTOR){var d=
this.getAtom(1),c=this.getAtom(2),d=(d.getVanderwaalsRadiusFloat(this.vwr,a.vdwType)+c.getVanderwaalsRadiusFloat(this.vwr,a.vdwType))*a.value;return b<=d}return 3.4028235E38==a.values[0]||b>=a.values[0]&&b<=a.values[1]},"J.atomdata.RadiusData,~N");c(c$,"isIntramolecular",function(a,b){for(var d=-1,c=1;c<=b;c++){var g=this.getAtomIndex(c);if(!(0>g))if(g=a[g].getMoleculeNumber(!1),0>d)d=g;else if(g!=d)return!1}return!0},"~A,~N");c(c$,"isMin",function(a){var b=this.getAtom(1),d=this.getAtom(2),c=z(100*
d.distanceSquared(b)),b=b.getAtomName(),d=d.getAtomName(),d=0>b.compareTo(d)?b+d:d+b;a=a.get(d);return null!=a&&c==a.intValue()},"java.util.Map");C(c$,"NMR_NOT",0,"NMR_DC",1,"NMR_JC",2)}),u("JM"),v(["J.api.JmolMeasurementClient"],"JM.MeasurementData",["java.lang.Float","JU.BS","$.Lst","JM.Measurement","JU.BSUtil"],function(){c$=s(function(){this.points=this.measurements=this.measurementStrings=this.client=null;this.mustNotBeConnected=this.mustBeConnected=!1;this.tickInfo=null;this.tokAction=1060866;
this.note=this.strFormat=this.radiusData=null;this.isAll=!1;this.colix=0;this.intramolecular=null;this.mad=0;this.vwr=this.ms=this.minArray=this.units=this.atoms=this.text=this.thisID=null;this.iFirstAtom=0;this.justOneModel=!0;this.htMin=null;p(this,arguments)},JM,"MeasurementData",null,J.api.JmolMeasurementClient);t(c$,function(){});c(c$,"init",function(a,b,d){this.vwr=b;this.points=d;this.thisID=a;return this},"~S,JV.Viewer,JU.Lst");c(c$,"setModelSet",function(a){this.ms=a;return this},"JM.ModelSet");
c(c$,"set",function(a,b,d,c,g,e,h,l,j,n,m,r,p){this.ms=this.vwr.ms;this.tokAction=a;2<=this.points.size()&&(q(this.points.get(0),JU.BS)&&q(this.points.get(1),JU.BS))&&(this.justOneModel=JU.BSUtil.haveCommon(this.vwr.ms.getModelBS(this.points.get(0),!1),this.vwr.ms.getModelBS(this.points.get(1),!1)));this.htMin=b;this.radiusData=d;this.strFormat=c;this.units=g;this.tickInfo=e;this.mustBeConnected=h;this.mustNotBeConnected=l;this.intramolecular=j;this.isAll=n;this.mad=m;this.colix=r;this.text=p;return this},
"~N,java.util.Map,J.atomdata.RadiusData,~S,~S,JM.TickInfo,~B,~B,Boolean,~B,~N,~N,JM.Text");c(c$,"processNextMeasure",function(a){var b=a.getMeasurement(null);if(!(null!=this.htMin&&!a.isMin(this.htMin)||null!=this.radiusData&&!a.isInRange(this.radiusData,b)))if(null==this.measurementStrings&&null==this.measurements){var d=this.minArray[this.iFirstAtom];a.value=b;b=a.fixValue(this.units,!1);this.minArray[this.iFirstAtom]=-Infinity==1/d?b:Math.min(d,b)}else null!=this.measurementStrings?this.measurementStrings.addLast(a.getStringUsing(this.vwr,
this.strFormat,this.units)):this.measurements.addLast(Float.$valueOf(a.getMeasurement(null)))},"JM.Measurement");c(c$,"getMeasurements",function(a,b){if(b){this.minArray=M(this.points.get(0).cardinality(),0);for(var d=0;d<this.minArray.length;d++)this.minArray[d]=-0;this.define(null,this.ms);return this.minArray}if(a)return this.measurements=new JU.Lst,this.define(null,this.ms),this.measurements;this.measurementStrings=new JU.Lst;this.define(null,this.ms);return this.measurementStrings},"~B,~B");
c(c$,"define",function(a,b){this.client=null==a?this:a;this.atoms=b.at;var d=this.points.size();if(!(2>d)){var c=-1,g=Array(4),e=E(5,0),h=(new JM.Measurement).setPoints(b,e,g,null);h.setCount(d);for(var l=-1,j=0;j<d;j++){var n=this.points.get(j);if(q(n,JU.BS)){l=n.cardinality();if(0==l)return;1<l&&(c=0);l=j;0==j&&(this.iFirstAtom=0);e[j+1]=n.nextSetBit(0)}else g[j]=n,e[j+1]=-2-j}this.nextMeasure(0,l,h,c)}},"J.api.JmolMeasurementClient,JM.ModelSet");c(c$,"nextMeasure",function(a,b,d,c){if(a>b)d.isValid()&&
((!this.mustBeConnected||d.isConnected(this.atoms,a))&&(!this.mustNotBeConnected||!d.isConnected(this.atoms,a))&&(null==this.intramolecular||d.isIntramolecular(this.atoms,a)==this.intramolecular.booleanValue()))&&this.client.processNextMeasure(d);else{var g=this.points.get(a),e=d.countPlusIndices,h=0==a?2147483647:e[a];if(0>h)this.nextMeasure(a+1,b,d,c);else{for(var l=!1,j=g.nextSetBit(0),n=0;0<=j;j=g.nextSetBit(j+1),n++)if(j!=h){var m=this.atoms[j].mi;if(0<=c&&this.justOneModel)if(0==a)c=m;else if(c!=
m)continue;e[a+1]=j;0==a&&(this.iFirstAtom=n);l=!0;this.nextMeasure(a+1,b,d,c)}l||this.nextMeasure(a+1,b,d,c)}}},"~N,~N,JM.Measurement,~N")}),u("JM"),v(["JM.Measurement"],"JM.MeasurementPending",null,function(){c$=s(function(){this.haveModified=this.haveTarget=!1;this.numSet=0;this.lastIndex=-1;p(this,arguments)},JM,"MeasurementPending",JM.Measurement);c(c$,"set",function(a){return this.setM(a,null,NaN,0,null,0)},"JM.ModelSet");c(c$,"checkPoint",function(a){for(var b=1;b<=this.numSet;b++)if(this.countPlusIndices[b]==
-1-b&&0.01>this.pts[b-1].distance(a))return!1;return!0},"JU.Point3fi");c(c$,"getIndexOf",function(a){for(var b=1;b<=this.numSet;b++)if(this.countPlusIndices[b]==a)return b;return 0},"~N");j(c$,"setCount",function(a){this.setCountM(a);this.numSet=a},"~N");c(c$,"addPoint",function(a,b,d){this.haveModified=a!=this.lastIndex;this.lastIndex=a;if(null==b){if(0<this.getIndexOf(a))return d&&(this.numSet=this.count),this.count;this.haveTarget=0<=a;if(!this.haveTarget)return this.count=this.numSet;this.count=
this.numSet+1;this.countPlusIndices[this.count]=a}else{if(!this.checkPoint(b))return d&&(this.numSet=this.count),this.count;a=this.numSet;this.haveModified=this.haveTarget=!0;this.count=this.numSet+1;this.pts[a]=b;this.countPlusIndices[this.count]=-2-a}this.countPlusIndices[0]=this.count;d&&(this.numSet=this.count);this.value=this.getMeasurement(null);this.strFormat=null;this.formatMeasurement(null);return this.count},"~N,JU.Point3fi,~B")}),u("JM"),v(["JU.BS","$.SB"],"JM.Model",["java.util.Hashtable",
"JU.AU","JU.BSUtil"],function(){c$=s(function(){this.ms=null;this.hydrogenCount=this.fileIndex=this.modelIndex=0;this.hasRasmolHBonds=this.isPdbWithMultipleBonds=this.isBioModel=!1;this.loadState="";this.loadScript=null;this.isModelKit=!1;this.dataFrames=null;this.dataSourceFrame=-1;this.jmolFrameType=this.jmolData=null;this.ac=this.firstAtomIndex=0;this.bsAtomsDeleted=this.bsAtoms=null;this.trajectoryBaseIndex=0;this.isTrajectory=!1;this.bondCount=this.selectedTrajectory=-1;this.nInsertions=this.nAltLocs=
this.moleculeCount=this.firstMoleculeIndex=0;this.groupCount=-1;this.chainCount=0;this.chains=null;this.biosymmetryCount=0;this.properties=this.auxiliaryInfo=null;this.defaultRotationRadius=0;this.orientation=this.biosymmetry=this.defaultStructure=null;this.isJmolDataFrame=this.structureTainted=!1;this.frameDelay=0;this.dssrCache=this.simpleCage=null;p(this,arguments)},JM,"Model");N(c$,function(){this.loadScript=new JU.SB;this.bsAtoms=new JU.BS;this.bsAtomsDeleted=new JU.BS;this.chains=Array(8)});
c(c$,"getModelSet",function(){return this.ms});c(c$,"isModelkit",function(){return this.isModelKit});c(c$,"getTrueAtomCount",function(){return this.bsAtoms.cardinality()-this.bsAtomsDeleted.cardinality()});c(c$,"resetBoundCount",function(){this.bondCount=-1});c(c$,"getBondCount",function(){if(0<=this.bondCount)return this.bondCount;var a=this.ms.bo;this.bondCount=0;for(var b=this.ms.bondCount;0<=--b;)a[b].atom1.mi==this.modelIndex&&this.bondCount++;return this.bondCount});t(c$,function(){});c(c$,
"set",function(a,b,d,c,g,e){this.ms=a;this.dataSourceFrame=this.modelIndex=b;this.trajectoryBaseIndex=(this.isTrajectory=0<=d)?d:b;null==e&&(e=new java.util.Hashtable);this.auxiliaryInfo=e;e.containsKey("biosymmetryCount")&&(this.biosymmetryCount=e.get("biosymmetryCount").intValue(),this.biosymmetry=e.get("biosymmetry"));this.properties=g;null==c?this.jmolFrameType="modelSet":(this.jmolData=c,this.isJmolDataFrame=!0,e.put("jmolData",c),e.put("title",c),this.jmolFrameType=0<=c.indexOf("ramachandran")?
"ramachandran":0<=c.indexOf("quaternion")?"quaternion":"data");return this},"JM.ModelSet,~N,~N,~S,java.util.Properties,java.util.Map");c(c$,"getChainCount",function(a){if(1<this.chainCount&&!a)for(a=0;a<this.chainCount;a++)if(0==this.chains[a].chainID)return this.chainCount-1;return this.chainCount},"~B");c(c$,"getGroupCountHetero",function(a){for(var b=0,d=this.chainCount;0<=--d;)for(var c=this.chains[d].groupCount;0<=--c;)this.chains[d].groups[c].isHetero()==a&&b++;return b},"~B");c(c$,"calcSelectedGroupsCount",
function(a){for(var b=this.chainCount;0<=--b;)this.chains[b].calcSelectedGroupsCount(a)},"JU.BS");c(c$,"getGroupCount",function(){if(0>this.groupCount){this.groupCount=0;for(var a=this.chainCount;0<=--a;)this.groupCount+=this.chains[a].groupCount}return this.groupCount});c(c$,"getChainAt",function(a){return a<this.chainCount?this.chains[a]:null},"~N");c(c$,"getChain",function(a){for(var b=this.chainCount;0<=--b;){var d=this.chains[b];if(d.chainID==a)return d}return null},"~N");c(c$,"fixIndices",function(a,
b,d){this.fixIndicesM(a,b,d)},"~N,~N,JU.BS");c(c$,"fixIndicesM",function(a,b,d){this.dataSourceFrame>a&&this.dataSourceFrame--;this.trajectoryBaseIndex>a&&this.trajectoryBaseIndex--;this.firstAtomIndex-=b;for(a=0;a<this.chainCount;a++)this.chains[a].fixIndices(b,d);JU.BSUtil.deleteBits(this.bsAtoms,d);JU.BSUtil.deleteBits(this.bsAtomsDeleted,d)},"~N,~N,JU.BS");c(c$,"freeze",function(){this.freezeM()});c(c$,"freezeM",function(){this.chains=JU.AU.arrayCopyObject(this.chains,this.chainCount);this.groupCount=
-1;this.getGroupCount();for(var a=0;a<this.chainCount;++a)this.chains[a].groups=JU.AU.arrayCopyObject(this.chains[a].groups,this.chains[a].groupCount)});c(c$,"getPdbData",function(){},"JV.Viewer,~S,~S,~B,JU.BS,JU.OC,~A,JU.SB,JU.BS");c(c$,"getBioBranches",function(a){return a},"JU.Lst");c(c$,"clearBioPolymers",function(){});c(c$,"getAllPolymerInfo",function(){},"JU.BS,java.util.Map,JU.Lst");c(c$,"getBioPolymerCount",function(){return 0});c(c$,"calculateStructures",function(){return""},"~B,~B,~B,~B,~B");
c(c$,"setStructureList",function(){},"java.util.Map");c(c$,"getChimeInfo",function(a,b){this.getChimeInfoM(a,b)},"JU.SB,~N");c(c$,"getChimeInfoM",function(a,b){a.append("\nNumber of Atoms ..... "+(this.ms.ac-b));0<b&&a.append(" ("+b+")");a.append("\nNumber of Bonds ..... "+this.ms.bondCount);a.append("\nNumber of Models ...... "+this.ms.mc)},"JU.SB,~N");c(c$,"setConformation",function(){},"JU.BS");c(c$,"getPdbConformation",function(){return!1},"JU.BS,~N");c(c$,"getFullPDBHeader",function(){return null});
c(c$,"getSequenceBits",function(){return null},"JM.ModelSet,~S,JU.BS");c(c$,"getBasePairBits",function(){return null},"JM.ModelSet,~S");c(c$,"resetRasmolBonds",function(){},"JM.Model,JU.BS");c(c$,"calcRasmolHydrogenBonds",function(){},"JM.ModelSet,JU.BS,JU.BS,JU.Lst,~B,~N,~B,JU.BS");c(c$,"getFullProteinStructureState",function(){return null},"JM.ModelSet,JU.BS,~B,~B,~N");c(c$,"calculateAllPolymers",function(){},"JM.ModelSet,~A,~N,~N,JU.BS");c(c$,"getGroupsWithinAll",function(){return null},"JM.ModelSet,~N,JU.BS");
c(c$,"getSelectCodeRange",function(){return null},"JM.ModelSet,~A");c(c$,"calculateStruts",function(){return 0},"JM.ModelSet,JU.BS,JU.BS");c(c$,"getPolymerPointsAndVectors",function(){},"JU.BS,JU.Lst,~B,~N");c(c$,"recalculatePoints",function(){},"JM.ModelSet,~N");c(c$,"getDefaultLargePDBRendering",function(){},"JU.SB,~N");c(c$,"calcSelectedMonomersCount",function(){},"JU.BS");c(c$,"getBioPolymerCountInModel",function(){return 0},"JM.ModelSet,~N");c(c$,"calculateStraightnessAll",function(){},"JM.ModelSet")}),
u("JM"),v(["java.util.Hashtable","JU.BS"],"JM.ModelLoader","java.lang.Boolean $.Float $.NullPointerException java.util.Arrays JU.AU $.Lst $.P3 $.PT $.SB $.V3 J.api.Interface JM.Chain $.Group $.Model $.ModelSet JU.BSUtil $.Elements $.JmolMolecule $.Logger".split(" "),function(){c$=s(function(){this.mergeModelSet=this.ms=this.vwr=null;this.appendNew=this.merging=!1;this.specialAtomIndexes=this.group3Counts=this.group3Lists=this.jmolData=null;this.doAddHydrogens=this.doMinimize=this.isPyMOLsession=this.isTrajectory=
this.is2D=this.someModelsAreModulated=this.someModelsHaveUnitcells=!1;this.groups=this.jbr=this.fileHeader=null;this.groupCount=0;this.firstAtomIndexes=this.seqcodes=this.group3Of=this.chainOf=this.htAtomMap=this.modulationTUV=null;this.iModel=0;this.model=null;this.currentChainID=0;this.isNewChain=!1;this.currentChain=null;this.currentGroupSequenceNumber=0;this.currentGroupInsertionCode="\x00";this.nullGroup=this.currentGroup3=null;this.adapterTrajectoryCount=this.adapterModelCount=this.baseTrajectoryCount=
this.baseGroupIndex=this.baseAtomIndex=this.baseModelCount=this.baseModelIndex=0;this.modulationOn=this.noAutoBond=!1;this.$mergeGroups=this.htGroup1=null;this.iChain=0;this.structuresDefinedInFile=this.vStereo=null;p(this,arguments)},JM,"ModelLoader");N(c$,function(){this.htAtomMap=new java.util.Hashtable;this.structuresDefinedInFile=new JU.BS});t(c$,function(a,b,d,c,g,e){this.vwr=a;this.ms=new JM.ModelSet(a,b);var h=a.getModelAdapter();this.mergeModelSet=g;(this.merging=null!=this.mergeModelSet&&
0<this.mergeModelSet.ac)?this.ms.canSkipLoad=!1:a.resetShapes(!1);this.ms.preserveState=a.getPreserveState();this.ms.showRebondTimes=a.getBoolean(603979934);null==e?(this.initializeInfo(b,null),this.createModelSet(null,null,null),a.setStringProperty("_fileType","")):(this.ms.preserveState||(this.ms.canSkipLoad=!1),a=h.getAtomSetCollectionAuxiliaryInfo(c),a.put("loadScript",d),this.initializeInfo(h.getFileTypeName(c).toLowerCase().intern(),a),this.createModelSet(h,c,e),null!=this.jbr&&this.jbr.setLoader(null),
this.jbr=null)},"JV.Viewer,~S,JU.SB,~O,JM.ModelSet,JU.BS");c(c$,"initializeInfo",function(a,b){this.ms.g3d=this.vwr.gdata;this.ms.modelSetTypeName=a;this.ms.isXYZ="xyz"===a;this.ms.msInfo=b;this.ms.modelSetProperties=this.ms.getInfoM("properties");this.ms.haveBioModels=this.ms.getMSInfoB("isPDB");this.ms.haveBioModels&&(this.jbr=this.vwr.getJBR().setLoader(this));this.jmolData=this.ms.getInfoM("jmolData");this.fileHeader=this.ms.getInfoM("fileHeader");this.ms.trajectorySteps=this.ms.getInfoM("trajectorySteps");
this.isTrajectory=null!=this.ms.trajectorySteps;this.isPyMOLsession=this.ms.getMSInfoB("isPyMOL");this.doAddHydrogens=null!=this.jbr&&!this.isTrajectory&&!this.isPyMOLsession&&!this.ms.getMSInfoB("pdbNoHydrogens")&&(this.ms.getMSInfoB("pdbAddHydrogens")||this.vwr.getBooleanProperty("pdbAddHydrogens"));null!=b&&(b.remove("pdbNoHydrogens"),b.remove("pdbAddHydrogens"),b.remove("trajectorySteps"),this.isTrajectory&&(this.ms.vibrationSteps=b.remove("vibrationSteps")),b.containsKey("legacyJavaFloat")&&
this.vwr.setBooleanProperty("legacyJavaFloat",!0));this.htGroup1=this.ms.getInfoM("htGroup1");var d=this.ms.getInfoM("modulationOn");null!=d&&(this.modulationOn=!0,this.modulationTUV=d===Boolean.TRUE?null:d);this.noAutoBond=this.ms.getMSInfoB("noAutoBond");this.doMinimize=(this.is2D=this.ms.getMSInfoB("is2D"))&&this.ms.getMSInfoB("doMinimize");this.adapterTrajectoryCount=null==this.ms.trajectorySteps?0:this.ms.trajectorySteps.size();this.ms.someModelsHaveSymmetry=this.ms.getMSInfoB("someModelsHaveSymmetry");
this.someModelsHaveUnitcells=this.ms.getMSInfoB("someModelsHaveUnitcells");this.someModelsAreModulated=this.ms.getMSInfoB("someModelsAreModulated");this.ms.someModelsHaveFractionalCoordinates=this.ms.getMSInfoB("someModelsHaveFractionalCoordinates");this.merging&&(this.ms.haveBioModels=(new Boolean(this.ms.haveBioModels|this.mergeModelSet.haveBioModels)).valueOf(),this.ms.bioModel=this.mergeModelSet.bioModel,this.ms.someModelsHaveSymmetry=(new Boolean(this.ms.someModelsHaveSymmetry|this.mergeModelSet.getMSInfoB("someModelsHaveSymmetry"))).valueOf(),
this.someModelsHaveUnitcells=(new Boolean(this.someModelsHaveUnitcells|this.mergeModelSet.getMSInfoB("someModelsHaveUnitcells"))).valueOf(),this.ms.someModelsHaveFractionalCoordinates=(new Boolean(this.ms.someModelsHaveFractionalCoordinates|this.mergeModelSet.getMSInfoB("someModelsHaveFractionalCoordinates"))).valueOf(),this.ms.someModelsHaveAromaticBonds=(new Boolean(this.ms.someModelsHaveAromaticBonds|this.mergeModelSet.someModelsHaveAromaticBonds)).valueOf(),this.ms.msInfo.put("someModelsHaveSymmetry",
Boolean.$valueOf(this.ms.someModelsHaveSymmetry)),this.ms.msInfo.put("someModelsHaveUnitcells",Boolean.$valueOf(this.someModelsHaveUnitcells)),this.ms.msInfo.put("someModelsHaveFractionalCoordinates",Boolean.$valueOf(this.ms.someModelsHaveFractionalCoordinates)),this.ms.msInfo.put("someModelsHaveAromaticBonds",Boolean.$valueOf(this.ms.someModelsHaveAromaticBonds)))},"~S,java.util.Map");c(c$,"getGroup3",function(a){return a>=this.group3Of.length?null:this.group3Of[a]},"~N");c(c$,"getFirstAtomIndex",
function(a){return this.firstAtomIndexes[a]},"~N");c(c$,"getAtomCount",function(){return this.ms.ac});c(c$,"createModelSet",function(a,b,d){var c=null==a?0:a.getAtomCount(b);0<c&&JU.Logger.info("reading "+c+" atoms");this.adapterModelCount=null==a?1:a.getAtomSetCount(b);this.appendNew=!this.merging||null==a||1<this.adapterModelCount||this.isTrajectory||this.vwr.getBoolean(603979792);this.htAtomMap.clear();this.chainOf=Array(32);this.group3Of=Array(32);this.seqcodes=E(32,0);this.firstAtomIndexes=E(32,
0);this.currentChainID=2147483647;this.currentChain=null;this.currentGroupInsertionCode="\uffff";this.currentGroup3="xxxxx";this.iModel=-1;this.model=null;if(this.merging&&(this.baseModelCount=this.mergeModelSet.mc,this.baseTrajectoryCount=this.mergeModelSet.mergeTrajectories(this.isTrajectory),0<this.baseTrajectoryCount)){if(this.isTrajectory){if(null==this.mergeModelSet.vibrationSteps){this.mergeModelSet.vibrationSteps=new JU.Lst;for(var g=this.mergeModelSet.trajectorySteps.size();0<=--g;)this.mergeModelSet.vibrationSteps.addLast(null)}for(g=
0;g<this.ms.trajectorySteps.size();g++)this.mergeModelSet.trajectorySteps.addLast(this.ms.trajectorySteps.get(g)),this.mergeModelSet.vibrationSteps.addLast(null==this.ms.vibrationSteps?null:this.ms.vibrationSteps.get(g))}this.ms.trajectorySteps=this.mergeModelSet.trajectorySteps;this.ms.vibrationSteps=this.mergeModelSet.vibrationSteps}this.initializeAtomBondModelCounts(c);null!=d&&(this.doMinimize||this.is2D)&&d.setBits(this.baseAtomIndex,this.baseAtomIndex+c);null==a?this.setModelNameNumberProperties(0,
-1,"",1,null,null,null):(0<this.adapterModelCount&&(JU.Logger.info("ModelSet: haveSymmetry:"+this.ms.someModelsHaveSymmetry+" haveUnitcells:"+this.someModelsHaveUnitcells+" haveFractionalCoord:"+this.ms.someModelsHaveFractionalCoordinates),JU.Logger.info(this.adapterModelCount+" model"+(1==this.ms.mc?"":"s")+' in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.')),g=this.ms.getInfoM("defaultOrientationQuaternion"),null!=g&&(JU.Logger.info("defaultOrientationQuaternion = "+
g),JU.Logger.info('Use "set autoLoadOrientation TRUE" before loading or "restore orientation DEFAULT" after loading to view this orientation.')),this.iterateOverAllNewModels(a,b),this.iterateOverAllNewAtoms(a,b),this.iterateOverAllNewBonds(a,b),this.merging&&!this.appendNew&&(g=a.getAtomSetAuxiliaryInfo(b,0),this.ms.setInfo(this.baseModelIndex,"initialAtomCount",g.get("initialAtomCount")),this.ms.setInfo(this.baseModelIndex,"initialBondCount",g.get("initialBondCount"))),this.initializeUnitCellAndSymmetry(),
this.initializeBonding());this.finalizeGroupBuild();this.is2D&&this.doMinimize&&this.applyStereochemistry();this.doAddHydrogens&&this.jbr.finalizeHydrogens();null!=a&&(this.ms.calculatePolymers(this.groups,this.groupCount,this.baseGroupIndex,null),null!=this.jbr&&this.jbr.iterateOverAllNewStructures(a,b));this.setDefaultRendering(this.vwr.getInt(553648170));var e=this.vwr.rd;d=this.ms.ac;c=this.ms.at;for(g=this.baseAtomIndex;g<d;g++)c[g].setMadAtom(this.vwr,e);e=this.ms.am;for(g=e[this.baseModelIndex].firstAtomIndex;g<
d;g++)e[c[g].mi].bsAtoms.set(g);this.freeze();this.finalizeShapes();this.vwr.setModelSet(this.ms);this.setAtomProperties();null!=a&&a.finish(b);null!=this.mergeModelSet&&this.mergeModelSet.releaseModelSet();this.mergeModelSet=null},"J.api.JmolAdapter,~O,JU.BS");c(c$,"setDefaultRendering",function(a){if(!this.isPyMOLsession){for(var b=new JU.SB,d=this.ms.mc,c=this.ms.am,g=this.baseModelIndex;g<d;g++)c[g].isBioModel&&c[g].getDefaultLargePDBRendering(b,a);0!=b.length()&&(b.append("select *;"),a=this.ms.getInfoM("jmolscript"),
null==a&&(a=""),b.append(a),this.ms.msInfo.put("jmolscript",b.toString()))}},"~N");c(c$,"setAtomProperties",function(){for(var a=this.ms.mc,b=this.baseModelIndex;b<a;b++){var d=this.ms.getInfo(b,"atomProperties"),c=this.ms.getInfo(b,"groupPropertyList");if(null!=d)for(var g,d=d.entrySet().iterator();d.hasNext()&&((g=d.next())||1);){var e=g.getKey(),h=g.getValue(),l=this.ms.getModelAtomBitSetIncludingDeleted(b,!0);if(this.doAddHydrogens)var j=null!=c&&JU.PT.isOneOf(e,c),h=this.jbr.fixPropertyValue(l,
h,j);e="property_"+e.toLowerCase();JU.Logger.info("creating "+e+" for model "+this.ms.getModelName(b));this.vwr.setData(e,[e,h,l,Integer.$valueOf(-1),Boolean.FALSE],this.ms.ac,0,0,2147483647,0)}}});c(c$,"initializeAtomBondModelCounts",function(a){var b=this.adapterTrajectoryCount;this.merging?(this.appendNew?(this.baseModelIndex=this.baseModelCount,this.ms.mc=this.baseModelCount+this.adapterModelCount):(this.baseModelIndex=this.vwr.am.cmi,0>this.baseModelIndex&&(this.baseModelIndex=this.baseModelCount-
1),this.ms.mc=this.baseModelCount),this.ms.ac=this.baseAtomIndex=this.mergeModelSet.ac,this.ms.bondCount=this.mergeModelSet.bondCount,this.$mergeGroups=this.mergeModelSet.getGroups(),this.groupCount=this.baseGroupIndex=this.$mergeGroups.length,this.ms.mergeModelArrays(this.mergeModelSet),this.ms.growAtomArrays(this.ms.ac+a)):(this.ms.mc=this.adapterModelCount,this.ms.ac=0,this.ms.bondCount=0,this.ms.at=Array(a),this.ms.bo=Array(250+a));this.doAddHydrogens&&this.jbr.initializeHydrogenAddition();1<
b&&(this.ms.mc+=b-1);this.ms.am=JU.AU.arrayCopyObject(this.ms.am,this.ms.mc);this.ms.modelFileNumbers=JU.AU.arrayCopyI(this.ms.modelFileNumbers,this.ms.mc);this.ms.modelNumbers=JU.AU.arrayCopyI(this.ms.modelNumbers,this.ms.mc);this.ms.modelNumbersForAtomLabel=JU.AU.arrayCopyS(this.ms.modelNumbersForAtomLabel,this.ms.mc);this.ms.modelNames=JU.AU.arrayCopyS(this.ms.modelNames,this.ms.mc);this.ms.frameTitles=JU.AU.arrayCopyS(this.ms.frameTitles,this.ms.mc);if(this.merging)for(a=0;a<this.mergeModelSet.mc;a++)(this.ms.am[a]=
this.mergeModelSet.am[a]).ms=this.ms},"~N");c(c$,"mergeGroups",function(){var a=this.mergeModelSet.getAuxiliaryInfo(null),b=a.get("group3Lists"),a=a.get("group3Counts");if(null!=b){for(var d=0;d<this.baseModelCount;d++)this.group3Lists[d+1]=b[d+1],this.group3Counts[d+1]=a[d+1],this.structuresDefinedInFile.set(d);this.group3Lists[0]=b[0];this.group3Counts[0]=a[0]}!this.appendNew&&this.ms.haveBioModels&&this.structuresDefinedInFile.clear(this.baseModelIndex)});c(c$,"iterateOverAllNewModels",function(a,
b){this.group3Lists=Array(this.ms.mc+1);this.group3Counts=JU.AU.newInt2(this.ms.mc+1);this.structuresDefinedInFile=new JU.BS;this.merging&&this.mergeGroups();for(var d=this.isTrajectory?this.baseTrajectoryCount:-1,c=this.baseModelIndex,g=0;g<this.adapterModelCount;++g,++c){var e=a.getAtomSetNumber(b,g),h=a.getAtomSetName(b,g),l=a.getAtomSetAuxiliaryInfo(b,g);l.containsKey("modelID")&&l.put("modelID0",l.get("modelID"));var j=l.get("modelProperties");this.vwr.setStringProperty("_fileType",l.get("fileType"));
null==h&&(h=null!=this.jmolData&&2<this.jmolData.indexOf(";")?this.jmolData.substring(this.jmolData.indexOf(":")+2,this.jmolData.indexOf(";")):this.appendNew?""+e%1E6:"");this.setModelNameNumberProperties(c,d,h,e,j,l,this.jmolData)&&this.jbr.setGroupLists(c);null!=this.ms.getInfo(c,"periodicOriginXyz")&&(this.ms.someModelsHaveSymmetry=!0)}d=this.ms.am[this.baseModelIndex];this.vwr.setSmilesString(this.ms.msInfo.get("smilesString"));g=this.ms.msInfo.remove("loadState");e=this.ms.msInfo.remove("loadScript");
if(0>e.indexOf("Viewer.AddHydrogens")||!d.isModelKit){h=JU.PT.split(g,"\n");l=new JU.SB;for(g=0;g<h.length;g++)j=d.loadState.indexOf(h[g]),(0>j||j!=d.loadState.lastIndexOf(h[g]))&&l.append(h[g]).appendC("\n");d.loadState+=d.loadScript.toString()+l.toString();d.loadScript=new JU.SB;d.loadScript.append("  ").appendSB(e).append(";\n")}if(this.isTrajectory){g=this.ms.mc-c+1;JU.Logger.info(g+" trajectory steps read");this.ms.setInfo(this.baseModelCount,"trajectoryStepCount",Integer.$valueOf(g));d=this.adapterModelCount;
for(g=c;g<this.ms.mc;g++,d++)this.ms.am[g]=this.ms.am[this.baseModelCount],this.ms.modelNumbers[g]=a.getAtomSetNumber(b,d),this.ms.modelNames[g]=a.getAtomSetName(b,d),this.structuresDefinedInFile.set(g)}this.finalizeModels(this.baseModelCount)},"J.api.JmolAdapter,~O");c(c$,"setModelNameNumberProperties",function(a,b,d,c,g,e,h){var l=null!=e&&Boolean.TRUE===e.get("isPDB");this.appendNew?(this.ms.am[a]=l?this.jbr.getBioModel(a,b,h,g,e):(new JM.Model).set(this.ms,a,b,h,g,e),this.ms.modelNumbers[a]=c,
this.ms.modelNames[a]=d):(b=e.get("PDB_CONECT_firstAtom_count_max"),null!=b&&this.ms.setInfo(a,"PDB_CONECT_firstAtom_count_max",b));b=this.ms.am;c=this.ms.at;b[a].bsAtoms.set(c.length+1);b[a].bsAtoms.clear(c.length+1);c=this.ms.getInfo(a,"altLocs");b[a].nAltLocs=null==c?0:c.length;null!=c&&(c=c.toCharArray(),java.util.Arrays.sort(c),c=String.valueOf(c),this.ms.setInfo(a,"altLocs",c));c=this.ms.getInfo(a,"insertionCodes");b[a].nInsertions=null==c?0:c.length;d=null!=this.ms.modelSetName&&this.ms.modelSetName.startsWith("Jmol Model Kit")||
d.startsWith("Jmol Model Kit")||"Jme".equals(this.ms.getInfo(a,"fileType"));b[a].isModelKit=d;return l},"~N,~N,~S,~N,java.util.Properties,java.util.Map,~S");c(c$,"finalizeModels",function(a){var b=this.ms.mc;if(b!=a){var d,c=0,g=-1,e=this.ms.modelNumbers,h=this.ms.modelNames;if(this.isTrajectory)for(var l=a;++l<this.ms.mc;)e[l]=e[l-1]+1;if(0<a){if(1E6>e[0])for(l=0;l<a;l++)0==h[l].length&&(h[l]=""+e[l]),e[l]+=1E6,this.ms.modelNumbersForAtomLabel[l]="1."+(l+1);var j=e[a-1],j=j-j%1E6;1E6>e[a]&&(j+=1E6);
for(l=a;l<b;l++)e[l]+=j}for(var n=this.ms.am,l=a;l<b;++l)if(this.ms.setInfo(l,"fileType",this.ms.modelSetTypeName),null!=this.fileHeader&&this.ms.setInfo(l,"fileHeader",this.fileHeader),j=x(e[l]/1E6),j!=g&&(c=0,g=j),c++,0==j?(d=""+this.ms.getModelNumber(l),j=1):d=j+"."+c,this.ms.modelNumbersForAtomLabel[l]=d,n[l].fileIndex=j-1,this.ms.modelFileNumbers[l]=1E6*j+c,null==h[l]||0==h[l].length)h[l]=d;if(this.merging)for(l=0;l<a;l++)n[l].ms=this.ms;for(l=0;l<b;l++)this.ms.setInfo(l,"modelName",h[l]),this.ms.setInfo(l,
"modelNumber",Integer.$valueOf(e[l]%1E6)),this.ms.setInfo(l,"modelFileNumber",Integer.$valueOf(this.ms.modelFileNumbers[l])),this.ms.setInfo(l,"modelNumberDotted",this.ms.getModelNumberDotted(l)),a=this.ms.getInfo(l,"altLocs"),null!=a&&JU.Logger.info("model "+this.ms.getModelNumberDotted(l)+" alternative locations: "+a)}},"~N");c(c$,"iterateOverAllNewAtoms",function(a,b){var d=-1,c=!1,g=!1,e=a.getAtomIterator(b),h=0,l=this.ms.am;0<this.ms.mc&&(this.nullGroup=(new JM.Group).setGroup(new JM.Chain(this.ms.am[this.baseModelIndex],
32,-1),"",0,-1,-1));for(;e.hasNext();){h++;var j=e.getAtomSetIndex()+this.baseModelIndex;j!=d&&(this.iChain=0,this.iModel=j,this.model=l[j],this.currentChainID=2147483647,this.isNewChain=!0,l[j].bsAtoms.clearAll(),c=l[j].isBioModel,d=j,g=c&&this.doAddHydrogens,null!=this.jbr&&this.jbr.setHaveHsAlready(!1));var j=e.getGroup3(),n=e.getChainID();this.checkNewGroup(a,n,j,e.getSequenceNumber(),e.getInsertionCode(),g,!1);n=e.getElementNumber();g&&1==JU.Elements.getElementNumber(n)&&this.jbr.setHaveHsAlready(!0);
var m=e.getAtomName(),r=g?this.getPdbCharge(j,m):e.getFormalCharge();this.addAtom(c,e.getSymmetry(),e.getAtomSite(),e.getUniqueID(),n,m,r,e.getPartialCharge(),e.getTensors(),e.getOccupancy(),e.getBfactor(),e.getXYZ(),e.getIsHetero(),e.getSerial(),e.getSeqID(),j,e.getVib(),e.getAltLoc(),e.getRadius())}0<this.groupCount&&g&&this.jbr.addImplicitHydrogenAtoms(a,this.groupCount-1,this.isNewChain?1:0);d=-1;c=null;g=this.ms.at;for(e=0;e<this.ms.ac;e++)g[e].mi!=d&&(d=g[e].mi,l[d].firstAtomIndex=e,j=this.ms.getDefaultVdwType(d),
j!==c&&(JU.Logger.info("Default Van der Waals type for model set to "+j.getVdwLabel()),c=j));JU.Logger.info(h+" atoms created")},"J.api.JmolAdapter,~O");c(c$,"getPdbCharge",function(a,b){return a.equals("ARG")&&b.equals("NH1")||a.equals("LYS")&&b.equals("NZ")||a.equals("HIS")&&b.equals("ND1")?1:0},"~S,~S");c(c$,"addAtom",function(a,b,d,c,g,e,h,l,j,n,m,r,p,w,q,s,t,u,v){var x=0,z=null;if(null!=e){var A;if(0<=(A=e.indexOf("\x00")))z=e.substring(A+1),e=e.substring(0,A);a&&(0<=e.indexOf("*")&&(e=e.$replace("*",
"'")),x=this.vwr.getJBR().lookupSpecialAtomID(e),2==x&&"CA".equalsIgnoreCase(s)&&(x=0))}a=this.ms.addAtom(this.iModel,this.nullGroup,g,e,z,w,q,d,r,v,t,h,l,n,m,j,p,x,b);a.altloc=u;this.htAtomMap.put(c,a)},"~B,JU.BS,~N,~O,~N,~S,~N,~N,JU.Lst,~N,~N,JU.P3,~B,~N,~N,~S,JU.V3,~S,~N");c(c$,"checkNewGroup",function(a,b,d,c,g,e,h){var l=null==d?null:d.intern();b!=this.currentChainID&&(this.currentChainID=b,this.currentChain=this.getOrAllocateChain(this.model,b),this.currentGroupInsertionCode="\uffff",this.currentGroupSequenceNumber=
-1,this.currentGroup3="xxxx",this.isNewChain=!0);if(c!=this.currentGroupSequenceNumber||g!=this.currentGroupInsertionCode||l!==this.currentGroup3){0<this.groupCount&&e&&(this.jbr.addImplicitHydrogenAtoms(a,this.groupCount-1,this.isNewChain&&!h?1:0),this.jbr.setHaveHsAlready(!1));this.currentGroupSequenceNumber=c;this.currentGroupInsertionCode=g;for(this.currentGroup3=l;this.groupCount>=this.group3Of.length;)this.chainOf=JU.AU.doubleLength(this.chainOf),this.group3Of=JU.AU.doubleLengthS(this.group3Of),
this.seqcodes=JU.AU.doubleLengthI(this.seqcodes),this.firstAtomIndexes=JU.AU.doubleLengthI(this.firstAtomIndexes);this.firstAtomIndexes[this.groupCount]=this.ms.ac;this.chainOf[this.groupCount]=this.currentChain;this.group3Of[this.groupCount]=d;this.seqcodes[this.groupCount]=JM.Group.getSeqcodeFor(c,g);++this.groupCount}},"J.api.JmolAdapter,~N,~S,~N,~S,~B,~B");c(c$,"getOrAllocateChain",function(a,b){var d=a.getChain(b);if(null!=d)return d;a.chainCount==a.chains.length&&(a.chains=JU.AU.doubleLength(a.chains));
return a.chains[a.chainCount++]=new JM.Chain(a,b,0==b||32==b?-1:this.iChain++)},"JM.Model,~N");c(c$,"iterateOverAllNewBonds",function(a,b){var d=a.getBondIterator(b);if(null!=d){var c=this.vwr.getMadBond();this.ms.defaultCovalentMad=null==this.jmolData?c:0;for(var g=!1;d.hasNext();){var e=d.getEncodedOrder(),h=e,l=this.bondAtoms(d.getAtomUniqueID1(),d.getAtomUniqueID2(),h);null!=l&&(1<h&&(1025!=h&&1041!=h)&&(g=!0),h=d.getRadius(),0<h&&l.setMad($(2E3*h)),h=d.getColix(),0<=h&&(l.colix=h),l.order|=e&
98304)}g&&(this.ms.someModelsHaveSymmetry&&!this.vwr.getBoolean(603979794))&&JU.Logger.info('ModelSet: use "set appletSymmetryToBonds TRUE " to apply the file-based multiple bonds to symmetry-generated atoms.');this.ms.defaultCovalentMad=c}},"J.api.JmolAdapter,~O");c(c$,"bondAtoms",function(a,b,d){var c=this.htAtomMap.get(a);if(null==c)return JU.Logger.error("bondAtoms cannot find atomUid1?:"+a),null;a=this.htAtomMap.get(b);if(null==a)return JU.Logger.error("bondAtoms cannot find atomUid2?:"+b),null;
if(c.isBonded(a))return null;1025==d||1041==d?(b=this.ms.bondMutually(c,a,this.is2D?d:1,this.ms.getDefaultMadFromOrder(1),0),null==this.vStereo&&(this.vStereo=new JU.Lst),this.vStereo.addLast(b)):(b=this.ms.bondMutually(c,a,d,this.ms.getDefaultMadFromOrder(d),0),b.isAromatic()&&(this.ms.someModelsHaveAromaticBonds=!0));this.ms.bondCount==this.ms.bo.length&&(this.ms.bo=JU.AU.arrayCopyObject(this.ms.bo,this.ms.bondCount+250));this.ms.setBond(this.ms.bondCount++,b);return b},"~O,~O,~N");c(c$,"initializeUnitCellAndSymmetry",
function(){this.someModelsAreModulated&&null==this.ms.bsModulated&&(this.ms.bsModulated=new JU.BS);if(this.someModelsHaveUnitcells){this.ms.unitCells=Array(this.ms.mc);this.ms.haveUnitCells=!0;for(var a=null!=this.mergeModelSet&&null!=this.mergeModelSet.unitCells,b=0,d=0;b<this.ms.mc;b++)if(a&&b<this.baseModelCount)this.ms.unitCells[b]=this.mergeModelSet.unitCells[b];else{this.ms.unitCells[b]=J.api.Interface.getSymmetry(this.vwr,"file");var c=null;if(this.isTrajectory){var g=this.ms.getInfoM("unitCells");
null!=g&&(c=g.get(d++))}this.ms.unitCells[b].setSymmetryInfo(b,this.ms.getModelAuxiliaryInfo(b),c)}}if(this.appendNew&&this.ms.someModelsHaveSymmetry){this.ms.getAtoms(1089470478,null);a=this.ms.at;b=this.baseAtomIndex;d=-1;for(c=0;b<this.ms.ac;b++)a[b].mi!=d&&(d=a[b].mi,c=this.baseAtomIndex+this.ms.getInfoI(d,"presymmetryAtomIndex")+this.ms.getInfoI(d,"presymmetryAtomCount")),b>=c&&this.ms.bsSymmetry.set(b)}if(this.appendNew&&this.ms.someModelsHaveFractionalCoordinates){for(var a=this.ms.at,c=-1,
d=null,g=!1,e=!this.vwr.getBoolean(603979875),b=this.baseAtomIndex;b<this.ms.ac;b++)a[b].mi!=c&&(c=a[b].mi,d=this.ms.getUnitCell(c),g=null!=d&&d.getCoordinatesAreFractional()),g&&(d=a[b].getUnitCell(),d.toCartesian(d.toSupercell(a[b]),!1),e&&JU.PT.fixPtFloats(a[b],1E4));for(a=this.baseModelIndex;a<this.ms.mc;a++)if(this.ms.isTrajectory(a)&&(d=this.ms.getUnitCell(a),null!=d&&d.getCoordinatesAreFractional()&&d.isSupercell())){c=this.ms.trajectorySteps.get(a);for(b=c.length;0<=--b;)null!=c[b]&&d.toSupercell(c[b])}}});
c(c$,"initializeBonding",function(){var a=null==this.ms.getInfoM("someModelsHaveCONECT")?null:new JU.BS;null!=a&&this.ms.setPdbConectBonding(this.baseAtomIndex,this.baseModelIndex,a);var b=0,d=this.vwr.getBoolean(603979794),c=this.vwr.getBoolean(603979798),g=this.vwr.getBoolean(603979846),e=null,h=!1,l=this.ms.mc,j=this.ms.am;if(!this.noAutoBond)for(var n=this.baseModelIndex;n<l;n++){var b=j[n].bsAtoms.cardinality(),m=this.ms.getInfoI(n,"initialBondCount"),r=j[n].isBioModel;0>m&&(m=this.ms.bondCount);
var p=this.ms.getInfoB(n,"hasSymmetry");if(g||c&&(0==m||r&&null==this.jmolData&&(this.ms.getMSInfoB("havePDBHeaderName")||m<x(b/2))||p&&!d&&!this.ms.getInfoB(n,"hasBonds")))if(h=!0,this.merging||1<l)null==e&&(e=JU.BS.newN(this.ms.ac)),(n==this.baseModelIndex||!this.isTrajectory)&&e.or(j[n].bsAtoms)}this.modulationOn&&this.ms.setModulation(null,!0,this.modulationTUV,!1);h?(this.ms.autoBondBs4(e,e,a,null,this.ms.defaultCovalentMad,this.vwr.getBoolean(603979873)),JU.Logger.info("ModelSet: autobonding; use  autobond=false  to not generate bonds automatically")):
(this.ms.initializeBspf(),JU.Logger.info("ModelSet: not autobonding; use  forceAutobond=true  to force automatic bond creation"))});c(c$,"finalizeGroupBuild",function(){this.groups=Array(this.groupCount);if(this.merging)for(var a=0;a<this.$mergeGroups.length;a++)(this.groups[a]=this.$mergeGroups[a]).chain.model.ms=this.ms;for(a=this.baseGroupIndex;a<this.groupCount;++a)this.distinguishAndPropagateGroup(a,this.chainOf[a],this.group3Of[a],this.seqcodes[a],this.firstAtomIndexes[a],a==this.groupCount-
1?this.ms.ac:this.firstAtomIndexes[a+1]);if(null!=this.group3Lists&&null!=this.ms.msInfo){this.ms.msInfo.put("group3Lists",this.group3Lists);this.ms.msInfo.put("group3Counts",this.group3Counts);for(a=0;a<this.group3Counts.length;a++)null==this.group3Counts[a]&&(this.group3Counts[a]=E(0,0))}});c(c$,"distinguishAndPropagateGroup",function(a,b,d,c,g,e){var h=e-1;if(h<g)throw new NullPointerException;var l=this.ms.at[g].mi,j=null==d||null==this.jbr?null:this.jbr.distinguishAndPropagateGroup(b,d,c,g,e,
l,this.specialAtomIndexes,this.ms.at);null==j?(j=(new JM.Group).setGroup(b,d,c,g,h),null!=this.jbr&&(j.groupID=this.jbr.getGroupID(d)),c="o>"):c=j.isProtein()?"p>":j.isNucleic()?"n>":j.isCarbohydrate()?"c>":"o>";null!=d&&(this.countGroup(l,c,d),j.isNucleic()&&(d=null==this.htGroup1?null:this.htGroup1.get(d),null!=d&&(j.group1=d.charAt(0))));this.addGroup(b,j);this.groups[a]=j;j.groupIndex=a;for(a=e;--a>=g;)this.ms.at[a].setGroup(j)},"~N,JM.Chain,~S,~N,~N,~N");c(c$,"addGroup",function(a,b){a.groupCount==
a.groups.length&&(a.groups=JU.AU.doubleLength(a.groups));a.groups[a.groupCount++]=b},"JM.Chain,JM.Group");c(c$,"countGroup",function(a,b,d){var c=a+1;if(!(null==this.group3Lists||null==this.group3Lists[c])){var g=(d+"   ").substring(0,3),e=this.group3Lists[c].indexOf(g);0>e&&(this.group3Lists[c]+=",["+g+"]",e=this.group3Lists[c].indexOf(g),this.group3Counts[c]=JU.AU.arrayCopyI(this.group3Counts[c],this.group3Counts[c].length+10));this.group3Counts[c][x(e/6)]++;e=this.group3Lists[c].indexOf(",["+g);
0<=e&&(this.group3Lists[c]=this.group3Lists[c].substring(0,e)+b+this.group3Lists[c].substring(e+2));0<=a&&this.countGroup(-1,b,d)}},"~N,~S,~S");c(c$,"freeze",function(){this.htAtomMap.clear();this.ms.ac<this.ms.at.length&&this.ms.growAtomArrays(this.ms.ac);this.ms.bondCount<this.ms.bo.length&&(this.ms.bo=JU.AU.arrayCopyObject(this.ms.bo,this.ms.bondCount));for(var a=5;0<--a;){this.ms.numCached[a]=0;for(var b=this.ms.freeBonds[a],d=b.length;0<=--d;)b[d]=null}this.ms.setAtomNamesAndNumbers(0,this.baseAtomIndex,
this.mergeModelSet);this.findElementsPresent();this.ms.resetMolecules();this.currentChain=this.model=null;!this.ms.haveBioModels||this.isPyMOLsession?this.ms.freezeModels():(a=this.vwr.getBoolean(603979826),a=this.ms.calculateStructuresAllExcept(this.structuresDefinedInFile,a,!1,!0,!0,a),0<a.length&&JU.Logger.info(a))});c(c$,"findElementsPresent",function(){this.ms.elementsPresent=Array(this.ms.mc);for(var a=0;a<this.ms.mc;a++)this.ms.elementsPresent[a]=JU.BS.newN(64);for(a=this.ms.ac;0<=--a;){var b=
this.ms.at[a].getAtomicAndIsotopeNumber();b>=JU.Elements.elementNumberMax&&(b=JU.Elements.elementNumberMax+JU.Elements.altElementIndexFromNumber(b));this.ms.elementsPresent[this.ms.at[a].mi].set(b)}});c(c$,"applyStereochemistry",function(){this.set2dZ(this.baseAtomIndex,this.ms.ac);if(null!=this.vStereo){var a=new JU.BS;a.setBits(this.baseAtomIndex,this.ms.ac);for(var b=this.vStereo.size();0<=--b;){var d=this.vStereo.get(b),c=1025==d.order?3:-3;d.order=1;d.atom2.z!=d.atom1.z&&0>c==d.atom2.z<d.atom1.z&&
(c/=3);var g=JU.JmolMolecule.getBranchBitSet(this.ms.at,d.atom2.i,a,null,d.atom1.i,!1,!0);g.set(d.atom2.i);for(var e=g.nextSetBit(0);0<=e;e=g.nextSetBit(e+1))this.ms.at[e].z+=c;d.atom2.x=(d.atom1.x+d.atom2.x)/2;d.atom2.y=(d.atom1.y+d.atom2.y)/2}this.vStereo=null}this.is2D=!1});c(c$,"set2dZ",function(a,b){var d=JU.BS.newN(b),c=new JU.BS,g=new JU.V3,e=JU.V3.new3(0,1,0),h=new JU.V3,l=new JU.BS;l.setBits(a,b);for(var j=a;j<b;j++)!d.get(j)&&!c.get(j)&&(c=this.getBranch2dZ(j,-1,l,c,g,e,h),d.or(c))},"~N,~N");
c(c$,"getBranch2dZ",function(a,b,d,c,g,e,h){c=JU.BS.newN(this.ms.ac);if(0>a)return c;var l=new JU.BS;l.or(d);0<=b&&l.clear(b);JM.ModelLoader.setBranch2dZ(this.ms.at[a],c,l,g,e,h);return c},"~N,~N,JU.BS,JU.BS,JU.V3,JU.V3,JU.V3");c$.setBranch2dZ=c(c$,"setBranch2dZ",function(a,b,d,c,g,e){var h=a.i;if(d.get(h)&&(d.clear(h),b.set(h),null!=a.bonds))for(h=a.bonds.length;0<=--h;){var l=a.bonds[h];l.isHydrogen()||(l=l.getOtherAtom(a),JM.ModelLoader.setAtom2dZ(a,l,c,g,e),JM.ModelLoader.setBranch2dZ(l,b,d,c,
g,e))}},"JM.Atom,JU.BS,JU.BS,JU.V3,JU.V3,JU.V3");c$.setAtom2dZ=c(c$,"setAtom2dZ",function(a,b,d,c,g){d.sub2(b,a);d.z=0;d.normalize();g.cross(c,d);d=Math.acos(d.dot(c));b.z=a.z+0.8*Math.sin(4*d)},"JM.Atom,JM.Atom,JU.V3,JU.V3,JU.V3");c(c$,"finalizeShapes",function(){this.ms.sm=this.vwr.shm;this.ms.sm.setModelSet(this.ms);this.ms.setBsHidden(this.vwr.slm.getHiddenSet());this.merging||this.ms.sm.resetShapes();this.ms.sm.loadDefaultShapes(this.ms);this.ms.someModelsHaveAromaticBonds&&this.vwr.getBoolean(603979944)&&
this.ms.assignAromaticBondsBs(!1,null);this.merging&&1==this.baseModelCount&&this.ms.sm.setShapePropertyBs(6,"clearModelIndex",null,null)});c(c$,"undeleteAtom",function(a){this.ms.at[a].valence=0},"~N");c$.createAtomDataSet=c(c$,"createAtomDataSet",function(a,b,d,c,g){if(null==c)return null;var e=a.getModelAdapter(),h=new JU.P3,l=b.at,j=a.getFloat(570425363);if(null!=b.unitCells)for(var n=g.nextSetBit(0);0<=n;n=g.nextSetBit(n+1))if(null!=l[n].atomSymmetry){j=-j;break}for(var n=-1,m=0,r=JU.BSUtil.cardinalityOf(g)==
a.ms.ac,p=e.getAtomIterator(c);p.hasNext();){var w=p.getXYZ();if(!Float.isNaN(w.x+w.y+w.z))if(1146095626==d){n=g.nextSetBit(n+1);if(0>n)break;m++;JU.Logger.debugging&&JU.Logger.debug("atomIndex = "+n+": "+l[n]+" --\x3e ("+w.x+","+w.y+","+w.z);b.setAtomCoord(n,w.x,w.y,w.z)}else{h.setT(w);w=JU.BS.newN(b.ac);b.getAtomsWithin(j,h,w,-1);w.and(g);if(r)if(m=JU.BSUtil.cardinalityOf(w),0==m){JU.Logger.warn("createAtomDataSet: no atom found at position "+h);continue}else 1<m&&JU.Logger.debugging&&JU.Logger.debug("createAtomDataSet: "+
m+" atoms found at position "+h);switch(d){case 1146095631:var q=p.getVib();if(null==q)continue;JU.Logger.debugging&&JU.Logger.debug("xyz: "+h+" vib: "+q);b.setAtomCoords(w,1146095631,q);break;case 1129318401:b.setAtomProperty(w,d,0,p.getOccupancy(),null,null,null);break;case 1112541195:b.setAtomProperty(w,d,0,p.getPartialCharge(),null,null,null);break;case 1112541196:b.setAtomProperty(w,d,0,p.getBfactor(),null,null,null)}}}switch(d){case 1146095631:b=e.getAtomSetName(c,0);JU.Logger.info("_vibrationName = "+
b);a.setStringProperty("_vibrationName",b);break;case 1146095626:if(JU.Logger.info(m+" atom positions read"),b.recalculateLeadMidpointsAndWingVectors(-1),m==b.ac)return"boundbox {*};reset"}return null},"JV.Viewer,JM.ModelSet,~N,~O,JU.BS");C(c$,"defaultGroupCount",32)}),u("JM"),v(["JM.BondCollection"],"JM.ModelSet","java.lang.Boolean $.Float java.util.Hashtable JU.A4 $.AU $.BS $.Lst $.M3 $.M4 $.Measure $.P3 $.P4 $.PT $.Quat $.SB $.V3 J.api.Interface $.JmolModulationSet J.atomdata.RadiusData J.bspt.Bspf J.c.PAL $.VDW JM.Atom $.AtomIteratorWithinModel $.AtomIteratorWithinModelSet $.Bond $.BondSet $.HBond $.Model $.StateScript JS.SV JU.BSUtil $.BoxInfo $.Elements $.Escape $.JmolMolecule $.Logger $.SimpleUnitCell JV.JC".split(" "),
function(){c$=s(function(){this.am=this.modelSetName=this.bsSymmetry=null;this.mc=0;this.unitCells=this.bioModel=null;this.haveUnitCells=!1;this.elementsPresent=this.frameTitles=this.modelNames=this.modelNumbersForAtomLabel=this.modelFileNumbers=this.modelNumbers=this.closest=null;this.haveBioModels=this.isXYZ=!1;this.msInfo=this.modelSetProperties=null;this.isBbcageDefault=this.someModelsHaveFractionalCoordinates=this.someModelsHaveAromaticBonds=this.someModelsHaveSymmetry=!1;this.stateScripts=this.boxInfo=
this.bboxAtoms=this.bboxModels=null;this.thisStateModel=0;this.selectedMolecules=this.vibrationSteps=this.trajectorySteps=null;this.showRebondTimes=!0;this.sm=this.bsAll=null;this.proteinStructureTainted=!1;this.vTemp=this.mat4t=this.mat4=this.matInv=this.matTemp=this.ptTemp2=this.ptTemp1=this.ptTemp=this.triangulator=this.vOrientations=this.htPeaks=this.symTemp=null;this.echoShapeActive=this.selectionHaloEnabled=!1;this.pointGroup=this.modelSetTypeName=null;this.maxBondWarned=!1;p(this,arguments)},
JM,"ModelSet",JM.BondCollection);t(c$,function(a,b){this.vwr=a;this.modelSetName=b;this.selectedMolecules=new JU.BS;this.stateScripts=new JU.Lst;this.boxInfo=new JU.BoxInfo;this.boxInfo.addBoundBoxPoint(JU.P3.new3(-10,-10,-10));this.boxInfo.addBoundBoxPoint(JU.P3.new3(10,10,10));this.am=Array(1);this.modelNumbers=E(1,0);this.modelFileNumbers=E(1,0);this.modelNumbersForAtomLabel=Array(1);this.modelNames=Array(1);this.frameTitles=Array(1);this.closest=Array(1);this.ptTemp=new JU.P3;this.ptTemp1=new JU.P3;
this.ptTemp2=new JU.P3;this.matTemp=new JU.M3;this.matInv=new JU.M3;this.mat4=new JU.M4;this.mat4t=new JU.M4;this.vTemp=new JU.V3;this.setupBC()},"JV.Viewer,~S");j(c$,"releaseModelSet",function(){this.am=null;this.unitCells=this.bsAll=this.bsSymmetry=this.am=this.closest[0]=null;this.releaseModelSetBC()});c(c$,"setSelectionHaloEnabled",function(a){this.selectionHaloEnabled=a},"~B");c(c$,"getSelectionHaloEnabled",function(){return this.selectionHaloEnabled});c(c$,"getEchoStateActive",function(){return this.echoShapeActive});
c(c$,"setEchoStateActive",function(a){this.echoShapeActive=a},"~B");c(c$,"getModelSetTypeName",function(){return this.modelSetTypeName});c(c$,"getModelNumberIndex",function(a,b,d){if(b){for(b=0;b<this.mc;b++)if(this.modelNumbers[b]==a||1E6>a&&this.modelNumbers[b]==1E6+a)return b;return-1}for(b=0;b<this.mc;b++)if(this.modelFileNumbers[b]==a)return d&&this.isTrajectory(b)&&this.setTrajectory(b),b;return-1},"~N,~B,~B");c(c$,"getBitSetTrajectories",function(){if(null==this.trajectorySteps)return null;
for(var a=new JU.BS,b=this.mc;0<=--b;){var d=this.am[b].selectedTrajectory;0<=d&&(a.set(d),b=this.am[b].trajectoryBaseIndex)}return a});c(c$,"setTrajectoryBs",function(a){for(var b=0;b<this.mc;b++)a.get(b)&&this.setTrajectory(b)},"JU.BS");c(c$,"setTrajectory",function(a){if(!(0>a)&&this.isTrajectory(a)&&this.at[this.am[a].firstAtomIndex].mi!=a){var b=this.am[a].trajectoryBaseIndex;this.am[b].selectedTrajectory=a;this.setAtomPositions(b,a,this.trajectorySteps.get(a),null,0,null==this.vibrationSteps?
null:this.vibrationSteps.get(a),!0);b=this.vwr.am.cmi;0<=b&&(b!=a&&this.am[b].fileIndex==this.am[a].fileIndex)&&this.vwr.setCurrentModelIndexClear(a,!1)}},"~N");c(c$,"morphTrajectories",function(a,b,d){if(!(0>a||0>b||!this.isTrajectory(a)||!this.isTrajectory(b)))if(0==d)this.setTrajectory(a);else if(1==d)this.setTrajectory(b);else{var c=this.am[a].trajectoryBaseIndex;this.am[c].selectedTrajectory=a;this.setAtomPositions(c,a,this.trajectorySteps.get(a),this.trajectorySteps.get(b),d,null==this.vibrationSteps?
null:this.vibrationSteps.get(a),!0);b=this.vwr.am.cmi;0<=b&&(b!=a&&this.am[b].fileIndex==this.am[a].fileIndex)&&this.vwr.setCurrentModelIndexClear(a,!1)}},"~N,~N,~N");c(c$,"setAtomPositions",function(a,b,d,c,g,e,h){var l=new JU.BS,j=new JU.V3,n=this.am[a].firstAtomIndex,m=n+this.getAtomCountInModel(a);if(0==g)for(var r=0;n<m&&r<d.length;n++,r++)this.at[n].mi=b,null!=d[r]&&(h?this.at[n].setFractionalCoordTo(d[r],!0):this.at[n].setT(d[r]),null!=this.vibrationSteps&&(null!=e&&null!=e[r]&&(j=e[r]),this.setVibrationVector(n,
j)),l.set(n));else{e=new JU.P3;j=Math.min(d.length,c.length);for(r=0;n<m&&r<j;n++,r++)this.at[n].mi=b,null==d[r]||null==c[r]||(e.sub2(c[r],d[r]),e.scaleAdd2(g,e,d[r]),h?this.at[n].setFractionalCoordTo(e,!0):this.at[n].setT(e),l.set(n))}this.initializeBspf();this.validateBspfForModel(a,!1);this.recalculateLeadMidpointsAndWingVectors(a);this.sm.refreshShapeTrajectories(a,l,null);this.am[a].hasRasmolHBonds&&this.bioModel.resetRasmolBonds(this.am[a],l)},"~N,~N,~A,~A,~N,~A,~B");c(c$,"getFrameOffsets",
function(a){if(null==a)return null;for(var b=Array(this.mc),d=0;d<this.mc;d++)b[d]=new JU.P3;for(var c=0,g=0,e=b[0],h=null!=this.trajectorySteps&&this.trajectorySteps.size()==this.mc,l=h?this.mc:1,j=0;j<l;j++){h&&this.setTrajectory(j);for(d=0;d<=this.ac;d++){if(d==this.ac||this.at[d].mi!=c){0<g&&(e.scale(-1/g),0!=c&&e.sub(b[0]),g=0);if(d==this.ac)break;c=this.at[d].mi;e=b[c]}a.get(d)&&(e.add(this.at[d]),g++)}}b[0].set(0,0,0);return b},"JU.BS");c(c$,"getAtoms",function(a,b){switch(a){default:return JU.BSUtil.andNot(this.getAtomBitsMaybeDeleted(a,
b),this.vwr.slm.bsDeleted);case 1048610:var d=b.intValue(),c=this.getModelNumberIndex(d,!0,!0);return 0>c&&0<d?new JU.BS:this.vwr.getModelUndeletedAtomsBitSet(c)}},"~N,~O");c(c$,"findNearestAtomIndex",function(a,b,d,c){if(0==this.ac)return-1;this.closest[0]=null;this.g3d.isAntialiased()&&(a<<=1,b<<=1);this.findNearest2(a,b,this.closest,d,c);this.sm.findNearestShapeAtomIndex(a,b,this.closest,d);a=null==this.closest[0]?-1:this.closest[0].i;this.closest[0]=null;return a},"~N,~N,JU.BS,~N");c(c$,"calculatePointGroup",
function(a){return this.calculatePointGroupForFirstModel(a,!1,!1,!1,null,0,0)},"JU.BS");c(c$,"getPointGroupInfo",function(a){return this.calculatePointGroupForFirstModel(a,!1,!1,!0,null,0,0)},"JU.BS");c(c$,"getPointGroupAsString",function(a,b,d,c,g){return this.calculatePointGroupForFirstModel(a,!0,b,!1,d,c,g)},"JU.BS,~B,~S,~N,~N");c(c$,"calculatePointGroupForFirstModel",function(a,b,d,c,g,e,h){var l=this.vwr.am.cmi,j=null==a?-1:a.nextSetBit(0);0>l&&0<=j&&(l=this.at[j].mi);0>l&&(l=this.vwr.getVisibleFramesBitSet().nextSetBit(0),
a=null);var n=this.vwr.getModelUndeletedAtomsBitSet(l);null!=a&&n.and(a);j=n.nextSetBit(0);0>j&&(n=this.vwr.getModelUndeletedAtomsBitSet(l),j=n.nextSetBit(0));a=this.vwr.shm.getShapePropertyIndex(18,"mad",j);a=null!=a&&0!=a.intValue()||this.vwr.tm.vibrationOn;this.pointGroup=J.api.Interface.getSymmetry(this.vwr,"ms").setPointGroup(this.pointGroup,this.at,n,a,this.vwr.getFloat(570425382),this.vwr.getFloat(570425384));if(!b&&!c)return this.pointGroup.getPointGroupName();b=this.pointGroup.getPointGroupInfo(l,
d,c,g,e,h);return c?b:(1<this.mc?"frame "+this.getModelNumberDotted(l)+"; ":"")+b},"JU.BS,~B,~B,~B,~S,~N,~N");c(c$,"modelsOf",function(a,b){for(var d=JU.BS.newN(this.mc),c=null==a,g=c?this.ac-1:a.nextSetBit(0);0<=g;g=c?g-1:a.nextSetBit(g+1)){var e=this.am[this.at[g].mi].trajectoryBaseIndex;this.isJmolDataFrameForModel(e)||(d.set(e),b.set(g))}return d},"JU.BS,JU.BS");c(c$,"getDefaultStructure",function(a,b){for(var d=this.modelsOf(a,b),c=new JU.SB,g=d.nextSetBit(0);0<=g;g=d.nextSetBit(g+1))this.am[g].isBioModel&&
null!=this.am[g].defaultStructure&&c.append(this.am[g].defaultStructure);return c.toString()},"JU.BS,JU.BS");c(c$,"makeConnections",function(a,b,d,c,g,e,h,l,j,n){if(1073741852==c&&2048!=d){var m="connect ";0.1!=a&&(m+=a+" ");1E8!=b&&(m+=b+" ");this.addStateScript(m,l?g:null,l?null:g,l?null:e," auto",!1,!0)}this.moleculeCount=0;return this.makeConnections2(a,b,d,c,g,e,h,l,j,n)},"~N,~N,~N,~N,JU.BS,JU.BS,JU.BS,~B,~B,~N");c(c$,"setPdbConectBonding",function(a,b,d){for(var c=this.vwr.getMadBond();b<this.mc;b++){var g=
this.getInfo(b,"PDB_CONECT_bonds");if(null!=g){var e=g.size();this.setInfo(b,"initialBondCount",Integer.$valueOf(e));for(var h=this.getInfo(b,"PDB_CONECT_firstAtom_count_max"),l=h[0]+a,j=l+h[1],h=h[2],n=E(h+1,0),m=l;m<j;m++)if(0<(l=this.atomSerials[m]))n[l]=m+1;for(j=0;j<e;j++){var l=g.get(j),m=l[0],r=l[1],l=l[2];if(!(0>m||0>r||m>h||r>h))if(m=n[m]-1,r=n[r]-1,!(0>m||0>r)){var p=this.at[m],w=this.at[r];null!=d&&(p.isHetero()&&d.set(m),w.isHetero()&&d.set(r));if(p.altloc==w.altloc||"\x00"==p.altloc||
"\x00"==w.altloc)this.getOrAddBond(p,w,l,2048==l?1:c,null,0,!1)}}}}},"~N,~N,JU.BS");c(c$,"deleteAllBonds",function(){this.moleculeCount=0;for(var a=this.stateScripts.size();0<=--a;)this.stateScripts.get(a).isConnect()&&this.stateScripts.remove(a);this.deleteAllBonds2()});c(c$,"includeAllRelatedFrames",function(a){for(var b,d=0;d<this.mc;d++)if(a.get(d)){if(this.isTrajectory(d)&&!a.get(b=this.am[d].trajectoryBaseIndex)){a.set(b);this.includeAllRelatedFrames(a);break}}else(this.isTrajectory(d)&&a.get(this.am[d].trajectoryBaseIndex)||
this.isJmolDataFrameForModel(d)&&a.get(this.am[d].dataSourceFrame))&&a.set(d)},"JU.BS");c(c$,"deleteModels",function(a){this.moleculeCount=0;this.includeAllRelatedFrames(a);var b=JU.BSUtil.cardinalityOf(a);if(0==b)return null;for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1))this.clearDataFrameReference(d);if(b==this.mc)return b=this.getModelAtomBitSetIncludingDeleted(-1,!0),this.vwr.zap(!0,!1,!1),b;this.validateBspf(!1);for(var c=Array(this.mc-b),g=this.am,b=new JU.BS,e=d=0;d<this.mc;d++)a.get(d)?
(this.getAtomCountInModel(d),b.or(this.getModelAtomBitSetIncludingDeleted(d,!1))):(this.am[d].modelIndex=e,c[e++]=this.am[d]);this.am=c;var h=this.mc,l=this.getBondsForSelectedAtoms(b,!0);this.deleteBonds(l,!0);for(e=d=0;d<h;d++)if(a.get(d)){var j=g[d].ac;if(0!=j){var n=g[d].bsAtoms,m=g[d].firstAtomIndex;JU.BSUtil.deleteBits(this.bsSymmetry,n);this.deleteModel(e,m,j,n,l);for(var r=h;--r>d;)g[r].fixIndices(e,j,n);this.vwr.shm.deleteShapeAtoms([c,this.at,[e,m,j]],n);this.mc--}}else e++;this.deleteModel(-1,
0,0,null,null);return b},"JU.BS");c(c$,"setAtomProperty",function(a,b,d,c,g,e,h){switch(b){case 1115297793:case 1113200642:case 1113200647:case 1113200649:case 1113200650:case 1650071565:case 1113200654:if(4<c&&(c=4),null!=e){d=M(this.ac,0);try{var l=a.nextSetBit(0);for(g=0;0<=l;l=a.nextSetBit(l+1))d[l]=e[g++]}catch(j){if(B(j,Exception))return;throw j;}e=d}case 1113200646:case 1113200652:l=null;d=0;null==e?(16<c&&(c=16.1),0>c&&(c=0),d=x(Math.floor(2E3*c))):l=new J.atomdata.RadiusData(e,0,null,null);
this.sm.setShapeSizeBs(JV.JC.shapeTokenIndex(b),d,l,a);return}this.setAPm(a,b,d,c,g,e,h)},"JU.BS,~N,~N,~N,~S,~A,~A");c(c$,"getFileData",function(a){if(0>a)return"";var b=this.getInfo(a,"fileData");if(null!=b)return b;if(!this.getInfoB(a,"isCIF"))return this.getPDBHeader(a);b=this.vwr.getCifData(a);this.setInfo(a,"fileData",b);return b},"~N");c(c$,"addHydrogens",function(a,b){var d=this.mc-1,c=new JU.BS;if(this.isTrajectory(d)||1<this.am[d].getGroupCount())return c;this.growAtomArrays(this.ac+b.length);
var g=this.vwr.rd,e=this.getDefaultMadFromOrder(1);this.am[d].dssrCache=null;for(var h=0,j=this.am[d].ac+1;h<a.size();h++,j++){var k=a.get(h),n=this.addAtom(d,k.group,1,"H"+j,null,j,k.getSeqID(),j,b[h],NaN,null,0,0,100,NaN,null,!1,0,null);n.setMadAtom(this.vwr,g);c.set(n.i);this.bondAtoms(k,n,1,e,null,0,!1,!1)}this.sm.loadDefaultShapes(this);return c},"JU.Lst,~A");c(c$,"mergeModelArrays",function(a){this.at=a.at;this.bo=a.bo;this.stateScripts=a.stateScripts;this.proteinStructureTainted=a.proteinStructureTainted;
this.thisStateModel=-1;this.bsSymmetry=a.bsSymmetry;this.modelFileNumbers=a.modelFileNumbers;this.modelNumbersForAtomLabel=a.modelNumbersForAtomLabel;this.modelNames=a.modelNames;this.modelNumbers=a.modelNumbers;this.frameTitles=a.frameTitles;this.mergeAtomArrays(a)},"JM.ModelSet");c(c$,"getUnitCell",function(a){return!this.haveUnitCells||0>a||a>=this.mc?null:null!=this.am[a].simpleCage?this.am[a].simpleCage:null==this.unitCells||a>=this.unitCells.length||!this.unitCells[a].haveUnitCell()?null:this.unitCells[a]},
"~N");c(c$,"setModelCage",function(a,b){0>a||a>=this.mc||(this.am[a].simpleCage=b,this.haveUnitCells=!0)},"~N,J.api.SymmetryInterface");c(c$,"getPlaneIntersection",function(a,b,d,c,g){var e=null;switch(a){case 1614417948:if(null==g)return null;e=g.getCanonicalCopy(d,!0);break;case 1679429641:e=this.boxInfo.getCanonicalCopy(d)}a=new JU.Lst;a.addLast(e);return this.intersectPlane(b,a,c)},"~N,JU.P4,~N,~N,J.api.SymmetryInterface");c(c$,"getModelName",function(a){return 1>this.mc?"":0<=a?this.modelNames[a]:
this.modelNumbersForAtomLabel[-1-a]},"~N");c(c$,"getModelTitle",function(a){return this.getInfo(a,"title")},"~N");c(c$,"getModelFileName",function(a){return this.getInfo(a,"fileName")},"~N");c(c$,"getModelFileType",function(a){return this.getInfo(a,"fileType")},"~N");c(c$,"setFrameTitle",function(a,b){if(q(b,String))for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1))this.frameTitles[d]=b;else for(var d=a.nextSetBit(0),c=0;0<=d;d=a.nextSetBit(d+1))c<b.length&&(this.frameTitles[d]=b[c++])},"JU.BS,~O");
c(c$,"getFrameTitle",function(a){return 0<=a&&a<this.mc?this.frameTitles[a]:""},"~N");c(c$,"getModelNumberForAtomLabel",function(a){return this.modelNumbersForAtomLabel[a]},"~N");c(c$,"getGroups",function(){for(var a=0,b=0;b<this.mc;b++)a+=this.am[b].getGroupCount();for(var a=Array(a),d=b=0;b<this.mc;b++)for(var c=0;c<this.am[b].chainCount;c++)for(var g=0;g<this.am[b].chains[c].groupCount;g++)a[d]=this.am[b].chains[c].groups[g],a[d].groupIndex=d,d++;return a});c(c$,"getNotionalUnitcell",function(){var a=
this.getUnitCell(0);return null==a?null:a.getNotionalUnitCell()});c(c$,"setCrystallographicDefaults",function(){return!this.haveBioModels&&this.someModelsHaveSymmetry&&this.someModelsHaveFractionalCoordinates});c(c$,"getBoundBoxCenter",function(a){return this.isJmolDataFrameForModel(a)?new JU.P3:this.boxInfo.getBoundBoxCenter()},"~N");c(c$,"getBoundBoxCornerVector",function(){return this.boxInfo.getBoundBoxCornerVector()});c(c$,"getBBoxVertices",function(){return this.boxInfo.getBoundBoxVertices()});
c(c$,"setBoundBox",function(a,b,d,c){this.isBbcageDefault=!1;this.bboxAtoms=this.bboxModels=null;this.boxInfo.setBoundBox(a,b,d,c)},"JU.P3,JU.P3,~B,~N");c(c$,"getBoundBoxCommand",function(a){if(!a&&null!=this.bboxAtoms)return"boundbox "+JU.Escape.eBS(this.bboxAtoms);this.ptTemp.setT(this.boxInfo.getBoundBoxCenter());var b=this.boxInfo.getBoundBoxCornerVector();a=a?"boundbox "+JU.Escape.eP(this.ptTemp)+" "+JU.Escape.eP(b)+"\n#or\n":"";this.ptTemp.sub(b);a+="boundbox corners "+JU.Escape.eP(this.ptTemp)+
" ";this.ptTemp.scaleAdd2(2,b,this.ptTemp);b=Math.abs(8*b.x*b.y*b.z);return a+=JU.Escape.eP(this.ptTemp)+" # volume = "+b},"~B");c(c$,"findAtomsInRectangle",function(a){for(var b=this.vwr.getVisibleFramesBitSet(),d=new JU.BS,c=this.ac;0<=--c;){var g=this.at[c];b.get(g.mi)?g.checkVisible()&&a.contains(g.sX,g.sY)&&d.set(c):c=this.am[g.mi].firstAtomIndex}return d},"JU.Rectangle");c(c$,"getDefaultVdwType",function(a){return!this.am[a].isBioModel?J.c.VDW.AUTO_BABEL:0==this.am[a].hydrogenCount?J.c.VDW.AUTO_JMOL:
J.c.VDW.AUTO_BABEL},"~N");c(c$,"setRotationRadius",function(a,b){return this.isJmolDataFrameForModel(a)?(this.am[a].defaultRotationRadius=b,!1):!0},"~N,~N");c(c$,"calcRotationRadius",function(a,b){if(this.isJmolDataFrameForModel(a)){var d=this.am[a].defaultRotationRadius;return 0==d?10:d}for(var d=0,c=this.ac;0<=--c;)if(this.isJmolDataFrameForAtom(this.at[c]))for(a=this.at[c].mi;0<=c&&this.at[c].mi==a;)c--;else{var g=this.at[c],g=b.distance(g)+this.getRadiusVdwJmol(g);g>d&&(d=g)}return 0==d?10:d},
"~N,JU.P3");c(c$,"calcBoundBoxDimensions",function(a,b){null!=a&&0>a.nextSetBit(0)&&(a=null);null==a&&this.isBbcageDefault||0==this.ac||(this.bboxModels=this.getModelBS(this.bboxAtoms=JU.BSUtil.copy(a),!1),this.calcAtomsMinMax(a,this.boxInfo)==this.ac&&(this.isBbcageDefault=!0),null==a&&null!=this.unitCells&&this.calcUnitCellMinMax(),this.boxInfo.setBbcage(b))},"JU.BS,~N");c(c$,"getBoxInfo",function(a,b){if(null==a)return this.boxInfo;var d=new JU.BoxInfo;this.calcAtomsMinMax(a,d);d.setBbcage(b);
return d},"JU.BS,~N");c(c$,"calcAtomsMinMax",function(a,b){b.reset();for(var d=0,c=null==a,g=c?this.ac-1:a.nextSetBit(0);0<=g;g=c?g-1:a.nextSetBit(g+1))d++,this.isJmolDataFrameForAtom(this.at[g])||b.addBoundBoxPoint(this.at[g]);return d},"JU.BS,JU.BoxInfo");c(c$,"calcUnitCellMinMax",function(){for(var a=0;a<this.mc;a++)if(this.unitCells[a].getCoordinatesAreFractional())for(var b=this.unitCells[a].getUnitCellVertices(),d=0;8>d;d++)this.boxInfo.addBoundBoxPoint(b[d])});c(c$,"calcRotationRadiusBs",function(a){for(var b=
this.getAtomSetCenter(a),d=0,c=a.nextSetBit(0);0<=c;c=a.nextSetBit(c+1)){var g=this.at[c],g=b.distance(g)+this.getRadiusVdwJmol(g);g>d&&(d=g)}return 0==d?10:d},"JU.BS");c(c$,"getCenterAndPoints",function(a,b){for(var d,c,g=b?1:0,e=a.size();0<=--e;){var h=a.get(e);d=h[0];q(h[1],JU.BS)?(c=h[1],g+=Math.min(d.cardinality(),c.cardinality())):g+=Math.min(d.cardinality(),h[1].length)}var j=P(2,g,null);b&&(j[0][0]=new JU.P3,j[1][0]=new JU.P3);for(e=a.size();0<=--e;)if(h=a.get(e),d=h[0],q(h[1],JU.BS)){c=h[1];
for(var h=d.nextSetBit(0),k=c.nextSetBit(0);0<=h&&0<=k;h=d.nextSetBit(h+1),k=c.nextSetBit(k+1))j[0][--g]=this.at[h],j[1][g]=this.at[k],b&&(j[0][0].add(this.at[h]),j[1][0].add(this.at[k]))}else{c=h[1];h=d.nextSetBit(0);for(k=0;0<=h&&k<c.length;h=d.nextSetBit(h+1),k++)j[0][--g]=this.at[h],j[1][g]=c[k],b&&(j[0][0].add(this.at[h]),j[1][0].add(c[k]))}b&&(j[0][0].scale(1/(j[0].length-1)),j[1][0].scale(1/(j[1].length-1)));return j},"JU.Lst,~B");c(c$,"getAtomSetCenter",function(a){for(var b=new JU.P3,d=0,
c=a.nextSetBit(0);0<=c;c=a.nextSetBit(c+1))this.isJmolDataFrameForAtom(this.at[c])||(d++,b.add(this.at[c]));0<d&&b.scale(1/d);return b},"JU.BS");c(c$,"getAverageAtomPoint",function(){null==this.averageAtomPoint&&(this.averageAtomPoint=new JU.P3).setT(this.getAtomSetCenter(this.vwr.getAllAtoms()));return this.averageAtomPoint});c(c$,"setAPm",function(a,b,d,c,g,e,h){this.setAPa(a,b,d,c,g,e,h);switch(b){case 1095763991:case 1632634891:this.vwr.getBoolean(603979944)&&this.assignAromaticBondsBs(!0,null)}},
"JU.BS,~N,~N,~N,~S,~A,~A");c(c$,"addStateScript",function(a,b,d,c,g,e,h){var j=this.vwr.am.cmi;e?(this.thisStateModel!=j&&(a="frame "+(0>j?"all #"+j:this.getModelNumberDotted(j))+";\n  "+a),this.thisStateModel=j):this.thisStateModel=-1;a=new JM.StateScript(this.thisStateModel,a,b,d,c,g,h);a.isValid()&&this.stateScripts.addLast(a);return a},"~S,JU.BS,JU.BS,JU.BS,~S,~B,~B");c(c$,"calculateStructuresAllExcept",function(a,b,d,c,g,e){this.freezeModels();var h="";a=JU.BSUtil.copyInvert(a,this.mc);g&&this.setDefaultStructure(a);
for(var j=a.nextSetBit(0);0<=j;j=a.nextSetBit(j+1))h+=this.am[j].calculateStructures(b,d,c,g,e);g&&this.setStructureIndexes();return h},"JU.BS,~B,~B,~B,~B,~B");c(c$,"setDefaultStructure",function(a){for(var b=a.nextSetBit(0);0<=b;b=a.nextSetBit(b+1))this.am[b].isBioModel&&null==this.am[b].defaultStructure&&(this.am[b].defaultStructure=this.getProteinStructureState(this.am[b].bsAtoms,!1,!1,0))},"JU.BS");c(c$,"setProteinType",function(a,b){var d=-1,c=-1,g=this.getModelBS(a,!1);this.setDefaultStructure(g);
for(var e=a.nextSetBit(0);0<=e;e=a.nextSetBit(e+1)){c!=e-1&&(d=-1);var d=this.at[e].group.setProteinStructureType(b,d),h=this.at[e].mi;this.proteinStructureTainted=this.am[h].structureTainted=!0;c=e=this.at[e].group.lastAtomIndex}d=E(this.mc,0);for(e=0;e<this.ac;)h=this.at[e].mi,g.get(h)?(c=this.at[e].getStrucNo(),1E3>c&&c>d[h]&&(d[h]=c),e=this.at[e].group.lastAtomIndex+1):e=this.am[h].firstAtomIndex+this.am[h].ac;for(e=0;e<this.ac;)h=this.at[e].mi,g.get(h)?(1E3<this.at[e].getStrucNo()&&this.at[e].group.setStrucNo(++d[h]),
e=this.at[e].group.lastAtomIndex+1):e=this.am[h].firstAtomIndex+this.am[h].ac},"JU.BS,J.c.STR");c(c$,"freezeModels",function(){for(var a=this.mc;0<=--a;)this.am[a].freeze()});c(c$,"getStructureList",function(){return this.vwr.getStructureList()});c(c$,"setStructureList",function(a){for(var b=this.mc;0<=--b;)this.am[b].setStructureList(a)},"java.util.Map");c(c$,"setConformation",function(a){for(var b=this.getModelBS(a,!1),d=b.nextSetBit(0);0<=d;d=b.nextSetBit(d+1))this.am[d].setConformation(a);return a},
"JU.BS");c(c$,"getConformation",function(a,b,d){for(var c=new JU.BS,g=this.mc;0<=--g;)if(g==a||0>a){var e=this.getAltLocListInModel(g),h=this.getAltLocCountInModel(g);if(!(0<b&&b>=h)){var j=this.vwr.getModelUndeletedAtomsBitSet(g);if(0<=b&&!this.am[g].getPdbConformation(j,b))for(;0<=--h;)h!=b&&j.andNot(this.getAtomBitsMDa(1048607,e.substring(h,h+1)));0<=j.nextSetBit(0)&&(c.or(j),d&&this.am[g].setConformation(j))}}return c},"~N,~N,~B");c(c$,"getHeteroList",function(a){for(var b=new java.util.Hashtable,
d=!1,c=this.mc;0<=--c;)if(0>a||c==a){var g=this.getInfo(c,"hetNames");if(null!=g)for(var d=!0,e,g=g.entrySet().iterator();g.hasNext()&&((e=g.next())||1);){var h=e.getKey();b.put(h,e.getValue())}}return d?b:this.getInfoM("hetNames")},"~N");c(c$,"getInfoM",function(a){return null==this.msInfo?null:this.msInfo.get(a)},"~S");c(c$,"getMSInfoB",function(a){a=this.getInfoM(a);return q(a,Boolean)&&a.booleanValue()},"~S");c(c$,"mergeTrajectories",function(a){if(null==this.trajectorySteps){if(!a)return 0;this.trajectorySteps=
new JU.Lst}for(a=this.trajectorySteps.size();a<this.mc;a++)this.trajectorySteps.addLast(null);return this.mc},"~B");c(c$,"getTrajectoryIndex",function(a){return this.am[a].trajectoryBaseIndex},"~N");c(c$,"isTrajectory",function(a){return this.am[a].isTrajectory},"~N");c(c$,"isTrajectoryMeasurement",function(a){if(null!=a)for(var b=a[0],d,c=1;c<=b;c++)if(0<=(d=a[c])&&this.am[this.at[d].mi].isTrajectory)return!0;return!1},"~A");c(c$,"getModelBS",function(a,b){for(var d=new JU.BS,c=0,g=null==a,c=g?0:
a.nextSetBit(0);0<=c&&c<this.ac;c=g?c+1:a.nextSetBit(c+1)){d.set(c=this.at[c].mi);if(b)for(var e=this.am[c].trajectoryBaseIndex,h=0;h<this.mc;h++)this.am[h].trajectoryBaseIndex==e&&d.set(h);c=this.am[c].firstAtomIndex+this.am[c].ac-1}return d},"JU.BS,~B");c(c$,"getIterativeModels",function(a){for(var b=new JU.BS,d=0;d<this.mc;d++)(a||!this.isJmolDataFrameForModel(d))&&this.am[d].trajectoryBaseIndex==d&&b.set(d);return b},"~B");c(c$,"isTrajectorySubFrame",function(a){return this.am[a].isTrajectory&&
this.am[a].trajectoryBaseIndex!=a},"~N");c(c$,"selectDisplayedTrajectories",function(a){for(var b=0;b<this.mc;b++)this.am[b].isTrajectory&&this.at[this.am[b].firstAtomIndex].mi!=b&&a.clear(b);return a},"JU.BS");c(c$,"fillAtomData",function(a,b){if(0!=(b&4)){this.getMolecules();a.bsMolecules=Array(this.molecules.length);a.atomMolecule=E(this.ac,0);for(var d,c=0;c<this.molecules.length;c++){d=a.bsMolecules[c]=this.molecules[c].atomList;for(var g=d.nextSetBit(0);0<=g;g=d.nextSetBit(g+1))a.atomMolecule[g]=
c}}0!=(b&8)?(d=E(1,0),a.hAtomRadius=this.vwr.getVanderwaalsMar(1)/1E3,a.hAtoms=this.calculateHydrogens(a.bsSelected,d,!1,!0,null),a.hydrogenAtomCount=d[0]):(a.firstAtomIndex=0>a.modelIndex?null==a.bsSelected?0:Math.max(0,a.bsSelected.nextSetBit(0)):this.am[a.modelIndex].firstAtomIndex,a.lastModelIndex=a.firstModelIndex=0==this.ac?0:this.at[a.firstAtomIndex].mi,a.modelName=this.getModelNumberDotted(a.firstModelIndex),this.fillADa(a,b))},"J.atomdata.AtomData,~N");c(c$,"getModelNumberDotted",function(a){return 1>
this.mc||a>=this.mc||0>a?"":JU.Escape.escapeModelFileNumber(this.modelFileNumbers[a])},"~N");c(c$,"getModelNumber",function(a){return this.modelNumbers[2147483647==a?this.mc-1:a]},"~N");c(c$,"getModelProperty",function(a,b){var d=this.am[a].properties;return null==d?null:d.getProperty(b)},"~N,~S");c(c$,"getModelAuxiliaryInfo",function(a){return 0>a?null:this.am[a].auxiliaryInfo},"~N");c(c$,"setInfo",function(a,b,d){this.am[a].auxiliaryInfo.put(b,d)},"~N,~O,~O");c(c$,"getInfo",function(a,b){return 0>
a?null:this.am[a].auxiliaryInfo.get(b)},"~N,~S");c(c$,"getInfoB",function(a,b){var d=this.am[a].auxiliaryInfo;return null!=d&&d.containsKey(b)&&d.get(b).booleanValue()},"~N,~S");c(c$,"getInfoI",function(a,b){var d=this.am[a].auxiliaryInfo;return null!=d&&d.containsKey(b)?d.get(b).intValue():-2147483648},"~N,~S");c(c$,"getInsertionCountInModel",function(a){return this.am[a].nInsertions},"~N");c$.modelFileNumberFromFloat=c(c$,"modelFileNumberFromFloat",function(a){var b=x(Math.floor(a));for(a=x(Math.floor(1E4*
(a-b+1E-5)));0!=a&&0==a%10;)a/=10;return 1E6*b+a},"~N");c(c$,"getAltLocCountInModel",function(a){return this.am[a].nAltLocs},"~N");c(c$,"getChainCountInModelWater",function(a,b){if(0>a){for(var d=0,c=this.mc;0<=--c;)d+=this.am[c].getChainCount(b);return d}return this.am[a].getChainCount(b)},"~N,~B");c(c$,"getGroupCountInModel",function(a){if(0>a){a=0;for(var b=this.mc;0<=--b;)a+=this.am[b].getGroupCount();return a}return this.am[a].getGroupCount()},"~N");c(c$,"calcSelectedGroupsCount",function(){for(var a=
this.vwr.bsA(),b=this.mc;0<=--b;)this.am[b].calcSelectedGroupsCount(a)});c(c$,"calcSelectedMonomersCount",function(){for(var a=this.vwr.bsA(),b=this.mc;0<=--b;)this.am[b].calcSelectedMonomersCount(a)});c(c$,"isJmolDataFrameForModel",function(a){return 0<=a&&a<this.mc&&this.am[a].isJmolDataFrame},"~N");c(c$,"isJmolDataFrameForAtom",function(a){return this.am[a.mi].isJmolDataFrame},"JM.Atom");c(c$,"setJmolDataFrame",function(a,b,d){var c=this.am[null==a?this.am[d].dataSourceFrame:b];null==a&&(a=this.am[d].jmolFrameType);
0<=b&&(null==c.dataFrames&&(c.dataFrames=new java.util.Hashtable),this.am[d].dataSourceFrame=b,this.am[d].jmolFrameType=a,c.dataFrames.put(a,Integer.$valueOf(d)));a.startsWith("quaternion")&&0>a.indexOf("deriv")&&(a=a.substring(0,a.indexOf(" ")),c.dataFrames.put(a,Integer.$valueOf(d)))},"~S,~N,~N");c(c$,"getJmolDataFrameIndex",function(a,b){if(null==this.am[a].dataFrames)return-1;var d=this.am[a].dataFrames.get(b);return null==d?-1:d.intValue()},"~N,~S");c(c$,"clearDataFrameReference",function(a){for(var b=
0;b<this.mc;b++){var d=this.am[b].dataFrames;if(null!=d)for(d=d.values().iterator();d.hasNext();)d.next().intValue()==a&&d.remove()}},"~N");c(c$,"getJmolFrameType",function(a){return 0<=a&&a<this.mc?this.am[a].jmolFrameType:"modelSet"},"~N");c(c$,"getJmolDataSourceFrame",function(a){return 0<=a&&a<this.mc?this.am[a].dataSourceFrame:-1},"~N");c(c$,"saveModelOrientation",function(a,b){this.am[a].orientation=b},"~N,JM.Orientation");c(c$,"getModelOrientation",function(a){return this.am[a].orientation},
"~N");c(c$,"getPDBHeader",function(a){return this.am[a].isBioModel?this.am[a].getFullPDBHeader():this.getFileHeader(a)},"~N");c(c$,"getFileHeader",function(a){if(0>a)return"";if(this.am[a].isBioModel)return this.am[a].getFullPDBHeader();a=this.getInfo(a,"fileHeader");null==a&&(a=this.modelSetName);return null!=a?a:"no header information found"},"~N");c(c$,"getAltLocIndexInModel",function(a,b){if("\x00"==b)return 0;var d=this.getAltLocListInModel(a);return 0==d.length?0:d.indexOf(b)+1},"~N,~S");c(c$,
"getInsertionCodeIndexInModel",function(a,b){if("\x00"==b)return 0;var d=this.getInsertionListInModel(a);return 0==d.length?0:d.indexOf(b)+1},"~N,~S");c(c$,"getAltLocListInModel",function(a){a=this.getInfo(a,"altLocs");return null==a?"":a},"~N");c(c$,"getInsertionListInModel",function(a){a=this.getInfo(a,"insertionCodes");return null==a?"":a},"~N");c(c$,"getModelSymmetryCount",function(a){return 0<this.am[a].biosymmetryCount?this.am[a].biosymmetryCount:null==this.unitCells||null==this.unitCells[a]?
0:this.unitCells[a].getSpaceGroupOperationCount()},"~N");c(c$,"getModelCellRange",function(a){return null==this.unitCells?null:this.unitCells[a].getCellRange()},"~N");c(c$,"getLastVibrationVector",function(a,b){if(null!=this.vibrations)for(var d,c=0>=a?0:this.am[a].firstAtomIndex,g=0>a||a>=this.mc-1?this.ac:this.am[a+1].firstAtomIndex;--g>=c;)if((0>a||this.at[g].mi==a)&&((1276121113==b||0==b)&&null!=(d=this.getModulation(g))||(4166==b||0==b)&&null!=(d=this.getVibration(g,!1)))&&d.isNonzero())return g;
return-1},"~N,~N");c(c$,"getModulationList",function(a,b,d){var c=new JU.Lst;if(null!=this.vibrations)for(var g=a.nextSetBit(0);0<=g;g=a.nextSetBit(g+1))q(this.vibrations[g],J.api.JmolModulationSet)?c.addLast(this.vibrations[g].getModulation(b,d)):c.addLast(Float.$valueOf("O"==b?NaN:-1));return c},"JU.BS,~S,JU.P3");c(c$,"getElementsPresentBitSet",function(a){if(0<=a)return this.elementsPresent[a];a=new JU.BS;for(var b=0;b<this.mc;b++)a.or(this.elementsPresent[b]);return a},"~N");c(c$,"getMoleculeIndex",
function(a,b){0==this.moleculeCount&&this.getMolecules();for(var d=0;d<this.moleculeCount;d++)if(this.molecules[d].atomList.get(a))return b?this.molecules[d].indexInModel:d;return 0},"~N,~B");c(c$,"getMoleculeBitSet",function(a){0==this.moleculeCount&&this.getMolecules();var b=JU.BSUtil.copy(a);a=JU.BSUtil.copy(a);for(var d=0,c=new JU.BS;0<=(d=a.length()-1);)c=this.getMoleculeBitSetForAtom(d),null==c?(a.clear(d),b.clear(d)):(a.andNot(c),b.or(c));return b},"JU.BS");c(c$,"getMoleculeBitSetForAtom",
function(a){0==this.moleculeCount&&this.getMolecules();for(var b=0;b<this.moleculeCount;b++)if(this.molecules[b].atomList.get(a))return this.molecules[b].atomList;return null},"~N");c(c$,"getModelDipole",function(a){if(0>a)return null;var b=this.getInfo(a,"dipole");null==b&&(b=this.getInfo(a,"DIPOLE_VEC"));return b},"~N");c(c$,"calculateMolecularDipole",function(a,b){if(null!=b){var d=b.nextSetBit(0);if(0>d)return null;a=this.at[d].mi}if(null==this.partialCharges||0>a)return null;var c=d=0,g=0,e=
0,h=new JU.V3,j=new JU.V3;null==b&&(b=this.getModelAtomBitSetIncludingDeleted(-1,!1));for(var k=b.nextSetBit(0);0<=k;k=b.nextSetBit(k+1))if(!(this.at[k].mi!=a||this.at[k].isDeleted())){var n=this.partialCharges[k];0>n?(c++,e+=n,j.scaleAdd2(n,this.at[k],j)):0<n&&(d++,g+=n,h.scaleAdd2(n,this.at[k],h))}if(0.01<Math.abs(g+e))return JU.Logger.info("Dipole calculation requires balanced charges: "+g+" "+e),null;if(0==c||0==d)return null;h.add(j);h.scale(4.8);return h},"~N,JU.BS");c(c$,"getMoleculeCountInModel",
function(a){var b=0;0==this.moleculeCount&&this.getMolecules();if(0>a)return this.moleculeCount;for(var d=0;d<this.mc;d++)a==d&&(b+=this.am[d].moleculeCount);return b},"~N");c(c$,"calcSelectedMoleculesCount",function(){var a=this.vwr.bsA();0==this.moleculeCount&&this.getMolecules();this.selectedMolecules.xor(this.selectedMolecules);for(var b=new JU.BS,d=0;d<this.moleculeCount;d++)JU.BSUtil.copy2(a,b),b.and(this.molecules[d].atomList),0<b.length()&&this.selectedMolecules.set(d)});c(c$,"setCentroid",
function(a,b){var d=this.getNotInCentroid(a,b);null!=d&&0<=d.nextSetBit(0)&&this.vwr.deleteAtoms(d,!1)},"JU.BS,~A");c(c$,"getNotInCentroid",function(a,b){var d=a.nextSetBit(0);if(0>d)return null;d=this.getUnitCell(this.at[d].mi);return null==d?null:d.notInCentroid(this,a,b)},"JU.BS,~A");c(c$,"getMolecules",function(){if(0<this.moleculeCount)return this.molecules;null==this.molecules&&(this.molecules=Array(4));this.moleculeCount=0;for(var a=null,b=Array(this.mc),d=null,c=0;c<this.mc;c++)b[c]=this.vwr.getModelUndeletedAtomsBitSet(c),
a=this.am[c],a.moleculeCount=0,d=a.getBioBranches(d);this.molecules=JU.JmolMolecule.getMolecules(this.at,b,d,null);for(c=this.moleculeCount=this.molecules.length;0<=--c;)a=this.am[this.molecules[c].modelIndex],a.firstMoleculeIndex=c,a.moleculeCount++;return this.molecules});c(c$,"initializeBspf",function(){if(!(null!=this.bspf&&this.bspf.isValid)){this.showRebondTimes&&JU.Logger.startTimer("build bspf");var a=new J.bspt.Bspf(3);JU.Logger.debugging&&JU.Logger.debug("sequential bspt order");for(var b=
JU.BS.newN(this.mc),d=this.ac;0<=--d;){var c=this.at[d];!c.isDeleted()&&!this.isTrajectorySubFrame(c.mi)&&(a.addTuple(this.am[c.mi].trajectoryBaseIndex,c),b.set(c.mi))}this.showRebondTimes&&(JU.Logger.checkTimer("build bspf",!1),a.stats());for(d=b.nextSetBit(0);0<=d;d=b.nextSetBit(d+1))a.validateModel(d,!0);a.isValid=!0;this.bspf=a}});c(c$,"initializeBspt",function(a){this.initializeBspf();this.bspf.isInitializedIndex(a)||this.bspf.initialize(a,this.at,this.vwr.getModelUndeletedAtomsBitSet(a))},"~N");
c(c$,"setIteratorForPoint",function(a,b,d,c){0>b?a.setCenter(d,c):(this.initializeBspt(b),a.setModel(this,b,this.am[b].firstAtomIndex,2147483647,d,c,null))},"J.api.AtomIndexIterator,~N,JU.T3,~N");c(c$,"setIteratorForAtom",function(a,b,d,c,g){0>b&&(b=this.at[d].mi);b=this.am[b].trajectoryBaseIndex;this.initializeBspt(b);a.setModel(this,b,this.am[b].firstAtomIndex,d,this.at[d],c,g)},"J.api.AtomIndexIterator,~N,~N,~N,J.atomdata.RadiusData");c(c$,"getSelectedAtomIterator",function(a,b,d,c,g){this.initializeBspf();
if(g){g=this.getModelBS(a,!1);for(var e=g.nextSetBit(0);0<=e;e=g.nextSetBit(e+1))this.initializeBspt(e);g=new JM.AtomIteratorWithinModelSet(g)}else g=new JM.AtomIteratorWithinModel;g.initialize(this.bspf,a,b,d,c,this.vwr.isParallel());return g},"JU.BS,~B,~B,~B,~B");j(c$,"getBondCountInModel",function(a){return 0>a?this.bondCount:this.am[a].getBondCount()},"~N");c(c$,"getAtomCountInModel",function(a){return 0>a?this.ac:this.am[a].ac},"~N");c(c$,"getModelAtomBitSetIncludingDeletedBs",function(a){var b=
new JU.BS;null==a&&null==this.bsAll&&(this.bsAll=JU.BSUtil.setAll(this.ac));if(null==a)b.or(this.bsAll);else for(var d=a.nextSetBit(0);0<=d;d=a.nextSetBit(d+1))b.or(this.getModelAtomBitSetIncludingDeleted(d,!1));return b},"JU.BS");c(c$,"getModelAtomBitSetIncludingDeleted",function(a,b){var d=0>a?this.bsAll:this.am[a].bsAtoms;null==d&&(d=this.bsAll=JU.BSUtil.setAll(this.ac));return b?JU.BSUtil.copy(d):d},"~N,~B");c(c$,"getAtomBitsMaybeDeleted",function(a,b){var d,c;switch(a){default:return this.getAtomBitsMDa(a,
b);case 1073741925:return this.getAnnotationBits("domains",1073741925,b);case 1073742189:return this.getAnnotationBits("validation",1073742189,b);case 1073741916:return this.getAnnotationBits("dssr",1073741916,b);case 1073742128:return this.getAnnotationBits("rna3d",1073742128,b);case 1678770178:case 1048585:return this.getAtomBitsMDb(a,b);case 1073741864:return c=new JU.BS,!this.haveBioModels||0!=b.length%2?c:this.getAtomBitsMDa(1087373318,this.bioModel.getBasePairBits(this,b));case 1679429641:var g=
this.getBoxInfo(b,1);c=this.getAtomsWithin(g.getBoundBoxCornerVector().length()+1E-4,g.getBoundBoxCenter(),null,-1);for(d=c.nextSetBit(0);0<=d;d=c.nextSetBit(d+1))g.isWithin(this.at[d])||c.clear(d);return c;case 1095761925:c=new JU.BS;d=b;this.ptTemp1.set(d[0]/1E3,d[1]/1E3,d[2]/1E3);for(d=this.ac;0<=--d;)this.isInLatticeCell(d,this.ptTemp1,this.ptTemp2,!1)&&c.set(d);return c;case 1095761926:c=JU.BSUtil.newBitSet2(0,this.ac);d=b;g=[x(d[0]/1E3)-1,x(d[1]/1E3)-1,x(d[2]/1E3)-1,x(d[0]/1E3),x(d[1]/1E3),
x(d[2]/1E3),0];for(d=this.mc;0<=--d;){var e=this.getUnitCell(d);null==e?JU.BSUtil.andNot(c,this.am[d].bsAtoms):c.andNot(e.notInCentroid(this,this.am[d].bsAtoms,g))}return c;case 1095761936:return this.getMoleculeBitSet(b);case 1087373320:return this.getSequenceBits(b,null);case 1048615:return this.haveBioModels?this.bioModel.getSelectCodeRange(this,b):new JU.BS;case 3145772:c=JU.BS.newN(this.ac);g=-1;e=0;for(d=this.ac;0<=--d;){var h=this.at[d],j=h.atomSymmetry;if(null!=j){if(h.mi!=g){g=h.mi;if(null==
this.getModelCellRange(g))continue;e=this.getModelSymmetryCount(g)}for(var h=0,k=e;0<=--k;)if(j.get(k)&&1<++h){c.set(d);break}}}return c;case 1089470478:return JU.BSUtil.copy(null==this.bsSymmetry?this.bsSymmetry=JU.BS.newN(this.ac):this.bsSymmetry);case 1614417948:c=new JU.BS;if(null==this.vwr.getCurrentUnitCell())return c;this.ptTemp1.set(1,1,1);for(d=this.ac;0<=--d;)this.isInLatticeCell(d,this.ptTemp1,this.ptTemp2,!1)&&c.set(d);return c}},"~N,~O");c(c$,"getAnnotationBits",function(a,b,d){for(var c=
new JU.BS,g=this.vwr.getAnnotationParser(),e,h=this.mc;0<=--h;)null!=(e=this.getInfo(h,a))&&c.or(g.getAtomBits(this.vwr,d,this.getCachedAnnotationMap(h,a+" V ",e),this.am[h].dssrCache,b,h,this.am[h].bsAtoms));return c},"~S,~N,~S");c(c$,"getCachedAnnotationMap",function(a,b,d){a=null==this.am[a].dssrCache&&null!=d?this.am[a].dssrCache=new java.util.Hashtable:this.am[a].dssrCache;if(null==a)return null;var c=a.get(b);null==c&&null!=d&&(c=q(d,JS.SV)||q(d,java.util.Hashtable)?d:this.vwr.evaluateExpressionAsVariable(d),
a.put(b,c));return q(c,JS.SV)||q(c,java.util.Hashtable)?c:null},"~N,~S,~O");c(c$,"isInLatticeCell",function(a,b,d,c){var g=this.getUnitCell(this.at[a].mi);d.setT(this.at[a]);return null!=g&&g.checkUnitCell(g,b,d,c)},"~N,JU.P3,JU.P3,~B");c(c$,"getAtomsWithinRadius",function(a,b,d,c){var g=new JU.BS,e=this.getIterativeModels(!1);b=JU.BSUtil.andNot(b,this.vwr.slm.bsDeleted);var h=this.getSelectedAtomIterator(null,!1,!1,!1,!1);if(d){d=!this.vwr.g.legacyJavaFloat;for(var j=new JU.P3,k=b.nextSetBit(0);0<=
k;k=b.nextSetBit(k+1))for(var n=this.mc;0<=--n;)e.get(n)&&(0>a?this.getAtomsWithin(a,this.at[k].getFractionalUnitCoordPt(d,!0,j),g,-1):(this.setIteratorForAtom(h,n,k,a,c),h.addAtoms(g)))}else{g.or(b);for(k=b.nextSetBit(0);0<=k;k=b.nextSetBit(k+1))0>a?this.getAtomsWithin(a,this.at[k],g,this.at[k].mi):(this.setIteratorForAtom(h,-1,k,a,c),h.addAtoms(g))}h.release();return g},"~N,JU.BS,~B,J.atomdata.RadiusData");c(c$,"getAtomsWithin",function(a,b,d,c){null==d&&(d=new JU.BS);if(0>a){a=-a;for(var g=this.ac;0<=
--g;){var e=this.at[g];0<=c&&this.at[g].mi!=c||!d.get(g)&&e.getFractionalUnitDistance(b,this.ptTemp1,this.ptTemp2)<=a&&d.set(e.i)}return d}c=this.getIterativeModels(!0);g=this.getSelectedAtomIterator(null,!1,!1,!1,!1);for(e=this.mc;0<=--e;)c.get(e)&&(this.setIteratorForAtom(g,-1,this.am[e].firstAtomIndex,-1,null),g.setCenter(b,a),g.addAtoms(d));g.release();return d},"~N,JU.P3,JU.BS,~N");c(c$,"deleteBonds",function(a,b){if(!b)for(var d=new JU.BS,c=new JU.BS,g=a.nextSetBit(0);0<=g;g=a.nextSetBit(g+
1)){var e=this.bo[g].atom1;this.am[e.mi].isModelKit||(d.clearAll(),c.clearAll(),d.set(e.i),c.set(this.bo[g].getAtomIndex2()),this.addStateScript("connect ",null,d,c,"delete",!1,!0))}this.dBb(a,b)},"JU.BS,~B");c(c$,"makeConnections2",function(a,b,d,c,g,e,h,j,k,n){null==h&&(h=new JU.BS);var m=65535==d,r=131071==d;r&&(d=1);var p=JM.Bond.isOrderH(d),w=!1,q=!1,s=!1,t=!1;switch(c){case 12291:return this.deleteConnections(a,b,d,g,e,j,r);case 603979873:case 1073741852:if(515!=d)return this.autoBond(g,e,h,
j,p,603979873==c);q=t=!0;break;case 1087373321:w=q=!0;break;case 1073742025:q=!0;break;case 1073741904:s=!0}c=!w||m;m=!w&&!m;this.defaultCovalentMad=this.vwr.getMadBond();var r=0>a,u=0>b,v=r||u,x=!j||0.1!=a||1E8!=b;x&&(a=this.fixD(a,r),b=this.fixD(b,u));var z=this.getDefaultMadFromOrder(d),A=0,C=0,D=null,E=null,H=null,I="\x00",K=d|131072;try{for(var L=g.nextSetBit(0);0<=L;L=g.nextSetBit(L+1)){if(j)D=this.bo[L],E=D.atom1,H=D.atom2;else{E=this.at[L];if(E.isDeleted())continue;I=this.isModulated(L)?"\x00":
E.altloc}for(var M=j?0:e.nextSetBit(0);0<=M;M=e.nextSetBit(M+1)){if(j)M=2147483646;else{if(M==L)continue;H=this.at[M];if(E.mi!=H.mi||H.isDeleted())continue;if("\x00"!=I&&I!=H.altloc&&"\x00"!=H.altloc)continue;D=E.getBond(H)}if(!((null==D?q:s)||x&&!this.isInRange(E,H,a,b,r,u,v)))if(null==D)h.set(this.bondAtoms(E,H,d,z,h,n,k,!0).index),A++;else if(m&&(D.setOrder(d),this.bsAromatic.clear(D.index)),c||d==D.order||K==D.order||p&&D.isHydrogen())h.set(D.index),C++}}}catch(N){if(!B(N,Exception))throw N;}t&&
this.assignAromaticBondsBs(!0,h);w||this.sm.setShapeSizeBs(1,-2147483648,null,h);return[A,C]},"~N,~N,~N,~N,JU.BS,JU.BS,JU.BS,~B,~B,~N");c(c$,"autoBondBs4",function(a,b,d,c,g,e){if(e)return this.autoBond_Pre_11_9_24(a,b,d,c,g);if(0==this.ac)return 0;0==g&&(g=1);1.4E-45==this.maxBondingRadius&&this.findMaxRadii();e=this.vwr.getFloat(570425348);var h=this.vwr.getFloat(570425364),h=h*h,j=0;this.showRebondTimes&&JU.Logger.startTimer("autobond");var k=-1,n=null==a,m,r;n?(r=0,m=null):(a.equals(b)?m=a:(m=
JU.BSUtil.copy(a),m.or(b)),r=m.nextSetBit(0));for(var p=this.getSelectedAtomIterator(null,!1,!1,!0,!1),w=!1;0<=r&&r<this.ac;r=n?r+1:m.nextSetBit(r+1)){var q=n||a.get(r),s=n||b.get(r),t=this.at[r];if(!t.isDeleted()){var u=t.mi;if(u!=k){k=u;if(this.isJmolDataFrameForModel(u)){r=this.am[u].firstAtomIndex+this.am[u].ac-1;continue}w=this.getInfoB(u,"autoBondUsingOccupation")}u=t.getBondingRadius();if(0!=u){var v=null!=d&&d.get(r);for(this.setIteratorForAtom(p,-1,r,u+this.maxBondingRadius+e,null);p.hasNext();){var x=
this.at[p.next()];if(!x.isDeleted()){var z=x.i,A=n||a.get(z),B=n||b.get(z);!A&&!B||(!(q&&B||s&&A)||v&&d.get(z)||w&&null!=this.occupancies&&50>this.occupancies[r]!=50>this.occupancies[z])||(z=JM.BondCollection.getBondOrderFull(u,x.getBondingRadius(),p.foundDistance2(),h,e),0<z&&this.autoBondCheck(t,x,z,g,c)&&j++)}}p.release()}}}this.showRebondTimes&&JU.Logger.checkTimer("autoBond",!1);return j},"JU.BS,JU.BS,JU.BS,JU.BS,~N,~B");c(c$,"autoBondCheck",function(a,b,d,c,g){if(20<a.getCurrentBondCount()||
20<b.getCurrentBondCount())return this.maxBondWarned||JU.Logger.warn("maximum auto bond count reached"),this.maxBondWarned=!0,!1;var e=a.getFormalCharge();if(0!=e){var h=b.getFormalCharge();if(0>e&&0>h||0<e&&0<h)return!1}if(a.altloc!=b.altloc&&"\x00"!=a.altloc&&"\x00"!=b.altloc&&null==this.getModulation(a.i))return!1;this.getOrAddBond(a,b,d,c,g,0,!1);return!0},"JM.Atom,JM.Atom,~N,~N,JU.BS");c(c$,"autoBond_Pre_11_9_24",function(a,b,d,c,g){if(0==this.ac)return 0;0==g&&(g=1);1.4E-45==this.maxBondingRadius&&
this.findMaxRadii();var e=this.vwr.getFloat(570425348),h=this.vwr.getFloat(570425364),h=h*h,j=0;this.initializeBspf();for(var k=-1,n=this.ac;0<=--n;){var m=null==a||a.get(n),r=null==b||b.get(n);if(m||r){var p=this.at[n];if(!p.isDeleted()){var w=p.mi;if(w!=k&&(k=w,this.isJmolDataFrameForModel(w))){for(;0<=--n&&this.at[n].mi==w;);n++;continue}var q=p.getBondingRadius();if(0!=q){var s=q+this.maxBondingRadius+e;this.initializeBspt(w);w=this.bspf.getCubeIterator(w);for(w.initialize(p,s,!0);w.hasMoreElements();)if(s=
w.nextElement(),!(s===p||s.isDeleted())){var t=s.i,u=null==a||a.get(t),v=null==b||b.get(t);if(!(!u&&!v||null!=d&&d.get(t)&&d.get(n)))if(m&&v||r&&u)t=JM.BondCollection.getBondOrderFull(q,s.getBondingRadius(),w.foundDistance2(),h,e),0<t&&this.autoBondCheck(p,s,t,g,c)&&j++}w.release()}}}}return j},"JU.BS,JU.BS,JU.BS,JU.BS,~N");c(c$,"autoBond",function(a,b,d,c,g,e){if(c){c=a;a=new JU.BS;b=new JU.BS;for(var h=c.nextSetBit(0);0<=h;h=c.nextSetBit(h+1))a.set(this.bo[h].atom1.i),b.set(this.bo[h].atom2.i)}return[g?
this.autoHbond(a,b,!1):this.autoBondBs4(a,b,null,d,this.vwr.getMadBond(),e),0]},"JU.BS,JU.BS,JU.BS,~B,~B,~B");c(c$,"autoHbond",function(a,b,d){if(d){for(var c=this.getModelBS(a,!1),g=c.nextSetBit(0);0<=g&&d;g=c.nextSetBit(g+1))d=!this.am[g].hasRasmolHBonds;if(d)return 0}d=!1;for(g=a.nextSetBit(0);0<=g;g=a.nextSetBit(g+1))if(1==this.at[g].getElementNumber()){d=!0;break}c=new JU.BS;g=this.vwr.getBoolean(603979853);if(null==b||g&&!d)return JU.Logger.info((null==b?"DSSP/DSSR ":"RasMol")+" pseudo-hbond calculation"),
this.calcRasmolHydrogenBonds(a,b,null,!1,2147483647,!1,c),-JU.BSUtil.cardinalityOf(c);JU.Logger.info(d?"Standard Hbond calculation":"Jmol pseudo-hbond calculation");var e=null;if(!d){e=new JU.BS;for(g=a.nextSetBit(0);0<=g;g=a.nextSetBit(g+1))switch(this.at[g].atomID){case 64:case 4:case 14:case 15:case 16:case 17:e.set(g)}}var h=this.vwr.getFloat(570425361),j=3.141592653589793*this.vwr.getFloat(570425360)/180,k=h*h,n=JM.ModelSet.hbondMin*JM.ModelSet.hbondMin,m=h>JM.ModelSet.hbondMin?n:k,r=h>JM.ModelSet.hbondMin?
JM.ModelSet.hbondMin:h,p=0,w=0,q=new JU.V3,s=new JU.V3;this.showRebondTimes&&JU.Logger.debugging&&JU.Logger.startTimer("hbond");var t=null,u=null;b=this.getSelectedAtomIterator(b,!1,!1,!1,!1);for(g=a.nextSetBit(0);0<=g;g=a.nextSetBit(g+1)){var v=this.at[g],x=v.getElementNumber(),z=1==x;if(!(!z&&(d||7!=x&&8!=x)||z&&!d)){var A,B,D;if(z){x=v.bonds;if(null==x)continue;D=!1;for(A=0;A<x.length&&!D;A++)D=x[A].getOtherAtom(v).getElementNumber(),D=7==D||8==D;if(!D)continue;B=r;x=1;A=m;D=!1}else B=h,x=n,A=
k,D=e.get(g);for(this.setIteratorForAtom(b,-1,v.i,B,null);b.hasNext();){B=this.at[b.next()];var C=B.getElementNumber();if(!(B===v||!z&&7!=C&&8!=C||z&&1==C||(w=b.foundDistance2())<x||w>A||D&&e.get(B.i)||v.isBonded(B))){if(0<j){q.sub2(v,B);if(null==(u=JM.ModelSet.checkMinAttachedAngle(v,j,q,s,d)))continue;q.scale(-1);if(null==(t=JM.ModelSet.checkMinAttachedAngle(B,j,q,s,d)))continue}var C=0,E;z&&!Float.isNaN(t.x)&&!Float.isNaN(u.x)?(E=4096,C=JM.HBond.getEnergy(Math.sqrt(w),t.distance(v),t.distance(u),
B.distance(u))/1E3):E=2048;c.set(this.addHBond(v,B,E,C));p++}}}}b.release();this.sm.setShapeSizeBs(1,-2147483648,null,c);this.showRebondTimes&&JU.Logger.checkTimer("hbond",!1);return d?p:-p},"JU.BS,JU.BS,~B");c$.checkMinAttachedAngle=c(c$,"checkMinAttachedAngle",function(a,b,d,c,g){var e=a.bonds;if(null==e||0==e.length)return JU.P3.new3(NaN,0,0);for(var h=null,j=3.4028235E38,k=e.length;0<=--k;)if(e[k].isCovalent()){var n=e[k].getOtherAtom(a);if(g||1!=n.getElementNumber()){c.sub2(a,n);var m=c.angle(d);
if(m<b)return null;m<j&&(h=n,j=m)}}return h},"JM.Atom,~N,JU.V3,JU.V3,~B");c(c$,"setStructureIndexes",function(){for(var a,b=0,d=-1,c=-1,g=-1,e=0;e<this.ac;e++){if((c=this.at[e].mi)!=g)b=0,g=c,d=-1;if((a=this.at[e].getStrucNo())!=d&&0!=a)this.at[e].group.setStrucNo(++b),d=b}});c(c$,"getModelInfoAsString",function(){var a=(new JU.SB).append('<models count="');a.appendI(this.mc).append('" modelSetHasVibrationVectors="').append(this.modelSetHasVibrationVectors()+'">\n<properties>');if(null!=this.modelSetProperties){for(var b=
this.modelSetProperties.propertyNames();b.hasMoreElements();){var d=b.nextElement();a.append('\n <property name="').append(d).append('" value=').append(JU.PT.esc(this.modelSetProperties.getProperty(d))).append(" />")}a.append("\n</properties>")}for(b=0;b<this.mc;++b)a.append('\n<model index="').appendI(b).append('" n="').append(this.getModelNumberDotted(b)).append('" id=').append(JU.PT.esc(""+this.getInfo(b,"modelID"))),d=this.vwr.getJDXBaseModelIndex(b),d!=b&&a.append(" baseModelId=").append(JU.PT.esc(this.getInfo(d,
"jdxModelID"))),a.append(" name=").append(JU.PT.esc(this.getModelName(b))).append(" title=").append(JU.PT.esc(this.getModelTitle(b))).append(' hasVibrationVectors="').appendB(this.vwr.modelHasVibrationVectors(b)).append('" />');a.append("\n</models>");return a.toString()});c(c$,"getSymmetryInfoAsString",function(){for(var a=(new JU.SB).append("Symmetry Information:"),b=0;b<this.mc;++b){a.append("\nmodel #").append(this.getModelNumberDotted(b)).append("; name=").append(this.getModelName(b)).append("\n");
var d=this.getUnitCell(b);a.append(null==d?"no symmetry information":d.getSymmetryInfoStr())}return a.toString()});c(c$,"getAtomsConnected",function(a,b,d,c){for(var g=q(c,JM.BondSet),e=g?new JM.BondSet:new JU.BS,h=E(this.ac,0),j,k=30720==d,n=65535==d,m=0;m<this.bondCount;m++){var r=this.bo[m];if(n||r.is(d)||k&&r.isHydrogen())g?e.set(m):(c.get(r.atom1.i)&&(h[j=r.atom2.i]++,e.set(j)),c.get(r.atom2.i)&&(h[j=r.atom1.i]++,e.set(j)))}if(g)return e;d=0==a;for(j=this.ac;0<=--j;)c=h[j],c<a||c>b?e.clear(j):
d&&0==c&&e.set(j);return e},"~N,~N,~N,JU.BS");c(c$,"getSymTemp",function(a){return null==this.symTemp||a?this.symTemp=J.api.Interface.getSymmetry(this.vwr,"ms"):this.symTemp},"~B");c(c$,"createModels",function(a){a=this.mc+a;var b=JU.AU.arrayCopyObject(this.am,a);this.validateBspf(!1);this.modelNumbers=JU.AU.arrayCopyI(this.modelNumbers,a);this.modelFileNumbers=JU.AU.arrayCopyI(this.modelFileNumbers,a);this.modelNumbersForAtomLabel=JU.AU.arrayCopyS(this.modelNumbersForAtomLabel,a);this.modelNames=
JU.AU.arrayCopyS(this.modelNames,a);this.frameTitles=JU.AU.arrayCopyS(this.frameTitles,a);for(var d=x(this.modelFileNumbers[this.mc-1]/1E6)+1,c=this.mc,g=0;c<a;c++)this.modelNumbers[c]=c+this.mc,this.modelFileNumbers[c]=1E6*d+ ++g,this.modelNumbersForAtomLabel[c]=this.modelNames[c]=d+"."+g;this.thisStateModel=-1;d=this.getInfoM("group3Lists");null!=d&&(c=this.getInfoM("group3Counts"),d=JU.AU.arrayCopyS(d,a),c=JU.AU.arrayCopyII(c,a),this.msInfo.put("group3Lists",d),this.msInfo.put("group3Counts",c));
this.unitCells=JU.AU.arrayCopyObject(this.unitCells,a);for(c=this.mc;c<a;c++)b[c]=(new JM.Model).set(this,c,-1,null,null,null),b[c].loadState=" model create #"+c+";";this.am=b;this.mc=a},"~N");c(c$,"deleteModel",function(a,b,d,c,g){if(0>a)this.validateBspf(!1),this.bsAll=null,this.resetMolecules(),this.isBbcageDefault=!1,this.calcBoundBoxDimensions(null,1);else{this.modelNumbers=JU.AU.deleteElements(this.modelNumbers,a,1);this.modelFileNumbers=JU.AU.deleteElements(this.modelFileNumbers,a,1);this.modelNumbersForAtomLabel=
JU.AU.deleteElements(this.modelNumbersForAtomLabel,a,1);this.modelNames=JU.AU.deleteElements(this.modelNames,a,1);this.frameTitles=JU.AU.deleteElements(this.frameTitles,a,1);this.thisStateModel=-1;var e=this.getInfoM("group3Lists"),h=this.getInfoM("group3Counts"),j=a+1;if(null!=e&&null!=e[j])for(var k=x(e[j].length/6);0<=--k;)0<h[j][k]&&(h[0][k]-=h[j][k],0==h[0][k]&&(e[0]=e[0].substring(0,6*k)+",["+e[0].substring(6*k+2)));null!=e&&(this.msInfo.put("group3Lists",JU.AU.deleteElements(e,a,1)),this.msInfo.put("group3Counts",
JU.AU.deleteElements(h,a,1)));null!=this.unitCells&&(this.unitCells=JU.AU.deleteElements(this.unitCells,a,1));for(k=this.stateScripts.size();0<=--k;)this.stateScripts.get(k).deleteAtoms(a,g,c)||this.stateScripts.remove(k);this.deleteModelAtoms(b,d,c);this.vwr.deleteModelAtoms(a,b,d,c)}},"~N,~N,~N,JU.BS,JU.BS");c(c$,"assignAtom",function(a,b,d){null==b&&(b="C");var c=this.at[a],g=new JU.BS,e=1==c.getElementNumber(),g=JU.Elements.elementNumberFromSymbol(b,!0),h=!1;if(0<g)this.setElement(c,g),this.vwr.shm.setShapeSizeBs(0,
0,this.vwr.rd,JU.BSUtil.newAndSetBit(a)),this.setAtomName(a,b+c.getAtomNumber()),this.am[c.mi].isModelKit||this.taintAtom(a,0);else if(b.equals("Pl"))c.setFormalCharge(c.getFormalCharge()+1);else if(b.equals("Mi"))c.setFormalCharge(c.getFormalCharge()-1);else if(b.equals("X"))h=!0;else if(!b.equals("."))return;this.removeUnnecessaryBonds(c,h);b=0;1==c.getCovalentBondCount()&&(e?b=1.5:!e&&1==g&&(b=1));0!=b&&(e=JU.V3.newVsub(c,this.at[c.getBondedAtomIndex(0)]),h=e.length(),e.normalize(),e.scale(b-h),
this.setAtomCoordRelative(a,e.x,e.y,e.z));a=JU.BSUtil.newAndSetBit(a);1!=g&&d&&(this.validateBspf(!1),g=this.getAtomsWithinRadius(1,a,!1,null),g.andNot(a),0<=g.nextSetBit(0)&&this.vwr.deleteAtoms(g,!1),g=this.vwr.getModelUndeletedAtomsBitSet(c.mi),g.andNot(this.getAtomBitsMDa(1613758476,null)),this.makeConnections2(0.1,1.8,1,1073741904,a,g,null,!1,!1,0));this.vwr.addHydrogens(a,!1,!0)},"~N,~S,~B");c(c$,"deleteAtoms",function(a){this.averageAtomPoint=null;if(null!=a){for(var b=new JU.BS,d=a.nextSetBit(0);0<=
d&&d<this.ac;d=a.nextSetBit(d+1))this.at[d].deleteBonds(b);for(d=0;d<this.mc;d++)this.am[d].bsAtomsDeleted.or(a),this.am[d].bsAtomsDeleted.and(this.am[d].bsAtoms),this.am[d].dssrCache=null;this.deleteBonds(b,!1)}},"JU.BS");c(c$,"adjustAtomArrays",function(a,b,d){this.ac=d;for(var c=b;c<d;c++){this.at[c]=this.at[a[c]];this.at[c].i=c;var g=this.am[this.at[c].mi];g.firstAtomIndex==a[c]&&(g.firstAtomIndex=c);g.bsAtoms.set(c)}if(null!=this.vibrations)for(c=b;c<d;c++)this.vibrations[c]=this.vibrations[a[c]];
if(null!=this.occupancies)for(c=b;c<d;c++)this.occupancies[c]=this.occupancies[a[c]];if(null!=this.bfactor100s)for(c=b;c<d;c++)this.bfactor100s[c]=this.bfactor100s[a[c]];if(null!=this.partialCharges)for(c=b;c<d;c++)this.partialCharges[c]=this.partialCharges[a[c]];if(null!=this.atomTensorList)for(c=b;c<d;c++)if(g=this.atomTensorList[c]=this.atomTensorList[a[c]],null!=g)for(var e=g.length;0<=--e;){var h=g[e];null!=h&&(h.atomIndex1=c)}if(null!=this.atomNames)for(c=b;c<d;c++)this.atomNames[c]=this.atomNames[a[c]];
if(null!=this.atomTypes)for(c=b;c<d;c++)this.atomTypes[c]=this.atomTypes[a[c]];if(null!=this.atomSerials)for(c=b;c<d;c++)this.atomSerials[c]=this.atomSerials[a[c]];if(null!=this.atomSeqIDs)for(c=b;c<d;c++)this.atomSeqIDs[c]=this.atomSeqIDs[a[c]]},"~A,~N,~N");c(c$,"growAtomArrays",function(a){this.at=JU.AU.arrayCopyObject(this.at,a);null!=this.vibrations&&(this.vibrations=JU.AU.arrayCopyObject(this.vibrations,a));null!=this.occupancies&&(this.occupancies=JU.AU.arrayCopyF(this.occupancies,a));null!=
this.bfactor100s&&(this.bfactor100s=JU.AU.arrayCopyShort(this.bfactor100s,a));null!=this.partialCharges&&(this.partialCharges=JU.AU.arrayCopyF(this.partialCharges,a));null!=this.atomTensorList&&(this.atomTensorList=JU.AU.arrayCopyObject(this.atomTensorList,a));null!=this.atomNames&&(this.atomNames=JU.AU.arrayCopyS(this.atomNames,a));null!=this.atomTypes&&(this.atomTypes=JU.AU.arrayCopyS(this.atomTypes,a));null!=this.atomSerials&&(this.atomSerials=JU.AU.arrayCopyI(this.atomSerials,a));null!=this.atomSeqIDs&&
(this.atomSeqIDs=JU.AU.arrayCopyI(this.atomSeqIDs,a))},"~N");c(c$,"addAtom",function(a,b,d,c,g,e,h,j,k,n,m,r,p,w,q,s,t,u,v){j=(new JM.Atom).setAtom(a,this.ac,k,n,v,j,d,r,t);this.am[a].ac++;this.am[a].bsAtoms.set(this.ac);JU.Elements.isElement(d,1)&&this.am[a].hydrogenCount++;this.ac>=this.at.length&&this.growAtomArrays(this.ac+100);this.at[this.ac]=j;this.setBFactor(this.ac,q);this.setOccupancy(this.ac,w);this.setPartialCharge(this.ac,p);null!=s&&this.setAtomTensors(this.ac,s);j.group=b;j.colixAtom=
this.vwr.cm.getColixAtomPalette(j,J.c.PAL.CPK.id);null!=c&&(null!=g&&(null==this.atomTypes&&(this.atomTypes=Array(this.at.length)),this.atomTypes[this.ac]=g),j.atomID=u,0==u&&(null==this.atomNames&&(this.atomNames=Array(this.at.length)),this.atomNames[this.ac]=c.intern()));-2147483648!=e&&(null==this.atomSerials&&(this.atomSerials=E(this.at.length,0)),this.atomSerials[this.ac]=e);0!=h&&(null==this.atomSeqIDs&&(this.atomSeqIDs=E(this.at.length,0)),this.atomSeqIDs[this.ac]=h);null!=m&&this.setVibrationVector(this.ac,
m);this.ac++;return j},"~N,JM.Group,~N,~S,~S,~N,~N,~N,JU.P3,~N,JU.V3,~N,~N,~N,~N,JU.Lst,~B,~N,JU.BS");c(c$,"getInlineData",function(a){var b=null;if(0<=a)b=this.am[a].loadScript;else for(a=this.mc;0<=--a&&!(0<(b=this.am[a].loadScript).length()););a=b.lastIndexOf('data "');if(0>a)return null;a=b.indexOf2('"',a+7);var d=b.lastIndexOf('end "');return d<a||0>a?null:b.substring2(a+2,d)},"~N");c(c$,"isAtomPDB",function(a){return 0<=a&&this.am[this.at[a].mi].isBioModel},"~N");c(c$,"isAtomAssignable",function(a){return 0<=
a&&this.at[a].mi==this.mc-1},"~N");c(c$,"haveModelKit",function(){for(var a=0;a<this.mc;a++)if(this.am[a].isModelKit)return!0;return!1});c(c$,"getModelKitStateBitset",function(a,b){for(var d=JU.BSUtil.copy(b),c=0;c<this.mc;c++)this.am[c].isModelKit||d.andNot(this.am[c].bsAtoms);return JU.BSUtil.deleteBits(a,d)},"JU.BS,JU.BS");c(c$,"setAtomNamesAndNumbers",function(a,b,d){0>b&&(a=this.am[this.at[a].mi].firstAtomIndex);null==this.atomSerials&&(this.atomSerials=E(this.ac,0));null==this.atomNames&&(this.atomNames=
Array(this.ac));for(var c=this.isXYZ&&this.vwr.getBoolean(603979978),g=2147483647,e=1;a<this.ac;++a){var h=this.at[a];h.mi!=g&&(g=h.mi,e=c?0:1);if(a>=-b){if(0==this.atomSerials[a]||0>b)this.atomSerials[a]=a<b?d.atomSerials[a]:e;if(null==this.atomNames[a]||0>b)this.atomNames[a]=(h.getElementSymbol()+this.atomSerials[a]).intern()}(!this.am[g].isModelKit||0<h.getElementNumber()&&!h.isDeleted())&&e++}},"~N,~N,JM.AtomCollection");c(c$,"setUnitCellOffset",function(a,b,d){null!=a&&(null==b?a.setOffset(d):
a.setOffsetPt(b))},"J.api.SymmetryInterface,JU.T3,~N");c(c$,"connect",function(a){this.resetMolecules();for(var b=new JU.BS,d=0;d<a.length;d++){var c=a[d];if(!(null==c||2>c.length)){var g=z(c[0]),e=0>g;e&&(g=-1-g);var h=z(c[1]);if(!(0>h||g>=this.ac||h>=this.ac)){var j=2<c.length?z(c[2]):1;0>j&&(j&=65535);var k=3<c.length?$(1E3*a[d][3]):this.getDefaultMadFromOrder(j);0==j||0==k&&32768!=j&&!JM.Bond.isOrderH(j)?(c=this.at[g].getBond(this.at[h]),null!=c&&b.set(c.index)):this.bondAtoms(this.at[g],this.at[h],
j,k,null,4<c.length?c[4]:0,e,!0)}}}0<=b.nextSetBit(0)&&this.deleteBonds(b,!1)},"~A");c(c$,"allowSpecAtom",function(){return 1!=this.mc||this.am[0].isBioModel});c(c$,"setFrameDelayMs",function(a,b){for(var d=b.nextSetBit(0);0<=d;d=b.nextSetBit(d+1))this.am[this.am[d].trajectoryBaseIndex].frameDelay=a},"~N,JU.BS");c(c$,"getFrameDelayMs",function(a){return a<this.am.length&&0<=a?this.am[this.am[a].trajectoryBaseIndex].frameDelay:0},"~N");c(c$,"getModelIndexFromId",function(a){var b=0<=a.indexOf("#"),
d=a.toLowerCase().endsWith(".basemodel");d&&(a=a.substring(0,a.length-10));for(var c=-1,g=null,e=0;e<this.mc;e++){var h=this.getInfo(e,"modelID"),j=a.startsWith("~")?"~"+this.getModelNumberDotted(e):null;if(!(null==j&&null==h&&null==(h=this.getModelTitle(e)))){b&&(g=this.getModelFileName(e),g.endsWith("#molfile")?h=g:(g+="#",h=g+h));if(a.equalsIgnoreCase(h)||a.equalsIgnoreCase(j))return d?this.vwr.getJDXBaseModelIndex(e):e;null!=g&&a.startsWith(g)&&(c=-2)}}return null==g&&!b?-2:c},"~S");c(c$,"getAuxiliaryInfo",
function(a){var b=this.msInfo;if(null==b)return null;for(var d=new JU.Lst,c=0;c<this.mc;++c)(null==a||a.get(c))&&d.addLast(this.getModelAuxiliaryInfo(c));b.put("models",d);return b},"JU.BS");c(c$,"getDihedralMap",function(a){for(var b=new JU.Lst,d=a.length,c=null,g=null,e=null,h=null,j=d-1;0<=--j;)for(var k=d;--k>j;)if(c=this.at[a[j]],g=this.at[a[k]],c.isBonded(g))for(var n=d;0<=--n;)if(n!=j&&n!=k&&(e=this.at[a[n]]).isBonded(c))for(var m=d;0<=--m;)if(m!=j&&m!=k&&m!=n&&(h=this.at[a[m]]).isBonded(g)){var r=
E(4,0);r[0]=e.i;r[1]=c.i;r[2]=g.i;r[3]=h.i;b.addLast(r)}d=b.size();a=JU.AU.newInt2(d);for(j=d;0<=--j;)a[d-j-1]=b.get(j);return a},"~A");c(c$,"setModulation",function(a,b,d,c){if(null==this.bsModulated)if(b)this.bsModulated=new JU.BS;else if(null==a)return;null==a&&(a=this.getModelAtomBitSetIncludingDeleted(-1,!1));for(var g=this.vwr.getFloat(1276121113),e=!1,h=a.nextSetBit(0);0<=h;h=a.nextSetBit(h+1)){var j=this.getModulation(h);null!=j&&(j.setModTQ(this.at[h],b,d,c,g),null!=this.bsModulated&&this.bsModulated.setBitTo(h,
b),e=!0)}e||(this.bsModulated=null)},"JU.BS,~B,JU.P3,~B");c(c$,"getBoundBoxOrientation",function(a,b){var d=b.nextSetBit(0);if(0>d)return"{0 0 0 1}";var c=null==this.vOrientations?0:this.vOrientations.length;if(0==c){for(var g=Array(3375),c=0,e=new JU.P4,h=-7;7>=h;h++)for(var j=-7;7>=j;j++)for(var k=0;14>=k;k++,c++)1<(g[c]=JU.V3.new3(h/7,j/7,k/14)).length()&&--c;this.vOrientations=Array(c);for(h=c;0<=--h;)k=Math.sqrt(1-g[h].lengthSquared()),Float.isNaN(k)&&(k=0),e.set4(g[h].x,g[h].y,g[h].z,k),this.vOrientations[h]=
JU.Quat.newP4(e)}for(var g=new JU.P3,e=3.4028235E38,n=null,m=null,h=0;h<c;h++){var k=this.vOrientations[h],r=new JU.BoxInfo;r.setMargin(0);for(j=d;0<=j;j=b.nextSetBit(j+1))r.addBoundBoxPoint(k.transform2(this.at[j],g));switch(a){default:case 1313866249:case 1073741863:j=(r.bbCorner1.x-r.bbCorner0.x)*(r.bbCorner1.y-r.bbCorner0.y)*(r.bbCorner1.z-r.bbCorner0.z);break;case 1112541205:j=r.bbCorner1.x-r.bbCorner0.x;break;case 1112541206:j=r.bbCorner1.y-r.bbCorner0.y;break;case 1112541207:j=r.bbCorner1.z-
r.bbCorner0.z}j<e&&(n=k,m=r,e=j)}if(1313866249!=a&&1073741863!=a)return n.toString();k=JU.Quat.newQ(n);d=m.bbCorner1.x-m.bbCorner0.x;c=m.bbCorner1.y-m.bbCorner0.y;h=m.bbCorner1.z-m.bbCorner0.z;d<c&&(g.set(0,0,1),k=JU.Quat.newVA(g,90).mulQ(k),j=d,d=c,c=j);c<h&&(h>d&&(g.set(0,1,0),k=JU.Quat.newVA(g,90).mulQ(k),j=d,d=h,h=j),g.set(1,0,0),k=JU.Quat.newVA(g,90).mulQ(k),j=c,c=h,h=j);return 1313866249==a?e+"\t{"+d+" "+c+" "+h+"}":0==k.getTheta()?"{0 0 0 1}":k.toString()},"~N,JU.BS");c(c$,"intersectPlane",
function(a,b,d){return(null==this.triangulator?this.triangulator=J.api.Interface.getUtil("TriangleData",this.vwr,"ms"):this.triangulator).intersectPlane(a,b,d)},"JU.P4,JU.Lst,~N");c(c$,"getUnitCellForAtom",function(a){if(0>a||a>this.ac)return null;if(null!=this.bsModulated){var b=this.getModulation(a),b=null==b?null:b.getSubSystemUnitCell();if(null!=b)return b}return this.getUnitCell(this.at[a].mi)},"~N");c(c$,"clearCache",function(){for(var a=this.mc;0<=--a;)this.am[a].dssrCache=null});c(c$,"getSymMatrices",
function(a){var b=this.getModelSymmetryCount(a);if(0==b)return null;var d=Array(b),c=this.am[a].biosymmetry;null==c&&(c=this.getUnitCell(a));for(a=b;0<=--a;)d[a]=c.getSpaceGroupOperation(a);return d},"~N");c(c$,"getBsBranches",function(a){for(var b=x(a.length/6),d=Array(b),c=new java.util.Hashtable,g=0,e=0;g<b;g++,e+=6)if(!(1>Math.abs(a[e+5]-a[e+4]))){var h=z(a[e+1]),j=z(a[e+2]),k=""+h+"_"+j;if(!c.containsKey(k)){c.put(k,Boolean.TRUE);for(var k=this.vwr.getBranchBitSet(j,h,!0),n=this.at[h].bonds,
h=this.at[h],m=0;m<n.length;m++){var r=n[m];if(r.isCovalent()&&(r=r.getOtherAtom(h).i,r!=j&&k.get(r))){k=null;break}}d[g]=k}}return d},"~A");c(c$,"recalculatePositionDependentQuantities",function(a,b){this.haveStraightness&&this.calculateStraightness();this.recalculateLeadMidpointsAndWingVectors(-1);for(var d=this.getModelBS(a,!1),c=d.nextSetBit(0);0<=c;c=d.nextSetBit(c+1))this.sm.refreshShapeTrajectories(c,a,b);this.averageAtomPoint=null},"JU.BS,JU.M4");c(c$,"moveAtoms",function(a,b,d,c,g,e,h,j){if(null!=
a){for(b=g.nextSetBit(0);0<=b;b=g.nextSetBit(b+1))a.rotTrans(this.at[b]);this.mat4.setM4(a);c=null}else if(!j){null==b?this.matTemp.setM3(d):(this.ptTemp.set(0,0,0),this.matInv.setM3(d),this.matInv.invert(),this.matTemp.mul2(b,d),this.matTemp.mul2(this.matInv,this.matTemp));h?(this.vTemp.setT(e),this.mat4.setIdentity(),this.mat4.setTranslation(this.vTemp),this.mat4t.setToM3(this.matTemp),this.mat4.mul(this.mat4t),this.mat4t.setIdentity(),this.vTemp.scale(-1),this.mat4t.setTranslation(this.vTemp),
this.mat4.mul(this.mat4t)):this.mat4.setToM3(this.matTemp);for(b=g.nextSetBit(0);0<=b;b=g.nextSetBit(b+1))h?this.mat4.rotTrans(this.at[b]):(this.ptTemp.add(this.at[b]),this.mat4.rotTrans(this.at[b]),this.ptTemp.sub(this.at[b])),this.taintAtom(b,2);h||(this.ptTemp.scale(1/g.cardinality()),null==c&&(c=new JU.V3),c.add(this.ptTemp))}if(null!=c){for(b=g.nextSetBit(0);0<=b;b=g.nextSetBit(b+1))this.at[b].add(c);j||(this.mat4t.setIdentity(),this.mat4t.setTranslation(c),this.mat4.mul2(this.mat4t,this.mat4))}this.recalculatePositionDependentQuantities(g,
this.mat4)},"JU.M4,JU.M3,JU.M3,JU.V3,JU.BS,JU.P3,~B,~B");c(c$,"setDihedrals",function(a,b,d){var c=x(a.length/6);1<d&&(d=1);for(var g=0,e=0;g<c;g++,e+=6){var h=b[g];if(!(null==h||h.isEmpty())){var j=this.at[z(a[e+1])],k=JU.V3.newVsub(this.at[z(a[e+2])],j),k=JU.A4.newVA(k,-((a[e+5]-a[e+4])*d)/57.29577951308232);this.matTemp.setAA(k);this.ptTemp.setT(j);for(j=h.nextSetBit(0);0<=j;j=h.nextSetBit(j+1))this.at[j].sub(this.ptTemp),this.matTemp.rotate(this.at[j]),this.at[j].add(this.ptTemp),this.taintAtom(j,
2)}}},"~A,~A,~N");c(c$,"setAtomCoordsRelative",function(a,b){this.setAtomsCoordRelative(b,a.x,a.y,a.z);this.mat4.setIdentity();this.vTemp.setT(a);this.mat4.setTranslation(this.vTemp);this.recalculatePositionDependentQuantities(b,this.mat4)},"JU.T3,JU.BS");c(c$,"setAtomCoords",function(a,b,d){this.setAtomCoord2(a,b,d);switch(b){case 1112541202:case 1112541203:case 1112541204:case 1146095631:break;default:this.recalculatePositionDependentQuantities(a,null)}},"JU.BS,~N,~O");c(c$,"invertSelected",function(a,
b,d,c,g){if(null!=a)for(var e=g.nextSetBit(0);0<=e;e=g.nextSetBit(e+1)){d=2*(a.x-this.at[e].x);c=2*(a.y-this.at[e].y);var h=2*(a.z-this.at[e].z);this.setAtomCoordRelative(e,d,c,h)}else if(null!=b){a=JU.V3.new3(b.x,b.y,b.z);a.normalize();for(var j=Math.sqrt(b.x*b.x+b.y*b.y+b.z*b.z),e=g.nextSetBit(0);0<=e;e=g.nextSetBit(e+1))h=2*-JU.Measure.distanceToPlaneD(b,j,this.at[e]),d=a.x*h,c=a.y*h,h*=a.z,this.setAtomCoordRelative(e,d,c,h)}else if(0<=d&&(b=this.at[d],a=b.bonds,null!=a)){g=new JU.BS;h=new JU.Lst;
j=this.vwr.getModelUndeletedAtomsBitSet(b.mi);for(e=0;e<a.length;e++){var k=a[e].getOtherAtom(b);c.get(k.i)?g.or(JU.JmolMolecule.getBranchBitSet(this.at,k.i,j,null,d,!0,!0)):h.addLast(k)}0!=h.size()&&(a=JU.Measure.getCenterAndPoints(h)[0],e=JU.V3.newVsub(b,a),e=JU.Quat.newVA(e,180),this.moveAtoms(null,null,e.getMatrix(),null,g,b,!0,!1))}},"JU.P3,JU.P4,~N,JU.BS,JU.BS");c(c$,"getCellWeights",function(a){var b=null,d=a.nextSetBit(0),c=-1;if(0<=d&&null!=this.getUnitCell(c=this.at[d].mi)){var g=new JU.P3;
this.getModelAtomBitSetIncludingDeleted(c,!0).and(a);b=M(a.cardinality(),0);for(c=0;0<=d;d=a.nextSetBit(d+1))b[c++]=JU.SimpleUnitCell.getCellWeight(this.at[d].getFractionalUnitCoordPt(!0,!1,g))}return b},"JU.BS");c(c$,"getAtomGroupQuaternions",function(a,b,d){for(var c=0,g=new JU.Lst,e=a.nextSetBit(0);0<=e&&c<b;e=a.nextSetBit(e+1)){var h=this.at[e].group,j=h.getQuaternion(d);if(null==j&&(-2147483648==h.seqcode&&(j=h.getQuaternionFrame(this.at)),null==j))continue;c++;g.addLast(j);e=h.lastAtomIndex}return g.toArray(Array(g.size()))},
"JU.BS,~N,~S");c(c$,"getSequenceBits",function(a,b){return this.haveBioModels&&0<a.length?this.bioModel.getSequenceBits(this,a,b):new JU.BS},"~S,JU.BS");c(c$,"calculatePolymers",function(a,b,d,c){this.haveBioModels&&this.bioModel.calculateAllPolymers(this,a,b,d,c)},"~A,~N,~N,JU.BS");c(c$,"getBioPolymerCountInModel",function(a){return this.haveBioModels?this.bioModel.getBioPolymerCountInModel(this,a):0},"~N");c(c$,"getPolymerPointsAndVectors",function(a,b,d,c){if(this.haveBioModels)for(var g=0;g<this.mc;++g)this.am[g].getPolymerPointsAndVectors(a,
b,d,c)},"JU.BS,JU.Lst,~B,~N");c(c$,"recalculateLeadMidpointsAndWingVectors",function(a){this.haveBioModels&&this.bioModel.recalculatePoints(this,a)},"~N");c(c$,"calcRasmolHydrogenBonds",function(a,b,d,c,g,e,h){this.haveBioModels&&this.bioModel.calcRasmolHydrogenBonds(this,a,b,d,c,g,e,h)},"JU.BS,JU.BS,JU.Lst,~B,~N,~B,JU.BS");c(c$,"calculateStraightness",function(){this.haveBioModels&&!this.haveStraightness&&this.bioModel.calculateStraightnessAll(this)});c(c$,"calculateStruts",function(a,b){return this.haveBioModels?
this.bioModel.calculateStruts(this,a,b):0},"JU.BS,JU.BS");c(c$,"getGroupsWithin",function(a,b){return this.haveBioModels?this.bioModel.getGroupsWithinAll(this,a,b):new JU.BS},"~N,JU.BS");c(c$,"getProteinStructureState",function(a,b,d,c){return this.haveBioModels?this.bioModel.getFullProteinStructureState(this,a,b,d,c):""},"JU.BS,~B,~B,~N");c(c$,"calculateStructures",function(a,b,d,c,g){if(!this.haveBioModels)return"";var e=new JU.BS;a=JU.BSUtil.copyInvert(this.modelsOf(a,e),this.mc);if(!g)return this.calculateStructuresAllExcept(a,
b,d,c,!1,!1);for(g=0;g<this.mc;g++)a.get(g)||this.am[g].clearBioPolymers();this.calculatePolymers(null,0,0,a);b=this.calculateStructuresAllExcept(a,b,d,c,!0,!1);this.vwr.shm.resetBioshapes(e);this.setStructureIndexes();return b},"JU.BS,~B,~B,~B,~B");C(c$,"hbondMin",2.5)}),u("JM"),v(["JU.M3","$.P3"],"JM.Orientation",["JU.PT","JU.Escape"],function(){c$=s(function(){this.rotationMatrix=this.saveName=null;this.rotationRadius=this.zoom=this.yTrans=this.xTrans=0;this.navCenter=this.center=null;this.cameraY=
this.cameraX=this.cameraDepth=this.navDepth=this.yNav=this.xNav=NaN;this.navigationMode=this.windowCenteredFlag=!1;this.vwr=this.pymolView=this.moveToText=null;p(this,arguments)},JM,"Orientation");N(c$,function(){this.rotationMatrix=new JU.M3;this.center=new JU.P3;this.navCenter=new JU.P3});t(c$,function(a,b,d){this.vwr=a;null!=d?(this.pymolView=d,this.moveToText="moveTo -1.0 PyMOL "+JU.Escape.eAF(d)):(a.finalizeTransformParameters(),b?(b=a.ms.getInfoM("defaultOrientationMatrix"),null==b?this.rotationMatrix.setScale(1):
this.rotationMatrix.setM3(b)):a.tm.getRotation(this.rotationMatrix),this.xTrans=a.tm.getTranslationXPercent(),this.yTrans=a.tm.getTranslationYPercent(),this.zoom=a.tm.getZoomSetting(),this.center.setT(a.tm.fixedRotationCenter),this.windowCenteredFlag=a.tm.isWindowCentered(),this.rotationRadius=a.getFloat(570425388),this.navigationMode=a.getBoolean(603979887),this.moveToText=a.tm.getMoveToText(-1,!1),this.navigationMode&&(this.xNav=a.tm.getNavigationOffsetPercent("X"),this.yNav=a.tm.getNavigationOffsetPercent("Y"),
this.navDepth=a.tm.navigationDepthPercent,this.navCenter=JU.P3.newP(a.tm.navigationCenter)),0!=a.tm.camera.z&&(this.cameraDepth=a.tm.getCameraDepth(),this.cameraX=a.tm.camera.x,this.cameraY=a.tm.camera.y))},"JV.Viewer,~B,~A");c(c$,"getMoveToText",function(a){return a?"   "+this.moveToText+"\n  save orientation "+JU.PT.esc(this.saveName.substring(12))+";\n":this.moveToText},"~B");c(c$,"restore",function(a,b){b?(this.vwr.setBooleanProperty("windowCentered",this.windowCenteredFlag),this.vwr.setBooleanProperty("navigationMode",
this.navigationMode),null==this.pymolView?this.vwr.moveTo(this.vwr.eval,a,this.center,null,NaN,this.rotationMatrix,this.zoom,this.xTrans,this.yTrans,this.rotationRadius,this.navCenter,this.xNav,this.yNav,this.navDepth,this.cameraDepth,this.cameraX,this.cameraY):this.vwr.tm.moveToPyMOL(this.vwr.eval,a,this.pymolView)):this.vwr.tm.setRotation(this.rotationMatrix);return!0},"~N,~B")}),u("JM"),v(null,"JM.StateScript",["JU.SB","JU.BSUtil","$.Escape"],function(){c$=s(function(){this.modelIndex=0;this.script2=
this.script1=this.bsAtoms2=this.bsAtoms1=this.bsBonds=null;this.inDefinedStateBlock=!1;p(this,arguments)},JM,"StateScript");t(c$,function(a,b,d,c,g,e,h){this.modelIndex=a;this.script1=b;this.bsBonds=JU.BSUtil.copy(d);this.bsAtoms1=JU.BSUtil.copy(c);this.bsAtoms2=JU.BSUtil.copy(g);this.script2=e;this.inDefinedStateBlock=h},"~N,~S,JU.BS,JU.BS,JU.BS,~S,~B");c(c$,"isValid",function(){return null!=this.script1&&0<this.script1.length&&(null==this.bsBonds||0<=this.bsBonds.nextSetBit(0))&&(null==this.bsAtoms1||
0<=this.bsAtoms1.nextSetBit(0))&&(null==this.bsAtoms2||0<=this.bsAtoms2.nextSetBit(0))});j(c$,"toString",function(){if(!this.isValid())return"";var a=JU.SB.newS(this.script1);null!=this.bsBonds&&a.append(" ").append(JU.Escape.eBond(this.bsBonds));null!=this.bsAtoms1&&a.append(" ").append(JU.Escape.eBS(this.bsAtoms1));null!=this.bsAtoms2&&a.append(" ").append(JU.Escape.eBS(this.bsAtoms2));null!=this.script2&&a.append(" ").append(this.script2);a=a.toString();a.endsWith(";")||(a+=";");return a});c(c$,
"isConnect",function(){return 0<=this.script1.indexOf("connect")});c(c$,"deleteAtoms",function(a,b,d){if(a==this.modelIndex)return!1;if(a>this.modelIndex)return!0;JU.BSUtil.deleteBits(this.bsBonds,b);JU.BSUtil.deleteBits(this.bsAtoms1,d);JU.BSUtil.deleteBits(this.bsAtoms2,d);return this.isValid()},"~N,JU.BS,JU.BS");c(c$,"setModelIndex",function(a){this.modelIndex=a},"~N")}),u("JM"),c$=s(function(){this.id="";this.type=" ";this.scale=this.tickLabelFormats=this.ticks=null;this.first=0;this.signFactor=
1;this.reference=null;p(this,arguments)},JM,"TickInfo"),t(c$,function(a){this.ticks=a},"JU.P3"),u("JU"),v(["JU.P3","$.P3i","$.V3"],"JU.BoxInfo",["JU.Lst","$.Measure","$.P4","JU.Point3fi"],function(){c$=s(function(){this.bbVertices=this.bbVector=this.bbCenter=this.bbCorner1=this.bbCorner0=null;this.isScaleSet=!1;this.margin=0;p(this,arguments)},JU,"BoxInfo");N(c$,function(){this.bbCorner0=new JU.P3;this.bbCorner1=new JU.P3;this.bbCenter=new JU.P3;this.bbVector=new JU.V3;this.bbVertices=Array(8);for(var a=
8;0<=--a;)this.bbVertices[a]=new JU.Point3fi;for(a=0;8>a;a++)JU.BoxInfo.unitBboxPoints[a]=JU.P3.new3(-1,-1,-1),JU.BoxInfo.unitBboxPoints[a].scaleAdd2(2,JU.BoxInfo.unitCubePoints[a],JU.BoxInfo.unitBboxPoints[a])});t(c$,function(){this.reset()});c(c$,"intersectPlane",function(a,b,d,c){var g=new JU.Lst;g.addLast(this.getCanonicalCopy(d));return a.intersectPlane(b,g,c)},"JM.ModelSet,JU.P4,~N,~N");c(c$,"getCanonicalCopy",function(a){return JU.BoxInfo.getCanonicalCopy(this.bbVertices,a)},"~N");c$.getCanonicalCopy=
c(c$,"getCanonicalCopy",function(a,b){for(var d=Array(8),c=0;8>c;c++)d[JU.BoxInfo.toCanonical[c]]=JU.P3.newP(a[c]);JU.BoxInfo.scaleBox(d,b);return d},"~A,~N");c$.scaleBox=c(c$,"scaleBox",function(a,b){if(!(0==b||1==b)){for(var d=new JU.P3,c=new JU.V3,g=0;8>g;g++)d.add(a[g]);d.scale(0.125);for(g=0;8>g;g++)c.sub2(a[g],d),c.scale(b),a[g].add2(d,c)}},"~A,~N");c$.getFacesFromCriticalPoints=c(c$,"getFacesFromCriticalPoints",function(a){for(var b=Array(6),d=new JU.V3,c=new JU.V3,g=new JU.P3,e=new JU.P3,
h=new JU.P3,j=Array(8),k=0;8>k;k++)j[k]=JU.P3.newP(a[0]),1==(k&1)&&j[k].add(a[1]),2==(k&2)&&j[k].add(a[2]),4==(k&4)&&j[k].add(a[3]);for(k=0;6>k;k++)g.setT(j[JU.BoxInfo.facePoints[k].x]),e.setT(j[JU.BoxInfo.facePoints[k].y]),h.setT(j[JU.BoxInfo.facePoints[k].z]),b[k]=JU.Measure.getPlaneThroughPoints(g,e,h,d,c,new JU.P4);return b},"~A");c$.getCriticalPoints=c(c$,"getCriticalPoints",function(a,b){var d=JU.P3.newP(a[0]),c=JU.P3.newP(a[1]),g=JU.P3.newP(a[2]),e=JU.P3.newP(a[4]);c.sub(d);g.sub(d);e.sub(d);
null!=b&&d.add(b);return[d,c,g,e]},"~A,JU.T3");c(c$,"getBoundBoxCenter",function(){this.isScaleSet||this.setBbcage(1);return this.bbCenter});c(c$,"getBoundBoxCornerVector",function(){this.isScaleSet||this.setBbcage(1);return this.bbVector});c(c$,"getBoundBoxPoints",function(a){this.isScaleSet||this.setBbcage(1);return a?[this.bbCenter,JU.P3.newP(this.bbVector),this.bbCorner0,this.bbCorner1]:[this.bbCorner0,this.bbCorner1]},"~B");c(c$,"getBoundBoxVertices",function(){this.isScaleSet||this.setBbcage(1);
return this.bbVertices});c(c$,"setBoundBox",function(a,b,d,c){if(null!=a){if(0==c)return;if(d){if(0==a.distance(b))return;this.bbCorner0.set(Math.min(a.x,b.x),Math.min(a.y,b.y),Math.min(a.z,b.z));this.bbCorner1.set(Math.max(a.x,b.x),Math.max(a.y,b.y),Math.max(a.z,b.z))}else{if(0==b.x||0==b.y&&0==b.z)return;this.bbCorner0.set(a.x-b.x,a.y-b.y,a.z-b.z);this.bbCorner1.set(a.x+b.x,a.y+b.y,a.z+b.z)}}this.setBbcage(c)},"JU.P3,JU.P3,~B,~N");c(c$,"reset",function(){this.isScaleSet=!1;this.bbCorner0.set(3.4028235E38,
3.4028235E38,3.4028235E38);this.bbCorner1.set(-3.4028235E38,-3.4028235E38,-3.4028235E38)});c(c$,"setMargin",function(a){this.margin=a},"~N");c(c$,"addBoundBoxPoint",function(a){this.isScaleSet=!1;JU.BoxInfo.addPoint(a,this.bbCorner0,this.bbCorner1,this.margin)},"JU.T3");c$.addPoint=c(c$,"addPoint",function(a,b,d,c){a.x-c<b.x&&(b.x=a.x-c);a.x+c>d.x&&(d.x=a.x+c);a.y-c<b.y&&(b.y=a.y-c);a.y+c>d.y&&(d.y=a.y+c);a.z-c<b.z&&(b.z=a.z-c);a.z+c>d.z&&(d.z=a.z+c)},"JU.T3,JU.T3,JU.T3,~N");c$.addPointXYZ=c(c$,"addPointXYZ",
function(a,b,d,c,g,e){a-e<c.x&&(c.x=a-e);a+e>g.x&&(g.x=a+e);b-e<c.y&&(c.y=b-e);b+e>g.y&&(g.y=b+e);d-e<c.z&&(c.z=d-e);d+e>g.z&&(g.z=d+e)},"~N,~N,~N,JU.P3,JU.P3,~N");c(c$,"setBbcage",function(a){this.isScaleSet=!0;this.bbCenter.add2(this.bbCorner0,this.bbCorner1);this.bbCenter.scale(0.5);this.bbVector.sub2(this.bbCorner1,this.bbCenter);0<a?this.bbVector.scale(a):(this.bbVector.x-=a/2,this.bbVector.y-=a/2,this.bbVector.z-=a/2);for(a=8;0<=--a;){var b=this.bbVertices[a];b.setT(JU.BoxInfo.unitBboxPoints[a]);
b.x*=this.bbVector.x;b.y*=this.bbVector.y;b.z*=this.bbVector.z;b.add(this.bbCenter)}this.bbCorner0.setT(this.bbVertices[0]);this.bbCorner1.setT(this.bbVertices[7])},"~N");c(c$,"isWithin",function(a){this.isScaleSet||this.setBbcage(1);return a.x>=this.bbCorner0.x&&a.x<=this.bbCorner1.x&&a.y>=this.bbCorner0.y&&a.y<=this.bbCorner1.y&&a.z>=this.bbCorner0.z&&a.z<=this.bbCorner1.z},"JU.P3");C(c$,"bbcageTickEdges","z\x00\x00yx\x00\x00\x00\x00\x00\x00\x00".split(""),"uccageTickEdges","zyx\x00\x00\x00\x00\x00\x00\x00\x00\x00".split(""),
"edges",[0,1,0,2,0,4,1,3,1,5,2,3,2,6,3,7,4,5,4,6,5,7,6,7]);c$.unitCubePoints=c$.prototype.unitCubePoints=[JU.P3.new3(0,0,0),JU.P3.new3(0,0,1),JU.P3.new3(0,1,0),JU.P3.new3(0,1,1),JU.P3.new3(1,0,0),JU.P3.new3(1,0,1),JU.P3.new3(1,1,0),JU.P3.new3(1,1,1)];c$.facePoints=c$.prototype.facePoints=[JU.P3i.new3(4,0,6),JU.P3i.new3(4,6,5),JU.P3i.new3(5,7,1),JU.P3i.new3(1,3,0),JU.P3i.new3(6,2,7),JU.P3i.new3(1,0,5)];C(c$,"toCanonical",[0,3,4,7,1,2,5,6]);c$.cubeVertexOffsets=c$.prototype.cubeVertexOffsets=[JU.P3i.new3(0,
0,0),JU.P3i.new3(1,0,0),JU.P3i.new3(1,0,1),JU.P3i.new3(0,0,1),JU.P3i.new3(0,1,0),JU.P3i.new3(1,1,0),JU.P3i.new3(1,1,1),JU.P3i.new3(0,1,1)];c$.unitBboxPoints=c$.prototype.unitBboxPoints=Array(8)}),u("JU"),v(["JU.BS"],"JU.BSUtil",null,function(){c$=A(JU,"BSUtil");c$.newAndSetBit=c(c$,"newAndSetBit",function(a){var b=JU.BS.newN(a+1);b.set(a);return b},"~N");c$.areEqual=c(c$,"areEqual",function(a,b){return null==a||null==b?null==a&&null==b:a.equals(b)},"JU.BS,JU.BS");c$.haveCommon=c(c$,"haveCommon",function(a,
b){return null==a||null==b?!1:a.intersects(b)},"JU.BS,JU.BS");c$.cardinalityOf=c(c$,"cardinalityOf",function(a){return null==a?0:a.cardinality()},"JU.BS");c$.newBitSet2=c(c$,"newBitSet2",function(a,b){var d=JU.BS.newN(b);d.setBits(a,b);return d},"~N,~N");c$.setAll=c(c$,"setAll",function(a){var b=JU.BS.newN(a);b.setBits(0,a);return b},"~N");c$.andNot=c(c$,"andNot",function(a,b){null!=b&&null!=a&&a.andNot(b);return a},"JU.BS,JU.BS");c$.copy=c(c$,"copy",function(a){return null==a?null:a.clone()},"JU.BS");
c$.copy2=c(c$,"copy2",function(a,b){if(null==a||null==b)return null;b.clearAll();b.or(a);return b},"JU.BS,JU.BS");c$.copyInvert=c(c$,"copyInvert",function(a,b){return null==a?null:JU.BSUtil.andNot(JU.BSUtil.setAll(b),a)},"JU.BS,~N");c$.invertInPlace=c(c$,"invertInPlace",function(a,b){return JU.BSUtil.copy2(JU.BSUtil.copyInvert(a,b),a)},"JU.BS,~N");c$.toggleInPlace=c(c$,"toggleInPlace",function(a,b){a.equals(b)?a.clearAll():0==JU.BSUtil.andNot(JU.BSUtil.copy(b),a).length()?JU.BSUtil.andNot(a,b):a.or(b);
return a},"JU.BS,JU.BS");c$.deleteBits=c(c$,"deleteBits",function(a,b){if(null==a||null==b)return a;var d=b.nextSetBit(0);if(0>d)return a;var c=a.length(),g=Math.min(c,b.length()),e;for(e=b.nextClearBit(d);e<g&&0<=e;e=b.nextClearBit(e+1))a.setBitTo(d++,a.get(e));for(e=g;e<c;e++)a.setBitTo(d++,a.get(e));d<c&&a.clearBits(d,c);return a},"JU.BS,JU.BS");c$.shiftBits=c(c$,"shiftBits",function(a,b,d,c){if(!(null==a||null==b)){for(var g=b.length(),e=JU.BS.newN(g),h=!1,j=!1,k=d,n=0,m=0;n<g&&m<c;n++)b.get(n)?
(j&&e.set(n),k=d,h=!1):a.get(m++)?(e.set(n),k&&(k=!1,j=h=!0)):k&&!h&&(j=!1);a.clearAll();a.or(e)}},"JU.BS,JU.BS,~B,~N");c$.offset=c(c$,"offset",function(a,b,d){if(null!=a){for(var c=JU.BS.newN(a.length()+d),g=a.nextSetBit(0);g>=b;g=a.nextSetBit(g+1))c.set(g+d);JU.BSUtil.copy2(c,a)}},"JU.BS,~N,~N");c$.setMapBitSet=c(c$,"setMapBitSet",function(a,b,d,c){var g;a.containsKey(c)?g=a.get(c):a.put(c,g=new JU.BS);g.setBits(b,d+1)},"java.util.Map,~N,~N,~S");c$.emptySet=c$.prototype.emptySet=new JU.BS}),u("JU"),
v(["JU.Int2IntHash"],"JU.C","java.lang.Byte $.Float JU.AU $.CU $.PT $.SB J.c.PAL JU.Escape $.Logger".split(" "),function(){c$=A(JU,"C");t(c$,function(){});c$.getColix=c(c$,"getColix",function(a){if(0==a)return 0;var b=0;-16777216!=(a&4278190080)&&(b=JU.C.getTranslucentFlag(a>>24&255),a|=4278190080);var c=JU.C.colixHash.get(a);3==(c&3)&&(b=0);return(0<c?c:JU.C.allocateColix(a,!1))|b},"~N");c$.allocateColix=c(c$,"allocateColix",function(a,b){var c;if(b)c=2047;else{for(c=JU.C.colixMax;4<=--c;)if((a&
16777215)==(JU.C.argbs[c]&16777215))return c;c=JU.C.colixMax}if(c>=JU.C.argbs.length){var e=b?c+1:2*JU.C.colixMax;2048<e&&(e=2048);JU.C.argbs=JU.AU.arrayCopyI(JU.C.argbs,e);null!=JU.C.argbsGreyscale&&(JU.C.argbsGreyscale=JU.AU.arrayCopyI(JU.C.argbsGreyscale,e))}JU.C.argbs[c]=a;null!=JU.C.argbsGreyscale&&(JU.C.argbsGreyscale[c]=JU.CU.toFFGGGfromRGB(a));JU.C.colixHash.put(a,c);return 2047>c?JU.C.colixMax++:JU.C.colixMax},"~N,~B");c$.setLastGrey=c(c$,"setLastGrey",function(a){JU.C.calcArgbsGreyscale();
JU.C.argbsGreyscale[2047]=JU.CU.toFFGGGfromRGB(a)},"~N");c$.calcArgbsGreyscale=c(c$,"calcArgbsGreyscale",function(){if(null==JU.C.argbsGreyscale){for(var a=E(JU.C.argbs.length,0),b=JU.C.argbs.length;4<=--b;)a[b]=JU.CU.toFFGGGfromRGB(JU.C.argbs[b]);JU.C.argbsGreyscale=a}});c$.getArgbGreyscale=c(c$,"getArgbGreyscale",function(a){null==JU.C.argbsGreyscale&&JU.C.calcArgbsGreyscale();return JU.C.argbsGreyscale[a&-30721]},"~N");c$.getColixO=c(c$,"getColixO",function(a){if(null==a)return 0;if(q(a,J.c.PAL))return a===
J.c.PAL.NONE?0:2;if(q(a,Integer))return JU.C.getColix(a.intValue());if(q(a,String))return JU.C.getColixS(a);if(q(a,Byte))return 0==a.byteValue()?0:2;JU.Logger.debugging&&JU.Logger.debug("?? getColix("+a+")");return 22},"~O");c$.getTranslucentFlag=c(c$,"getTranslucentFlag",function(a){if(0==a)return 0;0>a&&(a=128);return Float.isNaN(a)||255<=a||1==a?16384:(x(Math.floor(1>a?256*a:15<=a?a:9>=a?x(Math.floor(a-1))<<5:256))>>5&15)<<11},"~N");c$.isColixLastAvailable=c(c$,"isColixLastAvailable",function(a){return 0<
a&&2047==(a&2047)},"~N");c$.getArgb=c(c$,"getArgb",function(a){return JU.C.argbs[a&-30721]},"~N");c$.isColixColorInherited=c(c$,"isColixColorInherited",function(a){switch(a){case 0:case 1:return!0;default:return 1==(a&-30721)}},"~N");c$.getColixInherited=c(c$,"getColixInherited",function(a,b){switch(a){case 0:return b;case 1:return b&-30721;default:return 1==(a&-30721)?b&-30721|a&30720:a}},"~N,~N");c$.isColixTranslucent=c(c$,"isColixTranslucent",function(a){return 0!=(a&30720)},"~N");c$.getChangeableColixIndex=
c(c$,"getChangeableColixIndex",function(a){return 0<=a?-1:a&2047},"~N");c$.getColixTranslucent3=c(c$,"getColixTranslucent3",function(a,b,c){a&=-30721;0==a&&(a=1);return b?a|JU.C.getTranslucentFlag(c):a},"~N,~B,~N");c$.copyColixTranslucency=c(c$,"copyColixTranslucency",function(a,b){return JU.C.getColixTranslucent3(b,JU.C.isColixTranslucent(a),JU.C.getColixTranslucencyLevel(a))},"~N,~N");c$.getColixTranslucencyFractional=c(c$,"getColixTranslucencyFractional",function(a){a=JU.C.getColixTranslucencyLevel(a);
return-1==a?0.5:0==a?0:255==a?1:a/256},"~N");c$.getColixTranslucencyLevel=c(c$,"getColixTranslucencyLevel",function(a){a=a>>11&15;switch(a){case 0:return 0;case 1:case 2:case 3:case 4:case 5:case 6:case 7:return a<<5;case 15:return-1;default:return 255}},"~N");c$.getColixS=c(c$,"getColixS",function(a){var b=JU.CU.getArgbFromString(a);return 0!=b?JU.C.getColix(b):"none".equalsIgnoreCase(a)?0:"opaque".equalsIgnoreCase(a)?1:2},"~S");c$.getColixArray=c(c$,"getColixArray",function(a){if(null==a||0==a.length)return null;
a=JU.PT.getTokens(a);for(var b=W(a.length,0),c=0;c<a.length;c++)if(b[c]=JU.C.getColix(JU.CU.getArgbFromString(a[c])),0==b[c])return null;return b},"~S");c$.getHexCode=c(c$,"getHexCode",function(a){return JU.Escape.escapeColor(JU.C.getArgb(a))},"~N");c$.getHexCodes=c(c$,"getHexCodes",function(a){if(null==a)return null;for(var b=new JU.SB,c=0;c<a.length;c++)b.append(0==c?"":" ").append(JU.C.getHexCode(a[c]));return b.toString()},"~A");c$.getColixTranslucent=c(c$,"getColixTranslucent",function(a){var b=
a>>24&255;return 255==b?JU.C.getColix(a):JU.C.getColixTranslucent3(JU.C.getColix(a),!0,b/255)},"~N");c$.getBgContrast=c(c$,"getBgContrast",function(a){return 128>(JU.CU.toFFGGGfromRGB(a)&255)?8:4},"~N");C(c$,"INHERIT_ALL",0,"INHERIT_COLOR",1,"USE_PALETTE",2,"RAW_RGB",3,"SPECIAL_COLIX_MAX",4,"colixMax",4,"argbs",E(128,0),"argbsGreyscale",null);c$.colixHash=c$.prototype.colixHash=new JU.Int2IntHash(256);C(c$,"RAW_RGB_INT",3,"UNMASK_CHANGEABLE_TRANSLUCENT",2047,"CHANGEABLE_MASK",32768,"LAST_AVAILABLE_COLIX",
2047,"TRANSLUCENT_SHIFT",11,"ALPHA_SHIFT",13,"TRANSLUCENT_MASK",30720,"TRANSPARENT",16384,"OPAQUE_MASK",-30721,"BLACK",4,"ORANGE",5,"PINK",6,"BLUE",7,"WHITE",8,"CYAN",9,"RED",10,"GREEN",11,"GRAY",12,"SILVER",13,"LIME",14,"MAROON",15,"NAVY",16,"OLIVE",17,"PURPLE",18,"TEAL",19,"MAGENTA",20,"YELLOW",21,"HOTPINK",22,"GOLD",23);for(var a=[4278190080,4294944E3,4294951115,4278190335,4294967295,4278255615,4294901760,4278222848,4286611584,4290822336,4278255360,4286578688,4278190208,4286611456,4286578816,4278222976,
4294902015,4294967040,4294928820,4294956800],b=0;b<a.length;++b)JU.C.getColix(a[b])}),u("JU"),v(null,"JU.ColorEncoder","java.lang.Boolean $.Float java.util.Hashtable JU.AU $.CU $.Lst $.PT J.c.PAL JU.C $.Escape $.Logger JV.JC".split(" "),function(){c$=s(function(){this.argbsAmino=this.argbsShapely=this.argbsRwb=this.argbsRoygb=this.argbsCpk=this.paletteFriendly=this.paletteWB=this.paletteBW=this.vwr=null;this.ihalf=0;this.schemes=null;this.currentPalette=0;this.currentSegmentCount=1;this.isTranslucent=
!1;this.hi=this.lo=0;this.isReversed=!1;this.thisScale=this.userScale=null;this.thisName="scheme";this.isColorIndex=!1;this.ce=null;p(this,arguments)},JU,"ColorEncoder");N(c$,function(){this.userScale=[-8355712];this.thisScale=[-8355712]});t(c$,function(a,b){null==a?(this.vwr=b,this.schemes=new java.util.Hashtable,this.argbsCpk=J.c.PAL.argbsCpk,this.argbsRoygb=JV.JC.argbsRoygbScale,this.argbsRwb=JV.JC.argbsRwbScale,this.argbsShapely=this.argbsAmino=null,this.ihalf=x(JV.JC.argbsRoygbScale.length/3),
this.ce=this):(this.ce=a,this.vwr=a.vwr,this.schemes=a.schemes)},"JU.ColorEncoder,JV.Viewer");c$.getSchemeIndex=c(c$,"getSchemeIndex",function(a){for(var b=0;b<JU.ColorEncoder.colorSchemes.length;b++)if(JU.ColorEncoder.colorSchemes[b].equalsIgnoreCase(a))return 16<=b?b-16:13>b?b:-b;return-1},"~S");c$.fixName=c(c$,"fixName",function(a){if(a.equalsIgnoreCase("byelement"))return"byelement_jmol";var b=JU.ColorEncoder.getSchemeIndex(a);return 0<=b?JU.ColorEncoder.colorSchemes[b]:a.toLowerCase()},"~S");
c(c$,"makeColorScheme",function(a,b,d){a=JU.ColorEncoder.fixName(a);if(null==b){this.schemes.remove(a);a=this.createColorScheme(a,!1,d);if(d)switch(a){case 2147483647:return 0;case 12:this.paletteFriendly=this.getPaletteAC();break;case 10:this.paletteBW=this.getPaletteBW();break;case 11:this.paletteWB=this.getPaletteWB();break;case 0:case 1:this.argbsRoygb=JV.JC.argbsRoygbScale;break;case 6:case 7:this.argbsRwb=JV.JC.argbsRwbScale;break;case 2:this.argbsCpk=J.c.PAL.argbsCpk;break;case 3:JU.ColorEncoder.getRasmolScale();
break;case 5:this.getAmino();break;case 4:this.getShapely()}return a}this.schemes.put(a,b);this.setThisScheme(a,b);a=this.createColorScheme(a,!1,d);if(d)switch(a){case 10:this.paletteBW=this.thisScale;break;case 11:this.paletteWB=this.thisScale;break;case 0:case 1:this.argbsRoygb=this.thisScale;this.ihalf=x(this.argbsRoygb.length/3);break;case 6:case 7:this.argbsRwb=this.thisScale;break;case 2:this.argbsCpk=this.thisScale;break;case 5:this.argbsAmino=this.thisScale;break;case 4:this.argbsShapely=
this.thisScale}return-1},"~S,~A,~B");c(c$,"getShapely",function(){return null==this.argbsShapely?this.argbsShapely=this.vwr.getJBR().getArgbs(1073742144):this.argbsShapely});c(c$,"getAmino",function(){return null==this.argbsAmino?this.argbsAmino=this.vwr.getJBR().getArgbs(3145730):this.argbsAmino});c(c$,"createColorScheme",function(a,b,d){a=a.toLowerCase();if(a.equals("inherit"))return 15;var c=Math.max(a.indexOf("="),a.indexOf("["));if(0<=c){b=JU.PT.replaceAllCharacters(a.substring(0,c)," =","");
0<b.length&&(d=!0);var g=0;a.length>c+1&&!a.contains("[")&&(a="["+a.substring(c+1).trim()+"]",a=JU.PT.rep(a.$replace("\n"," "),"  "," "),a=JU.PT.rep(a,", ",",").$replace(" ",","),a=JU.PT.rep(a,",","]["));for(c=-1;0<=(c=a.indexOf("[",c+1));)g++;if(0==g)return this.makeColorScheme(b,null,d);for(var e=E(g,0),g=0;0<=(c=a.indexOf("[",c+1));){var h=a.indexOf("]",c);0>h&&(h=a.length-1);var j=JU.CU.getArgbFromString(a.substring(c,h+1));0==j&&(j=JU.CU.getArgbFromString(a.substring(c+1,h).trim()));if(0==j)return JU.Logger.error("error in color value: "+
a.substring(c,h+1)),0;e[g++]=j}return b.equals("user")?(this.setUserScale(e),-13):this.makeColorScheme(b,e,d)}a=JU.ColorEncoder.fixName(a);d=JU.ColorEncoder.getSchemeIndex(a);return this.schemes.containsKey(a)?(this.setThisScheme(a,this.schemes.get(a)),d):-1!=d?d:b?0:2147483647},"~S,~B,~B");c(c$,"setUserScale",function(a){this.ce.userScale=a;this.makeColorScheme("user",a,!1)},"~A");c(c$,"getColorSchemeArray",function(a){switch(a){case -1:return this.thisScale;case 0:return this.ce.argbsRoygb;case 1:return JU.AU.arrayCopyRangeRevI(this.ce.argbsRoygb,
0,-1);case 8:return JU.AU.arrayCopyRangeI(this.ce.argbsRoygb,0,this.ce.ihalf);case 9:var b=JU.AU.arrayCopyRangeI(this.ce.argbsRoygb,this.ce.argbsRoygb.length-2*this.ce.ihalf,-1);a=E(this.ce.ihalf,0);for(var d=a.length,c=b.length;0<=--d&&0<=--c;)a[d]=b[c--];return a;case 12:return this.getPaletteAC();case 10:return this.getPaletteBW();case 11:return this.getPaletteWB();case 6:return this.ce.argbsRwb;case 7:return JU.AU.arrayCopyRangeRevI(this.ce.argbsRwb,0,-1);case 2:return this.ce.argbsCpk;case 3:return JU.ColorEncoder.getRasmolScale();
case 4:return this.ce.getShapely();case 5:return this.ce.getAmino();case -13:return this.ce.userScale;case -14:return JU.AU.arrayCopyRangeRevI(this.ce.userScale,0,-1);default:return null}},"~N");c(c$,"getColorIndexFromPalette",function(a,b,d,c,g){c=JU.C.getColix(this.getArgbFromPalette(a,b,d,c));g&&(a=(d-a)/(d-b),1<a?a=1:0.125>a&&(a=0.125),c=JU.C.getColixTranslucent3(c,!0,a));return c},"~N,~N,~N,~N,~B");c(c$,"getPaletteColorCount",function(a){switch(a){case -1:return this.thisScale.length;case 10:case 11:return this.getPaletteBW().length;
case 0:case 1:return this.ce.argbsRoygb.length;case 8:case 9:return this.ce.ihalf;case 6:case 7:return this.ce.argbsRwb.length;case -13:case -14:return this.ce.userScale.length;case 2:return this.argbsCpk.length;case 3:return JU.ColorEncoder.getRasmolScale().length;case 4:return this.ce.getShapely().length;case 5:return this.ce.getAmino().length;case 12:return this.getPaletteAC().length;default:return 0}},"~N");c(c$,"getArgbFromPalette",function(a,b,d,c){if(Float.isNaN(a))return-8355712;var g=this.getPaletteColorCount(c);
switch(c){case -1:return this.isColorIndex&&(b=0,d=this.thisScale.length),this.thisScale[JU.ColorEncoder.quantize4(a,b,d,g)];case 10:return this.getPaletteBW()[JU.ColorEncoder.quantize4(a,b,d,g)];case 11:return this.getPaletteWB()[JU.ColorEncoder.quantize4(a,b,d,g)];case 0:return this.ce.argbsRoygb[JU.ColorEncoder.quantize4(a,b,d,g)];case 1:return this.ce.argbsRoygb[JU.ColorEncoder.quantize4(-a,-d,-b,g)];case 8:return this.ce.argbsRoygb[JU.ColorEncoder.quantize4(a,b,d,g)];case 9:return this.ce.argbsRoygb[this.ce.ihalf+
2*JU.ColorEncoder.quantize4(a,b,d,g)];case 6:return this.ce.argbsRwb[JU.ColorEncoder.quantize4(a,b,d,g)];case 7:return this.ce.argbsRwb[JU.ColorEncoder.quantize4(-a,-d,-b,g)];case -13:return 0==this.ce.userScale.length?-8355712:this.ce.userScale[JU.ColorEncoder.quantize4(a,b,d,g)];case -14:return 0==this.ce.userScale.length?-8355712:this.ce.userScale[JU.ColorEncoder.quantize4(-a,-d,-b,g)];case 2:return this.ce.argbsCpk[JU.ColorEncoder.colorIndex(a,g)];case 3:return JU.ColorEncoder.getRasmolScale()[JU.ColorEncoder.colorIndex(a,
g)];case 4:return this.ce.getShapely()[JU.ColorEncoder.colorIndex(a,g)];case 5:return this.ce.getAmino()[JU.ColorEncoder.colorIndex(a,g)];case 12:return this.getPaletteAC()[JU.ColorEncoder.colorIndexRepeat(a,g)];default:return-8355712}},"~N,~N,~N,~N");c(c$,"setThisScheme",function(a,b){this.thisName=a;this.thisScale=b;a.equals("user")&&(this.userScale=b);this.isColorIndex=0==a.indexOf("byelement")||0==a.indexOf("byresidue")},"~S,~A");c(c$,"getArgb",function(a){return this.isReversed?this.getArgbFromPalette(-a,
-this.hi,-this.lo,this.currentPalette):this.getArgbFromPalette(a,this.lo,this.hi,this.currentPalette)},"~N");c(c$,"getArgbMinMax",function(a,b,d){return this.isReversed?this.getArgbFromPalette(-a,-d,-b,this.currentPalette):this.getArgbFromPalette(a,b,d,this.currentPalette)},"~N,~N,~N");c(c$,"getColorIndex",function(a){return this.isReversed?this.getColorIndexFromPalette(-a,-this.hi,-this.lo,this.currentPalette,this.isTranslucent):this.getColorIndexFromPalette(a,this.lo,this.hi,this.currentPalette,
this.isTranslucent)},"~N");c(c$,"getColorKey",function(){for(var a=new java.util.Hashtable,b=this.getPaletteColorCount(this.currentPalette),d=new JU.Lst,c=M(b+1,0),g=(this.hi-this.lo)/b,e=g*(this.isReversed?-0.5:0.5),h=0;h<b;h++)c[h]=this.isReversed?this.hi-h*g:this.lo+h*g,d.addLast(JU.CU.colorPtFromInt(this.getArgb(c[h]+e),null));c[b]=this.isReversed?this.lo:this.hi;a.put("values",c);a.put("colors",d);a.put("min",Float.$valueOf(this.lo));a.put("max",Float.$valueOf(this.hi));a.put("reversed",Boolean.$valueOf(this.isReversed));
a.put("name",this.getCurrentColorSchemeName());return a});c(c$,"getColorScheme",function(){return(this.isTranslucent?"translucent ":"")+(0>this.currentPalette?JU.ColorEncoder.getColorSchemeList(this.getColorSchemeArray(this.currentPalette)):this.getColorSchemeName(this.currentPalette))});c(c$,"setColorScheme",function(a,b){this.isTranslucent=b;null!=a&&(this.currentPalette=this.createColorScheme(a,!0,!1))},"~S,~B");c(c$,"setRange",function(a,b,d){3.4028235E38==b&&(a=1,b=this.getPaletteColorCount(this.currentPalette)+
1);this.lo=Math.min(a,b);this.hi=Math.max(a,b);this.isReversed=d},"~N,~N,~B");c(c$,"getCurrentColorSchemeName",function(){return this.getColorSchemeName(this.currentPalette)});c(c$,"getColorSchemeName",function(a){var b=Math.abs(a);return-1==a?this.thisName:b<JU.ColorEncoder.colorSchemes.length&&0<=b?JU.ColorEncoder.colorSchemes[b]:null},"~N");c$.getColorSchemeList=c(c$,"getColorSchemeList",function(a){if(null==a)return"";for(var b="",d=0;d<a.length;d++)b+=(0==d?"":" ")+JU.Escape.escapeColor(a[d]);
return b},"~A");c$.getRasmolScale=c(c$,"getRasmolScale",function(){if(null!=JU.ColorEncoder.rasmolScale)return JU.ColorEncoder.rasmolScale;JU.ColorEncoder.rasmolScale=E(J.c.PAL.argbsCpk.length,0);for(var a=J.c.PAL.argbsCpkRasmol[0]|4278190080,b=JU.ColorEncoder.rasmolScale.length;0<=--b;)JU.ColorEncoder.rasmolScale[b]=a;for(b=J.c.PAL.argbsCpkRasmol.length;0<=--b;)a=J.c.PAL.argbsCpkRasmol[b],JU.ColorEncoder.rasmolScale[a>>24]=a|4278190080;return JU.ColorEncoder.rasmolScale});c(c$,"getPaletteAC",function(){return null==
this.ce.paletteFriendly?this.ce.paletteFriendly=[8421504,1067945,11141282,13235712,16753152,2640510,8331387,10467374,12553008,339310,7209065,8626176,10906112,4488148,13907405,14219839,16759360,6984660,13918415,14809713,16764019]:this.ce.paletteFriendly});c(c$,"getPaletteWB",function(){if(null!=this.ce.paletteWB)return this.ce.paletteWB;for(var a=E(JV.JC.argbsRoygbScale.length,0),b=0;b<a.length;b++){var d=1/a.length*(a.length-b);a[b]=JU.CU.colorTriadToFFRGB(d,d,d)}return this.ce.paletteWB=a});c$.getPaletteAtoB=
c(c$,"getPaletteAtoB",function(a,b,d){2>d&&(d=JV.JC.argbsRoygbScale.length);var c=E(d,0),g=M(3,0),e=M(3,0);JU.CU.toRGB3f(a,g);JU.CU.toRGB3f(b,e);a=(e[0]-g[0])/(d-1);b=(e[1]-g[1])/(d-1);for(var e=(e[2]-g[2])/(d-1),h=0;h<d;h++)c[h]=JU.CU.colorTriadToFFRGB(g[0]+a*h,g[1]+b*h,g[2]+e*h);return c},"~N,~N,~N");c(c$,"getPaletteBW",function(){if(null!=this.ce.paletteBW)return this.ce.paletteBW;for(var a=E(JV.JC.argbsRoygbScale.length,0),b=0;b<a.length;b++){var d=1/a.length*b;a[b]=JU.CU.colorTriadToFFRGB(d,
d,d)}return this.ce.paletteBW=a});c(c$,"quantize",function(a,b){var d=this.getPaletteColorCount(this.currentPalette);a=(z(a*d)+(b?0:1))/d;return 0>=a?this.lo:1<=a?this.hi:this.lo+(this.hi-this.lo)*a},"~N,~B");c$.quantize4=c(c$,"quantize4",function(a,b,d,c){d-=b;if(0>=d||Float.isNaN(a))return x(c/2);a-=b;if(0>=a)return 0;a=z(a/(d/c)+1E-4);a>=c&&(a=c-1);return a},"~N,~N,~N,~N");c$.colorIndex=c(c$,"colorIndex",function(a,b){return x(Math.floor(0>=a||a>=b?0:a))},"~N,~N");c$.colorIndexRepeat=c(c$,"colorIndexRepeat",
function(a,b){return x(Math.floor(0>=a?0:a))%b},"~N,~N");C(c$,"GRAY",4286611584,"BYELEMENT_PREFIX","byelement","BYRESIDUE_PREFIX","byresidue");c$.BYELEMENT_JMOL=c$.prototype.BYELEMENT_JMOL="byelement_jmol";c$.BYELEMENT_RASMOL=c$.prototype.BYELEMENT_RASMOL="byelement_rasmol";c$.BYRESIDUE_SHAPELY=c$.prototype.BYRESIDUE_SHAPELY="byresidue_shapely";c$.BYRESIDUE_AMINO=c$.prototype.BYRESIDUE_AMINO="byresidue_amino";C(c$,"CUSTOM",-1,"ROYGB",0,"BGYOR",1,"JMOL",2,"RASMOL",3,"SHAPELY",4,"AMINO",5,"RWB",6,"BWR",
7,"LOW",8,"HIGH",9,"BW",10,"WB",11,"FRIENDLY",12,"USER",-13,"RESU",-14,"INHERIT",15,"ALT",16);c$.colorSchemes=c$.prototype.colorSchemes="roygb bgyor byelement_jmol byelement_rasmol byresidue_shapely byresidue_amino rwb bwr low high bw wb friendly user resu inherit rgb bgr jmol rasmol byresidue".split(" ");C(c$,"rasmolScale",null,"argbsChainAtom",null,"argbsChainHetero",null)}),u("JU"),v(null,"JU.CommandHistory",["JU.Lst"],function(){c$=s(function(){this.commandList=null;this.maxSize=100;this.cursorPos=
this.nextCommand=0;this.isOn=!0;p(this,arguments)},JU,"CommandHistory");t(c$,function(){this.reset(100)});c(c$,"clear",function(){this.reset(this.maxSize)});c(c$,"reset",function(a){this.maxSize=a;this.commandList=new JU.Lst;this.nextCommand=0;this.commandList.addLast("");this.cursorPos=0},"~N");c(c$,"setMaxSize",function(a){if(a!=this.maxSize){for(2>a&&(a=2);this.nextCommand>a;)this.commandList.remove(0),this.nextCommand--;this.nextCommand>a&&(this.nextCommand=a-1);this.cursorPos=this.nextCommand;
this.maxSize=a}},"~N");c(c$,"getCommandUp",function(){if(0>=this.cursorPos)return null;this.cursorPos--;var a=this.getCommand();a.endsWith("#??")&&this.removeCommand(this.cursorPos--);0>this.cursorPos&&(this.cursorPos=0);return a});c(c$,"getCommandDown",function(){if(this.cursorPos>=this.nextCommand)return null;this.cursorPos++;return this.getCommand()});c(c$,"getCommand",function(){return this.commandList.get(this.cursorPos)});c(c$,"addCommand",function(a){if((this.isOn||a.endsWith("#??"))&&!a.endsWith("#----")){for(var b;0<=
(b=a.indexOf("\n"));){var d=a.substring(0,b);0<d.length&&this.addCommandLine(d);a=a.substring(b+1)}0<a.length&&this.addCommandLine(a)}},"~S");c(c$,"getSetHistory",function(a){this.isOn=-2==a?this.isOn:!0;switch(a){case 0:return this.isOn=!1,this.clear(),"";case -2147483648:case -2:return this.clear(),"";case -1:return this.getCommandUp();case 1:return this.getCommandDown();default:if(0>a)return this.setMaxSize(-2-a),"";a=Math.max(this.nextCommand-a,0)}for(var b="";a<this.nextCommand;a++)this.commandList.get(a).toUpperCase().startsWith("WRITE HISTORY")||
(b+=this.commandList.get(a)+"\n");return b},"~N");c(c$,"find",function(a,b){for(var d=this.cursorPos,c=a;null!=c;){c=this.getSetHistory(b);if(null==c)break;if(c.startsWith(a))return c}this.cursorPos=d;return null},"~S,~N");c(c$,"removeCommand",function(){return this.removeCommand(this.nextCommand-1)});c(c$,"removeCommand",function(a){if(0>a||a>=this.nextCommand)return"";a=this.commandList.remove(a);this.nextCommand--;return a},"~N");c(c$,"addCommandLine",function(a){if(!(null==a||0==a.length)&&!a.endsWith("#--"))this.nextCommand>=
this.maxSize&&(this.commandList.remove(0),this.nextCommand=this.maxSize-1),this.commandList.add(this.nextCommand,a),this.nextCommand++,this.cursorPos=this.nextCommand,this.commandList.add(this.nextCommand,"")},"~S");C(c$,"ERROR_FLAG","#??","NOHISTORYLINE_FLAG","#--","NOHISTORYATALL_FLAG","#----","DEFAULT_MAX_SIZE",100)}),u("JU"),v(["JU.LoggerInterface"],"JU.DefaultLogger",["JU.Logger"],function(){c$=A(JU,"DefaultLogger",null,JU.LoggerInterface);c(c$,"log",function(a,b,d,c){a===System.err&&System.out.flush();
if(null!=a&&(null!=d||null!=c))if(a.println((JU.Logger.logLevel()?"["+JU.Logger.getLevel(b)+"] ":"")+(null!=d?d:"")+(null!=c?": "+c.toString():"")),null!=c&&(b=c.getStackTrace(),null!=b))for(d=0;d<b.length;d++)a.println(b[d].getClassName()+" - "+b[d].getLineNumber()+" - "+b[d].getMethodName());a===System.err&&System.err.flush()},"java.io.PrintStream,~N,~S,Throwable");j(c$,"debug",function(a){this.log(System.out,5,a,null)},"~S");j(c$,"info",function(a){this.log(System.out,4,a,null)},"~S");j(c$,"warn",
function(a){this.log(System.out,3,a,null)},"~S");j(c$,"warnEx",function(a,b){this.log(System.out,3,a,b)},"~S,Throwable");j(c$,"error",function(a){this.log(System.err,2,a,null)},"~S");j(c$,"errorEx",function(a,b){this.log(System.err,2,a,b)},"~S,Throwable");j(c$,"fatal",function(a){this.log(System.err,1,a,null)},"~S");j(c$,"fatalEx",function(a,b){this.log(System.err,1,a,b)},"~S,Throwable")}),u("JU"),v(["JU.BS"],"JU.Elements",["java.util.Hashtable","JU.PT","JU.Logger"],function(){c$=A(JU,"Elements");
c$.getAtomicMass=c(c$,"getAtomicMass",function(a){return 1>a||a>=JU.Elements.atomicMass.length?0:JU.Elements.atomicMass[a]},"~N");c$.elementNumberFromSymbol=c(c$,"elementNumberFromSymbol",function(a,d){if(null==JU.Elements.htElementMap){for(var c=new java.util.Hashtable,g=JU.Elements.elementNumberMax;0<=--g;){var e=JU.Elements.elementSymbols[g],h=Integer.$valueOf(g);c.put(e,h);2==e.length&&c.put(e.toUpperCase(),h)}for(g=JU.Elements.altElementMax;4<=--g;)e=JU.Elements.altElementSymbols[g],h=Integer.$valueOf(JU.Elements.altElementNumbers[g]),
c.put(e,h),2==e.length&&c.put(e.toUpperCase(),h);JU.Elements.htElementMap=c}if(null==a)return 0;c=JU.Elements.htElementMap.get(a);if(null!=c)return c.intValue();if(JU.PT.isDigit(a.charAt(0))&&(e=a.length-2,0<=e&&JU.PT.isDigit(a.charAt(e))&&e++,c=0<e?JU.PT.parseInt(a.substring(0,e)):0,0<c&&(e=JU.Elements.elementNumberFromSymbol(a.substring(e),!0),0<e)))return c=JU.Elements.getAtomicAndIsotopeNumber(e,c),JU.Elements.htElementMap.put(a.toUpperCase(),Integer.$valueOf(c)),c;d||JU.Logger.error("'"+a+"' is not a recognized symbol");
return 0},"~S,~B");c$.elementSymbolFromNumber=c(c$,"elementSymbolFromNumber",function(a){var d=0;if(a>=JU.Elements.elementNumberMax){for(d=JU.Elements.altElementMax;0<=--d;)if(a==JU.Elements.altElementNumbers[d])return JU.Elements.altElementSymbols[d];d=JU.Elements.getIsotopeNumber(a);return""+d+JU.Elements.getElementSymbol(a%128)}return JU.Elements.getElementSymbol(a)},"~N");c$.getElementSymbol=c(c$,"getElementSymbol",function(a){if(0>a||a>=JU.Elements.elementNumberMax)a=0;return JU.Elements.elementSymbols[a]},
"~N");c$.elementNameFromNumber=c(c$,"elementNameFromNumber",function(a){if(a>=JU.Elements.elementNumberMax){for(var d=JU.Elements.altElementMax;0<=--d;)if(a==JU.Elements.altElementNumbers[d])return JU.Elements.altElementNames[d];a%=128}if(0>a||a>=JU.Elements.elementNumberMax)a=0;return JU.Elements.elementNames[a]},"~N");c$.elementNumberFromName=c(c$,"elementNumberFromName",function(a){for(var d=1;d<JU.Elements.elementNumberMax;d++)if(JU.Elements.elementNames[d].equalsIgnoreCase(a))return d;return-1},
"~S");c$.altElementNameFromIndex=c(c$,"altElementNameFromIndex",function(a){return JU.Elements.altElementNames[a]},"~N");c$.altElementNumberFromIndex=c(c$,"altElementNumberFromIndex",function(a){return JU.Elements.altElementNumbers[a]},"~N");c$.altElementSymbolFromIndex=c(c$,"altElementSymbolFromIndex",function(a){return JU.Elements.altElementSymbols[a]},"~N");c$.altIsotopeSymbolFromIndex=c(c$,"altIsotopeSymbolFromIndex",function(a){a=JU.Elements.altElementNumbers[a];return(a>>7)+JU.Elements.elementSymbolFromNumber(a&
127)},"~N");c$.altIsotopeSymbolFromIndex2=c(c$,"altIsotopeSymbolFromIndex2",function(a){a=JU.Elements.altElementNumbers[a];return JU.Elements.elementSymbolFromNumber(a&127)+(a>>7)},"~N");c$.getElementNumber=c(c$,"getElementNumber",function(a){return a&127},"~N");c$.getIsotopeNumber=c(c$,"getIsotopeNumber",function(a){return a>>7},"~N");c$.getAtomicAndIsotopeNumber=c(c$,"getAtomicAndIsotopeNumber",function(a,d){return(0>a?0:a)+(0>=d?0:d<<7)},"~N,~N");c$.altElementIndexFromNumber=c(c$,"altElementIndexFromNumber",
function(a){for(var d=0;d<JU.Elements.altElementMax;d++)if(JU.Elements.altElementNumbers[d]==a)return d;return 0},"~N");c$.getNaturalIsotope=c(c$,"getNaturalIsotope",function(a){for(var d=0;d<JU.Elements.naturalIsotopeMasses.length;d+=2)if(JU.Elements.naturalIsotopeMasses[d]==a)return JU.Elements.naturalIsotopeMasses[++d];return 0},"~N");c$.isNaturalIsotope=c(c$,"isNaturalIsotope",function(a){return 0<="1H,12C,14N,".indexOf(a+",")},"~S");c$.getBondingRadius=c(c$,"getBondingRadius",function(a,d){var c=
a&127;return 0<d&&JU.Elements.bsCations.get(c)?JU.Elements.getBondingRadFromTable(c,d,JU.Elements.cationLookupTable):0>d&&JU.Elements.bsAnions.get(c)?JU.Elements.getBondingRadFromTable(c,d,JU.Elements.anionLookupTable):JU.Elements.defaultBondingMars[(c<<1)+JU.Elements.bondingVersion]/1E3},"~N,~N");c$.getCovalentRadius=c(c$,"getCovalentRadius",function(a){return JU.Elements.defaultBondingMars[((a&127)<<1)+JU.Elements.covalentVersion]/1E3},"~N");c$.getBondingRadFromTable=c(c$,"getBondingRadFromTable",
function(a,d,c){d=(a<<4)+(d+4);for(var g=0,e=0,h=0,j=x(c.length/2);h!=j;)if(e=x((h+j)/2),g=c[e<<1],g>d)j=e;else if(g<d)h=e+1;else return c[(e<<1)+1]/1E3;g>d&&e--;g=c[e<<1];a!=g>>4&&e++;return c[(e<<1)+1]/1E3},"~N,~N,~A");c$.getVanderwaalsMar=c(c$,"getVanderwaalsMar",function(a,d){return JU.Elements.vanderwaalsMars[((a&127)<<2)+d.pt%4]},"~N,J.c.VDW");c$.getHydrophobicity=c(c$,"getHydrophobicity",function(a){return 1>a||a>=JU.Elements.hydrophobicities.length?0:JU.Elements.hydrophobicities[a]},"~N");
c$.getAllredRochowElectroNeg=c(c$,"getAllredRochowElectroNeg",function(a){return 0<a&&a<JU.Elements.electroNegativities.length?JU.Elements.electroNegativities[a]:0},"~N");c$.isElement=c(c$,"isElement",function(a,d){return(a&127)==d},"~N,~N");C(c$,"elementSymbols","Xx H He Li Be B C N O F Ne Na Mg Al Si P S Cl Ar K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr Rb Sr Y Zr Nb Mo Tc Ru Rh Pd Ag Cd In Sn Sb Te I Xe Cs Ba La Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu Hf Ta W Re Os Ir Pt Au Hg Tl Pb Bi Po At Rn Fr Ra Ac Th Pa U Np Pu Am Cm Bk Cf Es Fm Md No Lr Rf Db Sg Bh Hs Mt".split(" "),
"atomicMass",[0,1.008,4.003,6.941,9.012,10.81,12.011,14.007,15.999,18.998,20.18,22.99,24.305,26.981,28.086,30.974,32.07,35.453,39.948,39.1,40.08,44.956,47.88,50.941,52,54.938,55.847,58.93,58.69,63.55,65.39,69.72,72.61,74.92,78.96,79.9,83.8,85.47,87.62,88.91,91.22,92.91,95.94,98.91,101.07,102.91,106.42,107.87,112.41,114.82,118.71,121.75,127.6,126.91,131.29,132.91,137.33,138.91,140.12,140.91,144.24,144.9,150.36,151.96,157.25,158.93,162.5,164.93,167.26,168.93,173.04,174.97,178.49,180.95,183.85,186.21,
190.2,192.22,195.08,196.97,200.59,204.38,207.2,208.98,210,210,222,223,226.03,227.03,232.04,231.04,238.03,237.05,239.1,243.1,247.1,247.1,252.1,252.1,257.1,256.1,259.1,260.1,261,262,263,262,265,268]);c$.elementNumberMax=c$.prototype.elementNumberMax=JU.Elements.elementSymbols.length;C(c$,"htElementMap",null,"elementNames","unknown hydrogen helium lithium beryllium boron carbon nitrogen oxygen fluorine neon sodium magnesium aluminum silicon phosphorus sulfur chlorine argon potassium calcium scandium titanium vanadium chromium manganese iron cobalt nickel copper zinc gallium germanium arsenic selenium bromine krypton rubidium strontium yttrium zirconium niobium molybdenum technetium ruthenium rhodium palladium silver cadmium indium tin antimony tellurium iodine xenon cesium barium lanthanum cerium praseodymium neodymium promethium samarium europium gadolinium terbium dysprosium holmium erbium thulium ytterbium lutetium hafnium tantalum tungsten rhenium osmium iridium platinum gold mercury thallium lead bismuth polonium astatine radon francium radium actinium thorium protactinium uranium neptunium plutonium americium curium berkelium californium einsteinium fermium mendelevium nobelium lawrencium rutherfordium dubnium seaborgium bohrium hassium meitnerium".split(" "),
"naturalIsotopeMasses",[1,1,6,12,7,14,8,16],"naturalIsotopes","1H,12C,14N,","firstIsotope",4,"altElementNumbers",[0,13,16,55,257,385,1414,1670,1798,1927]);c$.altElementMax=c$.prototype.altElementMax=JU.Elements.altElementNumbers.length;C(c$,"altElementSymbols","Xx Al S Cs D T 11C 13C 14C 15N".split(" "),"altElementNames","dummy aluminium sulphur caesium deuterium tritium    ".split(" "),"VdwPROBE","#VDW radii for PROBE;{_H}.vdw = 1.0;{_H and connected(_C) and not connected(within(smiles,'[a]'))}.vdw = 1.17;{_C}.vdw = 1.75;{_C and connected(3) and connected(_O)}.vdw = 1.65;{_N}.vdw = 1.55;{_O}.vdw = 1.4;{_P}.vdw = 1.8;{_S}.vdw = 1.8;message VDW radii for H, C, N, O, P, and S set according to Word, et al., J. Mol. Biol. (1999) 285, 1711-1733",
"vanderwaalsMars",[1E3,1E3,1E3,1E3,1200,1100,1100,1200,1400,1400,2200,1400,1820,1810,1220,2200,1700,1530,628,1900,2080,1920,1548,1800,1950,1700,1548,1700,1850,1550,1400,1600,1700,1520,1348,1550,1730,1470,1300,1500,1540,1540,2020,1540,2270,2270,2200,2400,1730,1730,1500,2200,2050,1840,1500,2100,2100,2100,2200,2100,2080,1800,1880,1950,2E3,1800,1808,1800,1970,1750,1748,1800,1880,1880,2768,1880,2750,2750,2388,2800,1973,2310,1948,2400,1700,2300,1320,2300,1700,2150,1948,2150,1700,2050,1060,2050,1700,2050,
1128,2050,1700,2050,1188,2050,1700,2050,1948,2050,1700,2E3,1128,2E3,1630,2E3,1240,2E3,1400,2E3,1148,2E3,1390,2100,1148,2100,1870,1870,1548,2100,1700,2110,3996,2100,1850,1850,828,2050,1900,1900,900,1900,2100,1830,1748,1900,2020,2020,1900,2020,1700,3030,2648,2900,1700,2490,2020,2550,1700,2400,1608,2400,1700,2300,1420,2300,1700,2150,1328,2150,1700,2100,1748,2100,1700,2050,1800,2050,1700,2050,1200,2050,1700,2E3,1220,2E3,1630,2050,1440,2050,1720,2100,1548,2100,1580,2200,1748,2200,1930,2200,1448,2200,2170,
1930,1668,2250,2200,2170,1120,2200,2060,2060,1260,2100,2150,1980,1748,2100,2160,2160,2100,2160,1700,3430,3008,3E3,1700,2680,2408,2700,1700,2500,1828,2500,1700,2480,1860,2480,1700,2470,1620,2470,1700,2450,1788,2450,1700,2430,1760,2430,1700,2420,1740,2420,1700,2400,1960,2400,1700,2380,1688,2380,1700,2370,1660,2370,1700,2350,1628,2350,1700,2330,1608,2330,1700,2320,1588,2320,1700,2300,1568,2300,1700,2280,1540,2280,1700,2270,1528,2270,1700,2250,1400,2250,1700,2200,1220,2200,1700,2100,1260,2100,1700,2050,
1300,2050,1700,2E3,1580,2E3,1700,2E3,1220,2E3,1720,2050,1548,2050,1660,2100,1448,2100,1550,2050,1980,2050,1960,1960,1708,2200,2020,2020,2160,2300,1700,2070,1728,2300,1700,1970,1208,2E3,1700,2020,1120,2E3,1700,2200,2300,2E3,1700,3480,3240,2E3,1700,2830,2568,2E3,1700,2E3,2120,2E3,1700,2400,1840,2400,1700,2E3,1600,2E3,1860,2300,1748,2300,1700,2E3,1708,2E3,1700,2E3,1668,2E3,1700,2E3,1660,2E3,1700,2E3,1648,2E3,1700,2E3,1640,2E3,1700,2E3,1628,2E3,1700,2E3,1620,2E3,1700,2E3,1608,2E3,1700,2E3,1600,2E3,1700,
2E3,1588,2E3,1700,2E3,1580,2E3,1700,2E3,1600,2E3,1700,2E3,1600,2E3,1700,2E3,1600,2E3,1700,2E3,1600,2E3,1700,2E3,1600,2E3,1700,2E3,1600,2E3],"RAD_COV_IONIC_OB1_100_1",0,"RAD_COV_BODR_2014_02_22",1,"covalentVersion",1,"bondingVersion",0,"defaultBondingMars",[0,0,230,320,930,460,680,1330,350,1020,830,850,680,750,680,710,680,630,640,640,1120,670,970,1550,1100,1390,1350,1260,1200,1160,750,1110,1020,1030,990,990,1570,960,1330,1960,990,1710,1440,1480,1470,1360,1330,1340,1350,1220,1350,1190,1340,1160,1330,
1110,1500,1100,1520,1120,1450,1180,1220,1240,1170,1210,1210,1210,1220,1160,1210,1140,1910,1170,1470,2100,1120,1850,1780,1630,1560,1540,1480,1470,1470,1380,1350,1280,1400,1250,1450,1250,1500,1200,1590,1280,1690,1360,1630,1420,1460,1400,1460,1400,1470,1360,1400,1330,1980,1310,1670,2320,1340,1960,1870,1800,1830,1630,1820,1760,1810,1740,1800,1730,1800,1720,1990,1680,1790,1690,1760,1680,1750,1670,1740,1660,1730,1650,1720,1640,1940,1700,1720,1620,1570,1520,1430,1460,1370,1370,1350,1310,1370,1290,1320,1220,
1500,1230,1500,1240,1700,1330,1550,1440,1540,1440,1540,1510,1680,1450,1700,1470,2400,1420,2E3,2230,1900,2010,1880,1860,1790,1750,1610,1690,1580,1700,1550,1710,1530,1720,1510,1660,1500,1660,1500,1680,1500,1680,1500,1650,1500,1670,1500,1730,1500,1760,1500,1610,1600,1570,1600,1490,1600,1430,1600,1410,1600,1340,1600,1290],"FORMAL_CHARGE_MIN",-4,"FORMAL_CHARGE_MAX",7,"cationLookupTable",[53,680,69,440,70,350,85,350,87,230,104,160,117,680,119,160,121,130,133,220,138,90,155,80,165,1120,181,970,197,820,198,
660,215,510,229,650,232,420,247,440,249,350,262,2190,264,370,266,300,281,340,283,270,293,1540,309,1330,325,1180,326,990,343,732,357,960,358,940,359,760,360,680,374,880,375,740,376,630,377,590,389,810,390,890,391,630,394,520,406,800,407,660,408,600,411,460,422,740,423,640,438,720,439,630,454,690,469,960,470,720,485,880,486,740,501,810,503,620,518,730,520,530,535,580,537,460,549,660,552,500,554,420,569,470,571,390,597,1470,614,1120,631,893,645,1090,648,790,661,1E3,664,740,665,690,677,930,680,700,682,
620,699,979,712,670,727,680,742,800,744,650,757,1260,758,890,773,1140,774,970,791,810,806,930,808,710,823,760,825,620,837,820,840,700,842,560,857,620,859,500,885,1670,901,1530,902,1340,917,1390,919,1016,933,1270,935,1034,936,920,951,1013,952,900,967,995,983,979,999,964,1014,1090,1015,950,1031,938,1047,923,1048,840,1063,908,1079,894,1095,881,1111,870,1126,930,1127,858,1143,850,1160,780,1177,680,1192,700,1194,620,1208,720,1211,560,1224,880,1226,690,1240,680,1254,800,1256,650,1269,1370,1271,850,1285,
1270,1286,1100,1301,1470,1303,950,1318,1200,1320,840,1333,980,1335,960,1337,740,1354,670,1371,620,1397,1800,1414,1430,1431,1180,1448,1020,1463,1130,1464,980,1465,890,1480,970,1482,800,1495,1100,1496,950,1499,710,1511,1080,1512,930,1527,1070,1528,920],"anionLookupTable",[19,1540,96,2600,113,1710,130,1360,131,680,147,1330,241,2120,258,1840,275,1810,512,2720,529,2220,546,1980,563,1960,800,2940,803,3700,817,2450,834,2110,835,2500,851,2200]);c$.bsCations=c$.prototype.bsCations=new JU.BS;c$.bsAnions=c$.prototype.bsAnions=
new JU.BS;for(var a=0;a<JU.Elements.anionLookupTable.length;a+=2)JU.Elements.bsAnions.set(JU.Elements.anionLookupTable[a]>>4);for(a=0;a<JU.Elements.cationLookupTable.length;a+=2)JU.Elements.bsCations.set(JU.Elements.cationLookupTable[a]>>4);C(c$,"hydrophobicities",[0,0.62,-2.53,-0.78,-0.9,0.29,-0.85,-0.74,0.48,-0.4,1.38,1.06,-1.5,0.64,1.19,0.12,-0.18,-0.05,0.81,0.26,1.08]);(JU.Elements.elementNames.length!=JU.Elements.elementNumberMax||JU.Elements.vanderwaalsMars.length>>2!=JU.Elements.elementNumberMax||
JU.Elements.defaultBondingMars.length>>1!=JU.Elements.elementNumberMax)&&JU.Logger.error("ERROR!!! Element table length mismatch:\n elementSymbols.length="+JU.Elements.elementSymbols.length+"\n elementNames.length="+JU.Elements.elementNames.length+"\n vanderwaalsMars.length="+JU.Elements.vanderwaalsMars.length+"\n covalentMars.length="+JU.Elements.defaultBondingMars.length);C(c$,"electroNegativities",[0,2.2,0,0.97,1.47,2.01,2.5,3.07,3.5,4.1,0,1.01,1.23,1.47,1.74,2.06,2.44,2.83,0,0.91,1.04,1.2,1.32,
1.45,1.56,1.6,1.64,1.7,1.75,1.75,1.66,1.82,2.02,2.2,2.48,2.74,0,0.89,0.99,1.11,1.22,1.23,1.3,1.36,1.42,1.45,1.35,1.42,1.46,1.49,1.72,1.82,2.01,2.21])}),u("JU"),v(null,"JU.Escape","java.lang.Float java.util.Map JU.A4 $.BS $.Lst $.M3 $.M34 $.M4 $.P3 $.P4 $.PT $.Quat $.SB $.T3 $.V3 JS.SV".split(" "),function(){c$=A(JU,"Escape");c$.escapeColor=c(c$,"escapeColor",function(a){return 0==a?null:"[x"+JU.Escape.getHexColorFromRGB(a)+"]"},"~N");c$.getHexColorFromRGB=c(c$,"getHexColorFromRGB",function(a){if(0==
a)return null;var b="00"+Integer.toHexString(a>>16&255),b=b.substring(b.length-2),d="00"+Integer.toHexString(a>>8&255),d=d.substring(d.length-2);a="00"+Integer.toHexString(a&255);a=a.substring(a.length-2);return b+d+a},"~N");c$.eP=c(c$,"eP",function(a){return null==a?"null":"{"+a.x+" "+a.y+" "+a.z+"}"},"JU.T3");c$.matrixToScript=c(c$,"matrixToScript",function(a){return JU.PT.replaceAllCharacters(a.toString(),"\n\r ","").$replace("\t"," ")},"~O");c$.eP4=c(c$,"eP4",function(a){return"{"+a.x+" "+a.y+
" "+a.z+" "+a.w+"}"},"JU.P4");c$.drawQuat=c(c$,"drawQuat",function(a,b,d,c,g){c=" VECTOR "+JU.Escape.eP(c)+" ";0==g&&(g=1);return"draw "+b+"x"+d+c+JU.Escape.eP(a.getVectorScaled(0,g))+" color red\ndraw "+b+"y"+d+c+JU.Escape.eP(a.getVectorScaled(1,g))+" color green\ndraw "+b+"z"+d+c+JU.Escape.eP(a.getVectorScaled(2,g))+" color blue\n"},"JU.Quat,~S,~S,JU.P3,~N");c$.e=c(c$,"e",function(a){if(null==a)return"null";if(JU.PT.isNonStringPrimitive(a))return a.toString();if(q(a,String))return JU.PT.esc(a);
if(q(a,JU.Lst))return JU.Escape.eV(a);if(q(a,java.util.Map))return JU.Escape.escapeMap(a);if(q(a,JU.BS))return JU.Escape.eBS(a);if(q(a,JU.T3))return JU.Escape.eP(a);if(q(a,JU.P4))return JU.Escape.eP4(a);if(JU.PT.isAS(a))return JU.Escape.eAS(a,!0);if(q(a,JU.M34))return JU.PT.rep(a.toString(),"\t",",\t");if(q(a,JU.A4))return"{"+a.x+" "+a.y+" "+a.z+" "+180*a.angle/3.141592653589793+"}";if(q(a,JU.Quat))return a.toString();var b=JU.PT.nonArrayString(a);return null==b?JU.PT.toJSON(null,a):b},"~O");c$.eV=
c(c$,"eV",function(a){if(null==a)return JU.PT.esc("");var b=new JU.SB;b.append("[");for(var d=0;d<a.size();d++)0<d&&b.append(", "),b.append(JU.Escape.escapeNice(a.get(d).asString()));b.append("]");return b.toString()},"JU.Lst");c$.escapeMap=c(c$,"escapeMap",function(a){var b=new JU.SB;b.append("{ ");var d="",c;for(a=a.entrySet().iterator();a.hasNext()&&((c=a.next())||1);){var g=c.getKey();b.append(d).append(JU.PT.esc(g)).appendC(":");d=c.getValue();q(d,JS.SV)||(d=JS.SV.getVariable(d));b.append(d.escape());
d=","}b.append(" }");return b.toString()},"java.util.Map");c$.escapeFloatA=c(c$,"escapeFloatA",function(a,b){if(b)return JU.PT.toJSON(null,a);for(var d=new JU.SB,c=0;c<a.length;c++)0<c&&d.appendC("\n"),d.appendF(a[c]);return d.toString()},"~A,~B");c$.escapeFloatAA=c(c$,"escapeFloatAA",function(a,b){for(var d=new JU.SB,c=b?";\n":"\n",g=0;g<a.length;g++)if(null!=a[g]){0<g&&d.append(c);for(var e=0;e<a[g].length;e++)d.appendF(a[g][e]).appendC("\t")}return d.toString()},"~A,~B");c$.escapeFloatAAA=c(c$,
"escapeFloatAAA",function(a,b){var d=new JU.SB,c=b?";\n":"\n";if(null==a[0]||null==a[0][0])return"0 0 0"+c;d.appendI(a.length).append(" ").appendI(a[0].length).append(" ").appendI(a[0][0].length);for(var g=0;g<a.length;g++)if(null!=a[g]){d.append(c);for(var e=0;e<a[g].length;e++)if(null!=a[g][e]){d.append(c);for(var h=0;h<a[g][e].length;h++)d.appendF(a[g][e][h]).appendC("\t")}}return d.toString()},"~A,~B");c$.eAS=c(c$,"eAS",function(a,b){if(null==a)return JU.PT.esc("");var d=new JU.SB;d.append("[");
for(var c=0;c<a.length;c++)0<c&&d.append(", "),d.append(b?JU.Escape.escapeNice(a[c]):JU.PT.esc(a[c]));d.append("]");return d.toString()},"~A,~B");c$.eAI=c(c$,"eAI",function(a){if(null==a)return JU.PT.esc("");var b=new JU.SB;b.append("[");for(var d=0;d<a.length;d++)0<d&&b.append(", "),b.appendI(a[d]);return b.append("]").toString()},"~A");c$.eAD=c(c$,"eAD",function(a){if(null==a)return JU.PT.esc("");var b=new JU.SB;b.append("[");for(var d=0;d<a.length;d++)0<d&&b.append(", "),b.appendD(a[d]);return b.append("]").toString()},
"~A");c$.eAF=c(c$,"eAF",function(a){if(null==a)return JU.PT.esc("");var b=new JU.SB;b.append("[");for(var d=0;d<a.length;d++)0<d&&b.append(", "),b.appendF(a[d]);return b.append("]").toString()},"~A");c$.eAP=c(c$,"eAP",function(a){if(null==a)return JU.PT.esc("");var b=new JU.SB;b.append("[");for(var d=0;d<a.length;d++)0<d&&b.append(", "),b.append(JU.Escape.eP(a[d]));return b.append("]").toString()},"~A");c$.escapeNice=c(c$,"escapeNice",function(a){if(null==a)return"null";var b=JU.PT.parseFloatStrict(a);
return Float.isNaN(b)?JU.PT.esc(a):a},"~S");c$.uABsM=c(c$,"uABsM",function(a){return"{"==a.charAt(0)?JU.Escape.uP(a):(JU.Escape.isStringArray(a)||a.startsWith("[{")&&a.indexOf("[{")==a.lastIndexOf("[{"))&&0>a.indexOf(",")&&0>a.indexOf(".")&&0>a.indexOf("-")?JU.BS.unescape(a):a.startsWith("[[")?JU.Escape.unescapeMatrix(a):a},"~S");c$.isStringArray=c(c$,"isStringArray",function(a){return a.startsWith("({")&&0==a.lastIndexOf("({")&&a.indexOf("})")==a.length-2},"~S");c$.uP=c(c$,"uP",function(a){if(null==
a||0==a.length)return a;var b=a.$replace("\n"," ").trim();if("{"!=b.charAt(0)||"}"!=b.charAt(b.length-1))return a;for(var d=M(5,0),c=0,b=b.substring(1,b.length-1),g=E(1,0);5>c;c++)if(d[c]=JU.PT.parseFloatNext(b,g),Float.isNaN(d[c])){if(g[0]>=b.length||","!=b.charAt(g[0]))break;g[0]++;c--}return 3==c?JU.P3.new3(d[0],d[1],d[2]):4==c?JU.P4.new4(d[0],d[1],d[2],d[3]):a},"~S");c$.unescapeMatrix=c(c$,"unescapeMatrix",function(a){if(null==a||0==a.length)return a;var b=a.$replace("\n"," ").trim();if(0!=b.lastIndexOf("[[")||
b.indexOf("]]")!=b.length-2)return a;for(var d=M(16,0),b=b.substring(2,b.length-2).$replace("["," ").$replace("]"," ").$replace(","," "),c=E(1,0),g=0;16>g&&!(d[g]=JU.PT.parseFloatNext(b,c),Float.isNaN(d[g]));g++);return!Float.isNaN(JU.PT.parseFloatNext(b,c))?a:9==g?JU.M3.newA9(d):16==g?JU.M4.newA16(d):a},"~S");c$.eBS=c(c$,"eBS",function(a){return JU.BS.escape(a,"(",")")},"JU.BS");c$.eBond=c(c$,"eBond",function(a){return JU.BS.escape(a,"[","]")},"JU.BS");c$.toReadable=c(c$,"toReadable",function(a,
b){var d=new JU.SB,c="";if(null==b)return"null";if(JU.PT.isNonStringPrimitive(b))return JU.Escape.packageReadable(a,null,b.toString());if(q(b,String))return JU.Escape.packageReadable(a,null,JU.PT.esc(b));if(q(b,JS.SV))return JU.Escape.packageReadable(a,null,b.escape());if(JU.PT.isAS(b)){d.append("[");for(var g=b.length,e=0;e<g;e++)d.append(c).append(JU.PT.esc(b[e])),c=",";d.append("]");return JU.Escape.packageReadableSb(a,"String["+g+"]",d)}if(JU.PT.isAI(b)){d.append("[");g=b.length;for(e=0;e<g;e++)d.append(c).appendI(b[e]),
c=",";d.append("]");return JU.Escape.packageReadableSb(a,"int["+g+"]",d)}if(JU.PT.isAF(b)){d.append("[");g=b.length;for(e=0;e<g;e++)d.append(c).appendF(b[e]),c=",";d.append("]");return JU.Escape.packageReadableSb(a,"float["+g+"]",d)}if(JU.PT.isAD(b)){d.append("[");g=b.length;for(e=0;e<g;e++)d.append(c).appendD(b[e]),c=",";d.append("]");return JU.Escape.packageReadableSb(a,"double["+g+"]",d)}if(JU.PT.isAP(b)){d.append("[");g=b.length;for(e=0;e<g;e++)d.append(c).append(JU.Escape.eP(b[e])),c=",";d.append("]");
return JU.Escape.packageReadableSb(a,"point3f["+g+"]",d)}if(JU.PT.isASS(b)){d.append("[");g=b.length;for(e=0;e<g;e++)d.append(c).append(JU.Escape.toReadable(null,b[e])),c=",\n";d.append("]");return JU.Escape.packageReadableSb(a,"String["+g+"][]",d)}if(JU.PT.isAII(b)){d.append("[");g=b.length;for(e=0;e<g;e++)d.append(c).append(JU.Escape.toReadable(null,b[e])),c=",";d.append("]");return JU.Escape.packageReadableSb(a,"int["+g+"][]",d)}if(JU.PT.isAFF(b)){d.append("[\n");g=b.length;for(e=0;e<g;e++)d.append(c).append(JU.Escape.toReadable(null,
b[e])),c=",\n";d.append("]");return JU.Escape.packageReadableSb(a,"float[][]",d)}if(JU.PT.isADD(b)){d.append("[\n");g=b.length;for(e=0;e<g;e++)d.append(c).append(JU.Escape.toReadable(null,b[e])),c=",\n";d.append("]");return JU.Escape.packageReadableSb(a,"double[][]",d)}if(q(b,JU.Lst)){g=b.size();for(e=0;e<g;e++)d.append(JU.Escape.toReadable(a+"["+(e+1)+"]",b.get(e)));return JU.Escape.packageReadableSb(a,"List["+g+"]",d)}if(q(b,JU.M34)||q(b,JU.T3)||q(b,JU.P4)||q(b,JU.A4))return d.append(JU.Escape.e(b)),
JU.Escape.packageReadableSb(a,null,d);if(q(b,java.util.Map)){for(c=b.keySet().iterator();c.hasNext();)g=c.next(),d.append(JU.Escape.toReadable((null==a?"":a+".")+g,b.get(g)));return d.toString()}return JU.Escape.packageReadable(a,null,JU.PT.toJSON(null,b))},"~S,~O");c$.packageReadableSb=c(c$,"packageReadableSb",function(a,b,d){return JU.Escape.packageReadable(a,b,d.toString())},"~S,~S,JU.SB");c$.packageReadable=c(c$,"packageReadable",function(a,b,d){return null==a?(null==b?"":b+"\t")+d:"\n"+a+"\t"+
(null==b?"":"*"+b+"\t")+d},"~S,~S,~S");c$.escapeModelFileNumber=c(c$,"escapeModelFileNumber",function(a){return""+x(a/1E6)+"."+a%1E6},"~N");c$.encapsulateData=c(c$,"encapsulateData",function(a,b,d){return'  DATA "'+a+'"\n'+(2==d?JU.Escape.escapeFloatAA(b,!0)+";\n":3==d?JU.Escape.escapeFloatAAA(b,!0)+";\n":b)+'    END "'+a+'";\n'},"~S,~O,~N");c$.unescapeUnicode=c(c$,"unescapeUnicode",function(a){for(var b=a.length,d=JU.SB.newN(b),c=0;c<b;){var g=a.charAt(c++);if("\\"==g&&c<b)switch(g=a.charAt(c++),
g){case "u":if(c<b){for(var g=0,e=4;0<=--e&&c<b;){var h=a.charAt(c),h=JU.Escape.getHexitValue(h);if(0>h)break;g<<=4;g+=h;++c}g=String.fromCharCode(g)}}d.appendC(g)}return d.toString()},"~S");c$.getHexitValue=c(c$,"getHexitValue",function(a){return 48<=a.charCodeAt(0)&&57>=a.charCodeAt(0)?a.charCodeAt(0)-48:97<=a.charCodeAt(0)&&102>=a.charCodeAt(0)?10+a.charCodeAt(0)-97:65<=a.charCodeAt(0)&&70>=a.charCodeAt(0)?10+a.charCodeAt(0)-65:-1},"~S");c$.unescapeStringArray=c(c$,"unescapeStringArray",function(a){if(null==
a||!a.startsWith("[")||!a.endsWith("]"))return null;var b=new JU.Lst,d=E(1,0);for(d[0]=1;d[0]<a.length;){var c=JU.PT.getQuotedStringNext(a,d);if(null==c)return null;for(b.addLast(JU.PT.rep(c,'\\"','"'));d[0]<a.length&&'"'!=a.charAt(d[0]);)d[0]++}return b.toArray(Array(b.size()))},"~S");c$.isAV=c(c$,"isAV",function(a){return q(a[0],JS.SV)},"~O");c$.escapeHelical=c(c$,"escapeHelical",function(a,b,d,c,g){switch(b){case 135266320:return null==g?new JU.P3:g[0];case 1073741854:case 1666189314:return null==
g?new JU.V3:g[1073741854==b?1:2];case 135266305:return Float.$valueOf(null==g?NaN:g[3].x);case 135176:return null==g?"":'draw ID "'+a+'" VECTOR '+JU.Escape.eP(g[0])+" "+JU.Escape.eP(g[1])+" color "+(0>g[3].x?"{255.0 200.0 0.0}":"{255.0 0.0 128.0}");case 1746538509:return(null==g?"":"measure "+JU.Escape.eP(d)+JU.Escape.eP(g[0])+JU.Escape.eP(g[4]))+JU.Escape.eP(c);default:return null==g?[]:g}},"~S,~N,JU.P3,JU.P3,~A")}),u("JU"),v(["J.api.JmolGraphicsInterface","JU.Normix"],"JU.GData","javajs.awt.Font JU.AU $.P3 $.V3 JU.C $.Shader".split(" "),
function(){c$=s(function(){this.apiPlatform=null;this.antialiasEnabled=this.currentlyRendering=this.translucentCoverOnly=!1;this.displayMaxY=this.displayMinY=this.displayMaxX=this.displayMinX=this.windowHeight=this.windowWidth=0;this.inGreyscaleMode=this.antialiasThisFrame=!1;this.backgroundImage=this.changeableColixMap=null;this.newWindowHeight=this.newWindowWidth=0;this.newAntialiasing=!1;this.zDepth=this.zSlab=this.height=this.width=this.depth=this.slab=this.yLast=this.xLast=this.bgcolor=0;this.zShadePower=
3;this.ht3=this.argbCurrent=this.colixCurrent=this.ambientOcclusion=0;this.isPass2=!1;this.bufferSize=this.textY=0;this.vwr=this.shader=null;this.zShadeB=this.zShadeG=this.zShadeR=0;this.graphicsForMetrics=null;this.argbNoisyDn=this.argbNoisyUp=0;this.currentFont=this.transformedVectors=null;p(this,arguments)},JU,"GData",null,J.api.JmolGraphicsInterface);N(c$,function(){this.changeableColixMap=W(16,0);this.transformedVectors=Array(JU.GData.normixCount)});t(c$,function(){this.shader=new JU.Shader});
c(c$,"initialize",function(a,b){this.vwr=a;this.apiPlatform=b},"JV.Viewer,javajs.api.GenericPlatform");j(c$,"setDepth",function(a){this.depth=0>a?0:a},"~N");j(c$,"setSlab",function(a){this.slab=Math.max(0,a)},"~N");c(c$,"setZShade",function(a,b,d,c){a&&this.setZShade2(b,d,c)},"~B,~N,~N,~N");c(c$,"setZShade2",function(a,b,d){this.zShadeR=this.bgcolor&255;this.zShadeG=(this.bgcolor&65280)>>8;this.zShadeB=(this.bgcolor&16711680)>>16;this.zSlab=0>a?0:a;this.zDepth=0>b?0:b;this.zShadePower=d},"~N,~N,~N");
c(c$,"setAmbientOcclusion",function(a){this.ambientOcclusion=a},"~N");j(c$,"isAntialiased",function(){return this.antialiasThisFrame});c(c$,"getChangeableColix",function(a,b){a>=this.changeableColixMap.length&&(this.changeableColixMap=JU.AU.arrayCopyShort(this.changeableColixMap,a+16));0==this.changeableColixMap[a]&&(this.changeableColixMap[a]=JU.C.getColix(b));return a|-32768},"~N,~N");c(c$,"changeColixArgb",function(a,b){a<this.changeableColixMap.length&&0!=this.changeableColixMap[a]&&(this.changeableColixMap[a]=
JU.C.getColix(b))},"~N,~N");c(c$,"getColorArgbOrGray",function(a){0>a&&(a=this.changeableColixMap[a&2047]);return this.inGreyscaleMode?JU.C.getArgbGreyscale(a):JU.C.getArgb(a)},"~N");c(c$,"getShades",function(a){0>a&&(a=this.changeableColixMap[a&2047]);return this.inGreyscaleMode?this.shader.getShadesG(a):this.shader.getShades(a)},"~N");c(c$,"setGreyscaleMode",function(a){this.inGreyscaleMode=a},"~B");c(c$,"getSpecularPower",function(){return this.shader.specularPower});c(c$,"setSpecularPower",function(a){0>
a?this.setSpecularExponent(-a):this.shader.specularPower!=a&&(this.shader.specularPower=a,this.shader.intenseFraction=a/100,this.shader.flushCaches())},"~N");c(c$,"getSpecularPercent",function(){return this.shader.specularPercent});c(c$,"setSpecularPercent",function(a){this.shader.specularPercent!=a&&(this.shader.specularPercent=a,this.shader.specularFactor=a/100,this.shader.flushCaches())},"~N");c(c$,"getSpecularExponent",function(){return this.shader.specularExponent});c(c$,"setSpecularExponent",
function(a){this.shader.specularExponent!=a&&(this.shader.specularExponent=a,this.shader.phongExponent=x(Math.pow(2,a)),this.shader.usePhongExponent=!1,this.shader.flushCaches())},"~N");c(c$,"getPhongExponent",function(){return this.shader.phongExponent});c(c$,"setPhongExponent",function(a){this.shader.phongExponent==a&&this.shader.usePhongExponent||(this.shader.phongExponent=a,a=Math.log(a)/Math.log(2),this.shader.usePhongExponent=a!=z(a),this.shader.usePhongExponent||(this.shader.specularExponent=
z(a)),this.shader.flushCaches())},"~N");c(c$,"getDiffusePercent",function(){return this.shader.diffusePercent});c(c$,"setDiffusePercent",function(a){this.shader.diffusePercent!=a&&(this.shader.diffusePercent=a,this.shader.diffuseFactor=a/100,this.shader.flushCaches())},"~N");c(c$,"getAmbientPercent",function(){return this.shader.ambientPercent});c(c$,"setAmbientPercent",function(a){this.shader.ambientPercent!=a&&(this.shader.ambientPercent=a,this.shader.ambientFraction=a/100,this.shader.flushCaches())},
"~N");c(c$,"getSpecular",function(){return this.shader.specularOn});c(c$,"setSpecular",function(a){this.shader.specularOn!=a&&(this.shader.specularOn=a,this.shader.flushCaches())},"~B");c(c$,"setCel",function(a){this.shader.setCel(a,this.shader.celPower,this.bgcolor)},"~B");c(c$,"getCel",function(){return this.shader.celOn});c(c$,"getCelPower",function(){return this.shader.celPower});c(c$,"setCelPower",function(a){this.shader.setCel(this.shader.celOn||0==this.shader.celPower,a,this.bgcolor)},"~N");
c(c$,"getLightSource",function(){return this.shader.lightSource});c(c$,"isClipped3",function(a,b,d){return 0>a||a>=this.width||0>b||b>=this.height||d<this.slab||d>this.depth},"~N,~N,~N");c(c$,"isClipped",function(a,b){return 0>a||a>=this.width||0>b||b>=this.height},"~N,~N");j(c$,"isInDisplayRange",function(a,b){return a>=this.displayMinX&&a<this.displayMaxX&&b>=this.displayMinY&&b<this.displayMaxY},"~N,~N");j(c$,"isClippedXY",function(a,b,d){a=a+1>>1;return b<-a||b>=this.width+a||d<-a||d>=this.height+
a},"~N,~N,~N");c(c$,"isClippedZ",function(a){return-2147483648!=a&&(a<this.slab||a>this.depth)},"~N");c(c$,"clipCode3",function(a,b,d){var c=0;0>a?c|=8:a>=this.width&&(c|=4);0>b?c|=2:b>=this.height&&(c|=1);d<this.slab?c|=32:d>this.depth&&(c|=16);return c},"~N,~N,~N");c(c$,"clipCode",function(a){var b=0;a<this.slab?b|=32:a>this.depth&&(b|=16);return b},"~N");c(c$,"getFont3D",function(a){return javajs.awt.Font.createFont3D(0,0,a,a,this.apiPlatform,this.graphicsForMetrics)},"~N");c(c$,"getFont3DFS",
function(a,b){return javajs.awt.Font.createFont3D(javajs.awt.Font.getFontFaceID(a),0,b,b,this.apiPlatform,this.graphicsForMetrics)},"~S,~N");c(c$,"getFontFidFS",function(a,b){return this.getFont3DFSS(a,"Bold",b).fid},"~S,~N");c(c$,"getFont3DFSS",function(a,b,d){b=javajs.awt.Font.getFontStyleID(b);0>b&&(b=0);return javajs.awt.Font.createFont3D(javajs.awt.Font.getFontFaceID(a),b,d,d,this.apiPlatform,this.graphicsForMetrics)},"~S,~S,~N");c(c$,"getFont3DScaled",function(a,b){var d=a.fontSizeNominal*b;
return d==a.fontSize?a:javajs.awt.Font.createFont3D(a.idFontFace,a.idFontStyle,d,a.fontSizeNominal,this.apiPlatform,this.graphicsForMetrics)},"javajs.awt.Font,~N");c(c$,"getFontFid",function(a){return this.getFont3D(a).fid},"~N");c(c$,"setBackgroundTransparent",function(){},"~B");c(c$,"setBackgroundArgb",function(a){this.bgcolor=a;this.setCel(this.shader.celOn)},"~N");c(c$,"setBackgroundImage",function(a){this.backgroundImage=a},"~O");c(c$,"setWindowParameters",function(a,b,d){this.setWinParams(a,
b,d)},"~N,~N,~B");c(c$,"setWinParams",function(a,b,d){this.newWindowWidth=a;this.newWindowHeight=b;this.newAntialiasing=d},"~N,~N,~B");c(c$,"setNewWindowParametersForExport",function(){this.windowWidth=this.newWindowWidth;this.windowHeight=this.newWindowHeight;this.setWidthHeight(!1)});c(c$,"setWidthHeight",function(a){this.width=this.windowWidth;this.height=this.windowHeight;a&&(this.width<<=1,this.height<<=1);this.xLast=this.width-1;this.yLast=this.height-1;this.displayMinX=-(this.width>>1);this.displayMaxX=
this.width-this.displayMinX;this.displayMinY=-(this.height>>1);this.displayMaxY=this.height-this.displayMinY;this.ht3=3*this.height;this.bufferSize=this.width*this.height},"~B");c(c$,"beginRendering",function(){},"JU.M3,~B,~B,~B");c(c$,"endRendering",function(){});c(c$,"snapshotAnaglyphChannelBytes",function(){});c(c$,"getScreenImage",function(){return null},"~B");c(c$,"releaseScreenImage",function(){});c(c$,"applyAnaglygh",function(){},"J.c.STER,~A");c(c$,"setPass2",function(){return!1},"~B");c(c$,
"destroy",function(){});c(c$,"clearFontCache",function(){});c(c$,"plotImage",function(){},"~N,~N,~N,~O,J.api.JmolRendererInterface,~N,~N,~N");c(c$,"plotText",function(){},"~N,~N,~N,~N,~N,~S,javajs.awt.Font,J.api.JmolRendererInterface");c(c$,"renderBackground",function(){},"J.api.JmolRendererInterface");c(c$,"setFont",function(){},"javajs.awt.Font");c(c$,"setFontFid",function(){},"~N");c(c$,"setColor",function(a){this.argbCurrent=this.argbNoisyUp=this.argbNoisyDn=a},"~N");c(c$,"setC",function(){return!0},
"~N");c(c$,"isDirectedTowardsCamera",function(a){return 0>a||0<this.transformedVectors[a].z},"~N");c$.roundInt=c(c$,"roundInt",function(a){return a},"~N");c(c$,"clear",function(){});j(c$,"renderAllStrings",function(){},"~O");c(c$,"addRenderer",function(){},"~N");c$.getHermiteList=c(c$,"getHermiteList",function(a,b,d,c,g,e,h,j,k,n){var m=k+1;k-=1;var r=d.x,p=d.y,q=d.z,s=c.x,t=c.y;c=c.z;var u=(s-b.x)*a/8,v=(t-b.y)*a/8;b=(c-b.z)*a/8;var x=(g.x-r)*a/8,z=(g.y-p)*a/8,A=(g.z-q)*a/8,B=(e.x-s)*a/8,D=(e.y-
t)*a/8;a=(e.z-c)*a/8;h[j]=d;for(d=0;d<m;d++){var C=d/k;d==m-1&&(r=s,p=t,q=c,s=g.x,t=g.y,c=g.z,u=x,v=z,b=A,x=B,z=D,A=a,C-=1);var E=C*C,H=E*C;e=2*H-3*E+1;var I=-2*H+3*E,C=H-2*E+C,K=H-E,E=e*r+I*s+C*u+K*x,H=e*p+I*t+C*v+K*z;e=e*q+I*c+C*b+K*A;h[j+d]=n?JU.P3.new3(E,H,e):JU.V3.new3(E,H,e)}},"~N,JU.T3,JU.T3,JU.T3,JU.T3,JU.T3,~A,~N,~N,~B");c(c$,"setTextPosition",function(a){this.textY=a},"~N");c(c$,"getTextPosition",function(){return this.textY});c(c$,"getTransformedVertexVectors",function(){return this.transformedVectors});
c(c$,"getFont3DCurrent",function(){return this.currentFont});C(c$,"ENDCAPS_NONE",0,"ENDCAPS_OPEN",1,"ENDCAPS_FLAT",2,"ENDCAPS_SPHERICAL",3,"ENDCAPS_OPENEND",4,"EXPORT_RAYTRACER",2,"EXPORT_CARTESIAN",1,"EXPORT_NOT",0,"yGT",1,"yLT",2,"xGT",4,"xLT",8,"zGT",16,"zLT",32);c$.normixCount=c$.prototype.normixCount=JU.Normix.getNormixCount()}),u("JU"),v(["J.api.JmolAppletInterface","$.JmolStatusListener"],"JU.GenericApplet","java.lang.Boolean java.net.URL java.util.Hashtable javajs.awt.Dimension JU.Lst $.PT $.SB J.c.CBK J.i18n.GT JU.Logger JV.JC $.Viewer".split(" "),
function(){c$=s(function(){this.isJS=!1;this.documentBase=this.codeBase=null;this.isSigned=!1;this.language=null;this.doTranslate=!0;this.mayScript=this.isStereoSlave=this.haveDocumentAccess=!1;this.vwrOptions=this.b$=this.viewer=this.gRight=this.statusTextarea=this.statusText=this.statusForm=this.fullName=this.htmlName=null;this.haveNotifiedError=!1;this.appletObject=null;this.loading=this.isJNLP=!1;this.outputBuffer=this.syncId=null;p(this,arguments)},JU,"GenericApplet",null,[J.api.JmolAppletInterface,
J.api.JmolStatusListener]);c(c$,"init",function(a){this.b$=new java.util.Hashtable;null==JU.GenericApplet.htRegistry&&(JU.GenericApplet.htRegistry=new java.util.Hashtable);this.appletObject=a;this.htmlName=JU.PT.split(""+this.getJmolParameter("name"),"_object")[0];this.syncId=this.getJmolParameter("syncId");this.fullName=this.htmlName+"__"+this.syncId+"__";System.out.println("Jmol JavaScript applet "+this.fullName+" initializing");a=this.getValue("logLevel",this.getBooleanValue("debug",!1)?"5":"4").charCodeAt(0)-
48;4!=a&&System.out.println("setting logLevel="+a+' -- To change, use script "set logLevel [0-5]"');JU.Logger.setLogLevel(a);J.i18n.GT.ignoreApplicationBundle();this.initOptions();JU.GenericApplet.checkIn(this.fullName,this.appletObject);this.initApplication()},"~O");c(c$,"initApplication",function(){this.vwrOptions.put("applet",Boolean.TRUE);null==this.getJmolParameter("statusListener")&&this.vwrOptions.put("statusListener",this);this.viewer=new JV.Viewer(this.vwrOptions);this.viewer.pushHoldRepaint();
var a=this.getValueLowerCase("emulate","jmol");this.setStringProperty("defaults",a.equals("chime")?"RasMol":"Jmol");this.setStringProperty("backgroundColor",this.getValue("bgcolor",this.getValue("boxbgcolor","black")));this.viewer.setBooleanProperty("frank",!0);this.loading=!0;for(var b,a=0,d=J.c.CBK.values();a<d.length&&((b=d[a])||1);a++)this.setValue(b.name()+"Callback",null);this.loading=!1;this.language=this.getJmolParameter("language");new J.i18n.GT(this.viewer,this.language);null!=this.language&&
System.out.print("requested language="+this.language+"; ");this.doTranslate=!"none".equals(this.language)&&this.getBooleanValue("doTranslate",!0);this.language=J.i18n.GT.getLanguage();System.out.println("language="+this.language);if(null==this.b$.get(J.c.CBK.SCRIPT)&&null==this.b$.get(J.c.CBK.ERROR)&&(null!=this.b$.get(J.c.CBK.MESSAGE)||null!=this.statusForm||null!=this.statusText))this.doTranslate&&null==this.getValue("doTranslate",null)&&(this.doTranslate=!1,JU.Logger.warn("Note -- Presence of message callback disables disable translation; to enable message translation use jmolSetTranslation(true) prior to jmolApplet()")),
this.doTranslate&&JU.Logger.warn("Note -- Automatic language translation may affect parsing of message callbacks messages; use scriptCallback or errorCallback to process errors");this.doTranslate||(J.i18n.GT.setDoTranslate(!1),JU.Logger.warn("Note -- language translation disabled"));this.getBooleanValue("popupMenu",!0)||this.viewer.getProperty("DATA_API","disablePopupMenu",null);b=this.getJmolParameter("menuFile");null!=b&&this.viewer.setMenu(b,!0);b=this.getValue("script","");a=this.getValue("loadInline",
null);if(null==a){if(null!=(a=this.getValue("load",null)))b='load "'+a+'";'+b;a=null}this.viewer.popHoldRepaint("applet init");null!=a&&null!=this.viewer.loadInline(a)&&(b="");0<b.length&&this.scriptProcessor(b,null,1);this.viewer.notifyStatusReady(!0)});j(c$,"destroy",function(){this.gRight=null;this.viewer.notifyStatusReady(!1);this.viewer=null;JU.GenericApplet.checkOut(this.fullName)});c(c$,"getBooleanValue",function(a,b){var d=this.getValue(a,b?"true":"");return d.equalsIgnoreCase("true")||d.equalsIgnoreCase("on")||
d.equalsIgnoreCase("yes")},"~S,~B");c(c$,"getValue",function(a,b){var d=this.getJmolParameter(a);System.out.println("Jmol getValue "+a+" "+d);return null==d?b:d},"~S,~S");c(c$,"getValueLowerCase",function(a,b){var d=this.getValue(a,b);null!=d&&(d=d.trim().toLowerCase(),0==d.length&&(d=null));return d},"~S,~S");c(c$,"setValue",function(a,b){this.setStringProperty(a,this.getValue(a,b))},"~S,~S");c(c$,"setStringProperty",function(a,b){null!=b&&(JU.Logger.info(a+' = "'+b+'"'),this.viewer.setStringProperty(a,
b))},"~S,~S");c(c$,"scriptProcessor",function(a,b,d){if(null==a||0==a.length)return"";switch(d){case 0:return a=this.viewer.scriptCheck(a),q(a,String)?a:"";case 1:return null!=b?this.viewer.scriptWaitStatus(a,b).toString():this.viewer.scriptWait(a);default:return this.viewer.script(a)}},"~S,~S,~N");j(c$,"register",function(a,b){JU.GenericApplet.checkIn(a,b)},"~S,J.api.JmolSyncInterface");j(c$,"getJSpecViewProperty",function(){return null},"~S");c(c$,"syncScript",function(a){this.viewer.syncScript(a,
"~",0)},"~S");j(c$,"handleEvent",function(a){return null==this.viewer?!1:this.viewer.processMouseEvent(a.id,a.x,a.y,a.modifiers,a.when)},"java.awt.Event");j(c$,"getAppletInfo",function(){return J.i18n.GT.o(J.i18n.GT._("Jmol Applet version {0} {1}.\n\nAn OpenScience project.\n\nSee http://www.jmol.org for more information"),[JV.JC.version,JV.JC.date])+"\nhtmlName = "+JU.PT.esc(this.htmlName)+"\nsyncId = "+JU.PT.esc(this.syncId)+"\ndocumentBase = "+JU.PT.esc(this.documentBase)+"\ncodeBase = "+JU.PT.esc(this.codeBase)});
j(c$,"script",function(a){this.scriptNoWait(a)},"~S");j(c$,"scriptCheck",function(a){return null==a||0==a.length?"":this.scriptProcessor(a,null,0)},"~S");j(c$,"scriptNoWait",function(a){return null==a||0==a.length?"":this.scriptProcessor(a,null,2)},"~S");c(c$,"scriptWait",function(a){return this.scriptWait(a,null)},"~S");c(c$,"scriptWait",function(a,b){if(null==a||0==a.length)return"";this.outputBuffer=null;return this.scriptProcessor(a,b,1)},"~S,~S");j(c$,"scriptWaitOutput",function(a){if(null==
a||0==a.length)return"";this.outputBuffer=new JU.SB;this.viewer.scriptWaitStatus(a,"");a=null==this.outputBuffer?"":this.outputBuffer.toString();this.outputBuffer=null;return a},"~S");j(c$,"getModelIndexFromId",function(a){return this.viewer.getModelIndexFromId(a)},"~S");j(c$,"getProperty",function(a,b){b||(b="");return this.viewer.getProperty(null,a,b)},"~S,~S");j(c$,"getPropertyAsString",function(a,b){b||(b="");return this.viewer.getProperty("readable",a,b).toString()},"~S,~S");j(c$,"getPropertyAsJSON",
function(a,b){b||(b="");return this.viewer.getProperty("JSON",a,b).toString()},"~S,~S");j(c$,"loadInlineString",function(a,b,d){a=this.viewer.loadInlineAppend(a,d);null==a&&this.script(b);return a},"~S,~S,~B");j(c$,"loadInlineArray",function(a,b,d){if(null==a||0==a.length)return null;a=this.viewer.loadInline(a,d);null==a&&this.script(b);return a},"~A,~S,~B");j(c$,"loadDOMNode",function(a){return this.viewer.openDOM(a)},"~O");c(c$,"loadInline",function(a){return this.loadInlineString(a,"",!1)},"~S");
c(c$,"loadInline",function(a,b){return this.loadInlineString(a,b,!1)},"~S,~S");c(c$,"loadInline",function(a){return this.loadInlineArray(a,"",!1)},"~A");c(c$,"loadInline",function(a,b){return this.loadInlineArray(a,b,!1)},"~A,~S");c(c$,"output",function(a){null!=this.outputBuffer&&null!=a&&this.outputBuffer.append(a).appendC("\n")},"~S");j(c$,"setCallbackFunction",function(a,b){if(!a.equalsIgnoreCase("modelkit"))if(a.equalsIgnoreCase("language"))this.consoleMessage(""),this.consoleMessage(null);else{var d=
J.c.CBK.getCallback(a);null!=d&&(this.loading||d!==J.c.CBK.EVAL)?null==b?this.b$.remove(d):this.b$.put(d,b):this.consoleMessage("Available callbacks include: "+J.c.CBK.getNameList().$replace(";"," ").trim())}},"~S,~S");c(c$,"consoleMessage",function(a){this.notifyCallback(J.c.CBK.ECHO,["",a])},"~S");j(c$,"notifyEnabled",function(a){switch(a){case J.c.CBK.ECHO:case J.c.CBK.MESSAGE:case J.c.CBK.MEASURE:case J.c.CBK.PICK:case J.c.CBK.SYNC:return!0;case J.c.CBK.ANIMFRAME:case J.c.CBK.DRAGDROP:case J.c.CBK.ERROR:case J.c.CBK.EVAL:case J.c.CBK.LOADSTRUCT:case J.c.CBK.SCRIPT:return!this.isJNLP}return null!=
this.b$.get(a)},"J.c.CBK");c(c$,"notifyCallback",function(a,b){var d=this.b$.get(a),c=null!=d&&(null==b||null==b[0]),g=!1;null!=b&&(b[0]=this.htmlName);var e=null==b||null==b[1]?null:b[1].toString();switch(a){case J.c.CBK.APPLETREADY:b[3]=this.appletObject;break;case J.c.CBK.CLICK:"alert".equals(d)&&(e="x="+b[1]+" y="+b[2]+" action="+b[3]+" clickCount="+b[4]);break;case J.c.CBK.ANIMFRAME:var h=b[1],j=h[0],k=h[1],n=h[2],m=h[3],h=h[4],r=-2>=j,p=0>m?-1:1,q=0>h?-1:1;c&&(b=[this.htmlName,Integer.$valueOf(Math.max(j,
-2-j)),Integer.$valueOf(k),Integer.$valueOf(n),Integer.$valueOf(Math.abs(m)),Integer.$valueOf(Math.abs(h)),Integer.$valueOf(r?1:0),Integer.$valueOf(p),Integer.$valueOf(q),b[2],b[3]]);break;case J.c.CBK.ECHO:k=(j=2==b.length)||1==b[2].intValue();c||(k&&(g=!0),c=!j&&null!=(d=this.b$.get(a=J.c.CBK.MESSAGE)));g||this.output(e);break;case J.c.CBK.LOADSTRUCT:j=b[4];if(null!=j){j=(0<=j.indexOf("NOTE:")?"":J.i18n.GT._("File Error:"))+j;this.doShowStatus(j);this.notifyCallback(J.c.CBK.MESSAGE,["",j]);return}break;
case J.c.CBK.MEASURE:c||(c=null!=(d=this.b$.get(a=J.c.CBK.MESSAGE)));j=b[3];0<=j.indexOf("Picked")||0<=j.indexOf("Sequence")?(this.doShowStatus(e),g=!0):0<=j.indexOf("Completed")&&(e=j+": "+e,g=!0);break;case J.c.CBK.MESSAGE:g=!c;c=(new Boolean(c&null!=e)).valueOf();g||this.output(e);break;case J.c.CBK.PICK:this.doShowStatus(e);g=!0;break;case J.c.CBK.SCRIPT:!(0<b[3].intValue())&&!c&&(c=null!=(d=this.b$.get(a=J.c.CBK.MESSAGE)));this.output(e);this.doShowStatus(e);break;case J.c.CBK.SYNC:this.sendScript(e,
b[2],!0,c);return}g&&(g=this.viewer.getProperty("DATA_API","getAppConsole",null),null!=g&&(g.notifyCallback(a,b),this.output(e),this.doSendJsTextareaStatus(e)));if(c&&this.mayScript)try{this.doSendCallback(d,b,e)}catch(s){if(B(s,Exception))this.haveNotifiedError||JU.Logger.debugging&&JU.Logger.debug(a.name()+"Callback call error to "+d+": "+s),this.haveNotifiedError=!0;else throw s;}},"J.c.CBK,~A");c(c$,"sendScript",function(a,b,d,c){if(c&&(a=this.notifySync(a,b),null==a||0==a.length||a.equals("0")))return"";
var g=new JU.Lst;JU.GenericApplet.findApplets(b,this.syncId,this.fullName,g);var e=g.size();if(0==e)return!c&&!b.equals("*")&&JU.Logger.error(this.fullName+" couldn't find applet "+b),"";b=d?null:new JU.SB;c=d&&a.equals("GET_GRAPHICS");var h=d&&a.equals("SET_GRAPHICS_OFF");c&&this.viewer.setStereo(!1,this.gRight=null);for(var j=0;j<e;j++){var k=g.get(j),n=JU.GenericApplet.htRegistry.get(k);JU.Logger.debugging&&JU.Logger.debug(this.fullName+" sending to "+k+": "+a);try{if(c||h)return this.viewer.setStereo(this.isStereoSlave=
c,this.gRight=n.setStereoGraphics(c)),"";d?n.syncScript(a):b.append(n.scriptWait(a,"output")).append("\n")}catch(m){if(B(m,Exception))k=this.htmlName+" couldn't send to "+k+": "+a+": "+m,JU.Logger.error(k),d||b.append(k);else throw m;}}return d?"":b.toString()},"~S,~S,~B,~B");c(c$,"notifySync",function(a,b){var d=this.b$.get(J.c.CBK.SYNC);if(!this.mayScript||null==d)return a;try{return this.doSendCallback(d,[this.fullName,a,b],null)}catch(c){if(B(c,Exception))this.haveNotifiedError||JU.Logger.debugging&&
JU.Logger.debug("syncCallback call error to "+d+": "+c),this.haveNotifiedError=!0;else throw c;}return a},"~S,~S");j(c$,"eval",function(a){var b=a.indexOf("\u0001");return 0<=b?this.sendScript(a.substring(b+1),a.substring(0,b),!1,!1):!this.haveDocumentAccess?"NO EVAL ALLOWED":null!=this.b$.get(J.c.CBK.EVAL)?(this.notifyCallback(J.c.CBK.EVAL,[null,a]),""):this.doEval(a)},"~S");j(c$,"functionXY",function(a,b,d){return this.doFunctionXY(a,b,d)},"~S,~N,~N");j(c$,"functionXYZ",function(a,b,d,c){return this.doFunctionXYZ(a,
b,d,c)},"~S,~N,~N,~N");j(c$,"createImage",function(){return null},"~S,~S,~O,~N");j(c$,"getRegistryInfo",function(){JU.GenericApplet.checkIn(null,null);return JU.GenericApplet.htRegistry});j(c$,"showUrl",function(a){JU.Logger.debugging&&JU.Logger.debug("showUrl("+a+")");if(null!=a&&0<a.length)try{this.doShowDocument(new java.net.URL(Z("java.net.URL"),a,null))}catch(b){if(B(b,java.net.MalformedURLException))this.consoleMessage("Malformed URL:"+a);else throw b;}},"~S");j(c$,"resizeInnerPanel",function(){return new javajs.awt.Dimension(0,
0)},"~S");c$.checkIn=c(c$,"checkIn",function(a,b){null!=a&&(JU.Logger.info("AppletRegistry.checkIn("+a+")"),JU.GenericApplet.htRegistry.put(a,b));if(JU.Logger.debugging)for(var d,c=JU.GenericApplet.htRegistry.entrySet().iterator();c.hasNext()&&((d=c.next())||1);){var g=d.getKey();JU.Logger.debug(g+" "+d.getValue())}},"~S,~O");c$.checkOut=c(c$,"checkOut",function(a){JU.GenericApplet.htRegistry.remove(a)},"~S");c$.findApplets=c(c$,"findApplets",function(a,b,d,c){if(null!=a&&0<=a.indexOf(",")){var g=
JU.PT.split(a,",");for(a=0;a<g.length;a++)JU.GenericApplet.findApplets(g[a],b,d,c)}else if(b="__"+b+"__",null==a||a.equals("*")||a.equals(">"))for(a=JU.GenericApplet.htRegistry.keySet().iterator();a.hasNext()&&((g=a.next())||1);)!g.equals(d)&&0<g.indexOf(b)&&c.addLast(g);else 0<=d.indexOf("_object")&&0>a.indexOf("_object")&&(a+="_object"),0>a.indexOf("__")&&(a+=b),JU.GenericApplet.htRegistry.containsKey(a)||(a="jmolApplet"+a),!a.equals(d)&&JU.GenericApplet.htRegistry.containsKey(a)&&c.addLast(a)},
"~S,~S,~S,JU.Lst");C(c$,"htRegistry",null,"SCRIPT_CHECK",0,"SCRIPT_WAIT",1,"SCRIPT_NOWAIT",2)}),u("JU"),v(["JU.AU"],"JU.Geodesic",["java.lang.NullPointerException","$.Short","java.util.Hashtable","JU.V3"],function(){c$=A(JU,"Geodesic");c$.getNeighborVertexesArrays=c(c$,"getNeighborVertexesArrays",function(){null==JU.Geodesic.vertexCounts&&JU.Geodesic.createGeodesic(3);return JU.Geodesic.neighborVertexesArrays});c$.getVertexCount=c(c$,"getVertexCount",function(a){null==JU.Geodesic.vertexCounts&&JU.Geodesic.createGeodesic(3);
return JU.Geodesic.vertexCounts[a]},"~N");c$.getVertexVectors=c(c$,"getVertexVectors",function(){null==JU.Geodesic.vertexCounts&&JU.Geodesic.createGeodesic(3);return JU.Geodesic.vertexVectors});c$.getVertexVector=c(c$,"getVertexVector",function(a){return JU.Geodesic.vertexVectors[a]},"~N");c$.getFaceVertexes=c(c$,"getFaceVertexes",function(a){return JU.Geodesic.faceVertexesArrays[a]},"~N");c$.createGeodesic=c(c$,"createGeodesic",function(a){if(!(a<JU.Geodesic.currentLevel)){JU.Geodesic.currentLevel=
a;var b=W(a+1,0);JU.Geodesic.neighborVertexesArrays=JU.AU.newShort2(a+1);JU.Geodesic.faceVertexesArrays=JU.AU.newShort2(a+1);JU.Geodesic.vertexVectors=Array(12);JU.Geodesic.vertexVectors[0]=JU.V3.new3(0,0,JU.Geodesic.halfRoot5);for(var d=0;5>d;++d)JU.Geodesic.vertexVectors[d+1]=JU.V3.new3(Math.cos(1.2566371*d),Math.sin(1.2566371*d),0.5),JU.Geodesic.vertexVectors[d+6]=JU.V3.new3(Math.cos(1.2566371*d+0.62831855),Math.sin(1.2566371*d+0.62831855),-0.5);JU.Geodesic.vertexVectors[11]=JU.V3.new3(0,0,-JU.Geodesic.halfRoot5);
for(d=12;0<=--d;)JU.Geodesic.vertexVectors[d].normalize();JU.Geodesic.faceVertexesArrays[0]=JU.Geodesic.faceVertexesIcosahedron;JU.Geodesic.neighborVertexesArrays[0]=JU.Geodesic.neighborVertexesIcosahedron;b[0]=12;for(d=0;d<a;++d)JU.Geodesic.quadruple(d,b);JU.Geodesic.vertexCounts=b}},"~N");c$.quadruple=c(c$,"quadruple",function(a,b){JU.Geodesic.htVertex=new java.util.Hashtable;var d=JU.Geodesic.vertexVectors.length,c=JU.Geodesic.faceVertexesArrays[a],g=c.length,e=x(g/3),h=d+(d+e-2),e=4*e;JU.Geodesic.vertexVectors=
JU.AU.arrayCopyObject(JU.Geodesic.vertexVectors,h);e=W(3*e,0);JU.Geodesic.faceVertexesArrays[a+1]=e;var j=W(6*h,0);JU.Geodesic.neighborVertexesArrays[a+1]=j;for(var k=j.length;0<=--k;)j[k]=-1;b[a+1]=h;JU.Geodesic.vertexNext=d;for(k=d=0;k<g;){var n=c[k++],m=c[k++],r=c[k++],p=JU.Geodesic.getVertex(n,m),q=JU.Geodesic.getVertex(m,r),s=JU.Geodesic.getVertex(r,n);e[d++]=n;e[d++]=p;e[d++]=s;e[d++]=m;e[d++]=q;e[d++]=p;e[d++]=r;e[d++]=s;e[d++]=q;e[d++]=s;e[d++]=p;e[d++]=q;JU.Geodesic.addNeighboringVertexes(j,
p,n);JU.Geodesic.addNeighboringVertexes(j,p,s);JU.Geodesic.addNeighboringVertexes(j,p,q);JU.Geodesic.addNeighboringVertexes(j,p,m);JU.Geodesic.addNeighboringVertexes(j,q,m);JU.Geodesic.addNeighboringVertexes(j,q,s);JU.Geodesic.addNeighboringVertexes(j,q,r);JU.Geodesic.addNeighboringVertexes(j,s,r);JU.Geodesic.addNeighboringVertexes(j,s,n)}g=JU.Geodesic.vertexVectors.length;if(d!=e.length)throw new NullPointerException;if(JU.Geodesic.vertexNext!=h)throw new NullPointerException;for(k=0;12>k;++k)for(c=
0;5>c;++c){d=j[6*k+c];if(0>d)throw new NullPointerException;if(d>=g)throw new NullPointerException;if(-1!=j[6*k+5])throw new NullPointerException;}for(k=72;k<j.length;++k){d=j[k];if(0>d)throw new NullPointerException;if(d>=g)throw new NullPointerException;}for(k=0;k<h;++k){g=0;for(c=j.length;0<=--c;)j[c]==k&&++g;if(12>k&&5!=g||12<=k&&6!=g)throw new NullPointerException;g=0;for(c=e.length;0<=--c;)e[c]==k&&++g;if(12>k&&5!=g||12<=k&&6!=g)throw new NullPointerException;}JU.Geodesic.htVertex=null},"~N,~A");
c$.addNeighboringVertexes=c(c$,"addNeighboringVertexes",function(a,b,d){for(var c=6*b,g=c+6;c<g;++c){if(a[c]==d)return;if(0>a[c]){a[c]=d;for(var e=6*d,h=e+6;e<h;++e){if(a[e]==b)return;if(0>a[e]){a[e]=b;return}}}}throw new NullPointerException;},"~A,~N,~N");c$.getVertex=c(c$,"getVertex",function(a,b){if(a>b){var d=a;a=b;b=d}var d=Integer.$valueOf((a<<16)+b),c=JU.Geodesic.htVertex.get(d);if(null!=c)return c.shortValue();c=JU.Geodesic.vertexVectors[JU.Geodesic.vertexNext]=new JU.V3;c.add2(JU.Geodesic.vertexVectors[a],
JU.Geodesic.vertexVectors[b]);c.normalize();JU.Geodesic.htVertex.put(d,Short.$valueOf(JU.Geodesic.vertexNext));return JU.Geodesic.vertexNext++},"~N,~N");c$.halfRoot5=c$.prototype.halfRoot5=0.5*Math.sqrt(5);C(c$,"oneFifth",1.2566371,"oneTenth",0.62831855,"faceVertexesIcosahedron",[0,1,2,0,2,3,0,3,4,0,4,5,0,5,1,1,6,2,2,7,3,3,8,4,4,9,5,5,10,1,6,1,10,7,2,6,8,3,7,9,4,8,10,5,9,11,6,10,11,7,6,11,8,7,11,9,8,11,10,9],"neighborVertexesIcosahedron",[1,2,3,4,5,-1,0,5,10,6,2,-1,0,1,6,7,3,-1,0,2,7,8,4,-1,0,3,8,
9,5,-1,0,4,9,10,1,-1,1,10,11,7,2,-1,2,6,11,8,3,-1,3,7,11,9,4,-1,4,8,11,10,5,-1,5,9,11,6,1,-1,6,7,8,9,10,-1],"standardLevel",3,"maxLevel",3,"vertexCounts",null,"vertexVectors",null,"faceVertexesArrays",null,"neighborVertexesArrays",null,"currentLevel",0,"vertexNext",0,"htVertex",null,"VALIDATE",!0)}),u("JU"),c$=s(function(){this.entryCount=0;this.entries=null;p(this,arguments)},JU,"Int2IntHash"),t(c$,function(a){this.entries=Array(a)},"~N"),c(c$,"get",function(a){for(var b=this.entries,b=b[(a&2147483647)%
b.length];null!=b;b=b.next)if(b.key==a)return b.value;return-2147483648},"~N"),c(c$,"put",function(a,b){for(var d=this.entries,c=d.length,g=(a&2147483647)%c,e=d[g];null!=e;e=e.next)if(e.key==a){e.value=b;return}if(this.entryCount>c){for(var g=c,c=c+(c+1),h=Array(c),j=g;0<=--j;)for(e=d[j];null!=e;){var k=e,e=e.next,g=(k.key&2147483647)%c;k.next=h[g];h[g]=k}d=this.entries=h;g=(a&2147483647)%c}d[g]=new JU.Int2IntHashEntry(a,b,d[g]);++this.entryCount},"~N,~N"),c$=s(function(){this.value=this.key=0;this.next=
null;p(this,arguments)},JU,"Int2IntHashEntry"),t(c$,function(a,b,d){this.key=a;this.value=b;this.next=d},"~N,~N,JU.Int2IntHashEntry"),u("JU"),H(JU,"Node"),u("JU"),v(["JU.Node"],"JU.BNode",null,function(){H(JU,"BNode",JU.Node)}),u("JU"),v(["java.lang.Enum"],"JU.Edge",null,function(){c$=s(function(){this.index=-1;this.order=0;p(this,arguments)},JU,"Edge");c$.getArgbHbondType=c(c$,"getArgbHbondType",function(a){return JU.Edge.argbsHbondType[(a&30720)>>11]},"~N");c$.getBondOrderNumberFromOrder=c(c$,"getBondOrderNumberFromOrder",
function(a){a&=-131073;return 131071==a||65535==a?"0":JM.Bond.isOrderH(a)||0!=(a&256)?JU.Edge.EnumBondOrder.SINGLE.number:0!=(a&224)?(a>>5)+"."+(a&31):JU.Edge.EnumBondOrder.getNumberFromCode(a)},"~N");c$.getCmlBondOrder=c(c$,"getCmlBondOrder",function(a){a=JU.Edge.getBondOrderNameFromOrder(a);switch(a.charAt(0)){case "s":case "d":case "t":return""+a.toUpperCase().charAt(0);case "a":return 0<=a.indexOf("Double")?"D":0<=a.indexOf("Single")?"S":"aromatic";case "p":return 0<=a.indexOf(" ")?a.substring(a.indexOf(" ")+
1):"partial12"}return null},"~N");c$.getBondOrderNameFromOrder=c(c$,"getBondOrderNameFromOrder",function(a){a&=-131073;switch(a){case 65535:case 131071:return"";case 32768:return JU.Edge.EnumBondOrder.STRUT.$$name;case 1:return JU.Edge.EnumBondOrder.SINGLE.$$name;case 2:return JU.Edge.EnumBondOrder.DOUBLE.$$name}return 0!=(a&224)?"partial "+JU.Edge.getBondOrderNumberFromOrder(a):JM.Bond.isOrderH(a)?JU.Edge.EnumBondOrder.H_REGULAR.$$name:0!=(a&256)?JU.Edge.EnumBondOrder.SINGLE.$$name:JU.Edge.EnumBondOrder.getNameFromCode(a)},
"~N");c$.getPartialBondDotted=c(c$,"getPartialBondDotted",function(a){return a&31},"~N");c$.getPartialBondOrder=c(c$,"getPartialBondOrder",function(a){return(a&-131073)>>5},"~N");c$.getCovalentBondOrder=c(c$,"getCovalentBondOrder",function(a){if(0==(a&1023))return 0;a&=-131073;if(0!=(a&224))return JU.Edge.getPartialBondOrder(a);0!=(a&256)&&(a&=-257);0!=(a&248)&&(a=1);return a&7},"~N");c$.getBondOrderFromFloat=c(c$,"getBondOrderFromFloat",function(a){switch(z(10*a)){case 10:return 1;case 5:case -10:return 33;
case 15:return 515;case -15:return 66;case 20:return 2;case 25:return 97;case -25:return 100;case 30:return 3;case 40:return 4}return 131071},"~N");c$.getBondOrderFromString=c(c$,"getBondOrderFromString",function(a){return JU.Edge.EnumBondOrder.getCodeFromName(a)},"~S");I(self.c$);c$=s(function(){this.code=0;this.$$name=this.number=null;p(this,arguments)},JU.Edge,"EnumBondOrder",Enum);t(c$,function(a,b,d){this.code=a;this.number=b;this.$$name=d},"~N,~S,~S");c$.getCodeFromName=c(c$,"getCodeFromName",
function(a){for(var b,d=0,c=JU.Edge.EnumBondOrder.values();d<c.length&&((b=c[d])||1);d++)if(b.$$name.equalsIgnoreCase(a))return b.code;return 131071},"~S");c$.getNameFromCode=c(c$,"getNameFromCode",function(a){for(var b,d=0,c=JU.Edge.EnumBondOrder.values();d<c.length&&((b=c[d])||1);d++)if(b.code==a)return b.$$name;return"?"},"~N");c$.getNumberFromCode=c(c$,"getNumberFromCode",function(a){for(var b,d=0,c=JU.Edge.EnumBondOrder.values();d<c.length&&((b=c[d])||1);d++)if(b.code==a)return b.number;return"?"},
"~N");D(c$,"SINGLE",0,[1,"1","single"]);D(c$,"DOUBLE",1,[2,"2","double"]);D(c$,"TRIPLE",2,[3,"3","triple"]);D(c$,"QUADRUPLE",3,[4,"4","quadruple"]);D(c$,"AROMATIC",4,[515,"1.5","aromatic"]);D(c$,"STRUT",5,[32768,"1","struts"]);D(c$,"H_REGULAR",6,[2048,"1","hbond"]);D(c$,"PARTIAL01",7,[33,"0.5","partial"]);D(c$,"PARTIAL12",8,[66,"1.5","partialDouble"]);D(c$,"PARTIAL23",9,[97,"2.5","partialTriple"]);D(c$,"PARTIAL32",10,[100,"2.5","partialTriple2"]);D(c$,"AROMATIC_SINGLE",11,[513,"1","aromaticSingle"]);
D(c$,"AROMATIC_DOUBLE",12,[514,"2","aromaticDouble"]);D(c$,"UNSPECIFIED",13,[17,"1","unspecified"]);c$=L();C(c$,"BOND_STEREO_MASK",1024,"BOND_STEREO_NEAR",1025,"BOND_STEREO_FAR",1041,"BOND_AROMATIC_MASK",512,"BOND_AROMATIC_SINGLE",513,"BOND_AROMATIC_DOUBLE",514,"BOND_AROMATIC",515,"BOND_SULFUR_MASK",256,"BOND_PARTIAL_MASK",224,"BOND_PARTIAL01",33,"BOND_PARTIAL12",66,"BOND_PARTIAL23",97,"BOND_PARTIAL32",100,"BOND_COVALENT_MASK",1023,"BOND_COVALENT_SINGLE",1,"BOND_COVALENT_DOUBLE",2,"BOND_COVALENT_TRIPLE",
3,"BOND_COVALENT_QUADRUPLE",4,"BOND_ORDER_UNSPECIFIED",17,"BOND_ORDER_ANY",65535,"BOND_ORDER_NULL",131071,"BOND_STRUT",32768,"BOND_PYMOL_SINGLE",65536,"BOND_PYMOL_MULT",98304,"BOND_NEW",131072,"BOND_HBOND_SHIFT",11,"BOND_HYDROGEN_MASK",30720,"BOND_H_REGULAR",2048,"BOND_H_CALC_MASK",28672,"BOND_H_CALC",4096,"BOND_H_PLUS_2",6144,"BOND_H_PLUS_3",8192,"BOND_H_PLUS_4",10240,"BOND_H_PLUS_5",12288,"BOND_H_MINUS_3",14336,"BOND_H_MINUS_4",16384,"BOND_H_NUCLEOTIDE",18432,"argbsHbondType",[4294928820,4294967040,
4294967040,4294967295,4294902015,4294901760,4294944E3,4278255615,4278255360,4294934656],"FLAG_AROMATIC_DOUBLE",16,"FLAG_AROMATIC_DEFINED",8,"FLAG_AROMATIC_STRICT",4,"FLAG_IGNORE_STEREOCHEMISTRY",2,"FLAG_NO_AROMATIC",1)}),u("JU"),v(["JU.Elements"],"JU.JmolMolecule","java.lang.Character java.util.Hashtable JU.AU $.BS $.PT JU.BNode".split(" "),function(){c$=s(function(){this.nodes=null;this.nElements=this.ac=this.firstAtomIndex=this.indexInModel=this.modelIndex=this.moleculeIndex=0;this.altElementCounts=
this.elementCounts=null;this.altElementMax=this.elementNumberMax=0;this.atomList=this.mf=null;p(this,arguments)},JU,"JmolMolecule");N(c$,function(){this.elementCounts=E(JU.Elements.elementNumberMax,0);this.altElementCounts=E(JU.Elements.altElementMax,0)});t(c$,function(){});c$.getMolecules=c(c$,"getMolecules",function(a,b,d,c){var g=null,e=new JU.BS,h=-1,j=0,k=0,n=Array(4);null==c&&(c=new JU.BS);for(var m=0;m<a.length;m++)if(!c.get(m)&&!e.get(m))if(a[m].isDeleted())c.set(m);else{var r=a[m].getModelIndex();
r!=h&&(h=r,j=0,g=b[r]);e=JU.JmolMolecule.getBranchBitSet(a,m,g,d,-1,!0,!0);0<=e.nextSetBit(0)&&(n=JU.JmolMolecule.addMolecule(n,k++,a,m,e,r,j++,c))}return JU.JmolMolecule.allocateArray(n,k)},"~A,~A,JU.Lst,JU.BS");c$.getBranchBitSet=c(c$,"getBranchBitSet",function(a,b,d,c,g,e,h){var j=JU.BS.newN(a.length);if(0>b)return j;0<=g&&d.clear(g);return JU.JmolMolecule.getCovalentlyConnectedBitSet(a,a[b],d,e,h,c,j)?j:new JU.BS},"~A,~N,JU.BS,JU.Lst,~N,~B,~B");c$.addMolecule=c(c$,"addMolecule",function(a,b,d,
c,g,e,h,j){j.or(g);b==a.length&&(a=JU.JmolMolecule.allocateArray(a,2*b+1));a[b]=JU.JmolMolecule.initialize(d,b,c,g,e,h);return a},"~A,~N,~A,~N,JU.BS,~N,~N,JU.BS");c$.getMolecularFormula=c(c$,"getMolecularFormula",function(a,b,d,c,g){var e=new JU.JmolMolecule;e.nodes=a;e.atomList=b;return e.getMolecularFormula(d,c,g)},"~A,JU.BS,~B,~A,~B");c(c$,"getMolecularFormula",function(a,b,d){if(null!=this.mf)return this.mf;null==this.atomList&&(this.atomList=new JU.BS,this.atomList.setBits(0,this.nodes.length));
this.elementCounts=E(JU.Elements.elementNumberMax,0);this.altElementCounts=E(JU.Elements.altElementMax,0);this.ac=this.atomList.cardinality();for(var c=0,g=this.atomList.nextSetBit(0);0<=g;g=this.atomList.nextSetBit(g+1),c++){var e=this.nodes[g].getAtomicAndIsotopeNumber(),h=null==b?1:z(8*b[c]);e<JU.Elements.elementNumberMax?(0==this.elementCounts[e]&&this.nElements++,this.elementCounts[e]+=h,this.elementNumberMax=Math.max(this.elementNumberMax,e),a&&(e=this.nodes[g].getImplicitHydrogenCount(),0<
e&&(0==this.elementCounts[1]&&this.nElements++,this.elementCounts[1]+=e*h))):(e=JU.Elements.altElementIndexFromNumber(e),0==this.altElementCounts[e]&&this.nElements++,this.altElementCounts[e]+=h,this.altElementMax=Math.max(this.altElementMax,e))}if(null!=b)for(g=1;g<=this.elementNumberMax;g++){var j=x(this.elementCounts[g]/8);if(8*j!=this.elementCounts[g])return"?";this.elementCounts[g]=j}if(d){b=2;for(a=!0;a;){b=1E5;for(g=1;g<=this.elementNumberMax;g++)if(0<(j=this.elementCounts[g])&&j<b)b=j;if(1==
b)break;for(;1<b;b--){a=!0;for(g=1;g<=this.elementNumberMax&&a;g++)if(x((j=this.elementCounts[g])/b)*b!=j)a=!1;if(a){for(g=1;g<=this.elementNumberMax;g++)this.elementCounts[g]/=b;break}}}}a=j="";for(g=1;g<=this.elementNumberMax;g++)b=this.elementCounts[g],0!=b&&(j+=a+JU.Elements.elementSymbolFromNumber(g)+" "+b,a=" ");for(g=1;g<=this.altElementMax;g++)b=this.altElementCounts[g],0!=b&&(j+=a+JU.Elements.elementSymbolFromNumber(JU.Elements.altElementNumberFromIndex(g))+" "+b,a=" ");return j},"~B,~A,~B");
c$.initialize=c(c$,"initialize",function(a,b,d,c,g,e){var h=new JU.JmolMolecule;h.nodes=a;h.firstAtomIndex=d;h.atomList=c;h.ac=c.cardinality();h.moleculeIndex=b;h.modelIndex=g;h.indexInModel=e;return h},"~A,~N,~N,JU.BS,~N,~N");c$.getCovalentlyConnectedBitSet=c(c$,"getCovalentlyConnectedBitSet",function(a,b,d,c,g,e,h){var j=b.getIndex();if(!d.get(j)||!g&&q(b,JU.BNode)&&0<b.getBioStructureTypeName().length)return c;d.clear(j);if(null!=e&&!h.get(j))for(var k=e.size();0<=--k;){var n=e.get(k);if(n.get(j)){h.or(n);
d.andNot(n);for(k=n.nextSetBit(0);0<=k;k=n.nextSetBit(k+1)){var m=a[k];d.set(k);JU.JmolMolecule.getCovalentlyConnectedBitSet(a,m,d,c,g,e,h);d.clear(k)}break}}h.set(j);j=b.getEdges();if(null==j)return!0;for(k=j.length;0<=--k;)if(n=j[k],n.isCovalent()&&!JU.JmolMolecule.getCovalentlyConnectedBitSet(a,n.getOtherAtomNode(b),d,c,g,e,h))return!1;return!0},"~A,JU.Node,JU.BS,~B,~B,JU.Lst,JU.BS");c$.allocateArray=c(c$,"allocateArray",function(a,b){return b==a.length?a:JU.AU.arrayCopyObject(a,b)},"~A,~N");c$.getBitSetForMF=
c(c$,"getBitSetForMF",function(a,b,d){var c=new java.util.Hashtable,g,e;d=JU.PT.rep(JU.PT.clean(d+"Z")," ","");for(var h=0,j=0,k=0,n=d.length;h<n;h++)if((e=Character.isDigit(g=d.charAt(h)))||0<h&&Character.isUpperCase(g)){var k=h,m=d.substring(j,k).trim();if(e)for(;h<n&&Character.isDigit(d.charAt(h));)h++;j=h;c.put(m,[e?JU.PT.parseInt(d.substring(k,j)):1])}d=new JU.BS;for(h=b.nextSetBit(0);0<=h;h=b.nextSetBit(h+1))g=a[h].getElementSymbol(),g=c.get(g),null==g||1>g[0]--||d.set(h);var r;for(a=c.values().iterator();a.hasNext()&&
((r=a.next())||1);)if(0<r[0])return new JU.BS;return d},"~A,JU.BS,~S")}),u("JU"),v(["java.util.Hashtable","JU.DefaultLogger"],"JU.Logger",["java.lang.Long"],function(){c$=A(JU,"Logger");c$.getProperty=c(c$,"getProperty",function(a,b){try{var d=System.getProperty("jmol.logger."+a,null);if(null!=d)return d.equalsIgnoreCase("true")}catch(c){if(!B(c,Exception))throw c;}return b},"~S,~B");c$.setLogger=c(c$,"setLogger",function(a){JU.Logger._logger=a;JU.Logger.debugging=JU.Logger.isActiveLevel(5)||JU.Logger.isActiveLevel(6);
JU.Logger.debuggingHigh=JU.Logger.debugging&&JU.Logger._activeLevels[6]},"JU.LoggerInterface");c$.isActiveLevel=c(c$,"isActiveLevel",function(a){return null!=JU.Logger._logger&&0<=a&&7>a&&JU.Logger._activeLevels[a]},"~N");c$.setActiveLevel=c(c$,"setActiveLevel",function(a,b){0>a&&(a=0);7<=a&&(a=6);JU.Logger._activeLevels[a]=b;JU.Logger.debugging=JU.Logger.isActiveLevel(5)||JU.Logger.isActiveLevel(6);JU.Logger.debuggingHigh=JU.Logger.debugging&&JU.Logger._activeLevels[6]},"~N,~B");c$.setLogLevel=c(c$,
"setLogLevel",function(a){for(var b=7;0<=--b;)JU.Logger.setActiveLevel(b,b<=a)},"~N");c$.getLevel=c(c$,"getLevel",function(a){switch(a){case 6:return"DEBUGHIGH";case 5:return"DEBUG";case 4:return"INFO";case 3:return"WARN";case 2:return"ERROR";case 1:return"FATAL"}return"????"},"~N");c$.logLevel=c(c$,"logLevel",function(){return JU.Logger._logLevel});c$.doLogLevel=c(c$,"doLogLevel",function(a){JU.Logger._logLevel=a},"~B");c$.debug=c(c$,"debug",function(a){if(JU.Logger.debugging)try{JU.Logger._logger.debug(a)}catch(b){}},
"~S");c$.info=c(c$,"info",function(a){try{JU.Logger.isActiveLevel(4)&&JU.Logger._logger.info(a)}catch(b){}},"~S");c$.warn=c(c$,"warn",function(a){try{JU.Logger.isActiveLevel(3)&&JU.Logger._logger.warn(a)}catch(b){}},"~S");c$.warnEx=c(c$,"warnEx",function(a,b){try{JU.Logger.isActiveLevel(3)&&JU.Logger._logger.warnEx(a,b)}catch(d){}},"~S,Throwable");c$.error=c(c$,"error",function(a){try{JU.Logger.isActiveLevel(2)&&JU.Logger._logger.error(a)}catch(b){}},"~S");c$.errorEx=c(c$,"errorEx",function(a,b){try{JU.Logger.isActiveLevel(2)&&
JU.Logger._logger.errorEx(a,b)}catch(d){}},"~S,Throwable");c$.getLogLevel=c(c$,"getLogLevel",function(){for(var a=7;0<=--a;)if(JU.Logger.isActiveLevel(a))return a;return 0});c$.fatal=c(c$,"fatal",function(a){try{JU.Logger.isActiveLevel(1)&&JU.Logger._logger.fatal(a)}catch(b){}},"~S");c$.fatalEx=c(c$,"fatalEx",function(a,b){try{JU.Logger.isActiveLevel(1)&&JU.Logger._logger.fatalEx(a,b)}catch(d){}},"~S,Throwable");c$.startTimer=c(c$,"startTimer",function(a){null!=a&&JU.Logger.htTiming.put(a,Long.$valueOf(System.currentTimeMillis()))},
"~S");c$.getTimerMsg=c(c$,"getTimerMsg",function(a,b){0==b&&(b=JU.Logger.getTimeFrom(a));return"Time for "+a+": "+b+" ms"},"~S,~N");c$.getTimeFrom=c(c$,"getTimeFrom",function(a){var b;return null==a||null==(b=JU.Logger.htTiming.get(a))?-1:System.currentTimeMillis()-b.longValue()},"~S");c$.checkTimer=c(c$,"checkTimer",function(a,b){var d=JU.Logger.getTimeFrom(a);0<=d&&!a.startsWith("(")&&JU.Logger.info(JU.Logger.getTimerMsg(a,d));b&&JU.Logger.startTimer(a);return d},"~S,~B");c$.checkMemory=c(c$,"checkMemory",
function(){JU.Logger.info("Memory: Total-Free=0; Total=0; Free=0; Max=0")});c$._logger=c$.prototype._logger=new JU.DefaultLogger;C(c$,"LEVEL_FATAL",1,"LEVEL_ERROR",2,"LEVEL_WARN",3,"LEVEL_INFO",4,"LEVEL_DEBUG",5,"LEVEL_DEBUGHIGH",6,"LEVEL_MAX",7,"_activeLevels",ea(7,!1),"_logLevel",!1,"debugging",!1,"debuggingHigh",!1);JU.Logger._activeLevels[6]=JU.Logger.getProperty("debugHigh",!1);JU.Logger._activeLevels[5]=JU.Logger.getProperty("debug",!1);JU.Logger._activeLevels[4]=JU.Logger.getProperty("info",
!0);JU.Logger._activeLevels[3]=JU.Logger.getProperty("warn",!0);JU.Logger._activeLevels[2]=JU.Logger.getProperty("error",!0);JU.Logger._activeLevels[1]=JU.Logger.getProperty("fatal",!0);JU.Logger._logLevel=JU.Logger.getProperty("logLevel",!1);JU.Logger.debugging=null!=JU.Logger._logger&&(JU.Logger._activeLevels[5]||JU.Logger._activeLevels[6]);JU.Logger.debuggingHigh=JU.Logger.debugging&&JU.Logger._activeLevels[6];c$.htTiming=c$.prototype.htTiming=new java.util.Hashtable}),u("JU"),H(JU,"LoggerInterface"),
u("JU"),v(["JU.V3"],"JU.Measure","java.lang.Float javajs.api.Interface JU.Lst $.P3 $.P4 $.Quat".split(" "),function(){c$=A(JU,"Measure");c$.computeAngle=c(c$,"computeAngle",function(a,b,d,c,g,e){c.sub2(a,b);g.sub2(d,b);a=c.angle(g);return e?a/0.017453292:a},"JU.T3,JU.T3,JU.T3,JU.V3,JU.V3,~B");c$.computeAngleABC=c(c$,"computeAngleABC",function(a,b,d,c){var g=new JU.V3,e=new JU.V3;return JU.Measure.computeAngle(a,b,d,g,e,c)},"JU.T3,JU.T3,JU.T3,~B");c$.computeTorsion=c(c$,"computeTorsion",function(a,
b,d,c,g){var e=a.x-b.x,h=a.y-b.y;a=a.z-b.z;var j=d.x-b.x,k=d.y-b.y,n=d.z-b.z,m=d.x-c.x,r=d.y-c.y,p=d.z-c.z;c=h*n-a*k;b=a*j-e*n;var q=e*k-h*j;d=k*p-n*r;n=n*m-j*p;j=j*r-k*m;m=1/(d*d+n*n+j*j);k=Math.sqrt(1/(c*c+b*b+q*q));m=Math.sqrt(m);c=(c*d+b*n+q*j)*k*m;1<c&&(c=1);-1>c&&(c=-1);c=Math.acos(c);e=e*d+h*n+a*j;h=Math.abs(e);c=0<e/h?c:-c;return g?c/0.017453292:c},"JU.T3,JU.T3,JU.T3,JU.T3,~B");c$.computeHelicalAxis=c(c$,"computeHelicalAxis",function(a,b,d){var c=new JU.V3;c.sub2(b,a);var g=d.getTheta(),e=
d.getNormal(),h=c.dot(e);1E-4>Math.abs(h)&&(h=0);var j=new JU.V3;j.cross(c,e);0!=j.dot(j)&&j.normalize();var k=new JU.V3,n=JU.V3.newV(e);0==h&&(h=1.4E-45);n.scale(h);k.sub2(n,c);k.scale(0.5);j.scale(0==g?0:k.length()/Math.tan(3.141592653589793*(g/2/180)));c=JU.V3.newV(j);0!=g&&c.add(k);k=JU.P3.newP(a);k.sub(c);1.4E-45!=h&&e.scale(h);j=JU.P3.newP(k);j.add(e);g=JU.Measure.computeTorsion(a,k,j,b,!0);if(Float.isNaN(g)||1E-4>c.length())g=d.getThetaDirectedV(e);a=Math.abs(0==g?0:360/g);h=Math.abs(1.4E-45==
h?0:e.length()*(0==g?1:360/g));return[k,e,c,JU.P3.new3(g,h,a),j]},"JU.P3,JU.P3,JU.Quat");c$.getPlaneThroughPoints=c(c$,"getPlaneThroughPoints",function(a,b,d,c,g,e){a=JU.Measure.getNormalThroughPoints(a,b,d,c,g);e.set4(c.x,c.y,c.z,a);return e},"JU.T3,JU.T3,JU.T3,JU.V3,JU.V3,JU.P4");c$.getPlaneThroughPoint=c(c$,"getPlaneThroughPoint",function(a,b,d){d.set4(b.x,b.y,b.z,-b.dot(a))},"JU.T3,JU.V3,JU.P4");c$.distanceToPlane=c(c$,"distanceToPlane",function(a,b){return null==a?NaN:(a.x*b.x+a.y*b.y+a.z*b.z+
a.w)/Math.sqrt(a.x*a.x+a.y*a.y+a.z*a.z)},"JU.P4,JU.T3");c$.distanceToPlaneD=c(c$,"distanceToPlaneD",function(a,b,d){return null==a?NaN:(a.x*d.x+a.y*d.y+a.z*d.z+a.w)/b},"JU.P4,~N,JU.P3");c$.distanceToPlaneV=c(c$,"distanceToPlaneV",function(a,b,d){return null==a?NaN:(a.x*d.x+a.y*d.y+a.z*d.z+b)/Math.sqrt(a.x*a.x+a.y*a.y+a.z*a.z)},"JU.V3,~N,JU.P3");c$.calcNormalizedNormal=c(c$,"calcNormalizedNormal",function(a,b,d,c,g){g.sub2(b,a);c.sub2(d,a);c.cross(g,c);c.normalize()},"JU.T3,JU.T3,JU.T3,JU.V3,JU.V3");
c$.getDirectedNormalThroughPoints=c(c$,"getDirectedNormalThroughPoints",function(a,b,d,c,g,e){b=JU.Measure.getNormalThroughPoints(a,b,d,g,e);null!=c&&(d=JU.P3.newP(a),d.add(g),e=d.distance(c),d.sub2(a,g),e>d.distance(c)&&(g.scale(-1),b=-b));return b},"JU.T3,JU.T3,JU.T3,JU.T3,JU.V3,JU.V3");c$.getNormalThroughPoints=c(c$,"getNormalThroughPoints",function(a,b,d,c,g){JU.Measure.calcNormalizedNormal(a,b,d,c,g);g.setT(a);return-g.dot(c)},"JU.T3,JU.T3,JU.T3,JU.V3,JU.V3");c$.getPlaneProjection=c(c$,"getPlaneProjection",
function(a,b,d,c){var g=JU.Measure.distanceToPlane(b,a);c.set(b.x,b.y,b.z);c.normalize();c.scale(-g);d.add2(a,c)},"JU.P3,JU.P4,JU.P3,JU.V3");c$.getNormalFromCenter=c(c$,"getNormalFromCenter",function(a,b,d,c,g,e){var h=new JU.V3;b=JU.Measure.getNormalThroughPoints(b,d,c,e,h);a=0<JU.Measure.distanceToPlaneV(e,b,a);a==g&&e.scale(-1);return!a},"JU.P3,JU.P3,JU.P3,JU.P3,~B,JU.V3");c$.getNormalToLine=c(c$,"getNormalToLine",function(a,b,d){d.sub2(a,b);d.cross(d,JU.Measure.axisY);d.normalize();Float.isNaN(d.x)&&
d.set(1,0,0)},"JU.P3,JU.P3,JU.V3");c$.getBisectingPlane=c(c$,"getBisectingPlane",function(a,b,d,c,g){d.scaleAdd2(0.5,b,a);c.setT(b);c.normalize();JU.Measure.getPlaneThroughPoint(d,c,g)},"JU.P3,JU.V3,JU.T3,JU.V3,JU.P4");c$.projectOntoAxis=c(c$,"projectOntoAxis",function(a,b,d,c){c.sub2(a,b);var g=c.dot(d);a.scaleAdd2(g,d,b);c.sub2(a,b)},"JU.P3,JU.P3,JU.V3,JU.V3");c$.calcBestAxisThroughPoints=c(c$,"calcBestAxisThroughPoints",function(a,b,d,c,g){var e=a.length;b.setT(a[0]);d.sub2(a[e-1],b);d.normalize();
JU.Measure.calcAveragePointN(a,e,b);for(var h=0;h++<g&&0.001<JU.Measure.findAxis(a,e,b,d,c););a=JU.P3.newP(a[0]);JU.Measure.projectOntoAxis(a,b,d,c);b.setT(a)},"~A,JU.P3,JU.V3,JU.V3,~N");c$.findAxis=c(c$,"findAxis",function(a,b,d,c,g){for(var e=new JU.V3,h=new JU.V3,j=new JU.P3,k=new JU.P3,n=JU.V3.newV(c),m=0;0<=--b;)j.setT(a[b]),k.setT(j),JU.Measure.projectOntoAxis(k,d,c,g),h.sub2(j,k),h.cross(g,h),e.add(h),m+=g.lengthSquared();a=JU.V3.newV(e);a.scale(1/m);h.cross(a,c);c.add(h);c.normalize();h.sub2(c,
n);return h.length()},"~A,~N,JU.P3,JU.V3,JU.V3");c$.calcAveragePoint=c(c$,"calcAveragePoint",function(a,b,d){d.set((a.x+b.x)/2,(a.y+b.y)/2,(a.z+b.z)/2)},"JU.P3,JU.P3,JU.P3");c$.calcAveragePointN=c(c$,"calcAveragePointN",function(a,b,d){d.setT(a[0]);for(var c=1;c<b;c++)d.add(a[c]);d.scale(1/b)},"~A,~N,JU.P3");c$.transformPoints=c(c$,"transformPoints",function(a,b,d){for(var c=new JU.Lst,g=0;g<a.size();g++){var e=JU.P3.newP(a.get(g));e.sub(d);b.rotTrans(e);e.add(d);c.addLast(e)}return c},"JU.Lst,JU.M4,JU.P3");
c$.isInTetrahedron=c(c$,"isInTetrahedron",function(a,b,d,c,g,e,h,j,k){var n=0<=JU.Measure.distanceToPlane(JU.Measure.getPlaneThroughPoints(c,g,b,h,j,e),a);if(n!=0<=JU.Measure.distanceToPlane(JU.Measure.getPlaneThroughPoints(b,g,d,h,j,e),a)||n!=0<=JU.Measure.distanceToPlane(JU.Measure.getPlaneThroughPoints(d,g,c,h,j,e),a))return!1;a=JU.Measure.distanceToPlane(JU.Measure.getPlaneThroughPoints(b,d,c,h,j,e),a);if(k)return n==0<=a;g=JU.Measure.distanceToPlane(e,g);return 0>=g*a||Math.abs(g)>Math.abs(a)},
"JU.P3,JU.P3,JU.P3,JU.P3,JU.P3,JU.P4,JU.V3,JU.V3,~B");c$.getIntersectionPP=c(c$,"getIntersectionPP",function(a,b){var d=a.x,c=a.y,g=a.z,e=a.w,h=b.x,j=b.y,k=b.z,n=b.w,m=JU.V3.new3(d,c,g),r=JU.V3.new3(h,j,k),p=new JU.V3;p.cross(m,r);var m=Math.abs(p.x),r=Math.abs(p.y),q=Math.abs(p.z);switch(m>r?m>q?1:3:r>q?2:3){case 1:m=0;r=c*k-j*g;if(0.01>Math.abs(r))return null;g=(g*n-k*e)/r;d=(j*e-n*c)/r;break;case 2:r=d*k-h*g;if(0.01>Math.abs(r))return null;m=(g*n-k*e)/r;g=0;d=(h*e-n*d)/r;break;default:r=d*j-h*
c;if(0.01>Math.abs(r))return null;m=(c*n-j*e)/r;g=(h*e-n*d)/r;d=0}c=new JU.Lst;c.addLast(JU.P3.new3(m,g,d));p.normalize();c.addLast(p);return c},"JU.P4,JU.P4");c$.getIntersection=c(c$,"getIntersection",function(a,b,d,c,g,e){JU.Measure.getPlaneProjection(a,d,c,g);g.set(d.x,d.y,d.z);g.normalize();null==b&&(b=JU.V3.newV(g));d=b.dot(g);if(0.01>Math.abs(d))return null;e.sub2(c,a);c.scaleAdd2(e.dot(g)/d,b,a);return c},"JU.P3,JU.V3,JU.P4,JU.P3,JU.V3,JU.V3");c$.calculateQuaternionRotation=c(c$,"calculateQuaternionRotation",
function(a,b){b[1]=NaN;var d=new JU.Quat;if(1==a[0].length||a[0].length!=a[1].length)return d;var c=a[0].length-1;if(2>c)return d;for(var g=0,e=0,h=0,j=0,k=0,n=0,m=0,r=0,p=0,q=new JU.P3,s=new JU.P3,c=c+1;1<=--c;){var t=a[1][c];q.sub2(a[0][c],a[0][0]);s.sub2(t,a[0][1]);g+=q.x*s.x;e+=q.x*s.y;h+=q.x*s.z;j+=q.y*s.x;k+=q.y*s.y;n+=q.y*s.z;m+=q.z*s.x;r+=q.z*s.y;p+=q.z*s.z}b[0]=JU.Measure.getRmsd(a,d);d=ba(4,4,0);d[0][0]=g+k+p;d[0][1]=d[1][0]=n-r;d[0][2]=d[2][0]=m-h;d[0][3]=d[3][0]=e-j;d[1][1]=g-k-p;d[1][2]=
d[2][1]=e+j;d[1][3]=d[3][1]=m+h;d[2][2]=-g+k-p;d[2][3]=d[3][2]=n+r;d[3][3]=-g-k+p;g=javajs.api.Interface.getInterface("JU.Eigen").setM(d).getEigenvectorsFloatTransposed()[3];d=JU.Quat.newP4(JU.P4.new4(g[1],g[2],g[3],g[0]));b[1]=JU.Measure.getRmsd(a,d);return d},"~A,~A");c$.getTransformMatrix4=c(c$,"getTransformMatrix4",function(a,b,d,c){a=JU.Measure.getCenterAndPoints(a);var g=JU.Measure.getCenterAndPoints(b);b=M(2,0);var e=JU.Measure.calculateQuaternionRotation([a,g],b),g=JU.V3.newVsub(g[0],a[0]);
d.setMV(e.getMatrix(),g);null!=c&&c.setT(a[0]);return b[1]},"JU.Lst,JU.Lst,JU.M4,JU.P3");c$.getCenterAndPoints=c(c$,"getCenterAndPoints",function(a){var b=a.size(),d=Array(b+1);d[0]=new JU.P3;if(0<b){for(var c=0;c<b;c++)d[0].add(d[c+1]=a.get(c));d[0].scale(1/b)}return d},"JU.Lst");c$.getRmsd=c(c$,"getRmsd",function(a,b){for(var d=0,c=a[0],g=a[1],e=c[0],h=g[0],j=c.length-1,k=new JU.P3,n=j+1;1<=--n;)k.sub2(c[n],e),b.transform2(k,k).add(h),d+=k.distanceSquared(g[n]);return Math.sqrt(d/j)},"~A,JU.Quat");
C(c$,"radiansPerDegree",0.017453292519943295);c$.axisY=c$.prototype.axisY=JU.V3.new3(0,1,0)}),u("JU"),v(null,"JU.MeshSurface","java.lang.Float JU.AU $.P3 J.api.Interface JU.BoxInfo $.C $.Geodesic $.TempArray".split(" "),function(){c$=s(function(){this.meshType=this.spanningVectors=this.slicer=this.vwr=null;this.vc=0;this.vertexSource=this.vvs=this.vs=null;this.pc=0;this.pis=null;this.haveQuads=this.isTriangleSet=this.colorsExplicit=!1;this.colixBack=this.colix=0;this.isColorSolid=!0;this.normalsTemp=
this.normals=this.vcs=this.pcs=this.altVertices=this.offset=null;this.normixCount=this.normalCount=0;this.vertexSets=this.surfaceSet=this.mat4=this.bsPolygons=null;this.nSets=0;this.dataOnly=!1;this.vertexCount0=this.polygonCount0=this.iC=this.iB=this.iA=this.lastColix=this.lastColor=0;this.bsSlabGhost=this.bsSlabDisplay=null;this.slabColix=this.slabMeshType=0;this.slabOptions=this.bsDisplay=null;this.mergePolygonCount0=this.mergeVertexCount0=0;this.isMerged=!1;p(this,arguments)},JU,"MeshSurface");
c(c$,"getMeshSlicer",function(){return null==this.slicer?this.slicer=J.api.Interface.getInterface("JU.MeshSlicer",this.vwr,"script").set(this):this.slicer});c$.newMesh=c(c$,"newMesh",function(a,b,d,c,g,e){var h=new JU.MeshSurface;h.pis=c;a?h.altVertices=b:h.vs=b;h.vc=0==d?b.length:d;h.normals=g;h.normalCount=0==e&&null!=g?g.length:e;return h},"~B,~A,~N,~A,~A,~N");c(c$,"getVertices",function(){return null==this.altVertices?this.vs:this.altVertices});c(c$,"getFaces",function(){return this.pis});c(c$,
"setColix",function(a){this.colix=a},"~N");c(c$,"setColixBack",function(a){this.colixBack=a},"~N");c(c$,"addV",function(a,b){0==this.vc?this.vs=Array(25):this.vc==this.vs.length&&(this.vs=JU.AU.doubleLength(this.vs));this.vs[this.vc]=b?JU.P3.newP(a):a;return this.vc++},"JU.T3,~B");c(c$,"addTriangle",function(a,b,d){this.addPolygon([a,b,d],null)},"~N,~N,~N");c(c$,"addQuad",function(a,b,d,c){this.haveQuads=!0;this.addPolygon([a,b,d,c],null)},"~N,~N,~N,~N");c(c$,"setPolygonCount",function(a){this.pc=
a;if(!(0>a)&&(null==this.pis||a>this.pis.length))this.pis=JU.AU.newInt2(a)},"~N");c(c$,"addVCVal",function(a,b,d){0==this.vc?this.vvs=M(25,0):this.vc>=this.vvs.length&&(this.vvs=JU.AU.doubleLengthF(this.vvs));this.vvs[this.vc]=b;return this.addV(a,d)},"JU.T3,~N,~B");c(c$,"addTriangleCheck",function(a,b,d,c,g,e){return null==this.vs||null!=this.vvs&&(Float.isNaN(this.vvs[a])||Float.isNaN(this.vvs[b])||Float.isNaN(this.vvs[d]))||Float.isNaN(this.vs[a].x)||Float.isNaN(this.vs[b].x)||Float.isNaN(this.vs[d].x)?
-1:this.addPolygonV3(a,b,d,c,g,e,null)},"~N,~N,~N,~N,~N,~N");c(c$,"addPolygonV3",function(a,b,d,c,g,e,h){return this.dataOnly?this.addPolygon([a,b,d,c],h):this.addPolygonC([a,b,d,c,g],e,h,0>g)},"~N,~N,~N,~N,~N,~N,JU.BS");c(c$,"addPolygonC",function(a,b,d,c){if(0!=b){if(null==this.pcs||0==this.pc)this.lastColor=0;c?this.colorsExplicit=!0:(null==this.pcs?this.pcs=W(25,0):this.pc>=this.pcs.length&&(this.pcs=JU.AU.doubleLengthShort(this.pcs)),this.pcs[this.pc]=c?2047:b==this.lastColor?this.lastColix:
this.lastColix=JU.C.getColix(this.lastColor=b))}return this.addPolygon(a,d)},"~A,~N,JU.BS,~B");c(c$,"addPolygon",function(a,b){var d=this.pc;0==d?this.pis=JU.AU.newInt2(25):d==this.pis.length&&(this.pis=JU.AU.doubleLength(this.pis));null!=b&&b.set(d);this.pis[this.pc++]=a;return d},"~A,JU.BS");c(c$,"invalidatePolygons",function(){for(var a=this.pc;--a>=this.mergePolygonCount0;)if((null==this.bsSlabDisplay||this.bsSlabDisplay.get(a))&&null==this.setABC(a))this.pis[a]=null});c(c$,"setABC",function(a){if(null!=
this.bsSlabDisplay&&!this.bsSlabDisplay.get(a)&&(null==this.bsSlabGhost||!this.bsSlabGhost.get(a)))return null;a=this.pis[a];if(null==a||3>a.length)return null;this.iA=a[0];this.iB=a[1];this.iC=a[2];return null==this.vvs||!Float.isNaN(this.vvs[this.iA])&&!Float.isNaN(this.vvs[this.iB])&&!Float.isNaN(this.vvs[this.iC])?a:null},"~N");c(c$,"setTranslucentVertices",function(){},"JU.BS");c(c$,"getSlabColor",function(){return null==this.bsSlabGhost?null:JU.C.getHexCode(this.slabColix)});c(c$,"getSlabTranslucency",
function(){return null==this.bsSlabGhost?null:""+JU.C.getColixTranslucencyFractional(this.slabColix)});c(c$,"getSlabType",function(){return null!=this.bsSlabGhost&&1073742018==this.slabMeshType?"mesh":null});c(c$,"resetSlab",function(){null!=this.slicer&&this.slicer.slabPolygons(JU.TempArray.getSlabObjectType(1048587,null,!1,null),!1)});c(c$,"slabPolygonsList",function(a,b){this.getMeshSlicer();for(var d=0;d<a.size()&&this.slicer.slabPolygons(a.get(d),b);d++);},"JU.Lst,~B");c(c$,"slabBrillouin",function(){},
"~A");c(c$,"getResolution",function(){return 0});c$.getSphereData=c(c$,"getSphereData",function(a){JU.Geodesic.createGeodesic(a);var b=JU.Geodesic.getVertexCount(a),d=JU.Geodesic.getFaceVertexes(a),c=x(d.length/3);a=JU.AU.newInt2(c);for(var g=0,e=0;g<c;g++)a[g]=[d[e++],d[e++],d[e++]];d=Array(b);for(g=0;g<b;g++)d[g]=JU.Geodesic.getVertexVector(g);return JU.MeshSurface.newMesh(!0,d,0,a,d,0)},"~N");c(c$,"setBox",function(a,b){a.set(3.4028235E38,3.4028235E38,3.4028235E38);b.set(-3.4028235E38,-3.4028235E38,
-3.4028235E38);for(var d=0;d<this.vc;d++){var c=this.vs[d];Float.isNaN(c.x)||JU.BoxInfo.addPoint(c,a,b,0)}},"JU.P3,JU.P3");c(c$,"setBoundingBox",function(){},"~A");c$.getSphericalInterpolationFraction=c(c$,"getSphericalInterpolationFraction",function(a,b,d,c){b=Math.abs(a+b)/c;d=Math.abs(a+d)/c;a/=c;c=b*b;var g=c-d*d+1;return(g+(b<d?1:-1)*Math.sqrt(g*g+4*(a*a-c)))/2},"~N,~N,~N,~N");C(c$,"SEED_COUNT",25,"P_CHECK",3,"P_CONTOUR",4,"P_EXPLICIT_COLOR",4)}),u("JU"),v(["JU.Geodesic"],"JU.Normix",["JU.BS"],
function(){c$=A(JU,"Normix");c$.getNormixCount=c(c$,"getNormixCount",function(){return 1<JU.Normix.normixCount?JU.Normix.normixCount:JU.Normix.normixCount=JU.Geodesic.getVertexCount(3)});c$.newVertexBitSet=c(c$,"newVertexBitSet",function(){return JU.BS.newN(JU.Normix.getNormixCount())});c$.getVertexVectors=c(c$,"getVertexVectors",function(){null==JU.Normix.vertexVectors&&(JU.Normix.vertexVectors=JU.Geodesic.getVertexVectors());return JU.Normix.vertexVectors});c$.setInverseNormixes=c(c$,"setInverseNormixes",
function(){if(null==JU.Normix.inverseNormixes){JU.Normix.getNormixCount();JU.Normix.getVertexVectors();JU.Normix.inverseNormixes=W(JU.Normix.normixCount,0);for(var a=new JU.BS,b=JU.Normix.normixCount;0<=--b;){var d=JU.Normix.vertexVectors[b];JU.Normix.inverseNormixes[b]=JU.Normix.getNormix(-d.x,-d.y,-d.z,3,a)}}});c$.getInverseNormix=c(c$,"getInverseNormix",function(a){return JU.Normix.inverseNormixes[a]},"~N");c$.getNeighborVertexArrays=c(c$,"getNeighborVertexArrays",function(){null==JU.Normix.neighborVertexesArrays&&
(JU.Normix.neighborVertexesArrays=JU.Geodesic.getNeighborVertexesArrays());return JU.Normix.neighborVertexesArrays});c$.getNormixV=c(c$,"getNormixV",function(a,b){return JU.Normix.getNormix(a.x,a.y,a.z,3,b)},"JU.V3,JU.BS");c$.get2SidedNormix=c(c$,"get2SidedNormix",function(a,b){return~JU.Normix.getNormixV(a,b)},"JU.V3,JU.BS");c$.getNormix=c(c$,"getNormix",function(a,b,d,c,g){var e,h;0<=d?(e=0,h=d-1):(e=11,h=d- -1);g.clearAll();g.set(e);JU.Normix.getVertexVectors();JU.Normix.getNeighborVertexArrays();
h=a*a+b*b+h*h;for(var j=0;j<=c;++j)for(var k=JU.Normix.neighborVertexesArrays[j],n=6*e,m=n+(12>e?5:6);--m>=n;){var r=k[m];if(!g.get(r)){g.set(r);var p=JU.Normix.vertexVectors[r],q;q=p.x-a;var s=q*q;s>=h||(q=p.y-b,s+=q*q,s>=h||(q=p.z-d,s+=q*q,s>=h||(e=r,h=s)))}}return e},"~N,~N,~N,~N,JU.BS");C(c$,"NORMIX_GEODESIC_LEVEL",3,"normixCount",0,"vertexVectors",null,"inverseNormixes",null,"neighborVertexesArrays",null,"NORMIX_NULL",9999)}),u("JU"),v(null,"JU.Parser",["java.lang.Float","JU.PT"],function(){c$=
A(JU,"Parser");c$.parseStringInfestedFloatArray=c(c$,"parseStringInfestedFloatArray",function(a,b,d){return JU.Parser.parseFloatArrayBsData(JU.PT.getTokens(a),b,d)},"~S,JU.BS,~A");c$.parseFloatArrayBsData=c(c$,"parseFloatArrayBsData",function(a,b,d){for(var c=d.length,g=a.length,e=0,h=0,j=null!=b,k=j?b.nextSetBit(0):0;0<=k&&k<c&&e<g;k=j?b.nextSetBit(k+1):k+1){for(var n;Float.isNaN(n=JU.PT.parseFloat(a[e++]))&&e<g;);Float.isNaN(n)||(d[h=k]=n);if(e==g)break}return h+1},"~A,JU.BS,~A");c$.parseFloatArrayFromMatchAndField=
c(c$,"parseFloatArrayFromMatchAndField",function(a,b,d,c,g,e,h,j,k){var n,m=-1,r=null!=g,p=JU.Parser.markLines(a,0<=a.indexOf("\n")?"\n":";");k=1>=k||k>=p.length?0:k-1;var q=0==k?0:p[k-1],s=p.length;null==j&&(j=M(s-k,0));for(var t=j.length,u=0>=h?Math.max(e,d):Math.max(e+h,d+c)-1,v=null!=b;k<s;k++){var x=a.substring(q,p[k]).trim(),q=p[k],z=0>=h?JU.PT.getTokens(x):null;if(0>=h){if(z.length<u||Float.isNaN(n=JU.PT.parseFloat(z[e-1])))continue}else if(x.length<u||Float.isNaN(n=JU.PT.parseFloat(x.substring(e-
1,e+h-1))))continue;if(r){x=JU.PT.parseInt(null==z?x.substring(d-1,d+c-1):z[d-1]);if(-2147483648==x||0>x||x>=t||0>(x=g[x]))continue;v&&b.set(x)}else{v?m=b.nextSetBit(m+1):m++;if(0>m||m>=t)break;x=m}j[x]=n}return j},"~S,JU.BS,~N,~N,~A,~N,~N,~A,~N");c$.fixDataString=c(c$,"fixDataString",function(a){a=a.$replace(";",0>a.indexOf("\n")?"\n":" ");a=JU.PT.trim(a,"\n \t");a=JU.PT.rep(a,"\n ","\n");return a=JU.PT.rep(a,"\n\n","\n")},"~S");c$.markLines=c(c$,"markLines",function(a,b){for(var d=0,c=a.length;0<=
--c;)a.charAt(c)==b&&d++;for(var c=E(d+1,0),g=d=0;0<=(g=a.indexOf(b,g));)c[d++]=++g;c[d]=a.length;return c},"~S,~S")}),u("JU"),v(["JU.P3"],"JU.Point3fi",null,function(){c$=s(function(){this.mi=-1;this.sZ=this.sY=this.sX=this.i=0;this.sD=-1;p(this,arguments)},JU,"Point3fi",JU.P3,Cloneable);c$.set2=c(c$,"set2",function(a,b){a.x=b.x;a.y=b.y;a.z=b.z},"JU.P3,JU.P3i");c(c$,"copy",function(){try{return this.clone()}catch(a){if(B(a,CloneNotSupportedException))return null;throw a;}})}),u("JU"),c$=s(function(){this.height=
this.width=this.y=this.x=0;p(this,arguments)},JU,"Rectangle"),c(c$,"contains",function(a,b){return a>=this.x&&b>=this.y&&a-this.x<this.width&&b-this.y<this.height},"~N,~N"),u("JU"),v(null,"JU.Rgb16",["JU.SB"],function(){c$=s(function(){this.b=this.g=this.r=0;p(this,arguments)},JU,"Rgb16");t(c$,function(){});c$.newI=c(c$,"newI",function(a){var b=new JU.Rgb16;b.setInt(a);return b},"~N");c(c$,"setInt",function(a){this.r=a>>8&65280|128;this.g=a&65280|128;this.b=a<<8&65280|128},"~N");c(c$,"setRgb",function(a){this.r=
a.r;this.g=a.g;this.b=a.b},"JU.Rgb16");c(c$,"diffDiv",function(a,b,d){this.r=x((a.r-b.r)/d);this.g=x((a.g-b.g)/d);this.b=x((a.b-b.b)/d)},"JU.Rgb16,JU.Rgb16,~N");c(c$,"setAndIncrement",function(a,b){this.r=a.r;a.r+=b.r;this.g=a.g;a.g+=b.g;this.b=a.b;a.b+=b.b},"JU.Rgb16,JU.Rgb16");c(c$,"getArgb",function(){return 4278190080|this.r<<8&16711680|this.g&65280|this.b>>8});j(c$,"toString",function(){return(new JU.SB).append("Rgb16(").appendI(this.r).appendC(",").appendI(this.g).appendC(",").appendI(this.b).append(" -> ").appendI(this.r>>
8&255).appendC(",").appendI(this.g>>8&255).appendC(",").appendI(this.b>>8&255).appendC(")").toString()})}),u("JU"),v(["JU.AU","$.V3"],"JU.Shader",["JU.CU","JU.C"],function(){c$=s(function(){this.zLight=this.yLight=this.xLight=0;this.lightSource=null;this.specularOn=!0;this.usePhongExponent=!1;this.ambientPercent=45;this.diffusePercent=84;this.specularExponent=6;this.specularPercent=22;this.specularPower=40;this.phongExponent=64;this.specularFactor=this.intenseFraction=this.diffuseFactor=this.ambientFraction=
0;this.ashadesGreyscale=this.ashades=null;this.celOn=!1;this.celPower=10;this.celZ=this.celRGB=0;this.useLight=!1;this.sphereShadeIndexes=null;this.seed=305419897;this.ellipsoidShades=this.sphereShapeCache=null;this.nIn=this.nOut=0;p(this,arguments)},JU,"Shader");N(c$,function(){this.lightSource=new JU.V3;this.ambientFraction=this.ambientPercent/100;this.diffuseFactor=this.diffusePercent/100;this.intenseFraction=this.specularPower/100;this.specularFactor=this.specularPercent/100;this.ashades=JU.AU.newInt2(128);
this.sphereShadeIndexes=Q(65536,0);this.sphereShapeCache=JU.AU.newInt2(128)});t(c$,function(){this.setLightSource(-1,-1,2.5)});c(c$,"setLightSource",function(a,b,d){this.lightSource.set(a,b,d);this.lightSource.normalize();this.xLight=this.lightSource.x;this.yLight=this.lightSource.y;this.zLight=this.lightSource.z},"~N,~N,~N");c(c$,"setCel",function(a,b,d){a=a&&0!=b;d=JU.C.getArgb(JU.C.getBgContrast(d));d=4278190080==d?4278453252:-1==d?-2:d+1;this.celOn==a&&this.celRGB==d&&this.celPower==b||(this.celOn=
a,this.celPower=b,this.useLight=!this.celOn||0<b,this.celZ=1-Math.pow(2,-Math.abs(b)/10),this.celRGB=d,this.flushCaches())},"~B,~N,~N");c(c$,"flushCaches",function(){this.checkShades(JU.C.colixMax);for(var a=JU.C.colixMax;0<=--a;)this.ashades[a]=null;this.calcSphereShading();for(a=128;0<=--a;)this.sphereShapeCache[a]=null;this.ellipsoidShades=null});c(c$,"setLastColix",function(a,b){JU.C.allocateColix(a,!0);this.checkShades(2047);b&&JU.C.setLastGrey(a);this.ashades[2047]=this.getShades2(a,!1)},"~N,~B");
c(c$,"getShades",function(a){this.checkShades(JU.C.colixMax);a&=-30721;var b=this.ashades[a];null==b&&(b=this.ashades[a]=this.getShades2(JU.C.argbs[a],!1));return b},"~N");c(c$,"getShadesG",function(a){this.checkShades(JU.C.colixMax);a&=-30721;null==this.ashadesGreyscale&&(this.ashadesGreyscale=JU.AU.newInt2(this.ashades.length));var b=this.ashadesGreyscale[a];null==b&&(b=this.ashadesGreyscale[a]=this.getShades2(JU.C.argbs[a],!0));return b},"~N");c(c$,"checkShades",function(a){null!=this.ashades&&
this.ashades.length>=a||(2047==a&&a++,this.ashades=JU.AU.arrayCopyII(this.ashades,a),null!=this.ashadesGreyscale&&(this.ashadesGreyscale=JU.AU.arrayCopyII(this.ashadesGreyscale,a)))},"~N");c(c$,"getShades2",function(a,b){var d=E(64,0);if(0==a)return d;for(var c=a>>16&255,g=a>>8&255,e=a&255,h=0,j=0,k=0,n=this.ambientFraction;;)if(h=c*n+0.5,j=g*n+0.5,k=e*n+0.5,0<n&&4>h&&4>j&&4>k)c++,g++,e++,0.1>n&&(n+=0.1),a=JU.CU.rgb(x(Math.floor(c)),x(Math.floor(g)),x(Math.floor(e)));else break;var m=0,n=(1-n)/52,
c=c*n,g=g*n,e=e*n;if(this.celOn){n=JU.CU.rgb(x(Math.floor(h)),x(Math.floor(j)),x(Math.floor(k)));if(0<=this.celPower)for(;32>m;++m)d[m]=n;j+=32*g;k+=32*e;for(n=JU.CU.rgb(x(Math.floor(h+32*c)),x(Math.floor(j)),x(Math.floor(k)));64>m;m++)d[m]=n;d[0]=d[1]=this.celRGB}else{for(;52>m;++m)d[m]=JU.CU.rgb(x(Math.floor(h)),x(Math.floor(j)),x(Math.floor(k))),h+=c,j+=g,k+=e;d[m++]=a;n=this.intenseFraction/(64-m);c=(255.5-h)*n;g=(255.5-j)*n;for(e=(255.5-k)*n;64>m;m++)h+=c,j+=g,k+=e,d[m]=JU.CU.rgb(x(Math.floor(h)),
x(Math.floor(j)),x(Math.floor(k)))}if(b)for(;0<=--m;)d[m]=JU.CU.toFFGGGfromRGB(d[m]);return d},"~N,~B");c(c$,"getShadeIndex",function(a,b,d){var c=Math.sqrt(a*a+b*b+d*d);return Math.round(63*this.getShadeF(a/c,b/c,d/c))},"~N,~N,~N");c(c$,"getShadeB",function(a,b,d){return Math.round(63*this.getShadeF(a,b,d))},"~N,~N,~N");c(c$,"getShadeFp8",function(a,b,d){var c=Math.sqrt(a*a+b*b+d*d);return x(Math.floor(16128*this.getShadeF(a/c,b/c,d/c)))},"~N,~N,~N");c(c$,"getShadeF",function(a,b,d){b=this.useLight?
a*this.xLight+b*this.yLight+d*this.zLight:d;if(0>=b)return 0;a=b*this.diffuseFactor;if(this.specularOn&&(b=2*b*d-this.zLight,0<b)){if(this.usePhongExponent)b=Math.pow(b,this.phongExponent);else for(var c=this.specularExponent;0<=--c&&1E-4<b;)b*=b;a+=b*this.specularFactor}return this.celOn&&d<this.celZ?0:1<a?1:a},"~N,~N,~N");c(c$,"getShadeN",function(a,b,d,c){b=x(Math.floor(16128*this.getShadeF(a/c,b/c,d/c)));a=b>>8;if(!this.useLight)return a;(b&255)>this.nextRandom8Bit()&&++a;b=this.seed&65535;21845>
b&&0<a?--a:43690<b&&63>a&&++a;return a},"~N,~N,~N,~N");c(c$,"calcSphereShading",function(){for(var a=-127.5,b=0;256>b;++a,++b)for(var d=-127.5,c=a*a,g=0;256>g;++d,++g){var e=0,h=16900-c-d*d;0<h&&(e=Math.sqrt(h),e=this.getShadeN(a,d,e,130));this.sphereShadeIndexes[(g<<8)+b]=e}});c(c$,"nextRandom8Bit",function(){var a=this.seed;this.seed=a=(a<<16)+(a<<1)+a&2147483647;return a>>23});c(c$,"getEllipsoidShade",function(a,b,d,c,g){var e=g.m00*a+g.m01*b+g.m02*d+g.m03,h=g.m10*a+g.m11*b+g.m12*d+g.m13;a=g.m20*
a+g.m21*b+g.m22*d+g.m23;c=Math.min(c/2,45)/Math.sqrt(e*e+h*h+a*a);e=z(-e*c);h=z(-h*c);c=z(a*c);if(a=-20>e||20<=e||-20>h||20<=h||0>c||40<=c){for(;0==e%2&&0==h%2&&0==c%2&&0<e+h+c;)e>>=1,h>>=1,c>>=1;a=-20>e||20<=e||-20>h||20<=h||0>c||40<=c}a?this.nOut++:this.nIn++;return a?this.getShadeIndex(e,h,c):this.ellipsoidShades[e+20][h+20][c]},"~N,~N,~N,~N,JU.M4");c(c$,"createEllipsoidShades",function(){this.ellipsoidShades=Q(40,40,40,0);for(var a=0;40>a;a++)for(var b=0;40>b;b++)for(var c=0;40>c;c++)this.ellipsoidShades[a][b][c]=
this.getShadeIndex(a-20,b-20,c)});C(c$,"SHADE_INDEX_MAX",64,"SHADE_INDEX_LAST",63,"SHADE_INDEX_NORMAL",52,"SHADE_INDEX_NOISY_LIMIT",56,"SLIM",20,"SDIM",40,"maxSphereCache",128)}),u("JU"),v(null,"JU.SimpleUnitCell",["java.lang.Float","JU.AU","$.M4","$.P3","$.V3"],function(){c$=s(function(){this.matrixFractionalToCartesian=this.matrixCartesianToFractional=this.notionalUnitcell=null;this.dimension=this.c_=this.b_=this.a_=this.cB_=this.cA_=this.sinGamma=this.cosGamma=this.sinBeta=this.cosBeta=this.sinAlpha=
this.cosAlpha=this.gamma=this.beta=this.alpha=this.c=this.b=this.a=this.nc=this.nb=this.na=this.volume=0;this.matrixFtoCNoOffset=this.matrixCtoFANoOffset=this.fractionalOrigin=null;p(this,arguments)},JU,"SimpleUnitCell");c(c$,"isSupercell",function(){return 1<this.na||1<this.nb||1<this.nc});c$.isValid=c(c$,"isValid",function(a){return null!=a&&(0<a[0]||14<a.length&&!Float.isNaN(a[14]))},"~A");t(c$,function(){this.fractionalOrigin=new JU.P3});c$.newA=c(c$,"newA",function(a){var b=new JU.SimpleUnitCell;
b.init(a);return b},"~A");c(c$,"init",function(a){null==a&&(a=[1,1,1,90,90,90]);if(JU.SimpleUnitCell.isValid(a)){this.notionalUnitcell=JU.AU.arrayCopyF(a,a.length);this.a=a[0];this.b=a[1];this.c=a[2];this.alpha=a[3];this.beta=a[4];this.gamma=a[5];this.na=Math.max(1,25<=a.length&&!Float.isNaN(a[22])?z(a[22]):1);this.nb=Math.max(1,25<=a.length&&!Float.isNaN(a[23])?z(a[23]):1);this.nc=Math.max(1,25<=a.length&&!Float.isNaN(a[24])?z(a[24]):1);if(0>=this.a){var b=JU.V3.new3(a[6],a[7],a[8]),c=JU.V3.new3(a[9],
a[10],a[11]),f=JU.V3.new3(a[12],a[13],a[14]);this.setABC(b,c,f);0>this.c&&(a=JU.AU.arrayCopyF(a,-1),0>this.b&&(c.set(0,0,1),c.cross(c,b),0.001>c.length()&&c.set(0,1,0),c.normalize(),a[9]=c.x,a[10]=c.y,a[11]=c.z),0>this.c&&(f.cross(b,c),f.normalize(),a[12]=f.x,a[13]=f.y,a[14]=f.z))}this.a*=this.na;0>=this.b?this.dimension=this.b=this.c=1:0>=this.c?(this.c=1,this.b*=this.nb,this.dimension=2):(this.b*=this.nb,this.c*=this.nc,this.dimension=3);this.setCellParams();if(21<a.length&&!Float.isNaN(a[21])){b=
M(16,0);for(c=0;16>c;c++){switch(c%4){case 0:f=this.na;break;case 1:f=this.nb;break;case 2:f=this.nc;break;default:f=1}b[c]=a[6+c]*f}this.matrixCartesianToFractional=JU.M4.newA16(b);this.matrixCartesianToFractional.getTranslation(this.fractionalOrigin);this.matrixFractionalToCartesian=JU.M4.newM4(this.matrixCartesianToFractional).invert();1==a[0]&&this.setParamsFromMatrix()}else 14<a.length&&!Float.isNaN(a[14])?(b=this.matrixFractionalToCartesian=new JU.M4,b.setColumn4(0,a[6]*this.na,a[7]*this.na,
a[8]*this.na,0),b.setColumn4(1,a[9]*this.nb,a[10]*this.nb,a[11]*this.nb,0),b.setColumn4(2,a[12]*this.nc,a[13]*this.nc,a[14]*this.nc,0)):(b=this.matrixFractionalToCartesian=new JU.M4,b.setColumn4(0,this.a,0,0,0),b.setColumn4(1,this.b*this.cosGamma,this.b*this.sinGamma,0,0),b.setColumn4(2,this.c*this.cosBeta,this.c*(this.cosAlpha-this.cosBeta*this.cosGamma)/this.sinGamma,this.volume/(this.a*this.b*this.sinGamma),0)),b.setColumn4(3,0,0,0,1),this.matrixCartesianToFractional=JU.M4.newM4(this.matrixFractionalToCartesian).invert();
this.matrixCtoFANoOffset=this.matrixCartesianToFractional;this.matrixFtoCNoOffset=this.matrixFractionalToCartesian}},"~A");c(c$,"setParamsFromMatrix",function(){var a=JU.V3.new3(1,0,0),b=JU.V3.new3(0,1,0),c=JU.V3.new3(0,0,1);this.matrixFractionalToCartesian.rotate(a);this.matrixFractionalToCartesian.rotate(b);this.matrixFractionalToCartesian.rotate(c);this.setABC(a,b,c);this.setCellParams()});c(c$,"setABC",function(a,b,c){this.a=a.length();this.b=b.length();this.c=c.length();0!=this.a&&(0==this.b?
this.b=this.c=-1:0==this.c&&(this.c=-1),this.alpha=0>this.b||0>this.c?90:b.angle(c)/0.017453292,this.beta=0>this.c?90:a.angle(c)/0.017453292,this.gamma=0>this.b?90:a.angle(b)/0.017453292)},"JU.V3,JU.V3,JU.V3");c(c$,"setCellParams",function(){this.cosAlpha=Math.cos(0.017453292*this.alpha);this.sinAlpha=Math.sin(0.017453292*this.alpha);this.cosBeta=Math.cos(0.017453292*this.beta);this.sinBeta=Math.sin(0.017453292*this.beta);this.cosGamma=Math.cos(0.017453292*this.gamma);this.sinGamma=Math.sin(0.017453292*
this.gamma);var a=Math.sqrt(this.sinAlpha*this.sinAlpha+this.sinBeta*this.sinBeta+this.sinGamma*this.sinGamma+2*this.cosAlpha*this.cosBeta*this.cosGamma-2);this.volume=this.a*this.b*this.c*a;this.cA_=(this.cosAlpha-this.cosBeta*this.cosGamma)/this.sinGamma;this.cB_=a/this.sinGamma;this.a_=this.b*this.c*this.sinAlpha/this.volume;this.b_=this.a*this.c*this.sinBeta/this.volume;this.c_=this.a*this.b*this.sinGamma/this.volume});c(c$,"getFractionalOrigin",function(){return this.fractionalOrigin});c(c$,
"toSupercell",function(a){a.x/=this.na;a.y/=this.nb;a.z/=this.nc;return a},"JU.P3");c(c$,"toCartesian",function(a,b){null!=this.matrixFractionalToCartesian&&(b?this.matrixFtoCNoOffset:this.matrixFractionalToCartesian).rotTrans(a)},"JU.T3,~B");c(c$,"toFractional",function(a,b){null!=this.matrixCartesianToFractional&&(b?this.matrixCtoFANoOffset:this.matrixCartesianToFractional).rotTrans(a)},"JU.T3,~B");c(c$,"isPolymer",function(){return 1==this.dimension});c(c$,"isSlab",function(){return 2==this.dimension});
c(c$,"getNotionalUnitCell",function(){return this.notionalUnitcell});c(c$,"getUnitCellAsArray",function(a){var b=this.matrixFractionalToCartesian;return a?[b.m00,b.m10,b.m20,b.m01,b.m11,b.m21,b.m02,b.m12,b.m22]:[this.a,this.b,this.c,this.alpha,this.beta,this.gamma,b.m00,b.m10,b.m20,b.m01,b.m11,b.m21,b.m02,b.m12,b.m22,this.dimension,this.volume]},"~B");c(c$,"getInfo",function(a){switch(a){case 0:return this.a;case 1:return this.b;case 2:return this.c;case 3:return this.alpha;case 4:return this.beta;
case 5:return this.gamma;case 6:return this.dimension}return NaN},"~N");c$.ijkToPoint3f=c(c$,"ijkToPoint3f",function(a,b,c){var f=1E9<a?1E3:1E6<a?100:10,g=f*f;c-=0<=c?x(5*f/10):c;b.x=x(a/g)%f+c;b.y=x(a%g/f)+c;b.z=a%f+c},"~N,JU.P3,~N");c$.getCellWeight=c(c$,"getCellWeight",function(a){var b=1;0==a.x&&(b/=2);0==a.y&&(b/=2);0==a.z&&(b/=2);return b},"JU.P3");C(c$,"toRadians",0.017453292,"INFO_DIMENSIONS",6,"INFO_GAMMA",5,"INFO_BETA",4,"INFO_ALPHA",3,"INFO_C",2,"INFO_B",1,"INFO_A",0)}),u("JU"),v(null,
"JU.TempArray",["java.lang.Boolean","$.Float","JU.P3","$.P3i"],function(){c$=s(function(){this.freeEnum=this.lengthsFreeEnum=this.freeScreens=this.lengthsFreeScreens=this.freePoints=this.lengthsFreePoints=null;p(this,arguments)},JU,"TempArray");N(c$,function(){this.lengthsFreePoints=E(6,0);this.freePoints=Array(6);this.lengthsFreeScreens=E(6,0);this.freeScreens=Array(6);this.lengthsFreeEnum=E(2,0);this.freeEnum=Array(2)});t(c$,function(){});c(c$,"clear",function(){this.clearTempPoints();this.clearTempScreens()});
c$.findBestFit=c(c$,"findBestFit",function(a,b){for(var c=-1,f=2147483647,g=b.length;0<=--g;){var e=b[g];e>=a&&e<f&&(f=e,c=g)}0<=c&&(b[c]=0);return c},"~N,~A");c$.findShorter=c(c$,"findShorter",function(a,b){for(var c=b.length;0<=--c;)if(0==b[c])return b[c]=a,c;for(var f=0,g=b[0],c=b.length;0<--c;)b[c]<g&&(g=b[c],f=c);return g<a?(b[f]=a,f):-1},"~N,~A");c(c$,"clearTempPoints",function(){for(var a=0;6>a;a++)this.lengthsFreePoints[a]=0,this.freePoints[a]=null});c(c$,"allocTempPoints",function(a){var b;
b=JU.TempArray.findBestFit(a,this.lengthsFreePoints);if(0<b)b=this.freePoints[b];else for(b=Array(a);0<=--a;)b[a]=new JU.P3;return b},"~N");c(c$,"freeTempPoints",function(a){for(var b=0;b<this.freePoints.length;b++)if(this.freePoints[b]===a){this.lengthsFreePoints[b]=a.length;return}b=JU.TempArray.findShorter(a.length,this.lengthsFreePoints);0<=b&&(this.freePoints[b]=a)},"~A");c(c$,"clearTempScreens",function(){for(var a=0;6>a;a++)this.lengthsFreeScreens[a]=0,this.freeScreens[a]=null});c(c$,"allocTempScreens",
function(a){var b;b=JU.TempArray.findBestFit(a,this.lengthsFreeScreens);if(0<b)b=this.freeScreens[b];else for(b=Array(a);0<=--a;)b[a]=new JU.P3i;return b},"~N");c(c$,"freeTempScreens",function(a){for(var b=0;b<this.freeScreens.length;b++)if(this.freeScreens[b]===a){this.lengthsFreeScreens[b]=a.length;return}b=JU.TempArray.findShorter(a.length,this.lengthsFreeScreens);0<=b&&(this.freeScreens[b]=a)},"~A");c(c$,"allocTempEnum",function(a){var b=JU.TempArray.findBestFit(a,this.lengthsFreeEnum);return 0<
b?this.freeEnum[b]:Array(a)},"~N");c(c$,"freeTempEnum",function(a){for(var b=0;b<this.freeEnum.length;b++)if(this.freeEnum[b]===a){this.lengthsFreeEnum[b]=a.length;return}b=JU.TempArray.findShorter(a.length,this.lengthsFreeEnum);0<=b&&(this.freeEnum[b]=a)},"~A");c$.getSlabWithinRange=c(c$,"getSlabWithinRange",function(a,b){return[Integer.$valueOf(1073742114),[Float.$valueOf(a),Float.$valueOf(b)],Boolean.FALSE,null]},"~N,~N");c$.getSlabObjectType=c(c$,"getSlabObjectType",function(a,b,c,f){return[Integer.$valueOf(a),
b,Boolean.$valueOf(c),f]},"~N,~O,~B,~O");C(c$,"freePointsSize",6,"freeScreensSize",6,"freeEnumSize",2)}),u("JU"),v(null,"JU.Txt",["JU.P3","$.PT","JU.Escape"],function(){c$=A(JU,"Txt");c$.formatText=c(c$,"formatText",function(a,b){var c;if(0>b.indexOf("@{")&&0>b.indexOf("%{"))return b;var f=b,g=0<=f.indexOf("\\");g&&(f=JU.PT.rep(f,"\\%","\u0001"),f=JU.PT.rep(f,"\\@","\u0002"),g=!f.equals(b));for(var f=JU.PT.rep(f,"%{","@{"),e;0<=(c=f.indexOf("@{"));){c++;var h=c+1;e=f.length;for(var j=1,k="\x00",n=
"\x00";0<j&&++c<e;){var m=f.charAt(c);if("\x00"!=k)"\\"==n?m="\x00":m==k&&(k="\x00"),n=m;else switch(m){case "'":case '"':k=m;break;case "{":j++;break;case "}":j--}}if(c>=e)return f;e=f.substring(h,c);if(0==e.length)return f;e=a.evaluateExpression(e);q(e,JU.P3)&&(e=JU.Escape.eP(e));f=f.substring(0,h-2)+e.toString()+f.substring(c+1)}g&&(f=JU.PT.rep(f,"\u0002","@"),f=JU.PT.rep(f,"\u0001","%"));return f},"J.api.JmolViewer,~S")}),u("JU"),v(["JU.V3"],"JU.Vibration",null,function(){c$=s(function(){this.modDim=
-1;this.modScale=NaN;p(this,arguments)},JU,"Vibration",JU.V3);c(c$,"setTempPoint",function(a,b,c){switch(this.modDim){case -2:break;default:a.scaleAdd2(Math.cos(6.283185307179586*b.x)*c,this,a)}},"JU.T3,JU.T3,~N,~N");c(c$,"getInfo",function(a){a.put("vibVector",JU.V3.newV(this));a.put("vibType",-2==this.modDim?"spin":-1==this.modDim?"vib":"mod")},"java.util.Map");j(c$,"clone",function(){var a=new JU.Vibration;a.setT(this);a.modDim=this.modDim;return a});c(c$,"setXYZ",function(a){this.setT(a)},"JU.T3");
c(c$,"setType",function(a){this.modDim=a;return this},"~N");c(c$,"isNonzero",function(){return 0!=this.x||0!=this.y||0!=this.z});C(c$,"twoPI",6.283185307179586,"TYPE_VIBRATION",-1,"TYPE_SPIN",-2)}),u("JV"),v(["javajs.api.EventManager","J.i18n.GT","JU.Rectangle","JV.MouseState"],["JV.ActionManager","$.Gesture","$.MotionPoint"],"java.lang.Character $.Float JU.P3 $.PT J.api.Interface J.thread.HoverWatcherThread JU.BSUtil $.Escape $.Logger $.Point3fi JV.binding.Binding $.JmolBinding".split(" "),function(){c$=
s(function(){this.vwr=null;this.isMultiTouch=this.haveMultiTouchInput=!1;this.predragBinding=this.rasmolBinding=this.dragBinding=this.pfaatBinding=this.jmolBinding=this.b=null;this.LEFT_DRAGGED=this.LEFT_CLICKED=0;this.dragGesture=this.hoverWatcherThread=null;this.apm=1;this.pickingStyleSelect=this.pickingStyle=this.bondPickingMode=0;this.pickingStyleMeasure=5;this.rootPickingStyle=0;this.pickAtomAssignType="C";this.pickBondAssignType="p";this.isPickAtomAssignCharge=!1;this.xyRange=0;this.mouseDragFactor=
this.gestureSwipeFactor=1;this.mouseWheelFactor=1.15;this.dragged=this.pressed=this.clicked=this.moved=this.current=null;this.clickedCount=this.pressedCount=0;this.dragSelectedMode=this.labelMode=this.drawMode=!1;this.measuresEnabled=!0;this.hoverActive=this.haveSelection=!1;this.mp=null;this.dragAtomIndex=-1;this.rubberbandSelectionMode=!1;this.rectRubber=null;this.isAltKeyReleased=!0;this.isMultiTouchServer=this.isMultiTouchClient=this.keyProcessing=!1;this.clickAction=this.dragAction=this.pressAction=
0;this.measurementQueued=null;this.selectionWorking=!1;p(this,arguments)},JV,"ActionManager",null,javajs.api.EventManager);N(c$,function(){this.current=new JV.MouseState("current");this.moved=new JV.MouseState("moved");this.clicked=new JV.MouseState("clicked");this.pressed=new JV.MouseState("pressed");this.dragged=new JV.MouseState("dragged");this.rectRubber=new JU.Rectangle});c(c$,"setViewer",function(a){this.vwr=a;this.setBinding(this.jmolBinding=new JV.binding.JmolBinding);this.LEFT_CLICKED=JV.binding.Binding.getMouseAction(1,
16,2);this.LEFT_DRAGGED=JV.binding.Binding.getMouseAction(1,16,1);this.dragGesture=new JV.Gesture(20,a)},"JV.Viewer,~S");c(c$,"checkHover",function(){if(!this.vwr.getInMotion(!0)&&!this.vwr.tm.spinOn&&!this.vwr.tm.navOn&&!this.vwr.checkObjectHovered(this.current.x,this.current.y)){var a=this.vwr.findNearestAtomIndex(this.current.x,this.current.y);if(!(0>a)){var b=2==this.getAtomPickingMode()&&this.bnd(JV.binding.Binding.getMouseAction(this.clickedCount,this.moved.modifiers,1),10);this.vwr.hoverOn(a,
b)}}});c(c$,"processMultitouchEvent",function(){},"~N,~N,~N,~N,JU.P3,~N");c(c$,"bnd",function(a,b){return this.b.isBound(a,b)},"~N,~N");c(c$,"bind",function(a,b){var c=JV.ActionManager.getActionFromName(b),f=JV.binding.Binding.getMouseActionStr(a);0!=f&&(0<=c?this.b.bindAction(f,c):this.b.bindName(f,b))},"~S,~S");c(c$,"clearBindings",function(){this.setBinding(this.jmolBinding=new JV.binding.JmolBinding);this.rasmolBinding=this.dragBinding=this.pfaatBinding=null});c(c$,"unbindAction",function(a,b){if(null==
a&&null==b)this.clearBindings();else{var c=JV.ActionManager.getActionFromName(b),f=JV.binding.Binding.getMouseActionStr(a);0<=c?this.b.unbindAction(f,c):0!=f&&this.b.unbindName(f,b);null==b&&this.b.unbindUserAction(a)}},"~S,~S");c$.newAction=c(c$,"newAction",function(a,b,c){JV.ActionManager.actionInfo[a]=c;JV.ActionManager.actionNames[a]=b},"~N,~S,~S");c$.getActionName=c(c$,"getActionName",function(a){return a<JV.ActionManager.actionNames.length?JV.ActionManager.actionNames[a]:null},"~N");c$.getActionFromName=
c(c$,"getActionFromName",function(a){for(var b=0;b<JV.ActionManager.actionNames.length;b++)if(JV.ActionManager.actionNames[b].equalsIgnoreCase(a))return b;return-1},"~S");c(c$,"getBindingInfo",function(a){return this.b.getBindingInfo(JV.ActionManager.actionInfo,JV.ActionManager.actionNames,a)},"~S");c(c$,"setBinding",function(a){this.b=a},"JV.binding.Binding");c$.getPickingModeName=c(c$,"getPickingModeName",function(a){return 0>a||a>=JV.ActionManager.pickingModeNames.length?"off":JV.ActionManager.pickingModeNames[a]},
"~N");c$.getPickingMode=c(c$,"getPickingMode",function(a){for(var b=JV.ActionManager.pickingModeNames.length;0<=--b;)if(a.equalsIgnoreCase(JV.ActionManager.pickingModeNames[b]))return b;return-1},"~S");c$.getPickingStyleName=c(c$,"getPickingStyleName",function(a){return 0>a||a>=JV.ActionManager.pickingStyleNames.length?"toggle":JV.ActionManager.pickingStyleNames[a]},"~N");c$.getPickingStyleIndex=c(c$,"getPickingStyleIndex",function(a){for(var b=JV.ActionManager.pickingStyleNames.length;0<=--b;)if(a.equalsIgnoreCase(JV.ActionManager.pickingStyleNames[b]))return b;
return-1},"~S");c(c$,"getAtomPickingMode",function(){return this.apm});c(c$,"setPickingMode",function(a){var b=!1;switch(a){case -1:b=!0;this.bondPickingMode=35;a=1;break;case 35:case 34:case 33:this.vwr.setBooleanProperty("bondPicking",!0);this.bondPickingMode=a;return;case 8:this.bondPickingMode=a;if(this.vwr.getBondPicking())return;b=!0}b=(new Boolean(b|this.apm!=a)).valueOf();this.apm=a;b&&this.resetMeasurement()},"~N");c(c$,"setAtomPickingOption",function(a){switch(this.apm){case 32:this.pickAtomAssignType=
a,this.isPickAtomAssignCharge=this.pickAtomAssignType.equals("Pl")||this.pickAtomAssignType.equals("Mi")}},"~S");c(c$,"setBondPickingOption",function(a){switch(this.bondPickingMode){case 33:this.pickBondAssignType=Character.toLowerCase(a.charAt(0))}},"~S");c(c$,"getPickingState",function(){var a=";set modelkitMode "+this.vwr.getBoolean(603979883)+";set picking "+JV.ActionManager.getPickingModeName(this.apm);32==this.apm&&(a+="_"+this.pickAtomAssignType);a+=";";0!=this.bondPickingMode&&(a+="set picking "+
JV.ActionManager.getPickingModeName(this.bondPickingMode));33==this.bondPickingMode&&(a+="_"+this.pickBondAssignType);return a+";"});c(c$,"getPickingStyle",function(){return this.pickingStyle});c(c$,"setPickingStyle",function(a){this.pickingStyle=a;4<=a?(this.pickingStyleMeasure=a,this.resetMeasurement()):(3>a&&(this.rootPickingStyle=a),this.pickingStyleSelect=a);this.rubberbandSelectionMode=!1;switch(this.pickingStyleSelect){case 2:this.b.name.equals("extendedSelect")||this.setBinding(null==this.pfaatBinding?
this.pfaatBinding=JV.binding.Binding.newBinding(this.vwr,"Pfaat"):this.pfaatBinding);break;case 3:this.b.name.equals("drag")||this.setBinding(null==this.dragBinding?this.dragBinding=JV.binding.Binding.newBinding(this.vwr,"Drag"):this.dragBinding);this.rubberbandSelectionMode=!0;break;case 1:this.b.name.equals("selectOrToggle")||this.setBinding(null==this.rasmolBinding?this.rasmolBinding=JV.binding.Binding.newBinding(this.vwr,"Rasmol"):this.rasmolBinding);break;default:this.b!==this.jmolBinding&&this.setBinding(this.jmolBinding)}this.b.name.equals("drag")||
(this.predragBinding=this.b)},"~N");c(c$,"setGestureSwipeFactor",function(a){this.gestureSwipeFactor=a},"~N");c(c$,"setMouseDragFactor",function(a){this.mouseDragFactor=a},"~N");c(c$,"setMouseWheelFactor",function(a){this.mouseWheelFactor=a},"~N");c(c$,"setCurrent",function(a,b,c,f){this.vwr.hoverOff();this.current.set(a,b,c,f)},"~N,~N,~N,~N");c(c$,"getCurrentX",function(){return this.current.x});c(c$,"getCurrentY",function(){return this.current.y});c(c$,"setMouseMode",function(){this.drawMode=this.labelMode=
!1;this.dragSelectedMode=this.vwr.getDragSelected();this.measuresEnabled=!this.dragSelectedMode;if(!this.dragSelectedMode)switch(this.apm){default:return;case 32:this.measuresEnabled=!this.isPickAtomAssignCharge;return;case 4:this.drawMode=!0;this.measuresEnabled=!1;break;case 2:this.labelMode=!0;this.measuresEnabled=!1;break;case 9:this.measuresEnabled=!1;break;case 19:case 22:case 20:case 21:this.measuresEnabled=!1;return}this.exitMeasurementMode(null)});c(c$,"clearMouseInfo",function(){this.pressedCount=
this.clickedCount=0;this.dragGesture.setAction(0,0);this.exitMeasurementMode(null)});c(c$,"isMTClient",function(){return this.isMultiTouchClient});c(c$,"isMTServer",function(){return this.isMultiTouchServer});c(c$,"dispose",function(){this.clear()});c(c$,"clear",function(){this.startHoverWatcher(!1);null!=this.predragBinding&&(this.b=this.predragBinding);this.vwr.setPickingMode(null,1);this.vwr.setPickingStyle(null,this.rootPickingStyle);this.isAltKeyReleased=!0});c(c$,"startHoverWatcher",function(a){if(!this.vwr.isPreviewOnly)try{a?
null==this.hoverWatcherThread&&(this.current.time=-1,this.hoverWatcherThread=new J.thread.HoverWatcherThread(this,this.current,this.moved,this.vwr)):null!=this.hoverWatcherThread&&(this.current.time=-1,this.hoverWatcherThread.interrupt(),this.hoverWatcherThread=null)}catch(b){if(!B(b,Exception))throw b;}},"~B");c(c$,"setModeMouse",function(a){-1==a&&this.startHoverWatcher(!1)},"~N");j(c$,"keyPressed",function(a,b){if(this.keyProcessing)return!1;this.vwr.hoverOff();this.keyProcessing=!0;switch(a){case 18:this.dragSelectedMode&&
this.isAltKeyReleased&&this.vwr.moveSelected(-2147483648,0,-2147483648,-2147483648,-2147483648,null,!1,!1);this.isAltKeyReleased=!1;this.moved.modifiers|=8;break;case 16:this.dragged.modifiers|=1;this.moved.modifiers|=1;break;case 17:this.moved.modifiers|=2;break;case 27:this.exitMeasurementMode("escape")}var c=8464|this.moved.modifiers;!this.labelMode&&!this.b.isUserAction(c)&&this.checkMotionRotateZoom(c,this.current.x,0,0,!1);if(this.vwr.getBoolean(603979887))switch(a){case 38:case 40:case 37:case 39:case 32:case 46:this.vwr.navigate(a,
b)}this.keyProcessing=!1;return!0},"~N,~N");j(c$,"keyReleased",function(a){switch(a){case 18:this.dragSelectedMode&&this.vwr.moveSelected(2147483647,0,-2147483648,-2147483648,-2147483648,null,!1,!1);this.isAltKeyReleased=!0;this.moved.modifiers&=-9;break;case 16:this.moved.modifiers&=-2;break;case 17:this.moved.modifiers&=-3}0==this.moved.modifiers&&this.vwr.setCursor(0);if(this.vwr.getBoolean(603979887))switch(a){case 38:case 40:case 37:case 39:this.vwr.navigate(0,0)}},"~N");j(c$,"mouseEnterExit",
function(a,b,c){this.setCurrent(a,b,c,0)},"~N,~N,~N,~B");c(c$,"setMouseActions",function(a,b,c){this.pressAction=JV.binding.Binding.getMouseAction(a,b,c?5:4);this.dragAction=JV.binding.Binding.getMouseAction(a,b,1);this.clickAction=JV.binding.Binding.getMouseAction(a,b,2)},"~N,~N,~B");j(c$,"mouseAction",function(a,b,c,f,g,e){if(this.vwr.getMouseEnabled())switch(JU.Logger.debuggingHigh&&0!=a&&this.vwr.showString("mouse action: "+a+" "+e+" "+JV.binding.Binding.getMouseActionName(JV.binding.Binding.getMouseAction(g,
e,a),!1),!1),a){case 0:this.setCurrent(b,c,f,e);this.moved.setCurrent(this.current,0);if(null!=this.mp||this.hoverActive){this.clickAction=JV.binding.Binding.getMouseAction(this.clickedCount,e,0);this.checkClickAction(c,f,b,0);break}if(this.isZoomArea(c)){this.checkMotionRotateZoom(this.LEFT_DRAGGED,0,0,0,!1);break}8==this.vwr.currentCursor&&this.vwr.setCursor(0);break;case 4:this.setMouseMode();this.pressedCount=this.pressed.check(20,c,f,e,b,700)?this.pressedCount+1:1;1==this.pressedCount&&(this.vwr.checkInMotion(1),
this.setCurrent(b,c,f,e));this.pressAction=JV.binding.Binding.getMouseAction(this.pressedCount,e,4);this.vwr.setCursor(12);this.pressed.setCurrent(this.current,1);this.dragged.setCurrent(this.current,1);this.vwr.setFocus();this.dragGesture.setAction(this.dragAction,b);this.checkPressedAction(c,f,b);break;case 1:this.setMouseMode();this.setMouseActions(this.pressedCount,e,!1);a=c-this.dragged.x;g=f-this.dragged.y;this.setCurrent(b,c,f,e);this.dragged.setCurrent(this.current,-1);this.dragGesture.add(this.dragAction,
c,f,b);this.checkDragWheelAction(this.dragAction,c,f,a,g,b,1);break;case 5:this.setMouseActions(this.pressedCount,e,!0);this.setCurrent(b,c,f,e);this.vwr.spinXYBy(0,0,0);e=!this.pressed.check(this.xyRange,c,f,e,b,9223372036854775E3);this.checkReleaseAction(c,f,b,e);break;case 3:if(this.vwr.isApplet&&!this.vwr.hasFocus())break;this.setCurrent(b,this.current.x,this.current.y,e);this.checkDragWheelAction(JV.binding.Binding.getMouseAction(0,e,3),this.current.x,this.current.y,0,f,b,3);break;case 2:this.setMouseMode();
this.clickedCount=1<g?g:this.clicked.check(0,0,0,e,b,700)?this.clickedCount+1:1;1==this.clickedCount&&this.setCurrent(b,c,f,e);this.setMouseActions(this.clickedCount,e,!1);this.clicked.setCurrent(this.current,this.clickedCount);this.vwr.setFocus();if(9!=this.apm&&this.bnd(JV.binding.Binding.getMouseAction(1,e,4),31))break;this.clickAction=JV.binding.Binding.getMouseAction(this.clickedCount,e,2);this.checkClickAction(c,f,b,this.clickedCount)}},"~N,~N,~N,~N,~N,~N");c(c$,"checkPressedAction",function(a,
b,c){var f=JV.binding.Binding.getButtonMods(this.pressAction),g=this.bnd(JV.binding.Binding.getMouseAction(1,f,4),31);if(0!=f){this.pressAction=this.vwr.notifyMouseClicked(a,b,this.pressAction,4);if(0==this.pressAction)return;f=JV.binding.Binding.getButtonMods(this.pressAction)}this.setMouseActions(this.pressedCount,f,!1);JU.Logger.debugging&&JU.Logger.debug(JV.binding.Binding.getMouseActionName(this.pressAction,!1));if(this.drawMode&&(this.bnd(this.dragAction,8)||this.bnd(this.dragAction,9))||this.labelMode&&
this.bnd(this.dragAction,10))this.vwr.checkObjectDragged(-2147483648,0,a,b,this.dragAction);else{this.checkUserAction(this.pressAction,a,b,0,0,c,4);c=!1;switch(this.apm){case 32:c=this.bnd(this.clickAction,0);break;case 28:c=this.bnd(this.dragAction,7)||this.bnd(this.dragAction,14);break;case 26:case 36:case 27:c=this.bnd(this.dragAction,7)||this.bnd(this.dragAction,27)||this.bnd(this.dragAction,14);break;case 29:c=this.bnd(this.dragAction,11)||this.bnd(this.dragAction,14);break;case 30:c=this.bnd(this.dragAction,
12)||this.bnd(this.dragAction,27)||this.bnd(this.dragAction,14)}if(c){if(this.dragAtomIndex=this.vwr.findNearestAtomIndexMovable(a,b,!0),0<=this.dragAtomIndex&&(32==this.apm||31==this.apm)&&this.vwr.ms.isAtomAssignable(this.dragAtomIndex))this.enterMeasurementMode(this.dragAtomIndex),this.mp.addPoint(this.dragAtomIndex,null,!1)}else this.bnd(this.pressAction,23)?(g="j",this.vwr.getBoolean(603979883)&&(g=this.vwr.checkObjectClicked(a,b,this.LEFT_CLICKED),g=null!=g&&"bond".equals(g.get("type"))?"b":
0<=this.vwr.findNearestAtomIndex(a,b)?"a":"m"),this.vwr.popupMenu(a,b,g)):this.dragSelectedMode?(this.haveSelection=!0,g&&(this.haveSelection=0<=this.vwr.findNearestAtomIndexMovable(a,b,!0)),this.haveSelection&&(this.bnd(this.dragAction,13)||this.bnd(this.dragAction,14))&&this.vwr.moveSelected(-2147483648,0,-2147483648,-2147483648,-2147483648,null,!1,!1)):this.checkMotionRotateZoom(this.dragAction,a,0,0,!0)}},"~N,~N,~N");c(c$,"checkDragWheelAction",function(a,b,c,f,g,e,h){var j=JV.binding.Binding.getButtonMods(a);
if(0!=j){j=this.vwr.notifyMouseClicked(b,c,JV.binding.Binding.getMouseAction(this.pressedCount,j,h),h);if(0==j)return;0<j&&(a=j)}if(this.isRubberBandSelect(a))this.calcRectRubberBand(),this.vwr.refresh(3,"rubberBand selection");else if(!this.checkUserAction(a,b,c,f,g,e,h)){if(0<=this.vwr.getRotateBondIndex()){if(this.bnd(a,26)){this.vwr.moveSelected(f,g,-2147483648,b,c,null,!1,!1);return}this.bnd(a,25)||this.vwr.setRotateBondIndex(-1)}e=null;if(0<=this.dragAtomIndex)switch(this.apm){case 26:this.setMotion(13,
!0);this.bnd(a,27)&&this.vwr.getBoolean(603979785)?this.vwr.rotateSelected(this.getDegrees(f,!0),this.getDegrees(g,!1),null):this.vwr.moveSelected(f,g,this.bnd(a,14)?-g:-2147483648,-2147483648,-2147483648,null,!0,!1);return;case 36:case 27:case 30:e=this.vwr.ms.getAtoms(3145754,JU.BSUtil.newAndSetBit(this.dragAtomIndex)),36==this.apm&&e.and(this.vwr.getAtomBitSet("ligand"));case 28:case 29:1==this.dragGesture.getPointCount()&&this.vwr.undoMoveActionClear(this.dragAtomIndex,2,!0);this.setMotion(13,
!0);if(this.bnd(a,27))this.vwr.rotateSelected(this.getDegrees(f,!0),this.getDegrees(g,!1),e);else{switch(this.apm){case 36:case 27:case 30:this.vwr.select(e,!1,0,!0)}this.vwr.moveAtomWithHydrogens(this.dragAtomIndex,f,g,this.bnd(a,14)?-g:-2147483648,e)}return}0<=this.dragAtomIndex&&1==h&&this.bnd(this.clickAction,0)&&32==this.apm?(a=this.vwr.findNearestAtomIndexMovable(b,c,!1),0<=a?(null!=this.mp?this.mp.setCount(1):this.measuresEnabled&&this.enterMeasurementMode(a),this.addToMeasurement(a,null,!0),
this.mp.colix=20):null!=this.mp&&(this.mp.setCount(1),this.mp.colix=23),null!=this.mp&&(this.mp.traceX=b,this.mp.traceY=c,this.vwr.refresh(3,"assignNew"))):!this.drawMode&&!this.labelMode&&this.bnd(a,45)?this.vwr.translateXYBy(f,g):this.dragSelectedMode&&this.haveSelection&&(this.bnd(a,13)||this.bnd(a,27))?(b=this.vwr.bsA().nextSetBit(0),0>b||(1==this.dragGesture.getPointCount()?this.vwr.undoMoveActionClear(b,2,!0):this.vwr.moveSelected(2147483647,0,-2147483648,-2147483648,-2147483648,null,!1,!1),
this.setMotion(13,!0),this.bnd(a,27)&&this.vwr.getBoolean(603979785)?this.vwr.rotateSelected(this.getDegrees(f,!0),this.getDegrees(g,!1),null):this.vwr.moveSelected(f,g,-2147483648,-2147483648,-2147483648,null,!0,!1))):this.drawMode&&(this.bnd(a,8)||this.bnd(a,9))||this.labelMode&&this.bnd(a,10)?(this.setMotion(13,!0),this.vwr.checkObjectDragged(this.dragged.x,this.dragged.y,b,c,a)):this.checkMotionRotateZoom(a,b,f,g,!0)?this.vwr.tm.slabEnabled&&this.checkSlideZoom(a)?this.vwr.slabDepthByPixels(g):
this.vwr.zoomBy(g):this.bnd(a,25)?this.vwr.rotateXYBy(this.getDegrees(f,!0),this.getDegrees(g,!1)):this.bnd(a,29)?0==f&&1<Math.abs(g)?(this.setMotion(8,!0),this.vwr.zoomBy(g+(0<g?-1:1))):0==g&&1<Math.abs(f)&&(this.setMotion(13,!0),this.vwr.rotateZBy(-f+(0<f?1:-1),2147483647,2147483647)):this.bnd(a,46)?this.zoomByFactor(g,2147483647,2147483647):this.bnd(a,28)?(this.setMotion(13,!0),this.vwr.rotateZBy(-f,2147483647,2147483647)):this.vwr.tm.slabEnabled&&(this.bnd(a,6)?this.vwr.depthByPixels(g):this.bnd(a,
38)?this.vwr.slabByPixels(g):this.bnd(a,39)&&this.vwr.slabDepthByPixels(g))}},"~N,~N,~N,~N,~N,~N,~N");c(c$,"checkReleaseAction",function(a,b,c,f){JU.Logger.debugging&&JU.Logger.debug(JV.binding.Binding.getMouseActionName(this.pressAction,!1));this.vwr.checkInMotion(0);this.vwr.setInMotion(!1);this.vwr.setCursor(0);this.dragGesture.add(this.dragAction,a,b,c);f&&this.vwr.setRotateBondIndex(-2147483648);0<=this.dragAtomIndex&&(29==this.apm||30==this.apm)&&this.minimize(!0);if(32==this.apm&&this.bnd(this.clickAction,
0))null==this.mp||0>this.dragAtomIndex||this.assignNew(a,b);else if(this.dragAtomIndex=-1,this.isRubberBandSelect(this.dragAction)&&this.selectRb(this.clickAction),this.rubberbandSelectionMode=this.b.name.equals("drag"),this.rectRubber.x=2147483647,f&&this.vwr.notifyMouseClicked(a,b,JV.binding.Binding.getMouseAction(this.pressedCount,0,5),5),this.drawMode&&(this.bnd(this.dragAction,8)||this.bnd(this.dragAction,9))||this.labelMode&&this.bnd(this.dragAction,10))this.vwr.checkObjectDragged(2147483647,
0,a,b,this.dragAction);else if(this.dragSelectedMode&&(this.bnd(this.dragAction,13)&&this.haveSelection)&&this.vwr.moveSelected(2147483647,0,-2147483648,-2147483648,-2147483648,null,!1,!1),(!f||!this.checkUserAction(this.pressAction,a,b,0,0,c,5))&&this.vwr.getBoolean(603979780)&&this.bnd(this.dragAction,44))a=this.getExitRate(),0<a&&this.vwr.spinXYBy(this.dragGesture.getDX(4,2),this.dragGesture.getDY(4,2),30*a*this.gestureSwipeFactor),this.vwr.g.logGestures&&this.vwr.log("$NOW$ swipe "+this.dragGesture+
" "+a)},"~N,~N,~N,~B");c(c$,"checkClickAction",function(a,b,c,f){if(0<f){if(this.checkUserAction(this.clickAction,a,b,0,0,c,32768))return;this.clickAction=this.vwr.notifyMouseClicked(a,b,this.clickAction,32768);if(0==this.clickAction)return}JU.Logger.debugging&&JU.Logger.debug(JV.binding.Binding.getMouseActionName(this.clickAction,!1));if(this.bnd(this.clickAction,2)){if(this.vwr.frankClicked(a,b)){this.vwr.popupMenu(-a,b,"j");return}if(this.vwr.frankClickedModelKit(a,b)){this.vwr.popupMenu(0,0,"m");
return}}c=null;var g=!1,e=!1,h=null;this.drawMode||(h=this.vwr.checkObjectClicked(a,b,this.clickAction),null!=h&&(g="bond".equals(h.get("type")),e="isosurface".equals(h.get("type")),c=this.getPoint(h)));g&&(f=1);if(!(null!=c&&Float.isNaN(c.x))){var j=this.findNearestAtom(a,b,c,0<f);if(0==f&&32!=this.apm)null!=this.mp&&((null!=c||0==this.mp.getIndexOf(j))&&this.mp.addPoint(j,c,!1),this.mp.haveModified&&this.vwr.setPendingMeasurement(this.mp),this.vwr.refresh(3,"measurementPending"));else if(this.setMouseMode(),
this.bnd(this.clickAction,43)&&this.vwr.tm.stopMotion(),this.vwr.getBoolean(603979887)&&23==this.apm&&this.bnd(this.clickAction,21))this.vwr.navTranslatePercent(100*a/this.vwr.getScreenWidth()-50,100*b/this.vwr.getScreenHeight()-50);else{if(g){if(this.bnd(this.clickAction,34==this.bondPickingMode||33==this.bondPickingMode?0:5)){this.bondPicked(h.get("index").intValue());return}}else{if(e)return;if(32!=this.apm&&null!=this.mp&&this.bnd(this.clickAction,20)){this.atomOrPointPicked(j,c);4==this.addToMeasurement(j,
c,!1)&&this.toggleMeasurement();return}if(this.bnd(this.clickAction,37)){null!=this.mp?(this.addToMeasurement(j,c,!0),this.toggleMeasurement()):!this.drawMode&&(!this.labelMode&&!this.dragSelectedMode&&this.measuresEnabled)&&(this.enterMeasurementMode(j),this.addToMeasurement(j,c,!0));this.atomOrPointPicked(j,c);return}}this.isSelectAction(this.clickAction)?e||this.atomOrPointPicked(j,c):this.bnd(this.clickAction,24)&&0>j&&this.reset()}}},"~N,~N,~N,~N");c(c$,"checkUserAction",function(a,b,c,f,g,e,
h){if(!this.b.isUserAction(a))return!1;for(var j=!1,k,n=this.b.getBindings(),m=a+"\t",r,p=n.keySet().iterator();p.hasNext()&&((r=p.next())||1);)if(0==r.indexOf(m)&&JU.PT.isAS(k=n.get(r))){var q=k[1],s=null;if(0<=q.indexOf("_ATOM")){var t=this.findNearestAtom(b,c,null,!0),q=JU.PT.rep(q,"_ATOM","({"+(0<=t?""+t:"")+"})");0<=t&&(q=JU.PT.rep(q,"_POINT",JU.Escape.eP(this.vwr.ms.at[t])))}if(!this.drawMode&&(0<=q.indexOf("_POINT")||0<=q.indexOf("_OBJECT")||0<=q.indexOf("_BOND"))){t=this.vwr.checkObjectClicked(b,
c,a);if(null!=t&&null!=(s=t.get("pt")))t.get("type").equals("bond")&&(q=JU.PT.rep(q,"_BOND","[{"+t.get("index")+"}]")),q=JU.PT.rep(q,"_POINT",JU.Escape.eP(s)),q=JU.PT.rep(q,"_OBJECT",JU.Escape.escapeMap(t));q=JU.PT.rep(q,"_BOND","[{}]");q=JU.PT.rep(q,"_OBJECT","{}")}q=JU.PT.rep(q,"_POINT","{}");q=JU.PT.rep(q,"_ACTION",""+a);q=JU.PT.rep(q,"_X",""+b);q=JU.PT.rep(q,"_Y",""+(this.vwr.getScreenHeight()-c));q=JU.PT.rep(q,"_DELTAX",""+f);q=JU.PT.rep(q,"_DELTAY",""+g);q=JU.PT.rep(q,"_TIME",""+e);q=JU.PT.rep(q,
"_MODE",""+h);q.startsWith("+:")&&(j=!0,q=q.substring(2));this.vwr.evalStringQuiet(q)}return!j},"~N,~N,~N,~N,~N,~N,~N");c(c$,"checkMotionRotateZoom",function(a,b,c,f,g){b=this.checkSlideZoom(a);var e=this.bnd(a,25),h=this.bnd(a,29);if(!b&&!e&&!h)return!1;a=(c=h&&(0==c||Math.abs(f)>5*Math.abs(c)))||this.isZoomArea(this.moved.x)||this.bnd(a,46)?8:e||h?13:this.bnd(a,1)?12:0;this.setMotion(a,g);return c||b},"~N,~N,~N,~N,~B");c(c$,"getExitRate",function(){var a=this.dragGesture.getTimeDifference(2);return this.isMultiTouch?
80<a?0:this.dragGesture.getSpeedPixelsPerMillisecond(2,1):10<a?0:this.dragGesture.getSpeedPixelsPerMillisecond(4,2)});c(c$,"isRubberBandSelect",function(a){a=a&-8193|32768;return this.rubberbandSelectionMode&&(this.bnd(a,35)||this.bnd(a,34)||this.bnd(a,32))},"~N");c(c$,"getRubberBand",function(){return this.rubberbandSelectionMode&&2147483647!=this.rectRubber.x?this.rectRubber:null});c(c$,"calcRectRubberBand",function(){var a=this.vwr.antialiased?2:1;this.current.x<this.pressed.x?(this.rectRubber.x=
this.current.x*a,this.rectRubber.width=(this.pressed.x-this.current.x)*a):(this.rectRubber.x=this.pressed.x*a,this.rectRubber.width=(this.current.x-this.pressed.x)*a);this.current.y<this.pressed.y?(this.rectRubber.y=this.current.y*a,this.rectRubber.height=(this.pressed.y-this.current.y)*a):(this.rectRubber.y=this.pressed.y*a,this.rectRubber.height=(this.current.y-this.pressed.y)*a)});c(c$,"getDegrees",function(a,b){return 180*(a/Math.min(500,b?this.vwr.getScreenWidth():this.vwr.getScreenHeight()))*
this.mouseDragFactor},"~N,~B");c(c$,"checkSlideZoom",function(a){return this.bnd(a,40)&&this.isZoomArea(this.pressed.x)},"~N");c(c$,"isZoomArea",function(a){return a>98*this.vwr.getScreenWidth()*(this.vwr.isStereoDouble()?2:1)/100},"~N");c(c$,"getPoint",function(a){var b=new JU.Point3fi;b.setT(a.get("pt"));b.mi=a.get("modelIndex").intValue();return b},"java.util.Map");c(c$,"findNearestAtom",function(a,b,c,f){a=this.drawMode||null!=c?-1:this.vwr.findNearestAtomIndexMovable(a,b,!1);return 0<=a&&(f||
null==this.mp)&&!this.vwr.slm.isInSelectionSubset(a)?-1:a},"~N,~N,JU.Point3fi,~B");c(c$,"isSelectAction",function(a){return this.bnd(a,17)||!this.drawMode&&!this.labelMode&&1==this.apm&&this.bnd(a,1)||this.dragSelectedMode&&(this.bnd(this.dragAction,27)||this.bnd(this.dragAction,13))||this.bnd(a,22)||this.bnd(a,35)||this.bnd(a,32)||this.bnd(a,34)||this.bnd(a,36)||this.bnd(a,30)},"~N");c(c$,"enterMeasurementMode",function(a){this.vwr.setPicked(-1);this.vwr.setPicked(a);this.vwr.setCursor(1);this.vwr.setPendingMeasurement(this.mp=
this.getMP());this.measurementQueued=this.mp},"~N");c(c$,"getMP",function(){return J.api.Interface.getInterface("JM.MeasurementPending",this.vwr,"mouse").set(this.vwr.ms)});c(c$,"addToMeasurement",function(a,b,c){if(-1==a&&null==b||null==this.mp)return this.exitMeasurementMode(null),0;var f=this.mp.count;-2147483648!=this.mp.traceX&&2==f&&this.mp.setCount(f=1);return 4==f&&!c?f:this.mp.addPoint(a,b,!0)},"~N,JU.Point3fi,~B");c(c$,"resetMeasurement",function(){this.exitMeasurementMode(null);this.measurementQueued=
this.getMP()});c(c$,"exitMeasurementMode",function(a){null!=this.mp&&(this.vwr.setPendingMeasurement(this.mp=null),this.vwr.setCursor(0),null!=a&&this.vwr.refresh(3,a))},"~S");c(c$,"getSequence",function(){var a=this.measurementQueued.getAtomIndex(1),b=this.measurementQueued.getAtomIndex(2);if(!(0>a||0>b))try{var c=this.vwr.getSmilesOpt(null,a,b,!1,!0,!1,!1,!1);this.vwr.setStatusMeasuring("measureSequence",-2,c,0)}catch(f){if(B(f,Exception))JU.Logger.error(f.toString());else throw f;}});c(c$,"minimize",
function(a){var b=this.dragAtomIndex;a&&(this.dragAtomIndex=-1);this.vwr.dragMinimizeAtom(b)},"~B");c(c$,"queueAtom",function(a,b){var c=this.measurementQueued.addPoint(a,b,!0);0<=a&&this.vwr.setStatusAtomPicked(a,"Atom #"+c+":"+this.vwr.getAtomInfo(a),null);return c},"~N,JU.Point3fi");c(c$,"setMotion",function(a,b){switch(this.vwr.currentCursor){case 3:break;default:this.vwr.setCursor(a)}b&&this.vwr.setInMotion(!0)},"~N,~B");c(c$,"zoomByFactor",function(a,b,c){0!=a&&(this.setMotion(8,!0),this.vwr.zoomByFactor(Math.pow(this.mouseWheelFactor,
a),b,c),this.vwr.setInMotion(!1))},"~N,~N,~N");c(c$,"runScript",function(a){this.vwr.script(a)},"~S");c(c$,"atomOrPointPicked",function(a,b){if(0>a){this.resetMeasurement();if(this.bnd(this.clickAction,33)){this.runScript("select none");return}if(5!=this.apm&&6!=this.apm)return}var c=2;switch(this.apm){case 28:case 29:return;case 0:return;case 25:case 24:case 8:var f=8==this.apm,c=25==this.apm;if(!this.bnd(this.clickAction,f?5:3))return;if(null==this.measurementQueued||0==this.measurementQueued.count||
2<this.measurementQueued.count)this.resetMeasurement(),this.enterMeasurementMode(a);this.addToMeasurement(a,b,!0);if(2!=this.queueAtom(a,b))return;f=f||this.measurementQueued.isConnected(this.vwr.ms.at,2)?" DELETE":c?"STRUTS":"";this.runScript("connect "+this.measurementQueued.getMeasurementScript(" ",!0)+f);this.resetMeasurement();return;case 21:c++;case 20:c++;case 18:case 19:case 22:if(!this.bnd(this.clickAction,20))return;if(null==this.measurementQueued||0==this.measurementQueued.count||this.measurementQueued.count>
c)this.resetMeasurement(),this.enterMeasurementMode(a);this.addToMeasurement(a,b,!0);this.queueAtom(a,b);f=this.measurementQueued.count;1==f&&(this.vwr.setPicked(-1),this.vwr.setPicked(a));if(f<c)return;22==this.apm?this.getSequence():(this.vwr.setStatusMeasuring("measurePicked",c,this.measurementQueued.getStringDetail(),this.measurementQueued.value),(18==this.apm||4==this.pickingStyleMeasure)&&this.runScript("measure "+this.measurementQueued.getMeasurementScript(" ",!0)));this.resetMeasurement();
return}f=null!=this.mp&&1!=this.apm?1:this.apm;switch(f){case 3:if(!this.bnd(this.clickAction,17))return;null==b?this.zoomTo(a):this.runScript("zoomTo "+JU.Escape.eP(b));return;case 5:case 6:this.bnd(this.clickAction,17)&&this.checkTwoAtomAction(b,a)}if(null==b){switch(f){case 1:!this.drawMode&&!this.labelMode&&this.bnd(this.clickAction,1)?this.zoomTo(a):this.bnd(this.clickAction,17)&&this.vwr.setStatusAtomPicked(a,null,null);return;case 2:this.bnd(this.clickAction,19)&&(this.runScript("set labeltoggle {atomindex="+
a+"}"),this.vwr.setStatusAtomPicked(a,null,null));return;case 31:if(this.bnd(this.clickAction,0)){var c=this.vwr.getAtomBitSet("connected(atomIndex="+a+") and !within(SMARTS,'[r50,R]')"),g=c.cardinality();switch(g){case 0:case 1:return;case 3:case 4:for(var e=E(g,0),h=E(g,0),j=0,f=c.nextSetBit(0);0<=f;f=c.nextSetBit(f+1),j++)e[j]=this.vwr.getBranchBitSet(f,a,!0).cardinality(),h[j]=f;for(j=0;j<g-2;j++){for(var k=-2147483648,n=0,f=0;f<g;f++)e[f]>=k&&c.get(h[f])&&(n=h[f],k=e[f]);c.clear(n)}}this.vwr.undoMoveActionClear(a,
2,!0);this.vwr.invertSelected(null,null,a,c);this.vwr.setStatusAtomPicked(a,"inverted: "+JU.Escape.eBS(c),null)}return;case 7:this.bnd(this.clickAction,4)&&(c=JU.BSUtil.newAndSetBit(a),this.vwr.deleteAtoms(c,!1),this.vwr.setStatusAtomPicked(a,"deleted: "+JU.Escape.eBS(c),null));return}f="atomindex="+a;switch(this.apm){default:return;case 9:this.selectAtoms(f);break;case 10:this.selectAtoms("within(group, "+f+")");break;case 11:this.selectAtoms("within(chain, "+f+")");break;case 13:this.selectAtoms("within(polymer, "+
f+")");break;case 14:this.selectAtoms("within(structure, "+f+")");break;case 12:this.selectAtoms("within(molecule, "+f+")");break;case 16:this.selectAtoms("within(model, "+f+")");break;case 17:this.selectAtoms("visible and within(element, "+f+")");break;case 15:this.selectAtoms("visible and within(site, "+f+")")}this.vwr.clearClickCount();this.vwr.setStatusAtomPicked(a,null,null)}},"~N,JU.Point3fi");c(c$,"assignNew",function(a,b){if(2==this.mp.count)this.vwr.undoMoveActionClear(-1,4146,!0),this.runScript("assign connect "+
this.mp.getMeasurementScript(" ",!1));else if(this.pickAtomAssignType.equals("Xx"))this.exitMeasurementMode("bond dropped");else if(this.pressed.inRange(this.xyRange,this.dragged.x,this.dragged.y)){var c="assign atom ({"+this.dragAtomIndex+'}) "'+this.pickAtomAssignType+'"';this.isPickAtomAssignCharge?(c+=";{atomindex="+this.dragAtomIndex+"}.label='%C'; ",this.vwr.undoMoveActionClear(this.dragAtomIndex,4,!0)):this.vwr.undoMoveActionClear(-1,4146,!0);this.runScript(c)}else this.isPickAtomAssignCharge||
(this.vwr.undoMoveActionClear(-1,4146,!0),c=this.vwr.ms.at[this.dragAtomIndex],1==c.getElementNumber()?this.runScript("assign atom ({"+this.dragAtomIndex+'}) "X"'):(c=JU.P3.new3(a,b,c.sZ),this.vwr.tm.unTransformPoint(c,c),this.runScript("assign atom ({"+this.dragAtomIndex+'}) "'+this.pickAtomAssignType+'" '+JU.Escape.eP(c))));this.exitMeasurementMode(null)},"~N,~N");c(c$,"bondPicked",function(a){33==this.bondPickingMode&&this.vwr.undoMoveActionClear(-1,4146,!0);switch(this.bondPickingMode){case 33:this.runScript("assign bond [{"+
a+'}] "'+this.pickBondAssignType+'"');break;case 34:this.vwr.setRotateBondIndex(a);break;case 8:this.vwr.deleteBonds(JU.BSUtil.newAndSetBit(a))}},"~N");c(c$,"checkTwoAtomAction",function(a,b){var c=5==this.apm;if(this.vwr.tm.spinOn||this.vwr.tm.navOn||null!=this.vwr.getPendingMeasurement())this.resetMeasurement(),this.vwr.tm.spinOn&&this.runScript("spin off");else{2<=this.measurementQueued.count&&this.resetMeasurement();var f=this.measurementQueued.count;if(1==f)if(null==a){if(this.measurementQueued.getAtomIndex(1)==
b)return}else if(0==this.measurementQueued.getAtom(1).distance(a))return;if(0<=b||null!=a)f=this.queueAtom(b,a);2>f?c?this.vwr.scriptStatus(1==f?J.i18n.GT._("pick one more atom in order to spin the model around an axis"):J.i18n.GT._("pick two atoms in order to spin the model around an axis")):this.vwr.scriptStatus(1==f?J.i18n.GT._("pick one more atom in order to display the symmetry relationship"):J.i18n.GT._("pick two atoms in order to display the symmetry relationship between them")):(f=this.measurementQueued.getMeasurementScript(" ",
!1),c?this.runScript("spin"+f+" "+this.vwr.getInt(553648157)):this.runScript("draw symop"+f+";show symop"+f))}},"JU.Point3fi,~N");c(c$,"reset",function(){this.runScript("!reset")});c(c$,"selectAtoms",function(a){if(!(null!=this.mp||this.selectionWorking)){this.selectionWorking=!0;var b=this.rubberbandSelectionMode||this.bnd(this.clickAction,35)?"selected and not ("+a+") or (not selected) and ":this.bnd(this.clickAction,32)?"selected and not ":this.bnd(this.clickAction,34)?"selected or ":0==this.clickAction||
this.bnd(this.clickAction,36)?"selected tog ":this.bnd(this.clickAction,30)?"":null;if(null!=b)try{var c=this.vwr.getAtomBitSetEval(null,b+("("+a+")"));this.vwr.select(c,!1,0,!1);this.vwr.refresh(3,"selections set")}catch(f){if(!B(f,Exception))throw f;}this.selectionWorking=!1}},"~S");c(c$,"selectRb",function(a){var b=this.vwr.ms.findAtomsInRectangle(this.rectRubber);0<b.length()&&(b=JU.Escape.eBS(b),this.bnd(a,34)?this.runScript("selectionHalos on;select selected or "+b):this.bnd(a,32)?this.runScript("selectionHalos on;select selected and not "+
b):this.runScript("selectionHalos on;select selected tog "+b));this.vwr.refresh(3,"mouseReleased")},"~N");c(c$,"toggleMeasurement",function(){if(null!=this.mp){var a=this.mp.count;2<=a&&4>=a&&this.runScript("!measure "+this.mp.getMeasurementScript(" ",!0));this.exitMeasurementMode(null)}});c(c$,"zoomTo",function(a){this.runScript("zoomTo (atomindex="+a+")");this.vwr.setStatusAtomPicked(a,null,null)},"~N");j(c$,"keyTyped",function(){return!1},"~N,~N");C(c$);c$.actionInfo=c$.prototype.actionInfo=Array(47);c$.actionNames=c$.prototype.actionNames=Array(47);JV.ActionManager.newAction(0,"_assignNew",J.i18n.GT.o(J.i18n.GT._("assign/new atom or bond (requires {0})"),"set picking assignAtom_??/assignBond_?"));JV.ActionManager.newAction(1,"_center",J.i18n.GT._("center"));JV.ActionManager.newAction(2,"_clickFrank",J.i18n.GT._("pop up recent context menu (click on Jmol frank)"));JV.ActionManager.newAction(4,"_deleteAtom",
J.i18n.GT.o(J.i18n.GT._("delete atom (requires {0})"),"set picking DELETE ATOM"));JV.ActionManager.newAction(5,"_deleteBond",J.i18n.GT.o(J.i18n.GT._("delete bond (requires {0})"),"set picking DELETE BOND"));JV.ActionManager.newAction(6,"_depth",J.i18n.GT.o(J.i18n.GT._("adjust depth (back plane; requires {0})"),"SLAB ON"));JV.ActionManager.newAction(7,"_dragAtom",J.i18n.GT.o(J.i18n.GT._("move atom (requires {0})"),"set picking DRAGATOM"));JV.ActionManager.newAction(8,"_dragDrawObject",J.i18n.GT.o(J.i18n.GT._("move whole DRAW object (requires {0})"),
"set picking DRAW"));JV.ActionManager.newAction(9,"_dragDrawPoint",J.i18n.GT.o(J.i18n.GT._("move specific DRAW point (requires {0})"),"set picking DRAW"));JV.ActionManager.newAction(10,"_dragLabel",J.i18n.GT.o(J.i18n.GT._("move label (requires {0})"),"set picking LABEL"));JV.ActionManager.newAction(11,"_dragMinimize",J.i18n.GT.o(J.i18n.GT._("move atom and minimize molecule (requires {0})"),"set picking DRAGMINIMIZE"));JV.ActionManager.newAction(12,"_dragMinimizeMolecule",J.i18n.GT.o(J.i18n.GT._("move and minimize molecule (requires {0})"),
"set picking DRAGMINIMIZEMOLECULE"));JV.ActionManager.newAction(13,"_dragSelected",J.i18n.GT.o(J.i18n.GT._("move selected atoms (requires {0})"),"set DRAGSELECTED"));JV.ActionManager.newAction(14,"_dragZ",J.i18n.GT.o(J.i18n.GT._("drag atoms in Z direction (requires {0})"),"set DRAGSELECTED"));JV.ActionManager.newAction(15,"_multiTouchSimulation",J.i18n.GT._("simulate multi-touch using the mouse)"));JV.ActionManager.newAction(16,"_navTranslate",J.i18n.GT.o(J.i18n.GT._("translate navigation point (requires {0} and {1})"),
["set NAVIGATIONMODE","set picking NAVIGATE"]));JV.ActionManager.newAction(17,"_pickAtom",J.i18n.GT._("pick an atom"));JV.ActionManager.newAction(3,"_pickConnect",J.i18n.GT.o(J.i18n.GT._("connect atoms (requires {0})"),"set picking CONNECT"));JV.ActionManager.newAction(18,"_pickIsosurface",J.i18n.GT.o(J.i18n.GT._("pick an ISOSURFACE point (requires {0}"),"set DRAWPICKING"));JV.ActionManager.newAction(19,"_pickLabel",J.i18n.GT.o(J.i18n.GT._("pick a label to toggle it hidden/displayed (requires {0})"),
"set picking LABEL"));JV.ActionManager.newAction(20,"_pickMeasure",J.i18n.GT.o(J.i18n.GT._("pick an atom to include it in a measurement (after starting a measurement or after {0})"),"set picking DISTANCE/ANGLE/TORSION"));JV.ActionManager.newAction(21,"_pickNavigate",J.i18n.GT.o(J.i18n.GT._("pick a point or atom to navigate to (requires {0})"),"set NAVIGATIONMODE"));JV.ActionManager.newAction(22,"_pickPoint",J.i18n.GT.o(J.i18n.GT._("pick a DRAW point (for measurements) (requires {0}"),"set DRAWPICKING"));
JV.ActionManager.newAction(23,"_popupMenu",J.i18n.GT._("pop up the full context menu"));JV.ActionManager.newAction(24,"_reset",J.i18n.GT._("reset (when clicked off the model)"));JV.ActionManager.newAction(25,"_rotate",J.i18n.GT._("rotate"));JV.ActionManager.newAction(26,"_rotateBranch",J.i18n.GT.o(J.i18n.GT._("rotate branch around bond (requires {0})"),"set picking ROTATEBOND"));JV.ActionManager.newAction(27,"_rotateSelected",J.i18n.GT.o(J.i18n.GT._("rotate selected atoms (requires {0})"),"set DRAGSELECTED"));
JV.ActionManager.newAction(28,"_rotateZ",J.i18n.GT._("rotate Z"));JV.ActionManager.newAction(29,"_rotateZorZoom",J.i18n.GT._("rotate Z (horizontal motion of mouse) or zoom (vertical motion of mouse)"));JV.ActionManager.newAction(30,"_select",J.i18n.GT.o(J.i18n.GT._("select an atom (requires {0})"),"set pickingStyle EXTENDEDSELECT"));JV.ActionManager.newAction(31,"_selectAndDrag",J.i18n.GT.o(J.i18n.GT._("select and drag atoms (requires {0})"),"set DRAGSELECTED"));JV.ActionManager.newAction(32,"_selectAndNot",
J.i18n.GT.o(J.i18n.GT._("unselect this group of atoms (requires {0})"),"set pickingStyle DRAG/EXTENDEDSELECT"));JV.ActionManager.newAction(33,"_selectNone",J.i18n.GT.o(J.i18n.GT._("select NONE (requires {0})"),"set pickingStyle EXTENDEDSELECT"));JV.ActionManager.newAction(34,"_selectOr",J.i18n.GT.o(J.i18n.GT._("add this group of atoms to the set of selected atoms (requires {0})"),"set pickingStyle DRAG/EXTENDEDSELECT"));JV.ActionManager.newAction(35,"_selectToggle",J.i18n.GT.o(J.i18n.GT._("toggle selection (requires {0})"),
"set pickingStyle DRAG/EXTENDEDSELECT/RASMOL"));JV.ActionManager.newAction(36,"_selectToggleOr",J.i18n.GT.o(J.i18n.GT._("if all are selected, unselect all, otherwise add this group of atoms to the set of selected atoms (requires {0})"),"set pickingStyle DRAG"));JV.ActionManager.newAction(37,"_setMeasure",J.i18n.GT._("pick an atom to initiate or conclude a measurement"));JV.ActionManager.newAction(38,"_slab",J.i18n.GT.o(J.i18n.GT._("adjust slab (front plane; requires {0})"),"SLAB ON"));JV.ActionManager.newAction(39,
"_slabAndDepth",J.i18n.GT.o(J.i18n.GT._("move slab/depth window (both planes; requires {0})"),"SLAB ON"));JV.ActionManager.newAction(40,"_slideZoom",J.i18n.GT._("zoom (along right edge of window)"));JV.ActionManager.newAction(41,"_spinDrawObjectCCW",J.i18n.GT.o(J.i18n.GT._("click on two points to spin around axis counterclockwise (requires {0})"),"set picking SPIN"));JV.ActionManager.newAction(42,"_spinDrawObjectCW",J.i18n.GT.o(J.i18n.GT._("click on two points to spin around axis clockwise (requires {0})"),
"set picking SPIN"));JV.ActionManager.newAction(43,"_stopMotion",J.i18n.GT.o(J.i18n.GT._("stop motion (requires {0})"),"set waitForMoveTo FALSE"));JV.ActionManager.newAction(44,"_swipe",J.i18n.GT._("spin model (swipe and release button and stop motion simultaneously)"));JV.ActionManager.newAction(45,"_translate",J.i18n.GT._("translate"));JV.ActionManager.newAction(46,"_wheelZoom",J.i18n.GT._("zoom"));C(c$);JV.ActionManager.pickingModeNames="off identify label center draw spin symmetry deleteatom deletebond atom group chain molecule polymer structure site model element measure distance angle torsion sequence navigate connect struts dragselected dragmolecule dragatom dragminimize dragminimizemolecule invertstereo assignatom assignbond rotatebond identifybond dragligand".$plit(" ");C(c$,"pickingStyleNames",null);JV.ActionManager.pickingStyleNames="toggle selectOrToggle extendedSelect drag measure measureoff".$plit(" ");
C(c$,"MAX_DOUBLE_CLICK_MILLIS",700,"MININUM_GESTURE_DELAY_MILLISECONDS",10,"SLIDE_ZOOM_X_PERCENT",98,"DEFAULT_MOUSE_DRAG_FACTOR",1,"DEFAULT_MOUSE_WHEEL_FACTOR",1.15,"DEFAULT_GESTURE_SWIPE_FACTOR",1);c$=s(function(){this.time=this.y=this.x=this.index=0;p(this,arguments)},JV,"MotionPoint");c(c$,"set",function(a,b,c,f){this.index=a;this.x=b;this.y=c;this.time=f},"~N,~N,~N,~N");j(c$,"toString",function(){return"[x = "+this.x+" y = "+this.y+" time = "+this.time+" ]"});c$=s(function(){this.action=0;this.nodes=
null;this.time0=this.ptNext=0;this.vwr=null;p(this,arguments)},JV,"Gesture");t(c$,function(a,b){this.vwr=b;this.nodes=Array(a);for(var c=0;c<a;c++)this.nodes[c]=new JV.MotionPoint},"~N,JV.Viewer");c(c$,"setAction",function(a,b){this.action=a;this.ptNext=0;this.time0=b;for(var c=0;c<this.nodes.length;c++)this.nodes[c].index=-1},"~N,~N");c(c$,"add",function(a,b,c,f){this.action=a;this.getNode(this.ptNext).set(this.ptNext,b,c,f-this.time0);this.ptNext++;return this.ptNext},"~N,~N,~N,~N");c(c$,"getTimeDifference",
function(a){a=this.getPointCount2(a,0);if(2>a)return 0;var b=this.getNode(this.ptNext-1);a=this.getNode(this.ptNext-a);return b.time-a.time},"~N");c(c$,"getSpeedPixelsPerMillisecond",function(a,b){a=this.getPointCount2(a,b);if(2>a)return 0;var c=this.getNode(this.ptNext-1-b),f=this.getNode(this.ptNext-a-b),g=360*((c.x-f.x)/this.vwr.getScreenWidth()),e=360*((c.y-f.y)/this.vwr.getScreenHeight());return Math.sqrt(g*g+e*e)/(c.time-f.time)},"~N,~N");c(c$,"getDX",function(a,b){a=this.getPointCount2(a,b);
if(2>a)return 0;var c=this.getNode(this.ptNext-1-b),f=this.getNode(this.ptNext-a-b);return c.x-f.x},"~N,~N");c(c$,"getDY",function(a,b){a=this.getPointCount2(a,b);if(2>a)return 0;var c=this.getNode(this.ptNext-1-b),f=this.getNode(this.ptNext-a-b);return c.y-f.y},"~N,~N");c(c$,"getPointCount",function(){return this.ptNext});c(c$,"getPointCount2",function(a,b){a>this.nodes.length-b&&(a=this.nodes.length-b);for(var c=a+1;0<=--c&&!(0<=this.getNode(this.ptNext-c-b).index););return c},"~N,~N");c(c$,"getNode",
function(a){return this.nodes[(a+this.nodes.length+this.nodes.length)%this.nodes.length]},"~N");j(c$,"toString",function(){return 0==this.nodes.length?""+this:JV.binding.Binding.getMouseActionName(this.action,!1)+" nPoints = "+this.ptNext+" "+this.nodes[0]})}),u("JV"),v(["JU.BS"],"JV.AnimationManager",["J.api.Interface","JU.BSUtil"],function(){c$=s(function(){this.vwr=this.animationThread=null;this.animationOn=!1;this.lastFrameDelayMs=this.firstFrameDelayMs=this.animationFps=0;this.bsVisibleModels=
null;this.animationReplayMode=1073742070;this.animationFrames=this.bsDisplay=null;this.animationPaused=this.isMovie=!1;this.morphCount=this.caf=this.cmi=0;this.currentDirection=this.animationDirection=1;this.frameStep=this.lastFrameIndex=this.firstFrameIndex=0;this.backgroundModelIndex=-1;this.firstFrameDelay=this.currentMorphModel=0;this.lastFrameDelay=1;this.intAnimThread=this.lastModelPainted=this.lastFramePainted=0;this.cai=-1;p(this,arguments)},JV,"AnimationManager");N(c$,function(){this.bsVisibleModels=
new JU.BS});t(c$,function(a){this.vwr=a},"JV.Viewer");c(c$,"setAnimationOn",function(a){a!=this.animationOn&&(!a||this.vwr.headless?this.stopThread(!1):(this.vwr.tm.spinOn||this.vwr.refresh(3,"Anim:setAnimationOn"),this.setAnimationRange(-1,-1),this.resumeAnimation()))},"~B");c(c$,"stopThread",function(a){var b=!1;null!=this.animationThread&&(this.animationThread.interrupt(),this.animationThread=null,b=!0);this.animationPaused=a;b&&!this.vwr.tm.spinOn&&this.vwr.refresh(3,"Viewer:setAnimationOff");
this.animation(!1);this.vwr.setStatusFrameChanged(!1,!0)},"~B");c(c$,"setAnimationNext",function(){return this.setAnimationRelative(this.animationDirection)});c(c$,"currentIsLast",function(){return this.isMovie?this.lastFramePainted==this.caf:this.lastModelPainted==this.cmi});c(c$,"currentFrameIs",function(a){var b=this.cmi;return 0==this.morphCount?b==a:0.001>Math.abs(this.currentMorphModel-a)},"~N");c(c$,"clear",function(){this.setMovie(null);this.initializePointers(0);this.setAnimationOn(!1);this.setModel(0,
!0);this.currentDirection=1;this.cai=-1;this.setAnimationDirection(1);this.setAnimationFps(10);this.setAnimationReplayMode(1073742070,0,0);this.initializePointers(0)});c(c$,"getModelSpecial",function(a){switch(a){case -1:a=this.firstFrameIndex;break;case 0:if(0<this.morphCount)return"-"+(1+this.currentMorphModel);a=this.cmi;break;case 1:a=this.lastFrameIndex}return this.vwr.getModelNumberDotted(a)},"~N");c(c$,"setDisplay",function(a){this.bsDisplay=null==a||0==a.cardinality()?null:JU.BSUtil.copy(a)},
"JU.BS");c(c$,"setMorphCount",function(a){this.morphCount=this.isMovie?0:a},"~N");c(c$,"morph",function(a){var b=z(a);0.001>Math.abs(b-a)?a=b:0.999<Math.abs(b-a)&&(a=b+=1);a-=b;b-=1;if(0==a)this.currentMorphModel=b,this.setModel(b,!0);else{var c;this.setModel(b,!0);c=b+1;this.currentMorphModel=b+a;c==b||(0>c||0>b)||this.vwr.ms.morphTrajectories(b,c,a)}},"~N");c(c$,"setModel",function(a,b){0>a&&this.stopThread(!1);var c=this.cmi,f=this.vwr.ms,g=null==f?0:f.mc;if(1==g)this.cmi=a=0;else if(0>a||a>=g)a=
-1;var f=null,e=!1;if(this.cmi!=a){if(0<g){var g=this.vwr.ms,h=g.isJmolDataFrameForModel(a),j=g.isJmolDataFrameForModel(this.cmi);j&&g.setJmolDataFrame(null,-1,this.cmi);-1!=this.cmi&&this.vwr.saveModelOrientation();if(j||h)f=g.getJmolFrameType(a)+" "+a+" <--  "+this.cmi+" "+g.getJmolFrameType(this.cmi),e=g.getJmolDataSourceFrame(a)==g.getJmolDataSourceFrame(this.cmi)}this.cmi=a;null!=f&&(0<=a&&this.vwr.restoreModelOrientation(a),e&&(0<=f.indexOf("quaternion")||0>f.indexOf("plot")&&0>f.indexOf("ramachandran")&&
0>f.indexOf(" property "))&&this.vwr.restoreModelRotation(c))}this.setViewer(b)},"~N,~B");c(c$,"setBackgroundModelIndex",function(a){var b=this.vwr.ms;if(null==b||0>a||a>=b.mc)a=-1;this.backgroundModelIndex=a;0<=a&&this.vwr.ms.setTrajectory(a);this.vwr.setTainted(!0);this.setFrameRangeVisible()},"~N");c(c$,"initializePointers",function(a){this.firstFrameIndex=0;this.lastFrameIndex=(0==a?0:this.getFrameCount())-1;this.frameStep=a;this.vwr.setFrameVariables()},"~N");c(c$,"setAnimationDirection",function(a){this.animationDirection=
a},"~N");c(c$,"setAnimationFps",function(a){1>a&&(a=1);50<a&&(a=50);this.animationFps=a;this.vwr.setFrameVariables()},"~N");c(c$,"setAnimationReplayMode",function(a,b,c){this.firstFrameDelay=0<b?b:0;this.firstFrameDelayMs=z(1E3*this.firstFrameDelay);this.lastFrameDelay=0<c?c:0;this.lastFrameDelayMs=z(1E3*this.lastFrameDelay);this.animationReplayMode=a;this.vwr.setFrameVariables()},"~N,~N,~N");c(c$,"setAnimationRange",function(a,b){var c=this.getFrameCount();0>a&&(a=0);0>b&&(b=c);a>=c&&(a=c-1);b>=
c&&(b=c-1);this.currentMorphModel=this.firstFrameIndex=a;this.lastFrameIndex=b;this.frameStep=b<a?-1:1;this.rewindAnimation()},"~N,~N");c(c$,"pauseAnimation",function(){this.stopThread(!0)});c(c$,"reverseAnimation",function(){this.currentDirection=-this.currentDirection;this.animationOn||this.resumeAnimation()});c(c$,"repaintDone",function(){this.lastModelPainted=this.cmi;this.lastFramePainted=this.caf});c(c$,"resumeAnimation",function(){0>this.cmi&&this.setAnimationRange(this.firstFrameIndex,this.lastFrameIndex);
1>=this.getFrameCount()?this.animation(!1):(this.animation(!0),this.animationPaused=!1,null==this.animationThread&&(this.intAnimThread++,this.animationThread=J.api.Interface.getOption("thread.AnimationThread",this.vwr,"script"),this.animationThread.setManager(this,this.vwr,[this.firstFrameIndex,this.lastFrameIndex,this.intAnimThread]),this.animationThread.start()))});c(c$,"setAnimationLast",function(){this.setFrame(0<this.animationDirection?this.lastFrameIndex:this.firstFrameIndex)});c(c$,"rewindAnimation",
function(){this.setFrame(0<this.animationDirection?this.firstFrameIndex:this.lastFrameIndex);this.currentDirection=1;this.vwr.setFrameVariables()});c(c$,"setAnimationPrevious",function(){return this.setAnimationRelative(-this.animationDirection)});c(c$,"getAnimRunTimeSeconds",function(){var a=this.getFrameCount();if(this.firstFrameIndex==this.lastFrameIndex||0>this.lastFrameIndex||0>this.firstFrameIndex||this.lastFrameIndex>=a||this.firstFrameIndex>=a)return 0;for(var b=Math.min(this.firstFrameIndex,
this.lastFrameIndex),a=Math.max(this.firstFrameIndex,this.lastFrameIndex),c=1*(a-b)/this.animationFps+this.firstFrameDelay+this.lastFrameDelay;b<=a;b++)c+=this.vwr.ms.getFrameDelayMs(this.modelIndexForFrame(b))/1E3;return c});c(c$,"setMovie",function(a){if(this.isMovie=null!=a&&null==a.get("scripts")){this.animationFrames=a.get("frames");if(null==this.animationFrames||0==this.animationFrames.length)this.isMovie=!1;else if(this.caf=a.get("currentFrame").intValue(),0>this.caf||this.caf>=this.animationFrames.length)this.caf=
0;this.setFrame(this.caf)}this.isMovie||(this.animationFrames=null);this.vwr.setBooleanProperty("_ismovie",this.isMovie);this.bsDisplay=null;this.currentMorphModel=this.morphCount=0},"java.util.Map");c(c$,"modelIndexForFrame",function(a){return this.isMovie?this.animationFrames[a]-1:a},"~N");c(c$,"getFrameCount",function(){return this.isMovie?this.animationFrames.length:this.vwr.ms.mc});c(c$,"setFrame",function(a){try{if(this.isMovie){var b=this.modelIndexForFrame(a);this.caf=a;a=b}else this.caf=
a;this.setModel(a,!0)}catch(c){if(!B(c,Exception))throw c;}},"~N");c(c$,"setViewer",function(a){this.vwr.ms.setTrajectory(this.cmi);this.vwr.tm.setFrameOffset(this.cmi);-1==this.cmi&&a&&this.setBackgroundModelIndex(-1);this.vwr.setTainted(!0);this.setFrameRangeVisible();this.vwr.setStatusFrameChanged(!1,!0);null!=this.vwr.ms&&!this.vwr.g.selectAllModels&&this.vwr.slm.setSelectionSubset(this.vwr.getModelUndeletedAtomsBitSet(this.cmi))},"~B");c(c$,"setFrameRangeVisible",function(){this.bsVisibleModels.clearAll();
0<=this.backgroundModelIndex&&this.bsVisibleModels.set(this.backgroundModelIndex);if(0<=this.cmi)this.bsVisibleModels.set(this.cmi);else if(0!=this.frameStep){for(var a=0,b=0,c=this.firstFrameIndex;c!=this.lastFrameIndex;c+=this.frameStep){var f=this.modelIndexForFrame(c);this.vwr.ms.isJmolDataFrameForModel(f)||(this.bsVisibleModels.set(f),a++,b=c)}f=this.modelIndexForFrame(this.lastFrameIndex);if(this.firstFrameIndex==this.lastFrameIndex||!this.vwr.ms.isJmolDataFrameForModel(f)||0==a)this.bsVisibleModels.set(f),
0==a&&(this.firstFrameIndex=this.lastFrameIndex),a=0;1==a&&0>this.cmi&&this.setFrame(b)}});c(c$,"animation",function(a){this.animationOn=a;this.vwr.setBooleanProperty("_animating",a)},"~B");c(c$,"setAnimationRelative",function(a){a=this.getFrameStep(a);var b=(this.isMovie?this.caf:this.cmi)+a,c=0,f=0,g;0<this.morphCount?(c=1/(this.morphCount+1),f=this.currentMorphModel+a*c,g=this.isNotInRange(f)):g=this.isNotInRange(b);if(g)switch(this.animationReplayMode){case 1073742070:return!1;case 528410:f=b=
this.animationDirection==this.currentDirection?this.firstFrameIndex:this.lastFrameIndex;break;case 1073742082:this.currentDirection=-this.currentDirection,b-=2*a,f-=2*a*c}if(1>this.morphCount){if(0>b||b>=this.getFrameCount())return!1;this.setFrame(b);return!0}this.morph(f+1);return!0},"~N");c(c$,"isNotInRange",function(a){var b=a-0.001;return b>this.firstFrameIndex&&b>this.lastFrameIndex||(b=a+0.001)<this.firstFrameIndex&&b<this.lastFrameIndex},"~N");c(c$,"getFrameStep",function(a){return this.frameStep*
a*this.currentDirection},"~N");C(c$,"FRAME_FIRST",-1,"FRAME_LAST",1,"MODEL_CURRENT",0)}),u("JV.binding"),v(["java.util.Hashtable"],"JV.binding.Binding","java.lang.Boolean java.util.Arrays JU.Lst $.PT $.SB J.api.Interface JU.Escape $.Logger".split(" "),function(){c$=s(function(){this.bindings=this.name=null;p(this,arguments)},JV.binding,"Binding");N(c$,function(){this.bindings=new java.util.Hashtable});c$.getMouseAction=c(c$,"getMouseAction",function(a,b,c){2<a&&(a=2);switch(a){case 0:break;case 1:a=
256;break;default:a=512}switch(c){case 4:c=4096;break;case 1:c=8192;break;case 5:c=16384;break;case 2:c=32768;break;case 3:c=32}return b&63|a|c},"~N,~N,~N");c$.getMouseActionStr=c(c$,"getMouseActionStr",function(a){if(null==a)return 0;var b=0;a=a.toUpperCase();b=0<=a.indexOf("MIDDLE")?8:0<=a.indexOf("RIGHT")?4:0<=a.indexOf("WHEEL")?32:16;0<=a.indexOf("DOWN")?b|=4096:0<=a.indexOf("DRAG")?b|=8192:0<=a.indexOf("UP")?b|=16384:32!=b&&(b|=32768);32!=b&&0<=a.indexOf("DOUBLE")?b|=512:0<b&&(b|=256);288!=b&&
0<=a.indexOf("ALT")&&(b|=8);0<=a.indexOf("CTRL")&&(b|=2);0<=a.indexOf("SHIFT")&&(b|=1);return b},"~S");c$.getButtonMods=c(c$,"getButtonMods",function(a){return a&63},"~N");c$.getClickCount=c(c$,"getClickCount",function(a){return(a&768)>>8},"~N");c$.getMouseActionName=c(c$,"getMouseActionName",function(a,b){var c=new JU.SB;if(0==a)return"";var f=JV.binding.Binding.includes(a,8)&&!JV.binding.Binding.includes(a,16)&&!JV.binding.Binding.includes(a,4),g="      ".toCharArray();JV.binding.Binding.includes(a,
2)&&(c.append("CTRL+"),g[5]="C");!f&&JV.binding.Binding.includes(a,8)&&(c.append("ALT+"),g[4]="A");JV.binding.Binding.includes(a,1)&&(c.append("SHIFT+"),g[3]="S");JV.binding.Binding.includes(a,16)?(g[2]="L",c.append("LEFT")):JV.binding.Binding.includes(a,4)?(g[2]="R",c.append("RIGHT")):f?(g[2]="M",c.append("MIDDLE")):JV.binding.Binding.includes(a,32)&&(g[2]="W",c.append("WHEEL"));JV.binding.Binding.includes(a,512)&&(c.append("+double"),g[1]="2");JV.binding.Binding.includes(a,4096)?(c.append("+down"),
g[0]="1"):JV.binding.Binding.includes(a,8192)?(c.append("+drag"),g[0]="2"):JV.binding.Binding.includes(a,16384)?(c.append("+up"),g[0]="3"):JV.binding.Binding.includes(a,32768)&&(c.append("+click"),g[0]="4");return b?String.instantialize(g)+":"+c.toString():c.toString()},"~N,~B");c(c$,"getBindings",function(){return this.bindings});t(c$,function(){});c(c$,"bindAction",function(a,b){this.addBinding(a+"\t"+b,[a,b])},"~N,~N");c(c$,"bindName",function(a,b){this.addBinding(a+"\t",Boolean.TRUE);this.addBinding(a+
"\t"+b,[JV.binding.Binding.getMouseActionName(a,!1),b])},"~N,~S");c(c$,"unbindAction",function(a,b){0==a?this.unbindJmolAction(b):this.removeBinding(null,a+"\t"+b)},"~N,~N");c(c$,"unbindName",function(a,b){null==b?this.unbindMouseAction(a):this.removeBinding(null,a+"\t"+b)},"~N,~S");c(c$,"unbindJmolAction",function(a){var b=this.bindings.keySet().iterator();for(a="\t"+a;b.hasNext();){var c=b.next();c.endsWith(a)&&this.removeBinding(b,c)}},"~N");c(c$,"addBinding",function(a,b){JU.Logger.debugging&&
JU.Logger.debug("adding binding "+a+"\t==\t"+JU.Escape.e(b));this.bindings.put(a,b)},"~S,~O");c(c$,"removeBinding",function(a,b){JU.Logger.debugging&&JU.Logger.debug("removing binding "+b);null==a?this.bindings.remove(b):a.remove()},"java.util.Iterator,~S");c(c$,"unbindUserAction",function(a){var b=this.bindings.keySet().iterator();for(a="\t"+a;b.hasNext();){var c=b.next();c.endsWith(a)&&this.removeBinding(b,c)}},"~S");c(c$,"unbindMouseAction",function(a){var b=this.bindings.keySet().iterator();for(a+=
"\t";b.hasNext();){var c=b.next();c.startsWith(a)&&this.removeBinding(b,c)}},"~N");c(c$,"isBound",function(a,b){return this.bindings.containsKey(a+"\t"+b)},"~N,~N");c(c$,"isUserAction",function(a){return this.bindings.containsKey(a+"\t")},"~N");c(c$,"getBindingInfo",function(a,b,c){var f=new JU.SB;c=null==c||c.equalsIgnoreCase("all")?null:c.toLowerCase();for(var g=Array(a.length),e=new JU.Lst,h,j=this.bindings.values().iterator();j.hasNext()&&((h=j.next())||1);)if(JU.PT.isAI(h)){var k=h,n=k[1];null==
g[n]&&(g[n]=new JU.Lst);k=JV.binding.Binding.getMouseActionName(k[0],!0);(null==c||0<=(b[n]+";"+a[n]+";"+k).toLowerCase().indexOf(c))&&g[n].addLast(k)}else JU.PT.isAS(h)&&(n=h[0],k=h[1],(null==c||0<=c.indexOf("user")||0<=n.indexOf(c)||0<=k.indexOf(c))&&e.addLast(h));for(n=0;n<a.length;n++){var m;null==g[n]||0==(m=g[n].size())||this.addInfo(f,g[n].toArray(Array(m)),b[n],a[n])}for(n=0;n<e.size();n++)k=e.get(n),this.addInfo(f,["USER:::"+k[0]],"user-defined",k[1]);return f.toString()},"~A,~A,~S");c(c$,
"addInfo",function(a,b,c,f){java.util.Arrays.sort(b);JU.PT.leftJustify(a,"                      ",c);a.append("\t");c="";for(var g=a.length(),e=0;e<b.length;e++)a.append(c).append(b[e].substring(7)),c=", ";g=a.length()-g;20>g&&a.append("                 ".substring(0,20-g));a.append("\t").append(f).appendC("\n")},"JU.SB,~A,~S,~S");c$.includes=c(c$,"includes",function(a,b){return(a&b)==b},"~N,~N");c$.newBinding=c(c$,"newBinding",function(a,b){return J.api.Interface.getInterface("JV.binding."+b+"Binding",
a,"script")},"JV.Viewer,~S");C(c$,"LEFT",16,"MIDDLE",8,"RIGHT",4,"WHEEL",32,"ALT",8,"CTRL",2,"SHIFT",1,"CTRL_ALT",10,"CTRL_SHIFT",3,"MAC_COMMAND",20,"BUTTON_MASK",28,"BUTTON_MODIFIER_MASK",63,"SINGLE",256,"DOUBLE",512,"COUNT_MASK",768,"DOWN",4096,"DRAG",8192,"UP",16384,"CLICK",32768,"MODE_MASK",61440)}),u("JV.binding"),v(["JV.binding.JmolBinding"],"JV.binding.DragBinding",null,function(){c$=A(JV.binding,"DragBinding",JV.binding.JmolBinding);t(c$,function(){K(this,JV.binding.DragBinding,[]);this.set("drag")});
j(c$,"setSelectBindings",function(){this.bindAction(33040,30);this.bindAction(33041,35);this.bindAction(33048,34);this.bindAction(33049,32);this.bindAction(4368,31);this.bindAction(8464,13);this.bindAction(33040,17)})}),u("JV.binding"),v(["JV.binding.Binding"],"JV.binding.JmolBinding",null,function(){c$=A(JV.binding,"JmolBinding",JV.binding.Binding);t(c$,function(){K(this,JV.binding.JmolBinding,[]);this.set("toggle")});c(c$,"set",function(a){this.name=a;this.setGeneralBindings();this.setSelectBindings()},
"~S");c(c$,"setSelectBindings",function(){this.bindAction(33296,30);this.bindAction(33040,36)});c(c$,"setGeneralBindings",function(){this.bindAction(8474,45);this.bindAction(8454,45);this.bindAction(8721,45);this.bindAction(8712,45);this.bindAction(8464,25);this.bindAction(8720,25);this.bindAction(8472,28);this.bindAction(8453,28);this.bindAction(8465,29);this.bindAction(8456,29);this.bindAction(288,46);this.bindAction(8464,40);this.bindAction(8464,16);this.bindAction(4370,23);this.bindAction(4356,
23);this.bindAction(33040,2);this.bindAction(8467,38);this.bindAction(8723,6);this.bindAction(8475,39);this.bindAction(8464,44);this.bindAction(8464,41);this.bindAction(8465,42);this.bindAction(8473,13);this.bindAction(8465,14);this.bindAction(8472,27);this.bindAction(8465,26);this.bindAction(8465,10);this.bindAction(8472,9);this.bindAction(8465,8);this.bindAction(33297,24);this.bindAction(33288,24);this.bindAction(33296,43);this.bindAction(8464,7);this.bindAction(8464,11);this.bindAction(8464,12);
this.bindAction(33040,17);this.bindAction(33040,22);this.bindAction(33040,19);this.bindAction(33040,20);this.bindAction(33296,37);this.bindAction(33040,18);this.bindAction(33043,21);this.bindAction(33040,4);this.bindAction(33040,5);this.bindAction(33040,3);this.bindAction(33040,0);this.bindAction(33043,1)})}),u("JV"),v(null,"JV.ColorManager","java.lang.Float JU.AU J.c.PAL JU.C $.ColorEncoder $.Elements $.Logger JV.JC".split(" "),function(){c$=s(function(){this.colorData=this.altArgbsCpk=this.argbsCpk=
this.g3d=this.vwr=this.ce=null;this.isDefaultColorRasmol=!1;this.colixRubberband=22;this.colixBackgroundContrast=0;p(this,arguments)},JV,"ColorManager");t(c$,function(a,b){this.vwr=a;this.ce=new JU.ColorEncoder(null,a);this.g3d=b;this.argbsCpk=J.c.PAL.argbsCpk;this.altArgbsCpk=JU.AU.arrayCopyRangeI(JV.JC.altArgbsCpk,0,-1)},"JV.Viewer,JU.GData");c(c$,"setDefaultColors",function(a){a?(this.isDefaultColorRasmol=!0,this.argbsCpk=JU.AU.arrayCopyI(JU.ColorEncoder.getRasmolScale(),-1)):(this.isDefaultColorRasmol=
!1,this.argbsCpk=J.c.PAL.argbsCpk);this.altArgbsCpk=JU.AU.arrayCopyRangeI(JV.JC.altArgbsCpk,0,-1);this.ce.createColorScheme(a?"Rasmol=":"Jmol=",!0,!0);for(a=J.c.PAL.argbsCpk.length;0<=--a;)this.g3d.changeColixArgb(a,this.argbsCpk[a]);for(a=JV.JC.altArgbsCpk.length;0<=--a;)this.g3d.changeColixArgb(JU.Elements.elementNumberMax+a,this.altArgbsCpk[a])},"~B");c(c$,"setRubberbandArgb",function(a){this.colixRubberband=0==a?0:JU.C.getColix(a)},"~N");c(c$,"setColixBackgroundContrast",function(a){this.colixBackgroundContrast=
JU.C.getBgContrast(a)},"~N");c(c$,"getColixBondPalette",function(a,b){switch(b){case 19:return this.ce.getColorIndexFromPalette(a.getEnergy(),-2.5,-0.5,7,!1)}return 10},"JM.Bond,~N");c(c$,"getColixAtomPalette",function(a,b){var c=0,f;f=this.vwr.ms;switch(b){case 84:return null==this.colorData||a.i>=this.colorData.length?12:this.ce.getColorIndex(this.colorData[a.i]);case 0:case 1:f=a.getAtomicAndIsotopeNumber();if(f<JU.Elements.elementNumberMax)return this.g3d.getChangeableColix(f,this.argbsCpk[f]);
c=f;f=JU.Elements.altElementIndexFromNumber(f);if(0<f)return this.g3d.getChangeableColix(JU.Elements.elementNumberMax+f,this.altArgbsCpk[f]);f=JU.Elements.getElementNumber(c);return this.g3d.getChangeableColix(f,this.argbsCpk[f]);case 2:return f=JU.ColorEncoder.quantize4(a.getPartialCharge(),-1,1,JV.JC.PARTIAL_CHARGE_RANGE_SIZE),this.g3d.getChangeableColix(JV.JC.PARTIAL_CHARGE_COLIX_RED+f,JV.JC.argbsRwbScale[f]);case 3:return f=a.getFormalCharge()- -4,this.g3d.getChangeableColix(JV.JC.FORMAL_CHARGE_COLIX_RED+
f,JV.JC.argbsFormalCharge[f]);case 68:case 5:return 68==b?(f=this.vwr.ms.getBfactor100Lo(),c=this.vwr.ms.getBfactor100Hi()):(f=0,c=1E4),this.ce.getColorIndexFromPalette(a.getBfactor100(),f,c,7,!1);case 86:return this.ce.getColorIndexFromPalette(a.getGroupParameter(1112539150),-1,1,7,!1);case 70:return c=this.vwr.ms.getSurfaceDistanceMax(),this.ce.getColorIndexFromPalette(a.getSurfaceDistance100(),0,c,7,!1);case 8:return this.ce.getColorIndexFromPalette(a.getGroupID(),0,0,5,!1);case 9:return this.ce.getColorIndexFromPalette(a.getGroupID(),
0,0,4,!1);case 75:return this.ce.getColorIndexFromPalette(a.getSelectedGroupIndexWithinChain(),0,a.getSelectedGroupCountWithinChain()-1,1,!1);case 87:return f=this.vwr.ms.am[a.mi],this.ce.getColorIndexFromPalette(a.getPolymerIndexInModel(),0,f.getBioPolymerCount()-1,1,!1);case 76:return this.ce.getColorIndexFromPalette(a.getSelectedMonomerIndexWithinPolymer(),0,a.getSelectedMonomerCountWithinPolymer()-1,1,!1);case 77:return this.ce.getColorIndexFromPalette(f.getMoleculeIndex(a.i,!0),0,f.getMoleculeCountInModel(a.mi)-
1,0,!1);case 14:return c=a.mi,this.ce.getColorIndexFromPalette(f.getAltLocIndexInModel(c,a.altloc),0,f.getAltLocCountInModel(c),0,!1);case 15:return c=a.mi,this.ce.getColorIndexFromPalette(f.getInsertionCodeIndexInModel(c,a.getInsertionCode()),0,f.getInsertionCountInModel(c),0,!1);case 16:f=a.getAtomicAndIsotopeNumber();c=this.getJmolOrRasmolArgb(f,1073741991);break;case 17:f=a.getAtomicAndIsotopeNumber();c=this.getJmolOrRasmolArgb(f,1073742116);break;case 7:c=a.getProteinStructureSubType().getColor();
break;case 10:f=a.getChainID(),null==JU.ColorEncoder.argbsChainAtom&&(JU.ColorEncoder.argbsChainAtom=this.getArgbs(1141899265),JU.ColorEncoder.argbsChainHetero=this.getArgbs(1613758470)),f=((0>f?0:256<=f?f-256:f)&31)%JU.ColorEncoder.argbsChainAtom.length,c=(a.isHetero()?JU.ColorEncoder.argbsChainHetero:JU.ColorEncoder.argbsChainAtom)[f]}return 0==c?22:JU.C.getColix(c)},"JM.Atom,~N");c(c$,"getArgbs",function(a){return this.vwr.getJBR().getArgbs(a)},"~N");c(c$,"getJmolOrRasmolArgb",function(a,b){switch(b){case 1073741991:if(a>=
JU.Elements.elementNumberMax)break;return this.ce.getArgbFromPalette(a,0,0,2);case 1073742116:if(a>=JU.Elements.elementNumberMax)break;return this.ce.getArgbFromPalette(a,0,0,3);default:return b}return JV.JC.altArgbsCpk[JU.Elements.altElementIndexFromNumber(a)]},"~N,~N");c(c$,"setElementArgb",function(a,b){1073741991==b&&this.argbsCpk===J.c.PAL.argbsCpk||(b=this.getJmolOrRasmolArgb(a,b),this.argbsCpk===J.c.PAL.argbsCpk&&(this.argbsCpk=JU.AU.arrayCopyRangeI(J.c.PAL.argbsCpk,0,-1),this.altArgbsCpk=
JU.AU.arrayCopyRangeI(JV.JC.altArgbsCpk,0,-1)),a<JU.Elements.elementNumberMax?(this.argbsCpk[a]=b,this.g3d.changeColixArgb(a,b)):(a=JU.Elements.altElementIndexFromNumber(a),this.altArgbsCpk[a]=b,this.g3d.changeColixArgb(JU.Elements.elementNumberMax+a,b)))},"~N,~N");c(c$,"getPropertyColorRange",function(){return this.ce.isReversed?[this.ce.hi,this.ce.lo]:[this.ce.lo,this.ce.hi]});c(c$,"setPropertyColorRangeData",function(a,b){this.colorData=a;this.ce.currentPalette=this.ce.createColorScheme(this.vwr.g.propertyColorScheme,
!0,!1);this.ce.hi=-3.4028235E38;this.ce.lo=3.4028235E38;if(null!=a){for(var c=null==b,f,g=c?a.length-1:b.nextSetBit(0);0<=g;g=c?g-1:b.nextSetBit(g+1))if(!Float.isNaN(f=a[g]))this.ce.hi=Math.max(this.ce.hi,f),this.ce.lo=Math.min(this.ce.lo,f);this.setPropertyColorRange(this.ce.lo,this.ce.hi)}},"~A,JU.BS");c(c$,"setPropertyColorRange",function(a,b){this.ce.setRange(a,b,a>b);JU.Logger.debugging&&JU.Logger.debug('ColorManager: color "'+this.ce.getCurrentColorSchemeName()+'" range '+a+" "+b)},"~N,~N");
c(c$,"setPropertyColorScheme",function(a,b,c){var f=0==a.length;f&&(a="=");var g=this.getPropertyColorRange();this.ce.currentPalette=this.ce.createColorScheme(a,!0,c);f||this.setPropertyColorRange(g[0],g[1]);this.ce.isTranslucent=b},"~S,~B,~B");c(c$,"getColorSchemeList",function(a){a=null==a||0==a.length?this.ce.currentPalette:this.ce.createColorScheme(a,!0,!1);return JU.ColorEncoder.getColorSchemeList(this.ce.getColorSchemeArray(a))},"~S");c(c$,"getColorEncoder",function(a){if(null==a||0==a.length)return this.ce;
var b=new JU.ColorEncoder(this.ce,this.vwr);b.currentPalette=b.createColorScheme(a,!1,!0);return 2147483647==b.currentPalette?null:b},"~S")}),u("JV"),v(["javajs.api.BytePoster","java.util.Hashtable"],"JV.FileManager","java.io.BufferedInputStream $.BufferedReader java.lang.Boolean java.net.URL $.URLEncoder java.util.Map JU.AU $.BArray $.Base64 $.Lst $.OC $.PT $.Rdr $.SB J.api.Interface J.io.FileReader $.JmolBinary JS.SV JU.Logger JV.Viewer".split(" "),function(){c$=s(function(){this.jmb=this.vwr=null;
this.pathForAllFiles="";this.nameAsGiven="zapped";this.lastFullPathName=this.fullPathName=null;this.lastNameAsGiven="zapped";this.cache=this.appletProxy=this.appletDocumentBaseURL=this.fileName=null;p(this,arguments)},JV,"FileManager",null,javajs.api.BytePoster);N(c$,function(){this.cache=new java.util.Hashtable});t(c$,function(a){this.vwr=a;this.jmb=new J.io.JmolBinary(this);this.clear()},"JV.Viewer");c(c$,"clear",function(){this.setFileInfo([this.vwr.getZapName()]);this.jmb.spardirCache=null});
c(c$,"clearPngjCache",function(a){this.jmb.clearPngjCache(null==a?null:this.getCanonicalName(JU.Rdr.getZipRoot(a)))},"~S");c(c$,"setLoadState",function(a){this.vwr.getPreserveState()&&a.put("loadState",this.vwr.g.getLoadState(a))},"java.util.Map");c(c$,"getPathForAllFiles",function(){return this.pathForAllFiles});c(c$,"setPathForAllFiles",function(a){0<a.length&&(!a.endsWith("/")&&!a.endsWith("|"))&&(a+="/");return this.pathForAllFiles=a},"~S");c(c$,"setFileInfo",function(a){this.fullPathName=a[0];
this.fileName=a[Math.min(1,a.length-1)];this.nameAsGiven=a[Math.min(2,a.length-1)];this.nameAsGiven.equals("zapped")||(this.lastNameAsGiven=this.nameAsGiven,this.lastFullPathName=this.fullPathName)},"~A");c(c$,"getFileInfo",function(){return[this.fullPathName,this.fileName,this.nameAsGiven]});c(c$,"getFullPathName",function(a){var b=null!=this.fullPathName?this.fullPathName:this.nameAsGiven;return!a||!b.equals("zapped")?b:null!=this.lastFullPathName?this.lastFullPathName:this.lastNameAsGiven},"~B");
c(c$,"getFileName",function(){return null!=this.fileName?this.fileName:this.nameAsGiven});c(c$,"getAppletDocumentBase",function(){return null==this.appletDocumentBaseURL?"":this.appletDocumentBaseURL.toString()});c(c$,"setAppletContext",function(a){try{System.out.println('setting document base to "'+a+'"'),this.appletDocumentBaseURL=0==a.length?null:new java.net.URL(Z("java.net.URL"),a,null)}catch(b){if(B(b,java.net.MalformedURLException))System.out.println("error setting document base to "+a);else throw b;
}},"~S");c(c$,"setAppletProxy",function(a){this.appletProxy=null==a||0==a.length?null:a},"~S");c(c$,"createAtomSetCollectionFromFile",function(a,b,c){null==b.get("atomDataOnly")&&this.setLoadState(b);a=this.vwr.resolveDatabaseFormat(a);var f=a.indexOf("::"),g=0<=f?a.substring(f+2):a,f=0<=f?a.substring(0,f):null;JU.Logger.info("\nFileManager.getAtomSetCollectionFromFile("+g+")"+(a.equals(g)?"":" //"+a));var e=this.getClassifiedName(g,!0);if(1==e.length)return e[0];a=e[0];e=e[1];b.put("fullPathName",
(null==f?"":f+"::")+a.$replace("\\","/"));this.vwr.getBoolean(603979880)&&this.vwr.getBoolean(603979825)&&this.vwr.scriptStatus("Requesting "+a);b=new J.io.FileReader(this,this.vwr,e,a,g,f,null,b,c);b.run();return b.getAtomSetCollection()},"~S,java.util.Map,~B");c(c$,"createAtomSetCollectionFromFiles",function(a,b,c){this.setLoadState(b);for(var f=Array(a.length),g=Array(a.length),e=Array(a.length),h=0;h<a.length;h++){var j=a[h].indexOf("::"),k=0<=j?a[h].substring(j+2):a[h],j=0<=j?a[h].substring(0,
j):null,n=this.getClassifiedName(k,!0);if(1==n.length)return n[0];f[h]=n[0];a[h]=n[0].$replace("\\","/");e[h]=j;g[h]=k}b.put("fullPathNames",f);b.put("fileTypes",e);a=this.newFilesReader(f,g,e,null,b,c);a.run();return a.getAtomSetCollection()},"~A,java.util.Map,~B");c(c$,"createAtomSetCollectionFromString",function(a,b,c){this.setLoadState(b);var f=0<=a.indexOf("Viewer.AddHydrogens")?this.getFileInfo():null;b=new J.io.FileReader(this,this.vwr,"string","string","string",null,JU.Rdr.getBR(a),b,c);b.run();
null!=f&&this.setFileInfo(f);!c&&!q(b.getAtomSetCollection(),String)&&(this.vwr.zap(!1,!0,!1),this.setFileInfo(["5\n\nC 0 0 0\nH .63 .63 .63\nH -.63 -.63 .63\nH -.63 .63 -.63\nH .63 -.63 -.63"===a?"Jmol Model Kit":"string"]));return b.getAtomSetCollection()},"~S,java.util.Map,~B");c(c$,"createAtomSeCollectionFromStrings",function(a,b,c,f){if(!c.containsKey("isData")){var g='"'+this.vwr.getDataSeparator()+'"',e='"'+(f?"append":"model")+' inline"',h=new JU.SB;h.append('set dataSeparator "~~~next file~~~";\ndata ').append(e);
for(var j=0;j<a.length;j++)0<j&&h.append("~~~next file~~~"),h.append(a[j]);h.append("end ").append(e).append(";set dataSeparator ").append(g);b.appendSB(h)}this.setLoadState(c);JU.Logger.info("FileManager.getAtomSetCollectionFromStrings(string[])");b=Array(a.length);g=Array(a.length);for(j=0;j<a.length;j++)b[j]="string["+j+"]",g[j]=JV.FileManager.newDataReader(this.vwr,a[j]);a=this.newFilesReader(b,b,null,g,c,f);a.run();return a.getAtomSetCollection()},"~A,JU.SB,java.util.Map,~B");c(c$,"createAtomSeCollectionFromArrayData",
function(a,b,c){JU.Logger.info("FileManager.getAtomSetCollectionFromArrayData(Vector)");for(var f=a.size(),g=Array(f),e=Array(f),h=0;h<f;h++)g[h]="String["+h+"]",e[h]=JV.FileManager.newDataReader(this.vwr,a.get(h));a=this.newFilesReader(g,g,null,e,b,c);a.run();return a.getAtomSetCollection()},"JU.Lst,java.util.Map,~B");c$.newDataReader=c(c$,"newDataReader",function(a,b){var c=q(b,String)?"String":JU.PT.isAS(b)?"Array":q(b,JU.Lst)?"List":null;return null==c?null:J.api.Interface.getInterface("JU."+
c+"DataReader",a,"file").setData(b)},"JV.Viewer,~O");c(c$,"newFilesReader",function(a,b,c,f,g,e){var h=J.api.Interface.getOption("io.FilesReader",this.vwr,"file");h.set(this,this.vwr,a,b,c,f,g,e);return h},"~A,~A,~A,~A,java.util.Map,~B");c(c$,"createAtomSetCollectionFromDOM",function(a,b){var c=J.api.Interface.getOption("io.DOMReadaer",this.vwr,"file");c.set(this,this.vwr,a,b);c.run();return c.getAtomSetCollection()},"~O,java.util.Map");c(c$,"createAtomSetCollectionFromReader",function(a,b,c,f){a=
new J.io.FileReader(this,this.vwr,b,a,b,null,c,f,!1);a.run();return a.getAtomSetCollection()},"~S,~S,~O,java.util.Map");c(c$,"getBufferedInputStream",function(a){a=this.getBufferedReaderOrErrorMessageFromName(a,Array(2),!0,!0);return q(a,java.io.BufferedInputStream)?a:null},"~S");c(c$,"getBufferedInputStreamOrErrorMessageFromName",function(a,b,c,f,g,e,h){var j=null;h&&null==g&&(j=null==b||null==this.jmb.pngjCache?null:this.jmb.getCachedPngjBytes(b),null==j&&(j=this.cacheGet(a,!0)));var k=b=null;try{if(null==
j){var n=0<=a.indexOf("?POST?_PNGJBIN_"),m=n||0<=a.indexOf("?POST?_PNGJ_");if(0<a.indexOf("?POST?_PNG_")||m){var r=Array(1),p=this.vwr.getImageAsBytes(m?"PNGJ":"PNG",0,0,-1,r);if(null!=r[0])return r[0];n?(g=p,a=JU.PT.rep(a,"?_","=_")):a=(new JU.SB).append(a).append("=").appendSB(JU.Base64.getBase64(p)).toString()}var s=JU.OC.urlTypeIndex(a),n=0<=s,m=null;if(n&&0<=(s=a.indexOf("?POST?")))m=a.substring(s+6),a=a.substring(0,s);var t=null!=this.appletDocumentBaseURL;h&&(0<=a.indexOf(".png")&&null==this.jmb.pngjCache&&
this.vwr.cachePngFiles())&&this.jmb.clearAndCachePngjFile(null);if(t||n){t&&(n&&null!=this.appletProxy)&&(a=this.appletProxy+"?url="+this.urlEncode(a));var u=t?new java.net.URL(this.appletDocumentBaseURL,a,null):new java.net.URL(Z("java.net.URL"),a,null);if(f)return null;a=u.toString();c&&0>a.toLowerCase().indexOf("password")&&JU.Logger.info("FileManager opening 1 "+a);k=this.vwr.apiPlatform.getURLContents(u,g,m,!1);p=null;if(q(k,JU.SB)){a=k;if(e&&!JU.Rdr.isBase64(a))return JU.Rdr.getBR(a.toString());
p=JU.Rdr.getBytesFromSB(a)}else JU.PT.isAB(k)&&(p=k);null!=p&&(k=JU.Rdr.getBIS(p))}else if(!h||null==(j=this.cacheGet(a,!0)))c&&JU.Logger.info("FileManager opening 2 "+a),k=this.vwr.apiPlatform.getBufferedFileInputStream(a);if(q(k,String))return k}b=null==j?k:JU.Rdr.getBIS(j);f&&(b.close(),b=null);return b}catch(v){if(B(v,Exception))try{null!=b&&b.close()}catch(x){if(!B(x,java.io.IOException))throw x;}else throw v;}return""+v},"~S,~S,~B,~B,~A,~B,~B");c(c$,"urlEncode",function(a){try{return java.net.URLEncoder.encode(a,
"utf-8")}catch(b){if(B(b,java.io.UnsupportedEncodingException))return a;throw b;}},"~S");c(c$,"getEmbeddedFileState",function(a,b){var c=null,c=this.getZipDirectory(a,!1,b);if(0==c.length)return c=this.vwr.getFileAsString4(a,-1,!1,!0,!1,"file"),0>c.indexOf("**** Jmol Embedded Script ****")?"":J.io.JmolBinary.getEmbeddedScript(c);for(var f=0;f<c.length;f++)if(0<=c[f].indexOf(".spt"))return c=[a+"|"+c[f],null],this.getFileDataAsString(c,-1,!1,!1,!1),c[1];return""},"~S,~B");c(c$,"getFullPathNameOrError",
function(a,b,c){var f=this.getClassifiedName(a,!0);if(null==f||null==f[0]||2>f.length)return[null,"cannot read file name: "+a];a=f[0];f=f[0].$replace("\\","/");a=JU.Rdr.getZipRoot(a);b=this.getBufferedInputStreamOrErrorMessageFromName(a,f,!1,!b,null,!1,!b);c[0]=f;q(b,String)&&(c[1]=b);return b},"~S,~B,~A");c(c$,"getBufferedReaderOrErrorMessageFromName",function(a,b,c,f){var g=this.cacheGet(a,!1),e=JU.PT.isAB(g),h=e?g:null;if(a.startsWith("cache://")){if(null==g)return"cannot read "+a;if(e)h=g;else return JU.Rdr.getBR(g)}g=
this.getClassifiedName(a,!0);if(null==g)return"cannot read file name: "+a;null!=b&&(b[0]=g[0].$replace("\\","/"));return this.getUnzippedReaderOrStreamFromName(g[0],h,!1,c,!1,f,null)},"~S,~A,~B,~B");c(c$,"getUnzippedReaderOrStreamFromName",function(a,b,c,f,g,e,h){var j=null;e=null==b&&e?this.getSpartanFileList(a):null;var k=a;if(null!=e){if(g)return e;if(null!=e[2]){c=e[1];f=new java.util.Hashtable;3==e.length&&(j=this.getObjectAsSections(e[2],c,f),f.put("OUTPUT",j),e=this.jmb.spartanFileList(a,f.get(j)),
3==e.length&&(j=this.getObjectAsSections(e[2],c,f),f.put("OUTPUT",j),e=this.jmb.spartanFileList(e[1],f.get(j))));j=new JU.SB;null!=f.get("OUTPUT")&&j.append(f.get(f.get("OUTPUT")));for(var n=2;n<e.length;n++)a=e[n],a=this.getObjectAsSections(a,c,f),JU.Logger.info("reading "+a),a=f.get(a),j.append(a);a=j.toString();this.jmb.spardirPut(k.$replace("\\","/"),a.getBytes());return JU.Rdr.getBR(a)}}null==b&&null!=this.jmb.pngjCache&&(b=this.jmb.getCachedPngjBytes(a),null!=b&&null!=h&&h.put("sourcePNGJ",
Boolean.TRUE));e=a;0<=a.indexOf("|")&&(j=JU.PT.split(a.$replace("\\","/"),"|"),null==b&&JU.Logger.info("FileManager opening 3 "+a),a=j[0]);a=null==b?this.getBufferedInputStreamOrErrorMessageFromName(a,e,!0,!1,null,!f,!0):JU.Rdr.getBIS(b);try{if(q(a,String)||q(a,java.io.BufferedReader))return a;JU.Rdr.isGzipS(a)&&(a=JU.Rdr.getUnzippedInputStream(this.vwr.getJzt(),a));if(JU.Rdr.isCompoundDocumentS(a))return n=J.api.Interface.getInterface("JU.CompoundDocument",this.vwr,"file"),n.setStream(this.vwr.getJzt(),
a,!0),JU.Rdr.getBR(n.getAllDataFiles("Molecule","Input").toString());if(JU.Rdr.isPickleS(a))return a;a=JU.Rdr.getPngZipStream(a,!0);if(JU.Rdr.isZipS(a)){if(c)return JU.Rdr.newZipInputStream(this.vwr.getJzt(),a);var m=JU.Rdr.getZipFileDirectory(this.vwr.getJzt(),a,j,1,f);return q(m,String)?JU.Rdr.getBR(m):m}return f?a:JU.Rdr.getBufferedReader(a,null)}catch(r){if(B(r,Exception))return r.toString();throw r;}},"~S,~A,~B,~B,~B,~B,java.util.Map");c(c$,"getSpartanFileList",function(a){if(a.endsWith(".spt"))return[null,
null,null];if(a.endsWith(".spardir.zip"))return["SpartanSmol","Directory Entry ",a+"|output"];a=a.$replace("\\","/");if(!a.endsWith(".spardir")&&0>a.indexOf(".spardir/"))return null;var b=a.lastIndexOf(".spardir");return 0>b?null:a.lastIndexOf("/")>b?["SpartanSmol","Directory Entry ",a+"/input",a+"/archive",a+"/Molecule:asBinaryString",a+"/proparc"]:["SpartanSmol","Directory Entry ",a+"/output"]},"~S");c(c$,"getObjectAsSections",function(a,b,c){if(null==a)return null;var f=null,g=!1,e=a.$replace("\\",
"/");0<=a.indexOf(":asBinaryString")&&(g=!0,a=a.substring(0,a.indexOf(":asBinaryString")));var h=null;if(c.containsKey(e))return e;if(0<=a.indexOf("#JMOL_MODEL "))return c.put(e,e+"\n"),e;var j=a;0<=a.indexOf("|")&&(f=JU.PT.split(a,"|"),a=f[0]);var k=null;try{var n=this.getBufferedInputStreamOrErrorMessageFromName(a,j,!1,!1,null,!1,!0);if(q(n,String))return c.put(e,n+"\n"),e;k=n;if(JU.Rdr.isCompoundDocumentS(k)){var m=J.api.Interface.getInterface("JU.CompoundDocument",this.vwr,"file");m.setStream(this.vwr.getJzt(),
k,!0);m.getAllDataMapped(a.$replace("\\","/"),"Molecule",c)}else if(JU.Rdr.isZipS(k))JU.Rdr.getAllZipData(this.vwr.getJzt(),k,f,a.$replace("\\","/"),"Molecule",c);else{if(g){var r=J.api.Interface.getInterface("JU.BinaryDocument",this.vwr,"file");r.setStream(this.vwr.getJzt(),k,!1);h=new JU.SB;null!=b&&h.append("BEGIN Directory Entry "+e+"\n");try{for(;;)h.append(Integer.toHexString(r.readByte()&255)).appendC(" ")}catch(p){if(B(p,Exception))h.appendC("\n");else throw p;}}else{var s=JU.Rdr.getBufferedReader(JU.Rdr.isGzipS(k)?
new java.io.BufferedInputStream(JU.Rdr.newGZIPInputStream(this.vwr.getJzt(),k)):k,null),t,h=new JU.SB;for(null!=b&&h.append("BEGIN Directory Entry "+e+"\n");null!=(t=s.readLine());)h.append(t),h.appendC("\n");s.close()}null!=b&&h.append("\nEND Directory Entry "+e+"\n");c.put(e,h.toString())}}catch(u){if(B(u,Exception))c.put(e,u.toString());else throw u;}if(null!=k)try{k.close()}catch(v){if(!B(v,Exception))throw v;}c.containsKey(e)||c.put(e,"FILE NOT FOUND: "+e+"\n");return e},"~S,~S,java.util.Map");
c(c$,"getZipDirectory",function(a,b,c){a=this.getBufferedInputStreamOrErrorMessageFromName(a,a,!1,!1,null,!1,c);return JU.Rdr.getZipDirectoryAndClose(this.vwr.getJzt(),a,b?"JmolManifest":null)},"~S,~B,~B");c(c$,"getFileAsBytes",function(a,b){if(null==a)return null;var c=a,f=null;0<=a.indexOf("|")&&(f=JU.PT.split(a,"|"),a=f[0]);c=this.getBufferedInputStreamOrErrorMessageFromName(a,c,!1,!1,null,!1,!0);if(q(c,String))return"Error:"+c;try{var g=null!=b||null==f||1>=f.length||!JU.Rdr.isZipS(c)&&!JU.Rdr.isPngZipStream(c)?
JU.Rdr.getStreamAsBytes(c,b):JU.Rdr.getZipFileContentsAsBytes(this.vwr.getJzt(),c,f,1);c.close();return g}catch(e){if(B(e,Exception))return e.toString();throw e;}},"~S,JU.OC");c(c$,"getFileAsMap",function(a){var b=new java.util.Hashtable,c;if(null==a){c=Array(1);var f=this.vwr.getImageAsBytes("PNGJ",-1,-1,-1,c);if(null!=c[0])return b.put("_ERROR_",c[0]),b;c=JU.Rdr.getBIS(f)}else{f=Array(2);c=this.getFullPathNameOrError(a,!0,f);if(q(c,String))return b.put("_ERROR_",c),b;if(!this.checkSecurity(f[0]))return b.put("_ERROR_",
"java.io. Security exception: cannot read file "+f[0]),b}try{JU.Rdr.readFileAsMap(this.vwr.getJzt(),c,b,a)}catch(g){if(B(g,Exception))b.clear(),b.put("_ERROR_",""+g);else throw g;}return b},"~S");c(c$,"getFileDataAsString",function(a,b,c,f,g){a[1]="";var e=a[0];if(null==e)return!1;c=this.getBufferedReaderOrErrorMessageFromName(e,a,!1,c);if(q(c,String))return a[1]=c,!1;if(g&&!this.checkSecurity(a[0]))return a[1]="java.io. Security exception: cannot read file "+a[0],!1;try{return JU.Rdr.readAllAsString(c,
b,f,a,1)}catch(h){if(B(h,Exception))return!1;throw h;}},"~A,~N,~B,~B,~B");c(c$,"checkSecurity",function(a){if(!a.startsWith("file:"))return!0;var b=a.lastIndexOf("/");return a.lastIndexOf(":/")==b-1||0<=a.indexOf("/.")||a.lastIndexOf(".")<a.lastIndexOf("/")?!1:!0},"~S");c(c$,"loadImage",function(a,b){var c=null,f=null,g=null;q(a,java.util.Map)&&(a=a.containsKey("_DATA_")?a.get("_DATA_"):a.get("_IMAGE_"));q(a,JS.SV)&&(a=a.value);var e=q(a,String)?a:null;null!=e&&e.startsWith(";base64,")?g=JU.Base64.decodeBase64(e):
q(a,JU.BArray)?g=a.data:(e=this.getClassifiedName(a,!0),f=null==e?"cannot read file name: "+a:e[0].$replace("\\","/"),null!=e&&(c=this.jmb.getImage(this.vwr,f,b)));null!=g&&(c=this.jmb.getImage(this.vwr,g,b));q(c,String)&&(f=c,c=null);this.vwr.isJS||(null!=c&&null!=g&&(f=";base64,"+JU.Base64.getBase64(g).toString()),this.vwr.loadImageData(c,f,b,null))},"~O,~S");c(c$,"getClassifiedName",function(a,b){if(null==a)return[null];var c=0<this.pathForAllFiles.length;if(a.startsWith("?")||a.startsWith("http://?")){if(null==
(a=this.vwr.dialogAsk("Load",a)))return[b?"#CANCELED#":null];c=!1}var f=null,g=null,e=null;if(a.startsWith("cache://"))return e=Array(3),e[0]=e[2]=a,e[1]=JV.FileManager.stripPath(e[0]),e;a=this.vwr.resolveDatabaseFormat(a);0>a.indexOf(":")&&0!=a.indexOf("/")&&(a=JV.FileManager.addDirectory(this.vwr.getDefaultDirectory(),a));if(null==this.appletDocumentBaseURL)if(0<=JU.OC.urlTypeIndex(a)||this.vwr.haveAccess(JV.Viewer.ACCESS.NONE)||this.vwr.haveAccess(JV.Viewer.ACCESS.READSPT)&&!a.endsWith(".spt")&&
!a.endsWith("/"))try{g=new java.net.URL(Z("java.net.URL"),a,null)}catch(h){if(B(h,java.net.MalformedURLException))return[b?h.toString():null];throw h;}else var f=this.vwr.apiPlatform.newFile(a),e=f.getFullPath(),j=f.getName(),e=[null==e?j:e,j,null==e?j:"file:/"+e.$replace("\\","/")];else try{if(1==a.indexOf(":\\")||1==a.indexOf(":/"))a="file:/"+a;g=new java.net.URL(this.appletDocumentBaseURL,a,null)}catch(k){if(B(k,java.net.MalformedURLException))return[b?k.toString():null];throw k;}null!=g&&(e=Array(3),
e[0]=e[2]=g.toString(),e[1]=JV.FileManager.stripPath(e[0]));c&&(c=e[0],e[0]=this.pathForAllFiles+e[1],JU.Logger.info("FileManager substituting "+c+" --\x3e "+e[0]));if(b&&(null!=f||4==JU.OC.urlTypeIndex(e[0])))f=null==f?JU.PT.trim(e[0].substring(5),"/"):e[0],c=f.length-e[1].length-1,0<c&&(f=f.substring(0,c),JV.FileManager.setLocalPath(this.vwr,f,!0));return e},"~S,~B");c$.addDirectory=c(c$,"addDirectory",function(a,b){if(0==a.length)return b;var c=0<b.length?b.charAt(0):" ",f=a.toLowerCase();if((f.endsWith(".zip")||
f.endsWith(".tar"))&&"|"!=c&&"/"!=c)a+="|";return a+("/"==c||"/"==c||"|"==(c=a.charAt(a.length-1))||"/"==c?"":"/")+b},"~S,~S");c(c$,"getDefaultDirectory",function(a){a=this.getClassifiedName(a,!0);if(null==a)return"";a=JV.FileManager.fixPath(a[0]);return null==a?"":a.substring(0,a.lastIndexOf("/"))},"~S");c$.fixPath=c(c$,"fixPath",function(a){a=a.$replace("\\","/");a=JU.PT.rep(a,"/./","/");var b=a.lastIndexOf("//")+1;1>b&&(b=a.indexOf(":/")+1);1>b&&(b=a.indexOf("/"));if(0>b)return null;var c=a.substring(0,
b);for(a=a.substring(b);0<=(b=a.lastIndexOf("/../"));){var f=a.substring(0,b).lastIndexOf("/");if(0>f)return JU.PT.rep(c+a,"/../","/");a=a.substring(0,f)+a.substring(b+3)}0==a.length&&(a="/");return c+a},"~S");c(c$,"getFilePath",function(a,b,c){a=this.getClassifiedName(a,!1);return null==a||1==a.length?"":c?a[1]:b?a[2]:null==a[0]?"":a[0].$replace("\\","/")},"~S,~B,~B");c$.getLocalDirectory=c(c$,"getLocalDirectory",function(a,b){var c=a.getP(b?"currentLocalPath":"defaultDirectoryLocal");b&&0==c.length&&
(c=a.getP("defaultDirectoryLocal"));if(0==c.length)return a.isApplet?null:a.apiPlatform.newFile(System.getProperty("user.dir","."));a.isApplet&&0==c.indexOf("file:/")&&(c=c.substring(6));c=a.apiPlatform.newFile(c);try{return c.isDirectory()?c:c.getParentAsFile()}catch(f){if(B(f,Exception))return null;throw f;}},"JV.Viewer,~B");c$.setLocalPath=c(c$,"setLocalPath",function(a,b,c){for(;b.endsWith("/")||b.endsWith("\\");)b=b.substring(0,b.length-1);a.setStringProperty("currentLocalPath",b);c||a.setStringProperty("defaultDirectoryLocal",
b)},"JV.Viewer,~S,~B");c$.getLocalPathForWritingFile=c(c$,"getLocalPathForWritingFile",function(a,b){if(b.startsWith("http://"))return b;b=JU.PT.rep(b,"?","");if(0==b.indexOf("file:/"))return b.substring(6);if(0==b.indexOf("/")||0<=b.indexOf(":"))return b;var c=null;try{c=JV.FileManager.getLocalDirectory(a,!1)}catch(f){if(!B(f,Exception))throw f;}return null==c?b:JV.FileManager.fixPath(c.toString()+"/"+b)},"JV.Viewer,~S");c$.setScriptFileReferences=c(c$,"setScriptFileReferences",function(a,b,c,f){null!=
b&&(a=JV.FileManager.setScriptFileRefs(a,b,!0));null!=c&&(a=JV.FileManager.setScriptFileRefs(a,c,!1));a=JU.PT.rep(a,'\u0001"','"');if(null!=f){for(;f.endsWith("/");)f=f.substring(0,f.length-1);for(b=0;b<JV.FileManager.scriptFilePrefixes.length;b++)c=JV.FileManager.scriptFilePrefixes[b],a=JU.PT.rep(a,c+".",c+f)}return a},"~S,~S,~S,~S");c$.setScriptFileRefs=c(c$,"setScriptFileRefs",function(a,b,c){if(null==b)return a;var f=0==b.length,g=new JU.Lst;J.io.JmolBinary.getFileReferences(a,g);for(var e=new JU.Lst,
h=new JU.Lst,j=g.size(),k=0;k<j;k++){var n=g.get(k),m=n;if(c==JU.OC.isLocal(m)){var p=f?-1:m.indexOf("/"+b+"/");0<=p?m=m.substring(p+1):(p=m.lastIndexOf("/"),0>p&&!f&&(m="/"+m),(0>p||f)&&p++,m=b+m.substring(p))}JU.Logger.info("FileManager substituting "+n+" --\x3e "+m);e.addLast('"'+n+'"');h.addLast('\u0001"'+m+'"')}return JU.PT.replaceStrings(a,e,h)},"~S,~S,~B");c$.stripPath=c(c$,"stripPath",function(a){var b=Math.max(a.lastIndexOf("|"),a.lastIndexOf("/"));return a.substring(b+1)},"~S");c$.fixFileNameVariables=
c(c$,"fixFileNameVariables",function(a,b){var c=JU.PT.rep(a,"%FILE",b);if(0>c.indexOf("%LC"))return c;b=b.toLowerCase();c=JU.PT.rep(c,"%LCFILE",b);4==b.length&&(c=JU.PT.rep(c,"%LC13",b.substring(1,3)));return c},"~S,~S");c(c$,"cachePut",function(a,b){a=a.$replace("\\","/");JU.Logger.debugging&&JU.Logger.debug("cachePut "+a);null==b||"".equals(b)?this.cache.remove(a):(this.cache.put(a,b),this.jmb.getCachedPngjBytes(a))},"~S,~O");c(c$,"cacheGet",function(a,b){a=a.$replace("\\","/");var c=a.indexOf("|");
0<=c&&(a=a.substring(0,c));a=this.getFilePath(a,!0,!1);c=null;(c=Jmol.Cache.get(a))||(c=this.cache.get(a));return b&&q(c,String)?null:c},"~S,~B");c(c$,"cacheClear",function(){JU.Logger.info("cache cleared");this.cache.clear();this.clearPngjCache(null)});c(c$,"cacheFileByNameAdd",function(a,b){if(null==a||!b&&a.equalsIgnoreCase(""))return this.cacheClear(),-1;var c;if(b){a=this.vwr.resolveDatabaseFormat(a);c=this.getFileAsBytes(a,null);if(q(c,String))return 0;this.cachePut(a,c)}else{if(a.endsWith("*"))return JU.AU.removeMapKeys(this.cache,
a.substring(0,a.length-1));c=this.cache.remove(a.$replace("\\","/"))}return null==c?0:(q(c,String),c.length)},"~S,~B");c(c$,"cacheList",function(){for(var a=new java.util.Hashtable,b,c=this.cache.entrySet().iterator();c.hasNext()&&((b=c.next())||1);)a.put(b.getKey(),Integer.$valueOf(JU.PT.isAB(b.getValue())?b.getValue().length:b.getValue().toString().length));return a});c(c$,"getCanonicalName",function(a){var b=this.getClassifiedName(a,!0);return null==b?a:b[2]},"~S");j(c$,"postByteArray",function(a,
b){var c=this.getBufferedInputStreamOrErrorMessageFromName(a,null,!1,!1,b,!1,!0);if(q(c,String))return c;try{c=JU.Rdr.getStreamAsBytes(c,null)}catch(f){if(B(f,java.io.IOException))try{c.close()}catch(g){if(!B(g,java.io.IOException))throw g;}else throw f;}return null==c?"":JU.Rdr.fixUTF(c)},"~S,~A");C(c$,"SIMULATION_PROTOCOL","http://SIMULATION/");c$.scriptFilePrefixes=c$.prototype.scriptFilePrefixes=['/*file*/"','FILE0="','FILE1="']}),u("JV"),v(["java.util.Hashtable","JU.P3","J.c.CBK"],"JV.GlobalSettings",
"java.lang.Boolean $.Float JU.DF $.PT $.SB J.c.STR JS.SV JU.Escape $.Logger JV.JC $.StateManager $.Viewer".split(" "),function(){c$=s(function(){this.databases=this.htUserVariables=this.htPropertyFlagsRemoved=this.htBooleanParameterFlags=this.htNonbooleanParameterValues=this.vwr=null;this.zDepth=0;this.zShadePower=3;this.zSlab=50;this.slabByAtom=this.slabByMolecule=!1;this.appendNew=this.allowEmbeddedScripts=!0;this.appletProxy="";this.applySymmetryToBonds=!1;this.atomTypes="";this.autoBond=!0;this.axesOrientationRasmol=
!1;this.bondRadiusMilliAngstroms=150;this.bondTolerance=0.45;this.defaultDirectory="";this.defaultStructureDSSP=!0;this.ptDefaultLattice=null;this.defaultLoadFilter=this.defaultLoadScript="";this.defaultDropScript="zap; load SYNC \"%FILE\";if (%ALLOWCARTOONS && _loadScript == '' && defaultLoadScript == '' && _filetype == 'Pdb') {if ({(protein or nucleic)&*/1.1} && {*/1.1}[1].groupindex != {*/1.1}[0].groupindex){select protein or nucleic;cartoons only;}if ({visible}){color structure}else{wireframe -0.1};if (!{visible}){spacefill 23%};select *}";
this.forceAutoBond=!1;this.fractionalRelative=!0;this.inlineNewlineChar="|";this.pubChemFormat=this.nihResolverFormat=this.smilesUrlFormat=this.nmrPredictFormat=this.nmrUrlFormat=this.loadLigandFormat=this.loadFormat=null;this.edsUrlFormat="http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.omap";this.edsUrlFormatDiff="http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE_diff.omap";this.edsUrlCutoff="http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.sfdat";this.minBondDistance=0.4;this.minPixelSelRadius=
6;this.pdbSequential=this.pdbGetHeader=this.pdbAddHydrogens=!1;this.percentVdwAtom=23;this.smallMoleculeMaxAtoms=4E4;this.smartAromatic=!0;this.solventOn=this.allowMoveAtoms=this.allowRotateSelected=this.legacyJavaFloat=this.legacyHAddition=this.legacyAutoBonding=this.zeroBasedXyzRasmol=!1;this.defaultTorsionLabel=this.defaultDistanceLabel=this.defaultAngleLabel="%VALUE %UNITS";this.measureAllModels=this.justifyMeasurements=!1;this.minimizationSteps=100;this.minimizationRefresh=!0;this.minimizationSilent=
!1;this.minimizationCriterion=0.001;this.antialiasDisplay=!1;this.displayCellParameters=this.antialiasTranslucent=this.imageState=this.antialiasImages=!0;this.dotsSelectedOnly=!1;this.dotSurface=!0;this.dotDensity=3;this.meshScale=this.dotScale=1;this.isosurfaceKey=this.greyscaleRendering=!1;this.isosurfacePropertySmoothing=!0;this.isosurfacePropertySmoothingPower=7;this.platformSpeed=10;this.repaintWaitMs=1E3;this.showHiddenSelectionHalos=!1;this.showMeasurements=this.showKeyStrokes=!0;this.showTiming=
!1;this.zoomLarge=!0;this.zoomHeight=!1;this.backgroundImageFileName=null;this.hbondsBackbone=this.bondModeOr=this.partialDots=!1;this.hbondsAngleMinimum=90;this.hbondsDistanceMaximum=3.25;this.hbondsRasmol=!0;this.hbondsSolid=!1;this.modeMultipleBond=2;this.showMultipleBonds=this.showHydrogens=!0;this.ssbondsBackbone=!1;this.multipleBondSpacing=-1;this.multipleBondRadiusFactor=0;this.chainCaseSensitive=this.cartoonRibose=this.cartoonLadders=this.cartoonFancy=this.backboneSteps=this.cartoonRockets=
this.cartoonBaseEdges=!1;this.hermiteLevel=0;this.rangeSelected=this.highResolutionFlag=!1;this.rasmolHeteroSetting=this.rasmolHydrogenSetting=!0;this.ribbonAspectRatio=16;this.rocketBarrels=this.ribbonBorder=!1;this.sheetSmoothing=1;this.translucent=this.traceAlpha=!0;this.allowGestures=this.twistedSheets=!1;this.allowMultiTouch=this.allowModelkit=!0;this.allowKeyStrokes=!1;this.animationFps=10;this.atomPicking=!0;this.autoFps=!1;this.axesMode=603979810;this.axesScale=2;this.starWidth=0.05;this.bondPicking=
!1;this.dataSeparator="~~~";this.debugScript=!1;this.defaultDrawArrowScale=0.5;this.defaultLabelXYZ="%a";this.defaultLabelPDB="%m%r";this.defaultTranslucent=0.5;this.delayMaximumMs=0;this.dipoleScale=1;this.drawFontSize=14;this.drawPicking=this.drawHover=this.dragSelected=this.disablePopupMenu=!1;this.dsspCalcHydrogen=!0;this.energyUnits="kJ";this.exportScale=1;this.helpPath="http://chemapps.stolaf.edu/jmol/docs/index.htm";this.fontScaling=!1;this.fontCaching=!0;this.forceField="MMFF";this.helixStep=
1;this.hideNameInPopup=!1;this.hoverDelayMs=500;this.loadAtomDataTolerance=0.01;this.logGestures=this.logCommands=!1;this.measureDistanceUnits="nanometers";this.measurementLabels=!0;this.monitorEnergy=this.messageStyleChime=!1;this.modulationScale=1;this.multiProcessor=!0;this.particleRadius=20;this.pickingSpinRate=10;this.pickLabel="";this.pointGroupDistanceTolerance=0.2;this.pointGroupLinearTolerance=8;this.preserveState=!0;this.propertyColorScheme="roygb";this.quaternionFrame="p";this.saveProteinStructureState=
!0;this.showModVecs=!1;this.showUnitCellDetails=!0;this.solventProbeRadius=1.2;this.scriptDelay=0;this.statusReporting=this.selectAllModels=!0;this.strandCountForStrands=5;this.strandCountForMeshRibbon=7;this.strutSpacing=6;this.strutLengthMaximum=7;this.strutDefaultRadius=0.3;this.strutsMultiple=!1;this.waitForMoveTo=this.useScriptQueue=this.useNumberLocalization=this.useMinimizationThread=!0;this.vectorScale=1;this.vectorsCentered=this.vectorSymmetry=!1;this.vibrationScale=this.vibrationPeriod=
1;this.navigationPeriodic=this.navigationMode=this.hideNavigationPoint=this.wireframeRotation=!1;this.navigationSpeed=5;this.showNavigationPointAlways=!1;this.stereoState=null;this.modelKitMode=!1;this.objMad=this.objStateOn=this.objColors=null;this.ellipsoidFill=this.ellipsoidArrows=this.ellipsoidArcs=this.ellipsoidDots=this.ellipsoidAxes=!1;this.ellipsoidBall=!0;this.ellipsoidDotCount=200;this.ellipsoidAxisDiameter=0.02;this.testFlag4=this.testFlag3=this.testFlag2=this.testFlag1=!1;this.structureList=
null;this.haveSetStructureList=!1;this.userDatabases=null;this.bondingVersion=0;p(this,arguments)},JV,"GlobalSettings");N(c$,function(){this.htUserVariables=new java.util.Hashtable;this.ptDefaultLattice=new JU.P3;this.objColors=E(8,0);this.objStateOn=ea(8,!1);this.objMad=E(8,0);this.structureList=new java.util.Hashtable;this.structureList.put(J.c.STR.TURN,[30,90,-15,95]);this.structureList.put(J.c.STR.SHEET,[-180,-10,70,180,-180,-45,-180,-130,140,180,90,180]);this.structureList.put(J.c.STR.HELIX,
[-160,0,-100,45])});t(c$,function(a,b,c){this.vwr=a;this.htNonbooleanParameterValues=new java.util.Hashtable;this.htBooleanParameterFlags=new java.util.Hashtable;this.htPropertyFlagsRemoved=new java.util.Hashtable;null!=b&&(c||(this.htUserVariables=b.htUserVariables),this.debugScript=b.debugScript,this.disablePopupMenu=b.disablePopupMenu,this.messageStyleChime=b.messageStyleChime,this.defaultDirectory=b.defaultDirectory,this.allowGestures=b.allowGestures,this.allowModelkit=b.allowModelkit,this.allowMultiTouch=
b.allowMultiTouch,this.allowKeyStrokes=b.allowKeyStrokes,this.legacyAutoBonding=b.legacyAutoBonding,this.legacyHAddition=b.legacyHAddition,this.legacyJavaFloat=b.legacyJavaFloat,this.bondingVersion=b.bondingVersion,this.platformSpeed=b.platformSpeed,this.useScriptQueue=b.useScriptQueue,this.databases=b.databases,this.showTiming=b.showTiming,this.wireframeRotation=b.wireframeRotation,this.testFlag1=b.testFlag1,this.testFlag2=b.testFlag2,this.testFlag3=b.testFlag3,this.testFlag4=b.testFlag4);null==
this.databases&&(this.databases=new java.util.Hashtable,this.getDataBaseList(JV.JC.databases),this.getDataBaseList(this.userDatabases));this.loadFormat=this.databases.get("pdb");this.loadLigandFormat=this.databases.get("ligand");this.nmrUrlFormat=this.databases.get("nmr");this.nmrPredictFormat=this.databases.get("nmrdb");this.smilesUrlFormat=this.databases.get("nci")+"/file?format=sdf&get3d=True";this.nihResolverFormat=this.databases.get("nci");this.pubChemFormat=this.databases.get("pubchem");var f;
c=0;for(var g=J.c.CBK.values();c<g.length&&((f=g[c])||1);c++)this.resetValue(f.name()+"Callback",b);this.setI("historyLevel",0);this.setF("cameraDepth",3);this.setI("depth",0);this.setF("gestureSwipeFactor",1);this.setB("hideNotSelected",!1);this.setO("hoverLabel","");this.setB("isKiosk",a.isKiosk());this.setO("logFile",a.getLogFileName());this.setI("logLevel",JU.Logger.getLogLevel());this.setF("mouseWheelFactor",1.15);this.setF("mouseDragFactor",1);this.setI("navFps",10);this.setI("navigationDepth",
0);this.setI("navigationSlab",0);this.setI("navX",0);this.setI("navY",0);this.setI("navZ",0);this.setO("pathForAllFiles","");this.setB("perspectiveDepth",!0);this.setI("perspectiveModel",11);this.setO("picking","identify");this.setO("pickingStyle","toggle");this.setB("refreshing",!0);this.setI("rotationRadius",0);this.setI("scaleAngstromsPerInch",0);this.setI("scriptReportingLevel",0);this.setB("selectionHalos",!1);this.setB("showaxes",!1);this.setB("showboundbox",!1);this.setB("showfrank",!1);this.setB("showUnitcell",
!1);this.setI("slab",100);this.setB("slabEnabled",!1);this.setF("slabrange",0);this.setI("spinX",0);this.setI("spinY",30);this.setI("spinZ",0);this.setI("spinFps",30);this.setF("visualRange",5);this.setI("stereoDegrees",-5);this.setI("stateversion",0);this.setB("syncScript",a.sm.syncingScripts);this.setB("syncMouse",a.sm.syncingMouse);this.setB("syncStereo",a.sm.stereoSync);this.setB("windowCentered",!0);this.setB("zoomEnabled",!0);this.setI("_version",JV.JC.versionInt);this.setB("axesWindow",!0);
this.setB("axesMolecular",!1);this.setB("axesPosition",!1);this.setB("axesUnitcell",!1);this.setI("backgroundModel",0);this.setB("colorRasmol",!1);this.setO("currentLocalPath","");this.setO("defaultLattice","{0 0 0}");this.setO("defaultColorScheme","Jmol");this.setO("defaultDirectoryLocal","");this.setO("defaults","Jmol");this.setO("defaultVDW","Jmol");this.setO("exportDrivers","Idtf;Maya;Povray;Vrml;X3d;Tachyon;Obj");this.setI("propertyAtomNumberColumnCount",0);this.setI("propertyAtomNumberField",
0);this.setI("propertyDataColumnCount",0);this.setI("propertyDataField",0);this.setB("undo",!0);this.setB("allowEmbeddedScripts",this.allowEmbeddedScripts);this.setB("allowGestures",this.allowGestures);this.setB("allowKeyStrokes",this.allowKeyStrokes);this.setB("allowModelkit",this.allowModelkit);this.setB("allowMultiTouch",this.allowMultiTouch);this.setB("allowRotateSelected",this.allowRotateSelected);this.setB("allowMoveAtoms",this.allowMoveAtoms);this.setI("animationFps",this.animationFps);this.setB("antialiasImages",
this.antialiasImages);this.setB("antialiasDisplay",this.antialiasDisplay);this.setB("antialiasTranslucent",this.antialiasTranslucent);this.setB("appendNew",this.appendNew);this.setO("appletProxy",this.appletProxy);this.setB("applySymmetryToBonds",this.applySymmetryToBonds);this.setB("atomPicking",this.atomPicking);this.setO("atomTypes",this.atomTypes);this.setB("autoBond",this.autoBond);this.setB("autoFps",this.autoFps);this.setI("axesMode",603979808==this.axesMode?2:603979804==this.axesMode?1:0);
this.setF("axesScale",this.axesScale);this.setB("axesOrientationRasmol",this.axesOrientationRasmol);this.setB("backboneSteps",this.backboneSteps);this.setB("bondModeOr",this.bondModeOr);this.setB("bondPicking",this.bondPicking);this.setI("bondRadiusMilliAngstroms",this.bondRadiusMilliAngstroms);this.setF("bondTolerance",this.bondTolerance);this.setB("cartoonBaseEdges",this.cartoonBaseEdges);this.setB("cartoonFancy",this.cartoonFancy);this.setB("cartoonLadders",this.cartoonLadders);this.setB("cartoonLadders",
this.cartoonRibose);this.setB("cartoonRockets",this.cartoonRockets);this.setB("chainCaseSensitive",this.chainCaseSensitive);this.setI("bondingVersion",this.bondingVersion);this.setO("dataSeparator",this.dataSeparator);this.setB("debugScript",this.debugScript);this.setO("defaultAngleLabel",this.defaultAngleLabel);this.setF("defaultDrawArrowScale",this.defaultDrawArrowScale);this.setO("defaultDirectory",this.defaultDirectory);this.setO("defaultDistanceLabel",this.defaultDistanceLabel);this.setO("defaultDropScript",
this.defaultDropScript);this.setO("defaultLabelPDB",this.defaultLabelPDB);this.setO("defaultLabelXYZ",this.defaultLabelXYZ);this.setO("defaultLoadFilter",this.defaultLoadFilter);this.setO("defaultLoadScript",this.defaultLoadScript);this.setB("defaultStructureDSSP",this.defaultStructureDSSP);this.setO("defaultTorsionLabel",this.defaultTorsionLabel);this.setF("defaultTranslucent",this.defaultTranslucent);this.setI("delayMaximumMs",this.delayMaximumMs);this.setF("dipoleScale",this.dipoleScale);this.setB("disablePopupMenu",
this.disablePopupMenu);this.setB("displayCellParameters",this.displayCellParameters);this.setI("dotDensity",this.dotDensity);this.setI("dotScale",this.dotScale);this.setB("dotsSelectedOnly",this.dotsSelectedOnly);this.setB("dotSurface",this.dotSurface);this.setB("dragSelected",this.dragSelected);this.setB("drawHover",this.drawHover);this.setF("drawFontSize",this.drawFontSize);this.setB("drawPicking",this.drawPicking);this.setB("dsspCalculateHydrogenAlways",this.dsspCalcHydrogen);this.setO("edsUrlFormat",
this.edsUrlFormat);this.setO("edsUrlFormatDiff",this.edsUrlFormatDiff);this.setO("edsUrlCutoff",this.edsUrlCutoff);this.setB("ellipsoidArcs",this.ellipsoidArcs);this.setB("ellipsoidArrows",this.ellipsoidArrows);this.setB("ellipsoidAxes",this.ellipsoidAxes);this.setF("ellipsoidAxisDiameter",this.ellipsoidAxisDiameter);this.setB("ellipsoidBall",this.ellipsoidBall);this.setI("ellipsoidDotCount",this.ellipsoidDotCount);this.setB("ellipsoidDots",this.ellipsoidDots);this.setB("ellipsoidFill",this.ellipsoidFill);
this.setO("energyUnits",this.energyUnits);this.setF("exportScale",this.exportScale);this.setB("fontScaling",this.fontScaling);this.setB("fontCaching",this.fontCaching);this.setB("forceAutoBond",this.forceAutoBond);this.setO("forceField",this.forceField);this.setB("fractionalRelative",this.fractionalRelative);this.setF("particleRadius",this.particleRadius);this.setB("greyscaleRendering",this.greyscaleRendering);this.setF("hbondsAngleMinimum",this.hbondsAngleMinimum);this.setF("hbondsDistanceMaximum",
this.hbondsDistanceMaximum);this.setB("hbondsBackbone",this.hbondsBackbone);this.setB("hbondsRasmol",this.hbondsRasmol);this.setB("hbondsSolid",this.hbondsSolid);this.setI("helixStep",this.helixStep);this.setO("helpPath",this.helpPath);this.setI("hermiteLevel",this.hermiteLevel);this.setB("hideNameInPopup",this.hideNameInPopup);this.setB("hideNavigationPoint",this.hideNavigationPoint);this.setB("highResolution",this.highResolutionFlag);this.setF("hoverDelay",this.hoverDelayMs/1E3);this.setB("imageState",
this.imageState);this.setB("isosurfaceKey",this.isosurfaceKey);this.setB("isosurfacePropertySmoothing",this.isosurfacePropertySmoothing);this.setI("isosurfacePropertySmoothingPower",this.isosurfacePropertySmoothingPower);this.setB("justifyMeasurements",this.justifyMeasurements);this.setB("legacyAutoBonding",this.legacyAutoBonding);this.setB("legacyHAddition",this.legacyHAddition);this.setB("legacyJavaFloat",this.legacyJavaFloat);this.setF("loadAtomDataTolerance",this.loadAtomDataTolerance);this.setO("loadFormat",
this.loadFormat);this.setO("loadLigandFormat",this.loadLigandFormat);this.setB("logCommands",this.logCommands);this.setB("logGestures",this.logGestures);this.setB("measureAllModels",this.measureAllModels);this.setB("measurementLabels",this.measurementLabels);this.setO("measurementUnits",this.measureDistanceUnits);this.setI("meshScale",this.meshScale);this.setB("messageStyleChime",this.messageStyleChime);this.setF("minBondDistance",this.minBondDistance);this.setI("minPixelSelRadius",this.minPixelSelRadius);
this.setI("minimizationSteps",this.minimizationSteps);this.setB("minimizationRefresh",this.minimizationRefresh);this.setB("minimizationSilent",this.minimizationSilent);this.setF("minimizationCriterion",this.minimizationCriterion);this.setB("modelKitMode",this.modelKitMode);this.setF("modulationScale",this.modulationScale);this.setB("monitorEnergy",this.monitorEnergy);this.setF("multipleBondRadiusFactor",this.multipleBondRadiusFactor);this.setF("multipleBondSpacing",this.multipleBondSpacing);this.setB("multiProcessor",
this.multiProcessor&&1<JV.Viewer.nProcessors);this.setB("navigationMode",this.navigationMode);this.setB("navigationPeriodic",this.navigationPeriodic);this.setF("navigationSpeed",this.navigationSpeed);this.setO("nmrPredictFormat",this.nmrPredictFormat);this.setO("nmrUrlFormat",this.nmrUrlFormat);this.setB("partialDots",this.partialDots);this.setB("pdbAddHydrogens",this.pdbAddHydrogens);this.setB("pdbGetHeader",this.pdbGetHeader);this.setB("pdbSequential",this.pdbSequential);this.setI("percentVdwAtom",
this.percentVdwAtom);this.setI("pickingSpinRate",this.pickingSpinRate);this.setO("pickLabel",this.pickLabel);this.setI("platformSpeed",this.platformSpeed);this.setF("pointGroupLinearTolerance",this.pointGroupLinearTolerance);this.setF("pointGroupDistanceTolerance",this.pointGroupDistanceTolerance);this.setB("preserveState",this.preserveState);this.setO("propertyColorScheme",this.propertyColorScheme);this.setO("quaternionFrame",this.quaternionFrame);this.setB("rangeSelected",this.rangeSelected);this.setI("repaintWaitMs",
this.repaintWaitMs);this.setI("ribbonAspectRatio",this.ribbonAspectRatio);this.setB("ribbonBorder",this.ribbonBorder);this.setB("rocketBarrels",this.rocketBarrels);this.setB("saveProteinStructureState",this.saveProteinStructureState);this.setB("scriptqueue",this.useScriptQueue);this.setB("selectAllModels",this.selectAllModels);this.setB("selectHetero",this.rasmolHeteroSetting);this.setB("selectHydrogen",this.rasmolHydrogenSetting);this.setF("sheetSmoothing",this.sheetSmoothing);this.setB("showHiddenSelectionHalos",
this.showHiddenSelectionHalos);this.setB("showHydrogens",this.showHydrogens);this.setB("showKeyStrokes",this.showKeyStrokes);this.setB("showMeasurements",this.showMeasurements);this.setB("showModulationVectors",this.showModVecs);this.setB("showMultipleBonds",this.showMultipleBonds);this.setB("showNavigationPointAlways",this.showNavigationPointAlways);this.setI("showScript",this.scriptDelay);this.setB("showtiming",this.showTiming);this.setB("slabByMolecule",this.slabByMolecule);this.setB("slabByAtom",
this.slabByAtom);this.setB("smartAromatic",this.smartAromatic);this.setI("smallMoleculeMaxAtoms",this.smallMoleculeMaxAtoms);this.setO("smilesUrlFormat",this.smilesUrlFormat);this.setO("nihResolverFormat",this.nihResolverFormat);this.setO("pubChemFormat",this.pubChemFormat);this.setB("showUnitCellDetails",this.showUnitCellDetails);this.setB("solventProbe",this.solventOn);this.setF("solventProbeRadius",this.solventProbeRadius);this.setB("ssbondsBackbone",this.ssbondsBackbone);this.setF("starWidth",
this.starWidth);this.setB("statusReporting",this.statusReporting);this.setI("strandCount",this.strandCountForStrands);this.setI("strandCountForStrands",this.strandCountForStrands);this.setI("strandCountForMeshRibbon",this.strandCountForMeshRibbon);this.setF("strutDefaultRadius",this.strutDefaultRadius);this.setF("strutLengthMaximum",this.strutLengthMaximum);this.setI("strutSpacing",this.strutSpacing);this.setB("strutsMultiple",this.strutsMultiple);this.setB("testFlag1",this.testFlag1);this.setB("testFlag2",
this.testFlag2);this.setB("testFlag3",this.testFlag3);this.setB("testFlag4",this.testFlag4);this.setB("traceAlpha",this.traceAlpha);this.setB("translucent",this.translucent);this.setB("twistedSheets",this.twistedSheets);this.setB("useMinimizationThread",this.useMinimizationThread);this.setB("useNumberLocalization",this.useNumberLocalization);this.setB("vectorsCentered",this.vectorsCentered);this.setF("vectorScale",this.vectorScale);this.setB("vectorSymmetry",this.vectorSymmetry);this.setF("vibrationPeriod",
this.vibrationPeriod);this.setF("vibrationScale",this.vibrationScale);this.setB("waitForMoveTo",this.waitForMoveTo);this.setB("wireframeRotation",this.wireframeRotation);this.setI("zDepth",this.zDepth);this.setB("zeroBasedXyzRasmol",this.zeroBasedXyzRasmol);this.setB("zoomHeight",this.zoomHeight);this.setB("zoomLarge",this.zoomLarge);this.setI("zShadePower",this.zShadePower);this.setI("zSlab",this.zSlab)},"JV.Viewer,JV.GlobalSettings,~B");c(c$,"clear",function(){for(var a=this.htUserVariables.keySet().iterator();a.hasNext();){var b=
a.next();("@"==b.charAt(0)||b.startsWith("site_"))&&a.remove()}this.vwr.setPicked(-1);this.setI("_atomhovered",-1);this.setO("_pickinfo","");this.setB("selectionhalos",!1);this.setB("hidenotselected",!1);this.setB("measurementlabels",this.measurementLabels=!0);this.setB("drawHover",this.drawHover=!1);this.vwr.stm.saveScene("DELETE",null)});c(c$,"setUnits",function(a){var b=this.measureDistanceUnits,c=this.energyUnits;a.equalsIgnoreCase("angstroms")?this.measureDistanceUnits="angstroms":a.equalsIgnoreCase("nanometers")||
a.equalsIgnoreCase("nm")?this.measureDistanceUnits="nanometers":a.equalsIgnoreCase("picometers")||a.equalsIgnoreCase("pm")?this.measureDistanceUnits="picometers":a.equalsIgnoreCase("bohr")||a.equalsIgnoreCase("au")?this.measureDistanceUnits="au":a.equalsIgnoreCase("vanderwaals")||a.equalsIgnoreCase("vdw")?this.measureDistanceUnits="vdw":a.toLowerCase().endsWith("hz")||a.toLowerCase().endsWith("khz")?this.measureDistanceUnits=a.toLowerCase():a.equalsIgnoreCase("kj")?this.energyUnits="kJ":a.equalsIgnoreCase("kcal")&&
(this.energyUnits="kcal");b.equalsIgnoreCase(this.measureDistanceUnits)?c.equalsIgnoreCase(this.energyUnits)||this.setO("energyUnits",this.energyUnits):this.setO("measurementUnits",this.measureDistanceUnits)},"~S");c(c$,"isJmolVariable",function(a){return"_"==a.charAt(0)||this.htNonbooleanParameterValues.containsKey(a=a.toLowerCase())||this.htBooleanParameterFlags.containsKey(a)||0<=JV.GlobalSettings.unreportedProperties.indexOf(";"+a+";")},"~S");c(c$,"resetValue",function(a,b){this.setO(a,null==
b?"":b.getParameter(a,!0))},"~S,JV.GlobalSettings");c(c$,"setB",function(a,b){a=a.toLowerCase();this.htNonbooleanParameterValues.containsKey(a)||this.htBooleanParameterFlags.put(a,b?Boolean.TRUE:Boolean.FALSE)},"~S,~B");c(c$,"setI",function(a,b){2147483647!=b&&this.setO(a,Integer.$valueOf(b))},"~S,~N");c(c$,"setF",function(a,b){Float.isNaN(b)||this.setO(a,Float.$valueOf(b))},"~S,~N");c(c$,"setO",function(a,b){a=a.toLowerCase();null==b||this.htBooleanParameterFlags.containsKey(a)||this.htNonbooleanParameterValues.put(a,
b)},"~S,~O");c(c$,"removeParam",function(a){a=a.toLowerCase();this.htBooleanParameterFlags.containsKey(a)?(this.htBooleanParameterFlags.remove(a),this.htPropertyFlagsRemoved.containsKey(a)||this.htPropertyFlagsRemoved.put(a,Boolean.FALSE)):this.htNonbooleanParameterValues.containsKey(a)&&this.htNonbooleanParameterValues.remove(a)},"~S");c(c$,"setUserVariable",function(a,b){null!=b&&(a=a.toLowerCase(),this.htUserVariables.put(a,b.setName(a)));return b},"~S,JS.SV");c(c$,"unsetUserVariable",function(a){a.equals("all")||
a.equals("variables")?(this.htUserVariables.clear(),JU.Logger.info("all user-defined variables deleted")):this.htUserVariables.containsKey(a)&&(JU.Logger.info("variable "+a+" deleted"),this.htUserVariables.remove(a))},"~S");c(c$,"removeUserVariable",function(a){this.htUserVariables.remove(a)},"~S");c(c$,"getUserVariable",function(a){if(null==a)return null;a=a.toLowerCase();return this.htUserVariables.get(a)},"~S");c(c$,"getParameterEscaped",function(a,b){a=a.toLowerCase();if(this.htNonbooleanParameterValues.containsKey(a)){var c=
this.htNonbooleanParameterValues.get(a);return JV.StateManager.varClip(a,JU.Escape.e(c),b)}return this.htBooleanParameterFlags.containsKey(a)?this.htBooleanParameterFlags.get(a).toString():this.htUserVariables.containsKey(a)?this.htUserVariables.get(a).escape():this.htPropertyFlagsRemoved.containsKey(a)?"false":"<not defined>"},"~S,~N");c(c$,"getParameter",function(a,b){var c=this.getParam(a,!1);return null==c&&b?"":c},"~S,~B");c(c$,"getOrSetNewVariable",function(a,b){if(null==a||0==a.length)a="x";
var c=this.getParam(a,!0);return null==c&&b&&"_"!=a.charAt(0)?this.setUserVariable(a,JS.SV.newV(4,"")):JS.SV.getVariable(c)},"~S,~B");c(c$,"getParam",function(a,b){a=a.toLowerCase();if(a.equals("_memory")){var c=JU.DF.formatDecimal(0,1)+"/"+JU.DF.formatDecimal(0,1);this.htNonbooleanParameterValues.put("_memory",c)}return this.htNonbooleanParameterValues.containsKey(a)?this.htNonbooleanParameterValues.get(a):this.htBooleanParameterFlags.containsKey(a)?this.htBooleanParameterFlags.get(a):this.htPropertyFlagsRemoved.containsKey(a)?
Boolean.FALSE:this.htUserVariables.containsKey(a)?(c=this.htUserVariables.get(a),b?c:JS.SV.oValue(c)):null},"~S,~B");c(c$,"getVariableList",function(){return JV.StateManager.getVariableList(this.htUserVariables,0,!0,!1)});c(c$,"setStructureList",function(a,b){this.haveSetStructureList=!0;this.structureList.put(b,a)},"~A,J.c.STR");c(c$,"getStructureList",function(){return this.structureList});c(c$,"resolveDataBase",function(a,b){var c=this.databases.get(a.toLowerCase());if(null==c)return null;0>b.indexOf("/")&&
(a.equals("pubchem")?b="name/"+b:a.equals("nci")&&(b+="/file?format=sdf&get3d=True"));return 0>c.indexOf("%FILE")?c+b:JU.PT.formatStringS(c,"FILE",b)},"~S,~S");c$.doReportProperty=c(c$,"doReportProperty",function(a){return"_"!=a.charAt(0)&&0>JV.GlobalSettings.unreportedProperties.indexOf(";"+a+";")},"~S");c(c$,"getDataBaseList",function(a){if(null!=a)for(var b=0;b<a.length;b+=2)this.databases.put(a[b].toLowerCase(),a[b+1])},"~A");c(c$,"getAllVariables",function(){var a=new java.util.Hashtable;a.putAll(this.htBooleanParameterFlags);
a.putAll(this.htNonbooleanParameterValues);a.putAll(this.htUserVariables);return a});c(c$,"getLoadState",function(a){var b=new JU.SB;this.app(b,"set allowEmbeddedScripts false");this.allowEmbeddedScripts&&this.setB("allowEmbeddedScripts",!0);this.app(b,"set appendNew "+this.appendNew);this.app(b,"set appletProxy "+JU.PT.esc(this.appletProxy));this.app(b,"set applySymmetryToBonds "+this.applySymmetryToBonds);0<this.atomTypes.length&&this.app(b,"set atomTypes "+JU.PT.esc(this.atomTypes));this.app(b,
"set autoBond "+this.autoBond);this.axesOrientationRasmol&&this.app(b,"set axesOrientationRasmol true");this.app(b,"set bondRadiusMilliAngstroms "+this.bondRadiusMilliAngstroms);this.app(b,"set bondTolerance "+this.bondTolerance);this.app(b,"set defaultLattice "+JU.Escape.eP(this.ptDefaultLattice));this.app(b,"set defaultLoadFilter "+JU.PT.esc(this.defaultLoadFilter));this.app(b,'set defaultLoadScript ""');0<this.defaultLoadScript.length&&this.setO("defaultLoadScript",this.defaultLoadScript);this.app(b,
"set defaultStructureDssp "+this.defaultStructureDSSP);var c=this.vwr.getDefaultVdwNameOrData(-2147483648,null,null);this.app(b,"set defaultVDW "+c);c.equals("User")&&this.app(b,this.vwr.getDefaultVdwNameOrData(2147483647,null,null));this.app(b,"set forceAutoBond "+this.forceAutoBond);this.app(b,"#set defaultDirectory "+JU.PT.esc(this.defaultDirectory));this.app(b,"#set loadFormat "+JU.PT.esc(this.loadFormat));this.app(b,"#set loadLigandFormat "+JU.PT.esc(this.loadLigandFormat));this.app(b,"#set smilesUrlFormat "+
JU.PT.esc(this.smilesUrlFormat));this.app(b,"#set nihResolverFormat "+JU.PT.esc(this.nihResolverFormat));this.app(b,"#set pubChemFormat "+JU.PT.esc(this.pubChemFormat));this.app(b,"#set edsUrlFormat "+JU.PT.esc(this.edsUrlFormat));this.app(b,"#set edsUrlFormatDiff "+JU.PT.esc(this.edsUrlFormatDiff));this.app(b,"#set edsUrlCutoff "+JU.PT.esc(this.edsUrlCutoff));this.app(b,"set bondingVersion "+this.bondingVersion);this.app(b,"set legacyAutoBonding "+this.legacyAutoBonding);this.app(b,"set legacyHAddition "+
this.legacyHAddition);this.app(b,"set legacyJavaFloat "+this.legacyJavaFloat);this.app(b,"set minBondDistance "+this.minBondDistance);this.app(b,"set minimizationCriterion  "+this.minimizationCriterion);this.app(b,"set minimizationSteps  "+this.minimizationSteps);this.app(b,"set pdbAddHydrogens "+(null!=a&&a.get("pdbNoHydrogens")!==Boolean.TRUE?this.pdbAddHydrogens:!1));this.app(b,"set pdbGetHeader "+this.pdbGetHeader);this.app(b,"set pdbSequential "+this.pdbSequential);this.app(b,"set percentVdwAtom "+
this.percentVdwAtom);this.app(b,"set smallMoleculeMaxAtoms "+this.smallMoleculeMaxAtoms);this.app(b,"set smartAromatic "+this.smartAromatic);this.zeroBasedXyzRasmol&&this.app(b,"set zeroBasedXyzRasmol true");return b.toString()},"java.util.Map");c(c$,"app",function(a,b){0!=b.length&&a.append("  ").append(b).append(";\n")},"JU.SB,~S");c$.unreportedProperties=c$.prototype.unreportedProperties=(";ambientpercent;animationfps;antialiasdisplay;antialiasimages;antialiastranslucent;appendnew;axescolor;axesposition;axesmolecular;axesorientationrasmol;axesunitcell;axeswindow;axis1color;axis2color;axis3color;backgroundcolor;backgroundmodel;bondsymmetryatoms;boundboxcolor;cameradepth;bondingversion;debug;debugscript;defaultlatttice;defaults;defaultdropscript;diffusepercent;;exportdrivers;exportscale;_filecaching;_filecache;fontcaching;fontscaling;forcefield;language;legacyautobonding;legacyhaddition;legacyjavafloat;loglevel;logfile;loggestures;logcommands;measurestylechime;loadformat;loadligandformat;smilesurlformat;pubchemformat;nihresolverformat;edsurlformat;edsurlcutoff;multiprocessor;navigationmode;;pathforallfiles;perspectivedepth;phongexponent;perspectivemodel;platformspeed;preservestate;refreshing;repaintwaitms;rotationradius;showaxes;showaxis1;showaxis2;showaxis3;showboundbox;showfrank;showtiming;showunitcell;slabenabled;slab;slabrange;depth;zshade;zshadepower;specular;specularexponent;specularpercent;celshading;celshadingpower;specularpower;stateversion;statusreporting;stereo;stereostate;vibrationperiod;unitcellcolor;visualrange;windowcentered;zerobasedxyzrasmol;zoomenabled;mousedragfactor;mousewheelfactor;scriptqueue;scriptreportinglevel;syncscript;syncmouse;syncstereo;;defaultdirectory;currentlocalpath;defaultdirectorylocal;ambient;bonds;colorrasmol;diffuse;fractionalrelative;frank;hetero;hidenotselected;hoverlabel;hydrogen;languagetranslation;measurementunits;navigationdepth;navigationslab;picking;pickingstyle;propertycolorschemeoverload;radius;rgbblue;rgbgreen;rgbred;scaleangstromsperinch;selectionhalos;showscript;showselections;solvent;strandcount;spinx;spiny;spinz;spinfps;navx;navy;navz;navfps;"+
J.c.CBK.getNameList()+";undo;atompicking;drawpicking;bondpicking;pickspinrate;picklabel;modelkitmode;allowgestures;allowkeystrokes;allowmultitouch;allowmodelkit;dodrop;hovered;").toLowerCase()}),u("JV"),v(["JU.SB","$.V3","JU.Elements"],"JV.JC",["JU.PT"],function(){c$=A(JV,"JC");c$.embedScript=c(c$,"embedScript",function(a){return"\n/****** Jmol Embedded Script **** \n"+a+"\n**/"},"~S");c$.isShapeSecondary=c(c$,"isShapeSecondary",function(a){return 9<=a&&16>a},"~N");c$.getShapeVisibilityFlag=c(c$,
"getShapeVisibilityFlag",function(a){return 16<<Math.min(a,26)},"~N");c$.shapeTokenIndex=c(c$,"shapeTokenIndex",function(a){switch(a){case 1141899265:case 1073741860:return 0;case 1678770178:case 659488:return 1;case 1612189718:return 2;case 1611141176:return 3;case 1708058:return 4;case 1826248716:return 5;case 1746538509:case 537006096:return 6;case 1113200652:return 7;case 1113200646:return 8;case 1115297793:return 9;case 1113200654:return 10;case 1113200642:return 11;case 1650071565:return 12;
case 1113200647:return 13;case 1113200649:return 14;case 1113200650:return 15;case 1113198595:return 16;case 135175:return 17;case 135198:return 18;case 1113198597:return 19;case 1113198596:return 20;case 135192:return 21;case 135174:return 23;case 135176:return 22;case 135180:return 24;case 135402505:return 25;case 135182:return 26;case 1073877010:return 27;case 1073877011:return 28;case 135188:return 29;case 135190:return 30;case 537022465:return 31;case 1611272194:return 34;case 1679429641:return 32;
case 1614417948:return 33;case 544771:return 35;case 1611272202:return 36}return-1},"~N");c$.getShapeClassName=c(c$,"getShapeClassName",function(a,b){return 0>a?JV.JC.shapeClassBases[~a]:"J."+(b?"render":"shape")+(9<=a&&16>a?"bio.":16<=a&&23>a?"special.":24<=a&&30>a?"surface.":23==a?"cgo.":".")+JV.JC.shapeClassBases[a]},"~N,~B");c$.isScriptType=c(c$,"isScriptType",function(a){return JU.PT.isOneOf(a.substring(a.lastIndexOf(".")+1),";pse;spt;png;pngj;jmol;zip;")},"~S");c$.getOffset=c(c$,"getOffset",
function(a,b){a=Math.min(Math.max(a,-127),127);b=Math.min(Math.max(b,-127),127);return(a&255)<<8|b&255},"~N,~N");c$.getXOffset=c(c$,"getXOffset",function(a){switch(a){case 0:return 4;case 32767:return 0;default:return a<<48>>56}},"~N");c$.getYOffset=c(c$,"getYOffset",function(a){switch(a){case 0:return-4;case 32767:return 0;default:return-(a<<56>>56)}},"~N");c$.getAlignmentName=c(c$,"getAlignmentName",function(a){return JV.JC.hAlignNames[a&3]},"~N");c$.getPointer=c(c$,"getPointer",function(a){return 0==
(a&1)?"":0<(a&2)?"background":"on"},"~N");c$.getJSVSyncSignal=c(c$,"getJSVSyncSignal",function(a){return 7>a.length?-1:"JSPECVIPEAKS: SELECT:JSVSTR:H1SIMUL".indexOf(a.substring(0,7).toUpperCase())},"~S");C(c$,"databases","dssr;http://x3dna.bio.columbia.edu/dssr/report.php?id=%FILE&opts=--jmol%20--more;dssrModel;http://x3dna.bio.columbia.edu/dssr/report.php?POST?opts=--jmol --more&model=;ligand;http://www.rcsb.org/pdb/files/ligand/%FILE.cif;mp;http://www.materialsproject.org/materials/%FILE/cif;nci;http://cactus.nci.nih.gov/chemical/structure/%FILE;nmr;http://www.nmrdb.org/new_predictor?POST?molfile=;nmrdb;http://www.nmrdb.org/service/predictor?POST?molfile=;pdb;http://www.rcsb.org/pdb/files/%FILE.pdb.gz;pdbe;http://www.ebi.ac.uk/pdbe/entry-files/download/%FILE.cif;pubchem;http://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d;map;http://wwwdev.ebi.ac.uk/pdbe/api/%TYPE/%FILE?pretty=false&metadata=true;rna3d;http://rna.bgsu.edu/rna3dhub/%TYPE/download/%FILE".split(";"),
"copyright","(C) 2012 Jmol Development","version",null,"date",null,"versionInt",0);var a=null,b=null,a=Jmol.___JmolVersion,b=Jmol.___JmolDate;null!=b&&(b=b.substring(7,23));JV.JC.version=null!=a?a:"(Unknown version)";JV.JC.date=null!=b?b:"(Unknown date)";a=-1;try{var d=JV.JC.version,f=d.indexOf(".");0>f&&(a=1E5*Integer.parseInt(d),d=null);null!=d&&(a=1E5*Integer.parseInt(d.substring(0,f)),d=d.substring(f+1),f=d.indexOf("."),0>f&&(a+=1E3*Integer.parseInt(d),d=null),null!=d&&(a+=1E3*Integer.parseInt(d.substring(0,
f)),d=d.substring(f+1),f=d.indexOf("_"),0<=f&&(d=d.substring(0,f)),f=d.indexOf(" "),0<=f&&(d=d.substring(0,f)),a+=Integer.parseInt(d)))}catch(g){if(!B(g,NumberFormatException))throw g;}JV.JC.versionInt=a;C(c$,"officialRelease",!1,"DEFAULT_HELP_PATH","http://chemapps.stolaf.edu/jmol/docs/index.htm","STATE_VERSION_STAMP","# Jmol state version ","EMBEDDED_SCRIPT_TAG","**** Jmol Embedded Script ****","NOTE_SCRIPT_FILE","NOTE: file recognized as a script file: ","SCRIPT_EDITOR_IGNORE","\u0001## EDITOR_IGNORE ##",
"REPAINT_IGNORE","\u0001## REPAINT_IGNORE ##","LOAD_ATOM_DATA_TYPES",";xyz;vxyz;vibration;temperature;occupancy;partialcharge;","radiansPerDegree",0.017453292519943295,"allowedQuaternionFrames","RC;RP;a;b;c;n;p;q;x;","EXPORT_DRIVER_LIST","Idtf;Maya;Povray;Vrml;X3d;Tachyon;Obj");c$.center=c$.prototype.center=JU.V3.new3(0,0,0);c$.axisX=c$.prototype.axisX=JU.V3.new3(1,0,0);c$.axisY=c$.prototype.axisY=JU.V3.new3(0,1,0);c$.axisZ=c$.prototype.axisZ=JU.V3.new3(0,0,1);c$.axisNX=c$.prototype.axisNX=JU.V3.new3(-1,
0,0);c$.axisNY=c$.prototype.axisNY=JU.V3.new3(0,-1,0);c$.axisNZ=c$.prototype.axisNZ=JU.V3.new3(0,0,-1);c$.unitAxisVectors=c$.prototype.unitAxisVectors=[JV.JC.axisX,JV.JC.axisY,JV.JC.axisZ,JV.JC.axisNX,JV.JC.axisNY,JV.JC.axisNZ];C(c$,"XY_ZTOP",100,"DEFAULT_PERCENT_VDW_ATOM",23,"DEFAULT_BOND_RADIUS",0.15,"DEFAULT_BOND_MILLIANGSTROM_RADIUS",$(150),"DEFAULT_STRUT_RADIUS",0.3,"DEFAULT_BOND_TOLERANCE",0.45,"DEFAULT_MIN_BOND_DISTANCE",0.4,"DEFAULT_MAX_CONNECT_DISTANCE",1E8,"DEFAULT_MIN_CONNECT_DISTANCE",
0.1,"MINIMIZATION_ATOM_MAX",200,"MINIMIZE_FIXED_RANGE",5,"ENC_CALC_MAX_DIST",3,"ENV_CALC_MAX_LEVEL",3,"LABEL_FRONT_FLAG",32,"LABEL_GROUP_FLAG",16,"LABEL_POINTER_FLAGS",3,"LABEL_ALIGN_FLAGS",12,"LABEL_ZPOS_FLAGS",48,"LABEL_SCALE_FLAG",64,"LABEL_EXACT_OFFSET_FLAG",128,"LABEL_FLAGS",255,"LABEL_FLAG_OFFSET",8,"MOUSE_NONE",-1,"MULTIBOND_NEVER",0,"MULTIBOND_WIREFRAME",1,"MULTIBOND_NOTSMALL",2,"MULTIBOND_ALWAYS",3,"MAXIMUM_AUTO_BOND_COUNT",20,"madMultipleBondSmallMaximum",500,"ANGSTROMS_PER_BOHR",0.5291772,
"altArgbsCpk",[4294907027,4290750118,4294967088,4283897743,4294967232,4294967200,4292401368,4283453520,4282400832,4279259216],"argbsFormalCharge",[4294901760,4294918208,4294934656,4294951104,4294967295,4292401407,4290032895,4287664383,4285295871,4282927359,4280558847,4278190335],"argbsRwbScale",[4294901760,4294905872,4294909984,4294914096,4294918208,4294922320,4294926432,4294930544,4294934656,4294938768,4294942880,4294946992,4294951104,4294955216,4294959328,4294967295,4292927743,4291875071,4290822399,
4289769727,4288717055,4287664383,4286611711,4285559039,4284506367,4283453695,4282401023,4281348351,4280295679,4279243007,4278190335]);c$.FORMAL_CHARGE_COLIX_RED=c$.prototype.FORMAL_CHARGE_COLIX_RED=JU.Elements.elementSymbols.length+JV.JC.altArgbsCpk.length;c$.PARTIAL_CHARGE_COLIX_RED=c$.prototype.PARTIAL_CHARGE_COLIX_RED=JV.JC.FORMAL_CHARGE_COLIX_RED+JV.JC.argbsFormalCharge.length;c$.PARTIAL_CHARGE_RANGE_SIZE=c$.prototype.PARTIAL_CHARGE_RANGE_SIZE=JV.JC.argbsRwbScale.length;C(c$,"argbsRoygbScale",
[4294901760,4294909952,4294918144,4294926336,4294934528,4294942720,4294950912,4294959104,4294963200,4294967040,4293980160,4292935424,4290838272,4288741120,4286643968,4284546816,4282449664,4280352512,4278255360,4278255392,4278255424,4278255456,4278255488,4278255520,4278255552,4278255584,4278255615,4278247679,4278239487,4278231295,4278223103,4278214911,4278206719,4278198527,4278190335],"argbsIsosurfacePositive",4283441312,"argbsIsosurfaceNegative",4288684112,"ATOMID_AMINO_NITROGEN",1,"ATOMID_ALPHA_CARBON",
2,"ATOMID_CARBONYL_CARBON",3,"ATOMID_CARBONYL_OXYGEN",4,"ATOMID_O1",5,"ATOMID_ALPHA_ONLY_MASK",4,"ATOMID_PROTEIN_MASK",14,"ATOMID_O5_PRIME",6,"ATOMID_C5_PRIME",7,"ATOMID_C4_PRIME",8,"ATOMID_C3_PRIME",9,"ATOMID_O3_PRIME",10,"ATOMID_C2_PRIME",11,"ATOMID_C1_PRIME",12,"ATOMID_O4_PRIME",78,"ATOMID_NUCLEIC_MASK",8128,"ATOMID_NUCLEIC_PHOSPHORUS",13,"ATOMID_PHOSPHORUS_ONLY_MASK",8192,"ATOMID_DISTINGUISHING_ATOM_MAX",14,"ATOMID_CARBONYL_OD1",14,"ATOMID_CARBONYL_OD2",15,"ATOMID_CARBONYL_OE1",16,"ATOMID_CARBONYL_OE2",
17,"ATOMID_N1",32,"ATOMID_C2",33,"ATOMID_N3",34,"ATOMID_C4",35,"ATOMID_C5",36,"ATOMID_C6",37,"ATOMID_O2",38,"ATOMID_N7",39,"ATOMID_C8",40,"ATOMID_N9",41,"ATOMID_N4",42,"ATOMID_N2",43,"ATOMID_N6",44,"ATOMID_C5M",45,"ATOMID_O6",46,"ATOMID_O4",47,"ATOMID_S4",48,"ATOMID_C7",49,"ATOMID_TERMINATING_OXT",64,"ATOMID_H5T_TERMINUS",72,"ATOMID_O5T_TERMINUS",73,"ATOMID_O1P",74,"ATOMID_OP1",75,"ATOMID_O2P",76,"ATOMID_OP2",77,"ATOMID_O2_PRIME",79,"ATOMID_H3T_TERMINUS",88,"ATOMID_HO3_PRIME",89,"ATOMID_HO5_PRIME",
90,"GROUPID_ARGININE",2,"GROUPID_ASPARAGINE",3,"GROUPID_ASPARTATE",4,"GROUPID_CYSTEINE",5,"GROUPID_GLUTAMINE",6,"GROUPID_GLUTAMATE",7,"GROUPID_HISTIDINE",9,"GROUPID_LYSINE",12,"GROUPID_PROLINE",15,"GROUPID_TRYPTOPHAN",19,"GROUPID_AMINO_MAX",24,"GROUPID_NUCLEIC_MAX",42,"GROUPID_WATER",42,"GROUPID_SOLVENT_MIN",45,"GROUPID_ION_MIN",46,"GROUPID_ION_MAX",48,"predefinedVariable","@_1H _H & !(_2H,_3H);@_12C _C & !(_13C,_14C);@_14N _N & !(_15N);@solvent water, (_g>=45 & _g<48);@ligand _g=0|!(_g<46,protein,nucleic,water);@turn structure=1;@sheet structure=2;@helix structure=3;@helix310 substructure=7;@helixalpha substructure=8;@helixpi substructure=9;@bonded bondcount>0".split(";"),
"predefinedStatic","@amino _g>0 & _g<=23;@acidic asp,glu;@basic arg,his,lys;@charged acidic,basic;@negative acidic;@positive basic;@neutral amino&!(acidic,basic);@polar amino&!hydrophobic;@cyclic his,phe,pro,trp,tyr;@acyclic amino&!cyclic;@aliphatic ala,gly,ile,leu,val;@aromatic his,phe,trp,tyr;@cystine within(group, (cys.sg or cyx.sg) and connected(cys.sg or cyx.sg));@buried ala,cys,ile,leu,met,phe,trp,val;@surface amino&!buried;@hydrophobic ala,gly,ile,leu,met,phe,pro,trp,tyr,val;@mainchain backbone;@small ala,gly,ser;@medium asn,asp,cys,pro,thr,val;@large arg,glu,gln,his,ile,leu,lys,met,phe,trp,tyr;@c nucleic & ([C] or [DC] or within(group,_a=42));@g nucleic & ([G] or [DG] or within(group,_a=43));@cg c,g;@a nucleic & ([A] or [DA] or within(group,_a=44));@t nucleic & ([T] or [DT] or within(group,_a=45 | _a=49));@at a,t;@i nucleic & ([I] or [DI] or within(group,_a=46) & !g);@u nucleic & ([U] or [DU] or within(group,_a=47) & !t);@tu nucleic & within(group,_a=48);@ions _g>=46&_g<48;@alpha _a=2;@backbone protein&(_a>=1&_a<6|_a>=64&_a<72)|nucleic&(_a>=6&_a<14|_a>=72);@spine protein&_a>=1&_a<4|nucleic&_a>=6&_a<14&_a!=12;@sidechain (protein,nucleic) & !backbone;@base nucleic & !backbone;@dynamic_flatring search('[a]')".split(";"),
"MODELKIT_ZAP_STRING","5\n\nC 0 0 0\nH .63 .63 .63\nH -.63 -.63 .63\nH -.63 .63 -.63\nH .63 -.63 -.63","MODELKIT_ZAP_TITLE","Jmol Model Kit","ZAP_TITLE","zapped","ADD_HYDROGEN_TITLE","Viewer.AddHydrogens","DEFAULT_FONTFACE","SansSerif","DEFAULT_FONTSTYLE","Plain","LABEL_MINIMUM_FONTSIZE",6,"LABEL_MAXIMUM_FONTSIZE",63,"LABEL_DEFAULT_FONTSIZE",13,"LABEL_DEFAULT_X_OFFSET",4,"LABEL_DEFAULT_Y_OFFSET",4,"MEASURE_DEFAULT_FONTSIZE",15,"AXES_DEFAULT_FONTSIZE",14,"SHAPE_BALLS",0,"SHAPE_STICKS",1,"SHAPE_HSTICKS",
2,"SHAPE_SSSTICKS",3,"SHAPE_STRUTS",4,"SHAPE_LABELS",5,"SHAPE_MEASURES",6,"SHAPE_STARS",7,"SHAPE_MIN_HAS_SETVIS",8,"SHAPE_HALOS",8,"SHAPE_MIN_SECONDARY",9,"SHAPE_BACKBONE",9,"SHAPE_TRACE",10,"SHAPE_CARTOON",11,"SHAPE_STRANDS",12,"SHAPE_MESHRIBBON",13,"SHAPE_RIBBONS",14,"SHAPE_ROCKETS",15,"SHAPE_MAX_SECONDARY",16,"SHAPE_MIN_SPECIAL",16,"SHAPE_DOTS",16,"SHAPE_DIPOLES",17,"SHAPE_VECTORS",18,"SHAPE_GEOSURFACE",19,"SHAPE_ELLIPSOIDS",20,"SHAPE_MAX_SIZE_ZERO_ON_RESTRICT",21,"SHAPE_POLYHEDRA",21,"SHAPE_MIN_HAS_ID",
22,"SHAPE_MIN_MESH_COLLECTION",22,"SHAPE_DRAW",22,"SHAPE_MAX_SPECIAL",23,"SHAPE_CGO",23,"SHAPE_MIN_SURFACE",24,"SHAPE_ISOSURFACE",24,"SHAPE_CONTACT",25,"SHAPE_LCAOCARTOON",26,"SHAPE_LAST_ATOM_VIS_FLAG",26,"SHAPE_MO",27,"SHAPE_NBO",28,"SHAPE_PMESH",29,"SHAPE_PLOT3D",30,"SHAPE_MAX_SURFACE",30,"SHAPE_MAX_MESH_COLLECTION",30,"SHAPE_ECHO",31,"SHAPE_MAX_HAS_ID",32,"SHAPE_BBCAGE",32,"SHAPE_MAX_HAS_SETVIS",33,"SHAPE_UCCAGE",33,"SHAPE_AXES",34,"SHAPE_HOVER",35,"SHAPE_FRANK",36,"SHAPE_MAX",37,"ATOM_INFRAME",
1,"ATOM_VISSET",2,"ATOM_VISIBLE",4,"ATOM_NOTHIDDEN",8,"ATOM_NOFLAGS",-64,"ATOM_INFRAME_NOTHIDDEN",9,"ATOM_SHAPE_VIS_MASK",-10,"VIS_BOND_FLAG",32,"VIS_BALLS_FLAG",16,"VIS_LABEL_FLAG",512,"VIS_BACKBONE_FLAG",8192,"VIS_CARTOON_FLAG",32768,"ALPHA_CARBON_VISIBILITY_FLAG",1040384,"shapeClassBases","Balls Sticks Hsticks Sssticks Struts Labels Measures Stars Halos Backbone Trace Cartoon Strands MeshRibbon Ribbons Rockets Dots Dipoles Vectors GeoSurface Ellipsoids Polyhedra Draw CGO Isosurface Contact LcaoCartoon MolecularOrbital NBO Pmesh Plot3D Echo Bbcage Uccage Axes Hover Frank".split(" "),
"SCRIPT_COMPLETED","Script completed","JPEG_EXTENSIONS",";jpg;jpeg;jpg64;jpeg64;");c$.IMAGE_TYPES=c$.prototype.IMAGE_TYPES=";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;";c$.IMAGE_OR_SCENE=c$.prototype.IMAGE_OR_SCENE=";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;scene;";C(c$,"hAlignNames",["","left","center","right",""],"vAlignNames",["xy","top","bottom","middle"],"POINTER_NONE",0,"POINTER_ON",1,"POINTER_BACKGROUND",2,"VALIGN_XY",0,"VALIGN_TOP",1,"VALIGN_BOTTOM",2,"VALIGN_MIDDLE",
3,"VALIGN_XYZ",4,"ALIGN_NONE",0,"ALIGN_LEFT",1,"ALIGN_CENTER",2,"ALIGN_RIGHT",3,"JSV_NOT",-1,"JSV_SEND_JDXMOL",0,"JSV_SETPEAKS",7,"JSV_SELECT",14,"JSV_STRUCTURE",21,"JSV_SEND_H1SIMULATE",28,"READER_NOT_FOUND","File reader was not found:")}),u("JV"),v(["java.io.IOException"],"JV.JmolAsyncException",null,function(){c$=s(function(){this.fileName=null;p(this,arguments)},JV,"JmolAsyncException",java.io.IOException);t(c$,function(a){K(this,JV.JmolAsyncException,[]);this.fileName=a},"~S");c(c$,"getFileName",
function(){return this.fileName})}),u("JV"),v(null,"JV.ModelManager",["JM.ModelLoader"],function(){c$=s(function(){this.fileName=this.modelSetPathName=this.modelSet=this.vwr=null;p(this,arguments)},JV,"ModelManager");t(c$,function(a){this.vwr=a},"JV.Viewer");c(c$,"zap",function(){this.modelSetPathName=this.fileName=null;new JM.ModelLoader(this.vwr,this.vwr.getZapName(),null,null,null,null)});c(c$,"createModelSet",function(a,b,c,f,g,e){var h=null;e?(h=this.modelSet.modelSetName,h.equals("zapped")?
h=null:0>h.indexOf(" (modified)")&&(h+=" (modified)")):null==f?this.zap():(this.modelSetPathName=a,this.fileName=b);null!=f&&(null==h&&(h=this.vwr.getModelAdapter().getAtomSetCollectionName(f),null!=h&&(h=h.trim(),0==h.length&&(h=null)),null==h&&(h=JV.ModelManager.reduceFilename(b))),new JM.ModelLoader(this.vwr,h,c,f,e?this.modelSet:null,g));0==this.modelSet.ac&&!this.modelSet.getMSInfoB("isPyMOL")&&this.zap()},"~S,~S,JU.SB,~O,JU.BS,~B");c$.reduceFilename=c(c$,"reduceFilename",function(a){if(null==
a)return null;var b=a.indexOf(".");0<b&&(a=a.substring(0,b));24<a.length&&(a=a.substring(0,20)+" ...");return a},"~S");c(c$,"createAtomDataSet",function(a,b){return JM.ModelLoader.createAtomDataSet(this.vwr,this.modelSet,b,a,this.vwr.bsA())},"~O,~N")}),u("JV"),c$=s(function(){this.y=this.x=-1E3;this.modifiers=0;this.time=-1;this.name=null;p(this,arguments)},JV,"MouseState"),t(c$,function(a){this.name=a},"~S"),c(c$,"set",function(a,b,c,f){this.time=a;this.x=b;this.y=c;this.modifiers=f},"~N,~N,~N,~N"),
c(c$,"setCurrent",function(a,b){this.time=a.time;2>b&&(this.x=a.x,this.y=a.y);this.modifiers=a.modifiers},"JV.MouseState,~N"),c(c$,"inRange",function(a,b,c){return Math.abs(this.x-b)<=a&&Math.abs(this.y-c)<=a},"~N,~N,~N"),c(c$,"check",function(a,b,c,f,g,e){return this.modifiers==f&&(2147483647<=e?this.inRange(a,b,c):g-this.time<e&&20<g-this.time)},"~N,~N,~N,~N,~N,~N"),c(c$,"is",function(a){return a.x==this.x&&a.y==this.y&&a.time==this.time},"JV.MouseState"),C(c$,"MIN_DELAY_MS",20),u("JV"),v(["JU.BS"],
"JV.SelectionManager",["JU.AU","J.i18n.GT","JU.BSUtil"],function(){c$=s(function(){this.noneSelected=this.bsDeleted=this.bsSubset=this.bsFixed=this.bsSelection=this.bsHidden=this.listeners=this.vwr=null;this.empty=1;this.hideNotSelected=!1;this.bsTemp=null;p(this,arguments)},JV,"SelectionManager");N(c$,function(){this.listeners=[];this.bsHidden=new JU.BS;this.bsSelection=new JU.BS;this.bsFixed=new JU.BS;this.bsTemp=new JU.BS});t(c$,function(a){this.vwr=a},"JV.Viewer");c(c$,"processDeletedModelAtoms",
function(a){null!=this.bsDeleted&&JU.BSUtil.deleteBits(this.bsDeleted,a);null!=this.bsSubset&&JU.BSUtil.deleteBits(this.bsSubset,a);JU.BSUtil.deleteBits(this.bsFixed,a);JU.BSUtil.deleteBits(this.bsHidden,a);var b=JU.BSUtil.copy(this.bsSelection);JU.BSUtil.deleteBits(b,a);this.setSelectionSet(b,0)},"JU.BS");c(c$,"clear",function(){this.clearSelection(!0);this.hide(null,null,0,!0);this.setSelectionSubset(null);this.bsDeleted=null;this.setMotionFixedAtoms(null)});c(c$,"display",function(a,b,c,f){switch(c){default:c=
a.getModelAtomBitSetIncludingDeleted(-1,!1),this.bsHidden.or(c);case 1276118017:null!=b&&this.bsHidden.andNot(b);break;case 1073742119:null!=b&&this.bsHidden.or(b)}JU.BSUtil.andNot(this.bsHidden,this.bsDeleted);a.setBsHidden(this.bsHidden);f||this.vwr.reportSelection(J.i18n.GT.i(J.i18n.GT._("{0} atoms hidden"),this.bsHidden.cardinality()))},"JM.ModelSet,JU.BS,~N,~B");c(c$,"hide",function(a,b,c,f){JV.SelectionManager.setBitSet(this.bsHidden,b,c);null!=a&&a.setBsHidden(this.bsHidden);f||this.vwr.reportSelection(J.i18n.GT.i(J.i18n.GT._("{0} atoms hidden"),
this.bsHidden.cardinality()))},"JM.ModelSet,JU.BS,~N,~B");c(c$,"setSelectionSet",function(a,b){JV.SelectionManager.setBitSet(this.bsSelection,a,b);this.empty=-1;this.selectionChanged(!1)},"JU.BS,~N");c$.setBitSet=c(c$,"setBitSet",function(a,b,c){switch(c){default:a.clearAll();case 1276118017:null!=b&&a.or(b);break;case 1073742119:null!=b&&a.andNot(b)}},"JU.BS,JU.BS,~N");c(c$,"getHiddenSet",function(){return this.bsHidden});c(c$,"getHideNotSelected",function(){return this.hideNotSelected});c(c$,"setHideNotSelected",
function(a){(this.hideNotSelected=a)&&this.selectionChanged(!1)},"~B");c(c$,"isSelected",function(a){return 0<=a&&this.bsSelection.get(a)},"~N");c(c$,"select",function(a,b,c){null==a?(this.selectAll(!0),this.vwr.getBoolean(1613758476)||this.excludeSelectionSet(this.vwr.ms.getAtoms(1613758476,null)),this.vwr.getBoolean(1613758470)||this.excludeSelectionSet(this.vwr.ms.getAtoms(1613758470,null)),this.selectionChanged(!1)):this.setSelectionSet(a,b);if((a=this.vwr.getBoolean(603979880))||!c)b=this.getSelectionCount(),
a?this.vwr.reportSelection((0==b?"No atoms":1==b?"1 atom":b+" atoms")+" selected!"):c||this.vwr.reportSelection(J.i18n.GT.i(J.i18n.GT._("{0} atoms selected"),b))},"JU.BS,~N,~B");c(c$,"selectAll",function(a){var b=this.vwr.ms.ac;for(this.empty=0==b?1:0;0<=--b;)this.bsSelection.set(b);JU.BSUtil.andNot(this.bsSelection,this.bsDeleted);this.selectionChanged(a)},"~B");c(c$,"clearSelection",function(a){this.setHideNotSelected(!1);this.bsSelection.clearAll();this.empty=1;this.selectionChanged(a)},"~B");
c(c$,"isAtomSelected",function(a){return((null==this.bsSubset||this.bsSubset.get(a))&&null==this.bsDeleted||!this.bsDeleted.get(a))&&this.bsSelection.get(a)},"~N");c(c$,"setSelectedAtom",function(a,b){0>a?this.selectionChanged(!0):null!=this.bsSubset&&!this.bsSubset.get(a)||null!=this.bsDeleted&&this.bsDeleted.get(a)||(this.bsSelection.setBitTo(a,b),this.empty=b?0:-1)},"~N,~B");c(c$,"setSelectionSubset",function(a){this.bsSubset=a},"JU.BS");c(c$,"isInSelectionSubset",function(a){return 0>a||null==
this.bsSubset||this.bsSubset.get(a)},"~N");c(c$,"invertSelection",function(){JU.BSUtil.invertInPlace(this.bsSelection,this.vwr.ms.ac);this.empty=0<this.bsSelection.length()?0:1;this.selectionChanged(!1)});c(c$,"excludeSelectionSet",function(a){null==a||1==this.empty||(this.bsSelection.andNot(a),this.empty=-1)},"JU.BS");c(c$,"getSelectionCount",function(){if(1==this.empty)return 0;this.empty=1;var a;null!=this.bsSubset?(this.bsTemp.clearAll(),this.bsTemp.or(this.bsSubset),this.bsTemp.and(this.bsSelection),
a=this.bsTemp):a=this.bsSelection;a=a.cardinality();0<a&&(this.empty=0);return a});c(c$,"addListener",function(a){for(var b=this.listeners.length;0<=--b;)if(this.listeners[b]===a){this.listeners[b]=null;break}for(var c=this.listeners.length,b=c;0<=--b;)if(null==this.listeners[b]){this.listeners[b]=a;return}this.listeners=0==this.listeners.length?Array(1):JU.AU.doubleLength(this.listeners);this.listeners[c]=a},"J.api.JmolSelectionListener");c(c$,"selectionChanged",function(a){this.hideNotSelected&&
this.hide(this.vwr.ms,JU.BSUtil.copyInvert(this.bsSelection,this.vwr.ms.ac),0,a);if(!(a||0==this.listeners.length))for(a=this.listeners.length;0<=--a;)null!=this.listeners[a]&&this.listeners[a].selectionChanged(this.bsSelection)},"~B");c(c$,"deleteAtoms",function(a){var b=JU.BSUtil.copy(a);null==this.bsDeleted?this.bsDeleted=b:(b.andNot(this.bsDeleted),this.bsDeleted.or(a));this.bsHidden.andNot(this.bsDeleted);this.bsSelection.andNot(this.bsDeleted);return b.cardinality()},"JU.BS");c(c$,"getSelectedAtoms",
function(){if(null==this.bsSubset)return this.bsSelection;var a=JU.BSUtil.copy(this.bsSelection);a.and(this.bsSubset);return a});c(c$,"getSelectedAtomsNoSubset",function(){return JU.BSUtil.copy(this.bsSelection)});c(c$,"excludeAtoms",function(a,b){null!=this.bsDeleted&&a.andNot(this.bsDeleted);!b&&null!=this.bsSubset&&(a=JU.BSUtil.copy(a)).and(this.bsSubset);return a},"JU.BS,~B");c(c$,"setMotionFixedAtoms",function(a){this.bsFixed.clearAll();null!=a&&this.bsFixed.or(a)},"JU.BS");c(c$,"getMotionFixedAtoms",
function(){return this.bsFixed});C(c$,"TRUE",1,"FALSE",0,"UNKNOWN",-1)}),u("JV"),v(null,"JV.ShapeManager","java.lang.Boolean JU.BS $.P3 J.api.Interface J.c.PAL $.VDW JM.Atom JU.BSUtil JV.JC".split(" "),function(){c$=s(function(){this.navMinMax=this.bsRenderableAtoms=this.vwr=this.shapes=this.ms=null;p(this,arguments)},JV,"ShapeManager");N(c$,function(){this.navMinMax=E(4,0)});t(c$,function(a){this.vwr=a;this.bsRenderableAtoms=new JU.BS},"JV.Viewer");c(c$,"findNearestShapeAtomIndex",function(a,b,c,
f){if(null!=this.shapes)for(var g=0;g<this.shapes.length&&null==c[0];++g)null!=this.shapes[g]&&this.shapes[g].findNearestAtomIndex(a,b,c,f)},"~N,~N,~A,JU.BS");c(c$,"getShapes",function(){return this.shapes});c(c$,"getShapePropertyIndex",function(a,b,c){if(null==this.shapes||null==this.shapes[a])return null;this.vwr.setShapeErrorState(a,"get "+b);a=this.shapes[a].getProperty(b,c);this.vwr.setShapeErrorState(-1,null);return a},"~N,~S,~N");c(c$,"getShapePropertyData",function(a,b,c){if(null==this.shapes||
null==this.shapes[a])return!1;this.vwr.setShapeErrorState(a,"get "+b);a=this.shapes[a].getPropertyData(b,c);this.vwr.setShapeErrorState(-1,null);return a},"~N,~S,~A");c(c$,"getShapeIdFromObjectName",function(a){if(null!=this.shapes)for(var b=16;30>b;++b)if(null!=this.shapes[b]&&0<=this.shapes[b].getIndexFromName(a))return b;return-1},"~S");c(c$,"loadDefaultShapes",function(a){this.ms=a;if(null!=this.shapes)for(var b=0;b<this.shapes.length;++b)null!=this.shapes[b]&&this.shapes[b].setModelSet(a);this.loadShape(0);
this.loadShape(1)},"JM.ModelSet");c(c$,"loadShape",function(a){if(null==this.shapes)return null;if(null!=this.shapes[a])return this.shapes[a];if(2==a||3==a||4==a)return null;var b=JV.JC.getShapeClassName(a,!1);if(null==(b=J.api.Interface.getInterface(b,this.vwr,"shape")))return null;this.vwr.setShapeErrorState(a,"allocate");b.initializeShape(this.vwr,this.ms,a);this.vwr.setShapeErrorState(-1,null);return this.shapes[a]=b},"~N");c(c$,"refreshShapeTrajectories",function(a,b,c){var f=Integer.$valueOf(a);
a=this.vwr.getModelUndeletedAtomsBitSet(a);for(var g=0;37>g;g++)null!=this.shapes[g]&&this.setShapePropertyBs(g,"refreshTrajectories",[f,b,c],a)},"~N,JU.BS,JU.M4");c(c$,"releaseShape",function(a){null!=this.shapes&&(this.shapes[a]=null)},"~N");c(c$,"resetShapes",function(){this.vwr.noGraphicsAllowed||(this.shapes=Array(37))});c(c$,"setShapeSizeBs",function(a,b,c,f){if(null!=this.shapes){if(null==f&&(1!=a||2147483647!=b))f=this.vwr.bsA();null!=c&&(0!=c.value&&c.vdwType===J.c.VDW.TEMP)&&this.ms.getBfactor100Lo();
this.vwr.setShapeErrorState(a,"set size");(null==c?0!=b:0!=c.value)&&this.loadShape(a);null!=this.shapes[a]&&this.shapes[a].setShapeSizeRD(b,c,f);this.vwr.setShapeErrorState(-1,null)}},"~N,~N,J.atomdata.RadiusData,JU.BS");c(c$,"setLabel",function(a,b){if(null==a){if(null==this.shapes[5])return}else this.loadShape(5),this.setShapeSizeBs(5,0,null,b);this.setShapePropertyBs(5,"label",a,b)},"~O,JU.BS");c(c$,"setShapePropertyBs",function(a,b,c,f){null==this.shapes||null==this.shapes[a]||(null==f&&(f=this.vwr.bsA()),
this.vwr.setShapeErrorState(a,"set "+b),this.shapes[a].setProperty(b.intern(),c,f),this.vwr.setShapeErrorState(-1,null))},"~N,~S,~O,JU.BS");c(c$,"checkFrankclicked",function(a,b){var c=this.shapes[36];return null!=c&&c.wasClicked(a,b)},"~N,~N");c(c$,"checkObjectClicked",function(a,b,c,f,g){var e,h=null;if(0!=c&&this.vwr.getBondPicking()&&null!=(h=this.shapes[1].checkObjectClicked(a,b,c,f,!1)))return h;for(var j=0;j<JV.ShapeManager.clickableMax;j++)if(null!=(e=this.shapes[JV.ShapeManager.hoverable[j]])&&
null!=(h=e.checkObjectClicked(a,b,c,f,g)))return h;return null},"~N,~N,~N,JU.BS,~B");c(c$,"checkObjectDragged",function(a,b,c,f,g,e,h){for(var j=!1,k=0<h?h+1:37;!j&&h<k;++h)null!=this.shapes[h]&&(j=this.shapes[h].checkObjectDragged(a,b,c,f,g,e));return j},"~N,~N,~N,~N,~N,JU.BS,~N");c(c$,"checkObjectHovered",function(a,b,c,f){var g=this.shapes[1];if(f&&null!=g&&g.checkObjectHovered(a,b,c))return!0;for(f=0;f<JV.ShapeManager.hoverable.length;f++)if(g=this.shapes[JV.ShapeManager.hoverable[f]],null!=g&&
g.checkObjectHovered(a,b,c))return!0;return!1},"~N,~N,JU.BS,~B");c(c$,"deleteShapeAtoms",function(a,b){if(null!=this.shapes)for(var c=0;37>c;c++)null!=this.shapes[c]&&this.setShapePropertyBs(c,"deleteModelAtoms",a,b)},"~A,JU.BS");c(c$,"deleteVdwDependentShapes",function(a){null==a&&(a=this.vwr.bsA());null!=this.shapes[24]&&this.shapes[24].setProperty("deleteVdw",null,a);null!=this.shapes[25]&&this.shapes[25].setProperty("deleteVdw",null,a)},"JU.BS");c(c$,"getAtomShapeValue",function(a,b,c){a=JV.JC.shapeTokenIndex(a);
if(0>a||null==this.shapes[a])return 0;c=this.shapes[a].getSize(c);if(0==c){if(0==(b.shapeVisibilityFlags&this.shapes[a].vf))return 0;c=this.shapes[a].getSizeG(b)}return c/2E3},"~N,JM.Group,~N");c(c$,"getObjectMap",function(a,b){if(null!=this.shapes)for(var c=Boolean.$valueOf(b),f=16;30>f;++f)this.getShapePropertyData(f,"getNames",[a,c])},"java.util.Map,~B");c(c$,"getProperty",function(a){return a.equals("getShapes")?this.shapes:null},"~O");c(c$,"getShape",function(a){return null==this.shapes?null:
this.shapes[a]},"~N");c(c$,"mergeShapes",function(a){if(null!=a)if(null==this.shapes)this.shapes=a;else for(var b=0;b<a.length;++b)null!=a[b]&&(null==this.shapes[b]&&this.loadShape(b),this.shapes[b].merge(a[b]))},"~A");c(c$,"resetBioshapes",function(a){if(null!=this.shapes)for(var b=0;b<this.shapes.length;++b)null!=this.shapes[b]&&this.shapes[b].isBioShape&&(this.shapes[b].setModelSet(this.ms),this.shapes[b].setShapeSizeRD(0,null,a),this.shapes[b].setProperty("color",J.c.PAL.NONE,a))},"JU.BS");c(c$,
"setAtomLabel",function(a,b){null!=this.shapes&&(this.loadShape(5),this.shapes[5].setProperty("label:"+a,Integer.$valueOf(b),null))},"~S,~N");c(c$,"setModelVisibility",function(){var a=this.shapes;if(!(null==a||null==a[0])){for(var b=this.vwr.getVisibleFramesBitSet(),c=8;33>c;c++)null!=a[c]&&a[c].setModelVisibilityFlags(b);for(var f=this.vwr.getBoolean(603979922),g=this.vwr.slm.bsDeleted,e=this.ms.at,c=this.ms.ac;0<=--c;){var h=e[c];h.shapeVisibilityFlags&=-64;if(!(null!=g&&g.get(c)||!f&&1==h.getElementNumber())&&
b.get(h.mi)){var j=1;this.ms.isAtomHidden(c)||(j|=8,0!=h.madAtom&&(j|=16),h.setShapeVisibility(j,!0))}}this.ms.clearVisibleSets();for(c=0;37>c;++c)b=a[c],null!=b&&b.setAtomClickability()}});c(c$,"finalizeAtoms",function(a,b){var c=this.vwr,f=c.tm,g=this.bsRenderableAtoms;if(null!=a){var e=this.ms.getAtomSetCenter(a),h=new JU.P3;f.transformPt3f(e,h);h.add(b);f.unTransformPoint(h,h);h.sub(e);c.setAtomCoordsRelative(h,a);b.set(0,0,0)}this.ms.getRenderable(g);for(var j=this.ms.vibrations,k=null!=j&&f.vibrationOn,
e=this.ms.at,n=g.nextSetBit(0);0<=n;n=g.nextSetBit(n+1)){var h=e[n],m=k&&h.hasVibration()?f.transformPtVib(h,j[n]):f.transformPt(h);h.sX=m.x;h.sY=m.y;h.sZ=m.z;var p=Math.abs(h.madAtom);p==JM.Atom.MAD_GLOBAL&&(p=z(2E3*c.getFloat(1141899265)));h.sD=$(c.tm.scaleToScreen(m.z,p))}j=c.gdata;if(f.slabEnabled){n=c.getBoolean(603979940);f=c.getBoolean(603979939);k=j.slab;m=j.depth;if(n)for(var p=this.ms.getMolecules(),q=this.ms.getMoleculeCountInModel(-1),n=0;n<q;n++){var s=p[n],t=0,h=s.firstAtomIndex;if(g.get(h)){for(;t<
s.ac&&!j.isClippedZ(e[h].sZ-(e[h].sD>>1));t++,h++);if(t!=s.ac){h=s.firstAtomIndex;for(t=0;t<s.ac;t++)g.clear(h),e[h++].sZ=0}}}for(n=g.nextSetBit(0);0<=n;n=g.nextSetBit(n+1))if(h=e[n],j.isClippedZ(h.sZ-(f?e[n].sD>>1:0)))h.setClickable(0),p=x((f?-1:1)*h.sD/2),(h.sZ+p<k||h.sZ-p>m||!j.isInDisplayRange(h.sX,h.sY))&&g.clear(n)}if(0==this.ms.ac||!c.getShowNavigationPoint())return null;c=2147483647;j=-2147483648;f=2147483647;k=-2147483648;for(n=g.nextSetBit(0);0<=n;n=g.nextSetBit(n+1))h=e[n],h.sX<c&&(c=h.sX),
h.sX>j&&(j=h.sX),h.sY<f&&(f=h.sY),h.sY>k&&(k=h.sY);this.navMinMax[0]=c;this.navMinMax[1]=j;this.navMinMax[2]=f;this.navMinMax[3]=k;return this.navMinMax},"JU.BS,JU.P3");c(c$,"setModelSet",function(a){this.ms=this.vwr.ms=a},"JM.ModelSet");c(c$,"checkInheritedShapes",function(){null!=this.shapes[24]&&this.setShapePropertyBs(24,"remapInherited",null,null)});c(c$,"restrictSelected",function(a,b){var c=this.vwr.slm.getSelectedAtomsNoSubset();if(b){this.vwr.slm.invertSelection();var f=this.vwr.slm.bsSubset;
null!=f&&(c=this.vwr.slm.getSelectedAtomsNoSubset(),c.and(f),this.vwr.select(c,!1,0,!0),JU.BSUtil.invertInPlace(c,this.vwr.ms.ac),c.and(f))}JU.BSUtil.andNot(c,this.vwr.slm.bsDeleted);f=this.vwr.getBoolean(603979812);a||this.vwr.setBooleanProperty("bondModeOr",!0);this.setShapeSizeBs(1,0,null,null);this.setShapePropertyBs(1,"type",Integer.$valueOf(32768),null);this.setShapeSizeBs(1,0,null,null);this.setShapePropertyBs(1,"type",Integer.$valueOf(1023),null);for(var g=this.vwr.bsA(),e=21;0<=--e;)6!=e&&
null!=this.getShape(e)&&this.setShapeSizeBs(e,0,null,g);null!=this.getShape(21)&&this.setShapePropertyBs(21,"delete",g,null);this.setLabel(null,g);a||this.vwr.setBooleanProperty("bondModeOr",f);this.vwr.select(c,!1,0,!0)},"~B,~B");C(c$,"hoverable",[31,25,24,22,36]);c$.clickableMax=c$.prototype.clickableMax=JV.ShapeManager.hoverable.length-1}),u("JV"),v(["java.util.Hashtable"],["JV.Connections","$.Connection","$.StateManager","$.Scene"],["java.util.Arrays","JU.BS","$.SB","JM.Orientation","JU.BSUtil"],
function(){c$=s(function(){this.saved=this.vwr=null;this.lastCoordinates=this.lastShape=this.lastState=this.lastSelected=this.lastScene=this.lastConnections=this.lastContext=this.lastOrientation="";p(this,arguments)},JV,"StateManager");N(c$,function(){this.saved=new java.util.Hashtable});c$.getVariableList=c(c$,"getVariableList",function(a,b,c,f){var g=new JU.SB,e=0,h=Array(a.size()),j;for(a=a.entrySet().iterator();a.hasNext()&&((j=a.next())||1);){var k=j.getKey(),n=j.getValue();if((c||!k.startsWith("site_"))&&
(!f||"@"==k.charAt(0)))h[e++]=k+("@"==k.charAt(0)?" "+n.asString():" = "+JV.StateManager.varClip(k,n.escape(),b))}java.util.Arrays.sort(h,0,e);for(b=0;b<e;b++)null!=h[b]&&g.append("  ").append(h[b]).append(";\n");0==e&&!f&&g.append("# --no global user variables defined--;\n");return g.toString()},"java.util.Map,~N,~B,~B");c$.getObjectIdFromName=c(c$,"getObjectIdFromName",function(a){if(null==a)return-1;a="background axis1      axis2      axis3      boundbox   unitcell   frank      ".indexOf(a.toLowerCase());
return 0>a?a:x(a/11)},"~S");c$.getObjectNameFromId=c(c$,"getObjectNameFromId",function(a){return 0>a||8<=a?null:"background axis1      axis2      axis3      boundbox   unitcell   frank      ".substring(11*a,11*a+11).trim()},"~N");t(c$,function(a){this.vwr=a},"JV.Viewer");c(c$,"clear",function(a){this.vwr.setShowAxes(!1);this.vwr.setShowBbcage(!1);this.vwr.setShowUnitCell(!1);a.clear()},"JV.GlobalSettings");c(c$,"resetLighting",function(){this.vwr.setIntProperty("ambientPercent",45);this.vwr.setIntProperty("celShadingPower",
10);this.vwr.setIntProperty("diffusePercent",84);this.vwr.setIntProperty("phongExponent",64);this.vwr.setIntProperty("specularExponent",6);this.vwr.setIntProperty("specularPercent",22);this.vwr.setIntProperty("specularPower",40);this.vwr.setIntProperty("zDepth",0);this.vwr.setIntProperty("zShadePower",3);this.vwr.setIntProperty("zSlab",50);this.vwr.setBooleanProperty("specular",!0);this.vwr.setBooleanProperty("celShading",!1);this.vwr.setBooleanProperty("zshade",!1)});c(c$,"setCrystallographicDefaults",
function(){this.vwr.setAxesMode(603979808);this.vwr.setShowAxes(!0);this.vwr.setShowUnitCell(!0);this.vwr.setBooleanProperty("perspectiveDepth",!1)});c(c$,"setCommonDefaults",function(){this.vwr.setBooleanProperty("perspectiveDepth",!0);this.vwr.setFloatProperty("bondTolerance",0.45);this.vwr.setFloatProperty("minBondDistance",0.4);this.vwr.setIntProperty("bondingVersion",0);this.vwr.setBooleanProperty("translucent",!0)});c(c$,"setJmolDefaults",function(){this.setCommonDefaults();this.vwr.setStringProperty("defaultColorScheme",
"Jmol");this.vwr.setBooleanProperty("axesOrientationRasmol",!1);this.vwr.setBooleanProperty("zeroBasedXyzRasmol",!1);this.vwr.setIntProperty("percentVdwAtom",23);this.vwr.setIntProperty("bondRadiusMilliAngstroms",150);this.vwr.setVdwStr("auto")});c(c$,"setRasMolDefaults",function(){this.setCommonDefaults();this.vwr.setStringProperty("defaultColorScheme","RasMol");this.vwr.setBooleanProperty("axesOrientationRasmol",!0);this.vwr.setBooleanProperty("zeroBasedXyzRasmol",!0);this.vwr.setIntProperty("percentVdwAtom",
0);this.vwr.setIntProperty("bondRadiusMilliAngstroms",1);this.vwr.setVdwStr("Rasmol")});c(c$,"setPyMOLDefaults",function(){this.setCommonDefaults();this.vwr.setStringProperty("measurementUnits","ANGSTROMS");this.vwr.setBooleanProperty("zoomHeight",!0)});c$.getNoCase=c(c$,"getNoCase",function(a,b){for(var c,f=a.entrySet().iterator();f.hasNext()&&((c=f.next())||1);)if(c.getKey().equalsIgnoreCase(b))return c.getValue();return null},"java.util.Map,~S");c(c$,"listSavedStates",function(){for(var a="",b,
c=this.saved.keySet().iterator();c.hasNext()&&((b=c.next())||1);)a+="\n"+b;return a});c(c$,"deleteSavedType",function(a){for(var b=this.saved.keySet().iterator();b.hasNext();)b.next().startsWith(a)&&b.remove()},"~S");c(c$,"deleteSaved",function(a){for(var b=this.saved.keySet().iterator();b.hasNext();){var c=b.next();(c.startsWith(a)||c.endsWith("_"+a)&&c.indexOf("_")==c.lastIndexOf("_"+a))&&b.remove()}},"~S");c(c$,"saveSelection",function(a,b){a.equalsIgnoreCase("DELETE")?this.deleteSavedType("Selected_"):
(a=this.lastSelected="Selected_"+a,this.saved.put(a,JU.BSUtil.copy(b)))},"~S,JU.BS");c(c$,"restoreSelection",function(a){a=JV.StateManager.getNoCase(this.saved,0<a.length?"Selected_"+a:this.lastSelected);if(null==a)return this.vwr.select(new JU.BS,!1,0,!1),!1;this.vwr.select(a,!1,0,!1);return!0},"~S");c(c$,"saveState",function(a){a.equalsIgnoreCase("DELETE")?this.deleteSavedType("State_"):(a=this.lastState="State_"+a,this.saved.put(a,this.vwr.getStateInfo()))},"~S");c(c$,"getSavedState",function(a){a=
JV.StateManager.getNoCase(this.saved,0<a.length?"State_"+a:this.lastState);return null==a?"":a},"~S");c(c$,"saveStructure",function(a){a.equalsIgnoreCase("DELETE")?this.deleteSavedType("Shape_"):(a=this.lastShape="Shape_"+a,this.saved.put(a,this.vwr.getStructureState()))},"~S");c(c$,"getSavedStructure",function(a){a=JV.StateManager.getNoCase(this.saved,0<a.length?"Shape_"+a:this.lastShape);return null==a?"":a},"~S");c(c$,"saveCoordinates",function(a,b){a.equalsIgnoreCase("DELETE")?this.deleteSavedType("Coordinates_"):
(a=this.lastCoordinates="Coordinates_"+a,this.saved.put(a,this.vwr.getCoordinateState(b)))},"~S,JU.BS");c(c$,"getSavedCoordinates",function(a){a=JV.StateManager.getNoCase(this.saved,0<a.length?"Coordinates_"+a:this.lastCoordinates);return null==a?"":a},"~S");c(c$,"getOrientation",function(){return new JM.Orientation(this.vwr,!1,null)});c(c$,"getSavedOrientationText",function(a){var b;if(null!=a)return b=this.getOrientationFor(a),null==b?"":b.getMoveToText(!0);a=new JU.SB;for(var c=this.saved.entrySet().iterator();c.hasNext()&&
((b=c.next())||1);)b.getKey().startsWith("Orientation_")&&a.append(b.getValue().getMoveToText(!0));return a.toString()},"~S");c(c$,"saveScene",function(a,b){if(a.equalsIgnoreCase("DELETE"))this.deleteSavedType("Scene_");else{var c=new JV.Scene(b);c.saveName=this.lastScene="Scene_"+a;this.saved.put(c.saveName,c)}},"~S,java.util.Map");c(c$,"restoreScene",function(a,b){var c=JV.StateManager.getNoCase(this.saved,0<a.length?"Scene_"+a:this.lastScene);return null!=c&&c.restore(this.vwr,b)},"~S,~N");c(c$,
"saveOrientation",function(a,b){if(a.equalsIgnoreCase("DELETE"))this.deleteSavedType("Orientation_");else{var c=new JM.Orientation(this.vwr,a.equalsIgnoreCase("default"),b);c.saveName=this.lastOrientation="Orientation_"+a;this.saved.put(c.saveName,c)}},"~S,~A");c(c$,"restoreOrientation",function(a,b,c){a=this.getOrientationFor(a);return null!=a&&a.restore(b,c)},"~S,~N,~B");c(c$,"getOrientationFor",function(a){return JV.StateManager.getNoCase(this.saved,0<a.length?"Orientation_"+a:this.lastOrientation)},
"~S");c(c$,"saveContext",function(a,b){a.equalsIgnoreCase("DELETE")?this.deleteSavedType("Context_"):this.saved.put(this.lastContext="Context_"+a,b)},"~S,~O");c(c$,"getContext",function(a){return this.saved.get(0==a.length?this.lastContext:"Context_"+a)},"~S");c(c$,"saveBonds",function(a){if(a.equalsIgnoreCase("DELETE"))this.deleteSavedType("Bonds_");else{var b=new JV.Connections(this.vwr);b.saveName=this.lastConnections="Bonds_"+a;this.saved.put(b.saveName,b)}},"~S");c(c$,"restoreBonds",function(a){this.vwr.clearModelDependentObjects();
a=JV.StateManager.getNoCase(this.saved,0<a.length?"Bonds_"+a:this.lastConnections);return null!=a&&a.restore()},"~S");c$.varClip=c(c$,"varClip",function(a,b,c){0<c&&b.length>c&&(b=b.substring(0,c)+" #...more ("+b.length+" bytes -- use SHOW "+a+" or MESSAGE @"+a+" to view)");return b},"~S,~S,~N");C(c$,"OBJ_BACKGROUND",0,"OBJ_AXIS1",1,"OBJ_AXIS2",2,"OBJ_AXIS3",3,"OBJ_BOUNDBOX",4,"OBJ_UNITCELL",5,"OBJ_FRANK",6,"OBJ_MAX",8,"objectNameList","background axis1      axis2      axis3      boundbox   unitcell   frank      ");
c$=s(function(){this.scene=this.saveName=null;p(this,arguments)},JV,"Scene");t(c$,function(a){this.scene=a},"java.util.Map");c(c$,"restore",function(a,b){var c=this.scene.get("generator");null!=c&&c.generateScene(this.scene);c=this.scene.get("pymolView");return null!=c&&a.tm.moveToPyMOL(a.eval,b,c)},"JV.Viewer,~N");c$=s(function(){this.saveName=null;this.bondCount=0;this.vwr=this.connections=null;p(this,arguments)},JV,"Connections");t(c$,function(a){var b=a.ms;if(null!=b){this.vwr=a;this.bondCount=
b.bondCount;this.connections=Array(this.bondCount+1);a=b.bo;for(b=this.bondCount;0<=--b;){var c=a[b];this.connections[b]=new JV.Connection(c.atom1.i,c.atom2.i,c.mad,c.colix,c.order,c.getEnergy(),c.shapeVisibilityFlags)}}},"JV.Viewer");c(c$,"restore",function(){var a=this.vwr.ms;if(null==a)return!1;a.deleteAllBonds();for(var b=this.bondCount;0<=--b;){var c=this.connections[b],f=a.ac;c.atomIndex1>=f||c.atomIndex2>=f||(f=a.bondAtoms(a.at[c.atomIndex1],a.at[c.atomIndex2],c.order,c.mad,null,c.energy,!1,
!0),f.colix=c.colix,f.shapeVisibilityFlags=c.shapeVisibilityFlags)}for(b=this.bondCount;0<=--b;)a.bo[b].index=b;this.vwr.setShapeProperty(1,"reportAll",null);return!0});c$=s(function(){this.shapeVisibilityFlags=this.energy=this.order=this.colix=this.mad=this.atomIndex2=this.atomIndex1=0;p(this,arguments)},JV,"Connection");t(c$,function(a,b,c,f,g,e,h){this.atomIndex1=a;this.atomIndex2=b;this.mad=c;this.colix=f;this.order=g;this.energy=e;this.shapeVisibilityFlags=h},"~N,~N,~N,~N,~N,~N,~N")}),u("JV"),
v(["java.util.Hashtable"],"JV.StatusManager","java.lang.Boolean $.Float javajs.awt.Dimension JU.Lst $.PT J.api.Interface J.c.CBK JU.Logger".split(" "),function(){c$=s(function(){this.cbl=this.jsl=this.vwr=null;this.statusList="";this.allowStatusReporting=!1;this.messageQueue=null;this.statusPtr=0;this.jmolScriptCallbacks=null;this.minSyncRepeatMs=100;this.stereoSync=this.syncDisabled=this.isSynced=this.drivingSync=this.syncingMouse=this.syncingScripts=!1;this.qualityPNG=this.qualityJPG=-1;this.imageType=
null;p(this,arguments)},JV,"StatusManager");N(c$,function(){this.messageQueue=new java.util.Hashtable;this.jmolScriptCallbacks=new java.util.Hashtable});t(c$,function(a){this.vwr=a},"JV.Viewer");c(c$,"recordStatus",function(a){return this.allowStatusReporting&&0<this.statusList.length&&(this.statusList.equals("all")||0<=this.statusList.indexOf(a))},"~S");c(c$,"setStatusChanged",function(a,b,c,f){if(this.recordStatus(a)){var g=new JU.Lst;g.addLast(Integer.$valueOf(++this.statusPtr));g.addLast(a);g.addLast(Integer.$valueOf(b));
g.addLast(c);b=f?null:this.messageQueue.get(a);null==b?this.messageQueue.put(a,b=new JU.Lst):b.size()==JV.StatusManager.MAXIMUM_QUEUE_LENGTH&&b.remove(0);b.addLast(g)}},"~S,~N,~O,~B");c(c$,"getStatusChanged",function(a){var b=0<a.length&&"-"==a.charAt(0),c=0<a.length&&"+"==a.charAt(0),f=!1;b?this.statusList=JU.PT.rep(this.statusList,a.substring(1,a.length),""):(a=JU.PT.rep(a,"+",""),this.statusList.equals(a)||c&&0<=this.statusList.indexOf(a)?f=!0:(c||(this.statusList=""),this.statusList+=a,JU.Logger.debugging&&
JU.Logger.debug("StatusManager messageQueue = "+this.statusList)));a=new JU.Lst;if(f)for(var g,f=this.messageQueue.entrySet().iterator();f.hasNext()&&((g=f.next())||1);)a.addLast(g.getValue());this.messageQueue.clear();this.statusPtr=0;return a},"~S");c(c$,"setJmolStatusListener",function(a,b){this.jsl=a;this.cbl=null==b?a:b},"J.api.JmolStatusListener,J.api.JmolCallbackListener");c(c$,"setJmolCallbackListener",function(a){this.cbl=a},"J.api.JmolCallbackListener");c(c$,"jmolScriptCallback",function(a){a=
this.jmolScriptCallbacks.get(a);null!=a&&this.vwr.evalStringQuietSync(a,!0,!1);return a},"J.c.CBK");c(c$,"setCallbackFunction",function(a,b){var c=J.c.CBK.getCallback(a);System.out.println("callback set for "+a+" "+b+" "+c);if(null!=c){var f=null==b?0:7<b.length&&0==b.toLowerCase().indexOf("script:")?7:11<b.length&&0==b.toLowerCase().indexOf("jmolscript:")?11:0;0==f?this.jmolScriptCallbacks.remove(c):this.jmolScriptCallbacks.put(c,b.substring(f).trim())}null!=this.cbl&&this.cbl.setCallbackFunction(a,
b)},"~S,~S");c(c$,"notifyEnabled",function(a){return null!=this.cbl&&this.cbl.notifyEnabled(a)},"J.c.CBK");c(c$,"setStatusAppletReady",function(a,b){var c=b?this.jmolScriptCallback(J.c.CBK.APPLETREADY):null;this.notifyEnabled(J.c.CBK.APPLETREADY)&&this.cbl.notifyCallback(J.c.CBK.APPLETREADY,[c,a,Boolean.$valueOf(b),null])},"~S,~B");c(c$,"setStatusAtomMoved",function(a){var b=this.jmolScriptCallback(J.c.CBK.ATOMMOVED);this.setStatusChanged("atomMoved",-1,a,!1);this.notifyEnabled(J.c.CBK.ATOMMOVED)&&
this.cbl.notifyCallback(J.c.CBK.ATOMMOVED,[b,a])},"JU.BS");c(c$,"setStatusAtomPicked",function(a,b,c){var f=this.jmolScriptCallback(J.c.CBK.PICK);JU.Logger.info("setStatusAtomPicked("+a+","+b+")");this.setStatusChanged("atomPicked",a,b,!1);this.notifyEnabled(J.c.CBK.PICK)&&this.cbl.notifyCallback(J.c.CBK.PICK,[f,b,Integer.$valueOf(a),c])},"~N,~S,java.util.Map");c(c$,"setStatusClicked",function(a,b,c,f,g){var e=this.jmolScriptCallback(J.c.CBK.CLICK);if(!this.notifyEnabled(J.c.CBK.CLICK))return c;g=
[c,g];this.cbl.notifyCallback(J.c.CBK.CLICK,[e,Integer.$valueOf(a),Integer.$valueOf(b),Integer.$valueOf(c),Integer.$valueOf(f),g]);return g[0]},"~N,~N,~N,~N,~N");c(c$,"setStatusResized",function(a,b){var c=this.jmolScriptCallback(J.c.CBK.RESIZE);this.notifyEnabled(J.c.CBK.RESIZE)&&this.cbl.notifyCallback(J.c.CBK.RESIZE,[c,Integer.$valueOf(a),Integer.$valueOf(b)])},"~N,~N");c(c$,"haveHoverCallback",function(){return this.jmolScriptCallbacks.containsKey(J.c.CBK.HOVER)||this.notifyEnabled(J.c.CBK.HOVER)});
c(c$,"setStatusAtomHovered",function(a,b){var c=this.jmolScriptCallback(J.c.CBK.HOVER);this.notifyEnabled(J.c.CBK.HOVER)&&this.cbl.notifyCallback(J.c.CBK.HOVER,[c,b,Integer.$valueOf(a)])},"~N,~S");c(c$,"setStatusObjectHovered",function(a,b,c){var f=this.jmolScriptCallback(J.c.CBK.HOVER);this.notifyEnabled(J.c.CBK.HOVER)&&this.cbl.notifyCallback(J.c.CBK.HOVER,[f,b,Integer.$valueOf(-1),a,Float.$valueOf(c.x),Float.$valueOf(c.y),Float.$valueOf(c.z)])},"~S,~S,JU.T3");c(c$,"setFileLoadStatus",function(a,
b,c,f,g,e,h){null==a&&"resetUndo".equals(b)&&(b=this.vwr.getProperty("DATA_API","getAppConsole",null),null!=b&&b.zap(),b=this.vwr.getZapName());this.setStatusChanged("fileLoaded",g,a,!1);null!=f&&this.setStatusChanged("fileLoadError",g,f,!1);var j=this.jmolScriptCallback(J.c.CBK.LOADSTRUCT);e&&this.notifyEnabled(J.c.CBK.LOADSTRUCT)&&(e=this.vwr.getP("_smilesString"),0!=e.length&&(b=e),this.cbl.notifyCallback(J.c.CBK.LOADSTRUCT,[j,a,b,c,f,Integer.$valueOf(g),this.vwr.getP("_modelNumber"),this.vwr.getModelNumberDotted(this.vwr.ms.mc-
1),h]))},"~S,~S,~S,~S,~N,~B,Boolean");c(c$,"setStatusFrameChanged",function(a,b,c,f,g,e,h){if(null!=this.vwr.ms){var j=this.vwr.am.animationOn,k=j?-2-g:g;this.setStatusChanged("frameChanged",k,0<=g?this.vwr.getModelNumberDotted(g):"",!1);var n=this.jmolScriptCallback(J.c.CBK.ANIMFRAME);this.notifyEnabled(J.c.CBK.ANIMFRAME)&&this.cbl.notifyCallback(J.c.CBK.ANIMFRAME,[n,[k,a,b,c,f,g],h,Float.$valueOf(e)]);j||this.vwr.checkMenuUpdate()}},"~N,~N,~N,~N,~N,~N,~S");c(c$,"setStatusDragDropped",function(a,
b,c,f){this.setStatusChanged("dragDrop",0,"",!1);var g=this.jmolScriptCallback(J.c.CBK.DRAGDROP);if(!this.notifyEnabled(J.c.CBK.DRAGDROP))return!1;this.cbl.notifyCallback(J.c.CBK.DRAGDROP,[g,Integer.$valueOf(a),Integer.$valueOf(b),Integer.$valueOf(c),f]);return!0},"~N,~N,~N,~S");c(c$,"setScriptEcho",function(a,b){if(null!=a){this.setStatusChanged("scriptEcho",0,a,!1);var c=this.jmolScriptCallback(J.c.CBK.ECHO);this.notifyEnabled(J.c.CBK.ECHO)&&this.cbl.notifyCallback(J.c.CBK.ECHO,[c,a,Integer.$valueOf(b?
1:0)])}},"~S,~B");c(c$,"setStatusMeasuring",function(a,b,c,f){this.setStatusChanged(a,b,c,!1);var g=null;a.equals("measureCompleted")?(JU.Logger.info("measurement["+b+"] = "+c),g=this.jmolScriptCallback(J.c.CBK.MEASURE)):a.equals("measurePicked")&&(this.setStatusChanged("measurePicked",b,c,!1),JU.Logger.info("measurePicked "+b+" "+c));this.notifyEnabled(J.c.CBK.MEASURE)&&this.cbl.notifyCallback(J.c.CBK.MEASURE,[g,c,Integer.$valueOf(b),a,Float.$valueOf(f)])},"~S,~N,~S,~N");c(c$,"notifyError",function(a,
b,c){var f=this.jmolScriptCallback(J.c.CBK.ERROR);this.notifyEnabled(J.c.CBK.ERROR)&&this.cbl.notifyCallback(J.c.CBK.ERROR,[f,a,b,this.vwr.getShapeErrorState(),c])},"~S,~S,~S");c(c$,"notifyMinimizationStatus",function(a,b,c,f,g){var e=this.jmolScriptCallback(J.c.CBK.MINIMIZATION);this.notifyEnabled(J.c.CBK.MINIMIZATION)&&this.cbl.notifyCallback(J.c.CBK.MINIMIZATION,[e,a,b,c,f,g])},"~S,Integer,Float,Float,~S");c(c$,"setScriptStatus",function(a,b,c,f){if(-1>c){var g=-2-c;this.setStatusChanged("scriptStarted",
g,b,!1);a="script "+g+" started"}else if(null==a)return;var g=0==c?this.jmolScriptCallback(J.c.CBK.SCRIPT):null,e="Script completed"===a;if(this.recordStatus("script")){var h=null!=f;this.setStatusChanged(h?"scriptError":"scriptStatus",0,a,!1);if(h||e)this.setStatusChanged("scriptTerminated",1,"Jmol script terminated"+(h?" unsuccessfully: "+a:" successfully"),!1)}e&&(this.vwr.getBoolean(603979880)&&this.vwr.getBoolean(603979825))&&(a=[null,"script <exiting>",b,Integer.$valueOf(-1),f],this.notifyEnabled(J.c.CBK.SCRIPT)&&
this.cbl.notifyCallback(J.c.CBK.SCRIPT,a),this.processScript(a),a="Jmol script completed.");a=[g,a,b,Integer.$valueOf(e?-1:c),f];this.notifyEnabled(J.c.CBK.SCRIPT)&&this.cbl.notifyCallback(J.c.CBK.SCRIPT,a);this.processScript(a)},"~S,~S,~N,~S");c(c$,"processScript",function(a){var b=a[3].intValue();null!=this.vwr.scriptEditor&&(0<b?this.vwr.scriptEditor.notifyScriptTermination():0>b?-2==b&&this.vwr.scriptEditor.notifyScriptStart():this.vwr.scriptEditor.isVisible()&&0<a[2].length&&this.vwr.scriptEditor.notifyContext(this.vwr.getScriptContext("SE notify"),
a));null!=this.vwr.appConsole&&0==b&&this.vwr.appConsole.sendConsoleMessage(null==a[1]?null:a[1].toString())},"~A");c(c$,"doSync",function(){return this.isSynced&&this.drivingSync&&!this.syncDisabled});c(c$,"setSync",function(a){this.syncingMouse?null!=a&&this.syncSend(a,"*",0):this.syncingScripts||this.syncSend("!"+this.vwr.tm.getMoveToText(this.minSyncRepeatMs/1E3,!1),"*",0)},"~S");c(c$,"setSyncDriver",function(a){this.stereoSync&&4!=a&&(this.syncSend("SET_GRAPHICS_OFF","*",0),this.stereoSync=!1);
switch(a){case 4:if(!this.syncDisabled)return;this.syncDisabled=!1;break;case 3:this.syncDisabled=!0;break;case 5:this.stereoSync=this.isSynced=this.drivingSync=!0;break;case 1:this.isSynced=this.drivingSync=!0;break;case 2:this.drivingSync=!1;this.isSynced=!0;break;default:this.isSynced=this.drivingSync=!1}JU.Logger.debugging&&JU.Logger.debug(this.vwr.appletName+" sync mode="+a+"; synced? "+this.isSynced+"; driving? "+this.drivingSync+"; disabled? "+this.syncDisabled)},"~N");c(c$,"syncSend",function(a,
b,c){(0!=c||this.notifyEnabled(J.c.CBK.SYNC))&&this.cbl.notifyCallback(J.c.CBK.SYNC,[null,a,b,Integer.$valueOf(c)])},"~S,~S,~N");c(c$,"modifySend",function(a,b,c,f){this.notifyEnabled(J.c.CBK.STRUCTUREMODIFIED)&&this.cbl.notifyCallback(J.c.CBK.STRUCTUREMODIFIED,[null,Integer.$valueOf(c),Integer.$valueOf(a),Integer.$valueOf(b),f])},"~N,~N,~N,~S");c(c$,"getSyncMode",function(){return!this.isSynced?0:this.drivingSync?1:2});c(c$,"showUrl",function(a){null!=this.jsl&&this.jsl.showUrl(a)},"~S");c(c$,"clearConsole",
function(){null!=this.vwr.appConsole&&this.vwr.appConsole.sendConsoleMessage(null);null!=this.jsl&&this.cbl.notifyCallback(J.c.CBK.MESSAGE,null)});c(c$,"functionXY",function(a,b,c){return null==this.jsl?M(Math.abs(b),Math.abs(c),0):this.jsl.functionXY(a,b,c)},"~S,~N,~N");c(c$,"functionXYZ",function(a,b,c,f){return null==this.jsl?M(Math.abs(b),Math.abs(c),Math.abs(c),0):this.jsl.functionXYZ(a,b,c,f)},"~S,~N,~N,~N");c(c$,"jsEval",function(a){return null==this.jsl?"":this.jsl.eval(a)},"~S");c(c$,"createImage",
function(a,b,c,f,g){return null==this.jsl?null:this.jsl.createImage(a,b,null==c?f:c,g)},"~S,~S,~S,~A,~N");c(c$,"getRegistryInfo",function(){return null==this.jsl?null:this.jsl.getRegistryInfo()});c(c$,"dialogAsk",function(a,b){var c=a.equals("Save Image"),f=J.api.Interface.getOption("dialog.Dialog",this.vwr,"status");if(null==f)return null;f.setupUI(!1);c&&f.setImageInfo(this.qualityJPG,this.qualityPNG,this.imageType);var g=f.getFileNameFromDialog(this.vwr,a,b);c&&null!=g&&(this.qualityJPG=f.getQuality("JPG"),
this.qualityPNG=f.getQuality("PNG"),c=f.getType(),null!=c&&(this.imageType=c));return g},"~S,~S");c(c$,"getJspecViewProperties",function(a){return null==this.jsl?null:this.jsl.getJSpecViewProperty(null==a||0==a.length?"":":"+a)},"~S");c(c$,"resizeInnerPanel",function(a,b){return null==this.jsl?new javajs.awt.Dimension(a,b):this.jsl.resizeInnerPanel("preferredWidthHeight "+a+" "+b+";")},"~N,~N");C(c$,"MAXIMUM_QUEUE_LENGTH",16,"SYNC_OFF",0,"SYNC_DRIVER",1,"SYNC_SLAVE",2,"SYNC_DISABLE",3,"SYNC_ENABLE",
4,"SYNC_STEREO",5)}),u("JV"),v("JU.A4 $.M3 $.M4 $.P3 $.P3i $.V3 J.c.STER JU.Point3fi".split(" "),"JV.TransformManager","java.lang.Boolean $.Float java.util.Hashtable JU.P4 $.Quat $.SB J.api.Interface JU.Escape $.Logger".split(" "),function(){c$=s(function(){this.spinThread=this.vibrationThread=this.movetoThread=this.vwr=null;this.perspectiveModel=11;this.modelRadiusPixels=this.modelRadius=this.modelCenterOffset=this.cameraDistanceFromCenter=this.aperatureAngle=this.referencePlaneOffset=this.cameraScaleFactor=
0;this.navigationShiftXY=this.navigationOffset=this.navigationCenter=null;this.navigationDepthPercent=0;this.vectorTemp=this.matrixTemp=null;this.haveNotifiedNaN=!1;this.spinX=0;this.spinY=30;this.spinZ=0;this.spinFps=30;this.navZ=this.navY=this.navX=0;this.navFps=NaN;this.doTransform4D=this.isSpinSelected=this.isSpinFixed=this.isSpinInternal=!1;this.rotationCenterDefault=this.perspectiveShiftXY=this.perspectiveOffset=this.fixedRotationCenter=this.fixedRotationOffset=null;this.rotationRadiusDefault=
0;this.internalRotationCenter=this.internalTranslation=this.internalRotationAxis=this.fixedRotationAxis=null;this.internalRotationAngle=0;this.rotationAxis=this.pointT2=this.vectorT2=this.vectorT=this.axisangleT=this.matrixTemp4=this.matrixTemp3=this.matrixRotate=null;this.rotationRate=0;this.cameraSetting=this.camera=this.fixedTranslation=null;this.yTranslationFraction=this.xTranslationFraction=0.5;this.previousY=this.previousX=this.prevZoomSetting=0;this.zoomEnabled=!0;this.zmPctSet=this.zmPct=
100;this.zoomRatio=0;this.internalSlab=this.zShadeEnabled=this.slabEnabled=!1;this.depthValue=this.slabValue=this.depthPercentSetting=this.slabPercentSetting=0;this.zSlabPercentSetting=50;this.zDepthPercentSetting=0;this.zSlabPoint=null;this.slabRange=this.zDepthValue=this.zSlabValue=0;this.depthPlane=this.slabPlane=null;this.perspectiveDepth=!0;this.scale3D=!1;this.cameraDepthSetting=this.cameraDepth=3;this.visualRangeAngstroms=0;this.cameraDistance=1E3;this.scale3DAngstromsPerInch=this.scaleDefaultPixelsPerAngstrom=
this.scalePixelsPerAngstrom=this.screenPixelCount=this.height=this.width=0;this.zoomHeight=this.useZoomLarge=this.antialias=!1;this.screenHeight=this.screenWidth=0;this.ptVibTemp=this.point3iScreenTemp=this.point3fScreenTemp=this.matrixTransformInv=this.matrixTransform=null;this.navigating=!1;this.defaultMode=this.mode=0;this.matrixTest=this.aaTest1=this.ptTest3=this.ptTest2=this.ptTest1=this.untransformedPoint=null;this.vibrationOn=this.spinIsGesture=this.navOn=this.spinOn=!1;this.vibrationScale=
this.vibrationPeriodMs=this.vibrationPeriod=0;this.stereoColors=this.stereoMode=this.vibrationT=null;this.stereoDegrees=NaN;this.stereoRadians=0;this.stereoFrame=!1;this.matrixStereo=null;this.windowCentered=!1;this.ptOffset=this.bsSelectedAtoms=this.frameOffset=null;this.navMode=1;this.zoomFactor=3.4028235E38;this.navigationSlabOffset=0;this.nav=null;p(this,arguments)},JV,"TransformManager");N(c$,function(){this.navigationCenter=new JU.P3;this.navigationOffset=new JU.P3;this.navigationShiftXY=new JU.P3;
this.matrixTemp=new JU.M4;this.vectorTemp=new JU.V3;this.fixedRotationOffset=new JU.P3;this.fixedRotationCenter=new JU.P3;this.perspectiveOffset=new JU.P3;this.perspectiveShiftXY=new JU.P3;this.rotationCenterDefault=new JU.P3;this.fixedRotationAxis=new JU.A4;this.internalRotationAxis=new JU.A4;this.internalRotationCenter=JU.P3.new3(0,0,0);this.matrixRotate=new JU.M3;this.matrixTemp3=new JU.M3;this.matrixTemp4=new JU.M4;this.axisangleT=new JU.A4;this.vectorT=new JU.V3;this.vectorT2=new JU.V3;this.pointT2=
new JU.P3;this.rotationAxis=new JU.V3;this.fixedTranslation=new JU.P3;this.camera=new JU.P3;this.cameraSetting=new JU.P3;this.matrixTransform=new JU.M4;this.matrixTransformInv=new JU.M4;this.point3fScreenTemp=new JU.P3;this.point3iScreenTemp=new JU.P3i;this.ptVibTemp=new JU.Point3fi;this.untransformedPoint=new JU.P3;this.ptTest1=new JU.P3;this.ptTest2=new JU.P3;this.ptTest3=new JU.P3;this.aaTest1=new JU.A4;this.matrixTest=new JU.M3;this.vibrationT=new JU.P3;this.stereoMode=J.c.STER.NONE;this.matrixStereo=
new JU.M3;this.frameOffset=new JU.P3;this.ptOffset=new JU.P3});t(c$,function(){});c$.getTransformManager=c(c$,"getTransformManager",function(a,b,c,f){f=f?J.api.Interface.getInterface("JV.TransformManager4D",a,"tm"):new JV.TransformManager;f.vwr=a;f.setScreenParameters(b,c,!0,!1,!0,!0);return f},"JV.Viewer,~N,~N,~B");c(c$,"setDefaultPerspective",function(){this.setCameraDepthPercent(3,!0);this.setPerspectiveDepth(!0);this.setStereoDegrees(-5);this.visualRangeAngstroms=5;this.setSpinOff();this.setVibrationPeriod(0)});
c(c$,"homePosition",function(a){a&&this.setSpinOff();this.setNavOn(!1);this.navFps=10;this.navX=this.navY=this.navZ=0;this.rotationCenterDefault.setT(this.vwr.getBoundBoxCenter());this.setFixedRotationCenter(this.rotationCenterDefault);this.rotationRadiusDefault=this.setRotationRadius(0,!0);this.windowCentered=!0;this.setRotationCenterAndRadiusXYZ(null,!0);this.resetRotation();a=this.vwr.ms.getInfoM("defaultOrientationMatrix");null!=a&&this.setRotation(a);this.setZoomEnabled(!0);this.zoomToPercent(this.vwr.g.modelKitMode?
50:100);this.zmPct=this.zmPctSet;this.slabReset();this.resetFitToScreen(!0);this.vwr.isJmolDataFrame()?this.fixedRotationCenter.set(0,0,0):this.vwr.g.axesOrientationRasmol&&this.matrixRotate.setAsXRotation(3.141592653589793);this.vwr.stm.saveOrientation("default",null);1==this.mode&&this.setNavigationMode(!0)},"~B");c(c$,"setRotation",function(a){a.isRotation()?this.matrixRotate.setM3(a):this.resetRotation()},"JU.M3");c(c$,"resetRotation",function(){this.matrixRotate.setScale(1)});c(c$,"clearThreads",
function(){this.clearVibration();this.clearSpin();this.setNavOn(!1);this.stopMotion()});c(c$,"clear",function(){this.fixedRotationCenter.set(0,0,0);this.navigating=!1;this.zSlabPoint=this.depthPlane=this.slabPlane=null;this.resetNavigationPoint(!0)});c(c$,"setFixedRotationCenter",function(a){null!=a&&this.fixedRotationCenter.setT(a)},"JU.T3");c(c$,"setRotationPointXY",function(a){a=this.transformPt(a);this.fixedTranslation.set(a.x,a.y,0)},"JU.P3");c(c$,"spinXYBy",function(a,b,c){if(0==a&&0==b)null!=
this.spinThread&&this.spinIsGesture&&this.clearSpin();else{this.clearSpin();var f=JU.P3.newP(this.fixedRotationCenter),g=new JU.P3;this.transformPt3f(f,g);a=JU.P3.new3(-b,a,0);a.add(g);this.unTransformPoint(a,a);this.vwr.setInMotion(!1);this.rotateAboutPointsInternal(null,a,f,10*c,NaN,!1,!0,null,!0,null,null,null,null)}},"~N,~N,~N");c(c$,"rotateXYBy",function(a,b,c){this.rotate3DBall(a,b,c)},"~N,~N,JU.BS");c(c$,"rotateZBy",function(a,b,c){2147483647!=b&&2147483647!=c&&this.resetXYCenter(b,c);this.rotateZRadians(a/
57.29577951308232)},"~N,~N,~N");c(c$,"applyRotation",function(a,b,c,f,g,e){null==c?this.matrixRotate.mul2(a,this.matrixRotate):(this.vwr.moveAtoms(e,a,this.matrixRotate,f,this.internalRotationCenter,b,c,g),null!=f&&this.internalRotationCenter.add(f))},"JU.M3,~B,JU.BS,JU.V3,~B,JU.M4");c(c$,"rotate3DBall",function(a,b,c){this.matrixTemp3.setAsBallRotation(0.017453292,-b,-a)&&this.applyRotation(this.matrixTemp3,!1,c,null,!1,null)},"~N,~N,JU.BS");c(c$,"rotateXRadians",function(a,b){this.applyRotation(this.matrixTemp3.setAsXRotation(a),
!1,b,null,!1,null)},"~N,JU.BS");c(c$,"rotateYRadians",function(a,b){this.applyRotation(this.matrixTemp3.setAsYRotation(a),!1,b,null,!1,null)},"~N,JU.BS");c(c$,"rotateZRadians",function(a){this.applyRotation(this.matrixTemp3.setAsZRotation(a),!1,null,null,!1,null)},"~N");c(c$,"rotateAxisAngle",function(a,b){this.axisangleT.setVA(a,b);this.rotateAxisAngle2(this.axisangleT,null)},"JU.V3,~N");c(c$,"rotateAxisAngle2",function(a,b){this.applyRotation(this.matrixTemp3.setAA(a),!1,b,null,!1,null)},"JU.A4,JU.BS");
c(c$,"rotateAxisAngleAtCenter",function(a,b,c,f,g,e,h){null!=b&&this.moveRotationCenter(b,!0);this.setSpinOff();this.setNavOn(!1);if(this.vwr.headless){if(e&&3.4028235E38==g)return!1;e=!1}if(Float.isNaN(f)||0==f||0==g)return!1;null!=b&&this.setRotationPointXY(b);this.setFixedRotationCenter(b);this.rotationAxis.setT(c);this.rotationRate=f;if(e)return this.fixedRotationAxis.setVA(c,0.017453292*f),this.isSpinInternal=!1,this.isSpinFixed=!0,this.isSpinSelected=null!=h,this.setSpin(a,!0,g,null,null,h,
!1),3.4028235E38!=g;a=0.017453292*g;this.fixedRotationAxis.setVA(c,g);this.rotateAxisAngleRadiansFixed(a,h);return!0},"J.api.JmolScriptEvaluator,JU.P3,JU.V3,~N,~N,~B,JU.BS");c(c$,"rotateAxisAngleRadiansFixed",function(a,b){this.axisangleT.setAA(this.fixedRotationAxis);this.axisangleT.angle=a;this.rotateAxisAngle2(this.axisangleT,b)},"~N,JU.BS");c(c$,"rotateAboutPointsInternal",function(a,b,c,f,g,e,h,j,k,n,m,p,q){this.setSpinOff();this.setNavOn(!1);if(null==p&&(null==n||0.001>n.length())&&(h?Float.isNaN(f)||
0==f:0==g))return!1;var s=null;null==p&&(s=JU.V3.newVsub(c,b),e&&s.scale(-1),this.internalRotationCenter.setT(b),this.rotationAxis.setT(s),this.internalTranslation=null==n?null:JU.V3.newV(n));b=null!=j;if(h)return null==p?(0==g&&(g=NaN),Float.isNaN(g)?this.rotationRate=f:(q=x(Math.abs(g)/Math.abs(f)*this.spinFps+0.5),this.rotationRate=g/q*this.spinFps,null!=n&&this.internalTranslation.scale(1/q)),this.internalRotationAxis.setVA(s,0.017453292*(Float.isNaN(this.rotationRate)?0:this.rotationRate)),this.isSpinInternal=
!0,this.isSpinFixed=!1,this.isSpinSelected=b):g=f,this.setSpin(a,!0,g,m,p,j,k),!Float.isNaN(g);a=0.017453292*g;this.internalRotationAxis.setVA(s,a);this.rotateAxisAngleRadiansInternal(a,j,q);return!1},"J.api.JmolScriptEvaluator,JU.T3,JU.T3,~N,~N,~B,~B,JU.BS,~B,JU.V3,JU.Lst,~A,JU.M4");c(c$,"rotateAxisAngleRadiansInternal",function(a,b,c){this.internalRotationAngle=a;this.vectorT.set(this.internalRotationAxis.x,this.internalRotationAxis.y,this.internalRotationAxis.z);this.matrixRotate.rotate2(this.vectorT,
this.vectorT2);this.axisangleT.setVA(this.vectorT2,a);this.applyRotation(this.matrixTemp3.setAA(this.axisangleT),!0,b,this.internalTranslation,1E6<a,c);null==b&&this.getNewFixedRotationCenter()},"~N,JU.BS,JU.M4");c(c$,"getNewFixedRotationCenter",function(){this.axisangleT.setAA(this.internalRotationAxis);this.axisangleT.angle=-this.internalRotationAngle;this.matrixTemp4.setToAA(this.axisangleT);this.vectorT.setT(this.internalRotationCenter);this.pointT2.sub2(this.fixedRotationCenter,this.vectorT);
var a=this.matrixTemp4.rotTrans2(this.pointT2,new JU.P3);a.add(this.vectorT);this.setRotationCenterAndRadiusXYZ(a,!1)});c(c$,"setTranslationFractions",function(){this.xTranslationFraction=this.fixedTranslation.x/this.width;this.yTranslationFraction=this.fixedTranslation.y/this.height});c(c$,"centerAt",function(a,b,c){null==c?this.translateXYBy(a,b):(this.windowCentered&&this.vwr.setBooleanProperty("windowCentered",!1),this.fixedTranslation.x=a,this.fixedTranslation.y=b,this.setFixedRotationCenter(c))},
"~N,~N,JU.P3");c(c$,"percentToPixels",function(a,b){switch(a){case "x":return x(Math.floor(b/100*this.width));case "y":return x(Math.floor(b/100*this.height));case "z":return x(Math.floor(b/100*this.screenPixelCount))}return 0},"~S,~N");c(c$,"angstromsToPixels",function(a){return x(Math.floor(this.scalePixelsPerAngstrom*a))},"~N");c(c$,"translateXYBy",function(a,b){this.fixedTranslation.x+=a;this.fixedTranslation.y+=b;this.setTranslationFractions()},"~N,~N");c(c$,"setCamera",function(a,b){this.cameraSetting.set(a,
b,0==a&&0==b?0:1)},"~N,~N");c(c$,"translateToPercent",function(a,b){switch(a){case "x":this.xTranslationFraction=0.5+b/100;this.fixedTranslation.x=this.width*this.xTranslationFraction;break;case "y":this.yTranslationFraction=0.5+b/100;this.fixedTranslation.y=this.height*this.yTranslationFraction;break;case "z":1==this.mode&&this.setNavigationDepthPercent(b)}},"~S,~N");c(c$,"getTranslationXPercent",function(){return 0==this.width?0:100*(this.fixedTranslation.x-this.width/2)/this.width});c(c$,"getTranslationYPercent",
function(){return 0==this.height?0:100*(this.fixedTranslation.y-this.height/2)/this.height});c(c$,"getTranslationScript",function(){var a="",b=this.getTranslationXPercent();0!=b&&(a+="translate x "+b+";");b=this.getTranslationYPercent();0!=b&&(a+="translate y "+b+";");return a});c(c$,"getOrientationText",function(a){switch(a){case 4130:return this.getMoveToText(1,!1);case 1073742132:return JU.Quat.newM(this.vwr.tm.matrixRotate).toString();case 1073742178:return a=new JU.SB,JV.TransformManager.truncate2(a,
this.getTranslationXPercent()),JV.TransformManager.truncate2(a,this.getTranslationYPercent()),a.toString();default:return this.getMoveToText(1,!0)+"\n#OR\n"+this.getRotateZyzText(!0)}},"~N");c(c$,"getOrientationInfo",function(){var a=new java.util.Hashtable;a.put("moveTo",this.getMoveToText(1,!1));a.put("center","center "+this.getCenterText());a.put("centerPt",this.fixedRotationCenter);var b=new JU.A4;b.setM(this.matrixRotate);a.put("axisAngle",b);a.put("quaternion",JU.Quat.newM(this.matrixRotate).toPoint4f());
a.put("rotationMatrix",this.matrixRotate);a.put("rotateZYZ",this.getRotateZyzText(!1));a.put("rotateXYZ",this.getRotateXyzText());a.put("transXPercent",Float.$valueOf(this.getTranslationXPercent()));a.put("transYPercent",Float.$valueOf(this.getTranslationYPercent()));a.put("zoom",Float.$valueOf(this.zmPct));a.put("modelRadius",Float.$valueOf(this.modelRadius));1==this.mode&&(a.put("navigationCenter","navigate center "+JU.Escape.eP(this.navigationCenter)),a.put("navigationOffsetXPercent",Float.$valueOf(this.getNavigationOffsetPercent("X"))),
a.put("navigationOffsetYPercent",Float.$valueOf(this.getNavigationOffsetPercent("Y"))),a.put("navigationDepthPercent",Float.$valueOf(this.navigationDepthPercent)));return a});c(c$,"getRotation",function(a){a.setM3(this.matrixRotate)},"JU.M3");c(c$,"setZoomHeight",function(a,b){this.zoomHeight=a;this.scaleFitToScreen(!1,b,!1,!0)},"~B,~B");c(c$,"zoomBy",function(a){20<a?a=20:-20>a&&(a=-20);var b=a*this.zmPctSet/50;0==b&&(b=0<a?1:0>b?-1:0);this.zoomRatio=(b+this.zmPctSet)/this.zmPctSet;this.zmPctSet+=
b},"~N");c(c$,"zoomByFactor",function(a,b,c){!(0>=a)&&this.zoomEnabled&&(1!=this.mode?(this.zoomRatio=a,this.zmPctSet*=a,this.resetXYCenter(b,c)):this.getNav()&&this.nav.zoomByFactor(a,b,c))},"~N,~N,~N");c(c$,"zoomToPercent",function(a){this.zmPctSet=a;this.zoomRatio=0},"~N");c(c$,"translateZBy",function(a){a>=this.screenPixelCount||(a=this.scalePixelsPerAngstrom/(1-1*a/this.screenPixelCount),a>=this.screenPixelCount||(a=100*(a/this.scaleDefaultPixelsPerAngstrom),this.zoomRatio=a/this.zmPctSet,this.zmPctSet=
a))},"~N");c(c$,"resetXYCenter",function(a,b){if(!(2147483647==a||2147483647==b)){this.windowCentered&&this.vwr.setBooleanProperty("windowCentered",!1);var c=new JU.P3;this.transformPt3f(this.fixedRotationCenter,c);c.set(a,b,c.z);this.unTransformPoint(c,c);this.fixedTranslation.set(a,b,0);this.setFixedRotationCenter(c)}},"~N,~N");c(c$,"zoomByPercent",function(a){var b=a*this.zmPctSet/100;0==b&&(b=0>a?-1:1);this.zoomRatio=(b+this.zmPctSet)/this.zmPctSet;this.zmPctSet+=b},"~N");c(c$,"setScaleAngstromsPerInch",
function(a){if(this.scale3D=0<a)this.scale3DAngstromsPerInch=a;this.perspectiveDepth=!this.scale3D},"~N");c(c$,"setSlabRange",function(a){this.slabRange=a},"~N");c(c$,"setSlabEnabled",function(a){this.slabEnabled=a;this.vwr.g.setB("slabEnabled",a)},"~B");c(c$,"setZShadeEnabled",function(a){this.zShadeEnabled=a;this.vwr.g.setB("zShade",a)},"~B");c(c$,"setZoomEnabled",function(a){this.zoomEnabled=a;this.vwr.g.setB("zoomEnabled",a)},"~B");c(c$,"slabReset",function(){this.slabToPercent(100);this.depthToPercent(0);
this.slabPlane=this.depthPlane=null;this.setSlabEnabled(!1);this.setZShadeEnabled(!1)});c(c$,"getSlabPercentSetting",function(){return this.slabPercentSetting});c(c$,"slabByPercentagePoints",function(a){this.slabPlane=null;this.slabPercentSetting+=a;this.slabDepthChanged();this.depthPercentSetting>=this.slabPercentSetting&&(this.depthPercentSetting=this.slabPercentSetting-1)},"~N");c(c$,"slabDepthChanged",function(){this.vwr.g.setI("slab",this.slabPercentSetting);this.vwr.g.setI("depth",this.depthPercentSetting)});
c(c$,"depthByPercentagePoints",function(a){this.depthPlane=null;this.depthPercentSetting+=a;this.slabPercentSetting<=this.depthPercentSetting&&(this.slabPercentSetting=this.depthPercentSetting+1);this.slabDepthChanged()},"~N");c(c$,"slabDepthByPercentagePoints",function(a){this.depthPlane=this.slabPlane=null;this.slabPercentSetting+=a;this.depthPercentSetting+=a;this.slabDepthChanged()},"~N");c(c$,"slabToPercent",function(a){this.vwr.setFloatProperty("slabRange",0);this.slabPercentSetting=a;this.slabPlane=
null;this.depthPercentSetting>=this.slabPercentSetting&&(this.depthPercentSetting=this.slabPercentSetting-1);this.slabDepthChanged()},"~N");c(c$,"depthToPercent",function(a){this.vwr.g.setI("depth",a);this.depthPercentSetting=a;this.slabPercentSetting<=this.depthPercentSetting&&(this.slabPercentSetting=this.depthPercentSetting+1);this.slabDepthChanged()},"~N");c(c$,"zSlabToPercent",function(a){this.zSlabPercentSetting=a;this.zDepthPercentSetting>this.zSlabPercentSetting&&(this.zDepthPercentSetting=
a)},"~N");c(c$,"zDepthToPercent",function(a){this.zDepthPercentSetting=a;this.zDepthPercentSetting>this.zSlabPercentSetting&&(this.zSlabPercentSetting=a)},"~N");c(c$,"slabInternal",function(a,b){b?(this.depthPlane=a,this.depthPercentSetting=0):(this.slabPlane=a,this.slabPercentSetting=100)},"JU.P4,~B");c(c$,"setSlabDepthInternal",function(a){this.finalizeTransformParameters();a?this.depthPlane=null:this.slabPlane=null;this.slabInternal(this.getSlabDepthPlane(a),a)},"~B");c(c$,"getSlabDepthPlane",
function(a){if(a){if(null!=this.depthPlane)return this.depthPlane}else if(null!=this.slabPlane)return this.slabPlane;var b=this.matrixTransform;return JU.P4.new4(-b.m20,-b.m21,-b.m22,-b.m23+(a?this.depthValue:this.slabValue))},"~B");c(c$,"getCameraFactors",function(){this.aperatureAngle=360*Math.atan2(this.screenPixelCount/2,this.referencePlaneOffset)/3.141592653589793;this.cameraDistanceFromCenter=this.referencePlaneOffset/this.scalePixelsPerAngstrom;var a=JU.P3.new3(x(this.screenWidth/2),x(this.screenHeight/
2),this.referencePlaneOffset);this.unTransformPoint(a,a);var b=JU.P3.new3(x(this.screenWidth/2),x(this.screenHeight/2),0);this.vwr.tm.unTransformPoint(b,b);b.sub(this.fixedRotationCenter);var c=JU.P3.new3(x(this.screenWidth/2),x(this.screenHeight/2),this.cameraDistanceFromCenter*this.scalePixelsPerAngstrom);this.vwr.tm.unTransformPoint(c,c);c.sub(this.fixedRotationCenter);b.add(c);return[a,b,this.fixedRotationCenter,JU.P3.new3(this.cameraDistanceFromCenter,this.aperatureAngle,this.scalePixelsPerAngstrom)]});
c(c$,"setPerspectiveDepth",function(a){this.perspectiveDepth!=a&&(this.perspectiveDepth=a,this.vwr.g.setB("perspectiveDepth",a),this.resetFitToScreen(!1))},"~B");c(c$,"getPerspectiveDepth",function(){return this.perspectiveDepth});c(c$,"setCameraDepthPercent",function(a,b){this.resetNavigationPoint(b);var c=0>a?-a/100:a;0!=c&&(this.cameraDepthSetting=c,this.vwr.g.setF("cameraDepth",this.cameraDepthSetting),this.cameraDepth=NaN)},"~N,~B");c(c$,"getCameraDepth",function(){return this.cameraDepthSetting});
c(c$,"setScreenParameters0",function(a,b,c,f,g,e){2147483647!=a&&(this.screenWidth=a,this.screenHeight=b,this.useZoomLarge=c,this.width=(this.antialias=f)?2*a:a,this.height=f?2*b:b,this.scaleFitToScreen(!1,c,g,e))},"~N,~N,~B,~B,~B,~B");c(c$,"setAntialias",function(a){var b=this.antialias!=a;this.width=(this.antialias=a)?2*this.screenWidth:this.screenWidth;this.height=this.antialias?2*this.screenHeight:this.screenHeight;b&&this.scaleFitToScreen(!1,this.useZoomLarge,!1,!1)},"~B");c(c$,"defaultScaleToScreen",
function(a){return this.screenPixelCount/2/a},"~N");c(c$,"resetFitToScreen",function(a){this.scaleFitToScreen(a,this.vwr.g.zoomLarge,!0,!0)},"~B");c(c$,"scaleFitToScreen",function(a,b,c,f){0==this.width||0==this.height?this.screenPixelCount=1:(this.fixedTranslation.set(this.width*(a?0.5:this.xTranslationFraction),this.height*(a?0.5:this.yTranslationFraction),0),this.setTranslationFractions(),a&&this.camera.set(0,0,0),f&&this.resetNavigationPoint(c),this.zoomHeight&&(b=this.height>this.width),this.screenPixelCount=
b==this.height>this.width?this.height:this.width);2<this.screenPixelCount&&(this.screenPixelCount-=2);this.scaleDefaultPixelsPerAngstrom=this.defaultScaleToScreen(this.modelRadius)},"~B,~B,~B,~B");c(c$,"scaleToScreen",function(a,b){if(0==b||2>a)return 0;var c=this.scaleToPerspective(a,b*this.scalePixelsPerAngstrom/1E3);return 0<c?c:1},"~N,~N");c(c$,"unscaleToScreen",function(a,b){var c=b/this.scalePixelsPerAngstrom;return this.perspectiveDepth?c/this.getPerspectiveFactor(a):c},"~N,~N");c(c$,"scaleToPerspective",
function(a,b){return this.perspectiveDepth?b*this.getPerspectiveFactor(a):b},"~N,~N");c(c$,"setNavigationMode",function(a){this.mode=a?1:this.defaultMode;this.resetNavigationPoint(!0)},"~B");c(c$,"isNavigating",function(){return this.navigating||this.navOn});c(c$,"finalizeTransformParameters",function(){this.haveNotifiedNaN=!1;this.fixedRotationOffset.setT(this.fixedTranslation);this.camera.setT(this.cameraSetting);this.internalSlab=this.slabEnabled&&(null!=this.slabPlane||null!=this.depthPlane);
var a=this.getZoomSetting();this.zmPct!=a&&(this.zmPct=a,this.vwr.g.fontCaching||this.vwr.gdata.clearFontCache());this.calcCameraFactors();this.calcTransformMatrix();1==this.mode?this.calcNavigationPoint():this.calcSlabAndDepthValues()});c(c$,"getZoomSetting",function(){5>this.zmPctSet&&(this.zmPctSet=5);2E5<this.zmPctSet&&(this.zmPctSet=2E5);return this.zoomEnabled||1==this.mode?this.zmPctSet:100});c(c$,"calcSlabAndDepthValues",function(){this.slabValue=1>this.slabRange?this.zValueFromPercent(this.slabPercentSetting):
x(Math.floor(this.modelCenterOffset*this.slabRange/(2*this.modelRadius)*(this.zmPctSet/100)));this.depthValue=this.zValueFromPercent(this.depthPercentSetting);this.zSlabPercentSetting==this.zDepthPercentSetting?(this.zSlabValue=this.slabValue,this.zDepthValue=this.depthValue):(this.zSlabValue=this.zValueFromPercent(this.zSlabPercentSetting),this.zDepthValue=this.zValueFromPercent(this.zDepthPercentSetting));if(null!=this.zSlabPoint)try{this.transformPt3f(this.zSlabPoint,this.pointT2),this.zSlabValue=
z(this.pointT2.z)}catch(a){if(!B(a,Exception))throw a;}this.vwr.g.setO("_slabPlane",JU.Escape.eP4(this.getSlabDepthPlane(!1)));this.vwr.g.setO("_depthPlane",JU.Escape.eP4(this.getSlabDepthPlane(!0)));this.slabEnabled||(this.slabValue=0,this.depthValue=2147483647)});c(c$,"zValueFromPercent",function(a){return x(Math.floor((1-a/50)*this.modelRadiusPixels+this.modelCenterOffset))},"~N");c(c$,"calcTransformMatrix",function(){this.matrixTransform.setIdentity();this.vectorTemp.sub2(this.frameOffset,this.fixedRotationCenter);
this.matrixTransform.setTranslation(this.vectorTemp);this.matrixTemp.setToM3(this.stereoFrame?this.matrixStereo:this.matrixRotate);this.matrixTransform.mul2(this.matrixTemp,this.matrixTransform);this.matrixTemp.setIdentity();this.matrixTemp.m00=this.matrixTemp.m11=this.matrixTemp.m22=this.scalePixelsPerAngstrom;this.matrixTemp.m11=this.matrixTemp.m22=-this.scalePixelsPerAngstrom;this.matrixTransform.mul2(this.matrixTemp,this.matrixTransform);this.matrixTransform.m23+=this.modelCenterOffset;try{this.matrixTransformInv.setM4(this.matrixTransform).invert()}catch(a){if(B(a,
Exception))System.out.println("ERROR INVERTING matrixTransform!");else throw a;}});c(c$,"rotatePoint",function(a,b){this.matrixRotate.rotate2(a,b);b.y=-b.y},"JU.T3,JU.T3");c(c$,"getScreenTemp",function(a){this.matrixTransform.rotTrans2(a,this.point3fScreenTemp)},"JU.T3");c(c$,"transformPoints",function(a,b,c){for(;0<=--a;)c[a].setT(this.transformPt(b[a]))},"~N,~A,~A");c(c$,"transformPtScr",function(a,b){b.setT(this.transformPt(a))},"JU.T3,JU.P3i");c(c$,"transformPtNoClip",function(a,b){this.applyPerspective(a,
null);b.setT(this.point3fScreenTemp)},"JU.P3,JU.P3");c(c$,"transformPt",function(a){return this.applyPerspective(a,this.internalSlab?a:null)},"JU.T3");c(c$,"transformPtVib",function(a,b){this.ptVibTemp.setT(a);return this.applyPerspective(this.getVibrationPoint(b,this.ptVibTemp,NaN),a)},"JU.P3,JU.Vibration");c(c$,"getVibrationPoint",function(a,b,c){a.setTempPoint(b,this.vibrationT,Float.isNaN(c)?this.vibrationScale:c,this.vwr.g.modulationScale);return b},"JU.Vibration,JU.T3,~N");c(c$,"transformPt3f",
function(a,b){this.applyPerspective(a,a);b.setT(this.point3fScreenTemp)},"JU.T3,JU.P3");c(c$,"transformPt2D",function(a){-3.4028235E38==a.z?(this.point3iScreenTemp.x=x(Math.floor(a.x/100*this.screenWidth)),this.point3iScreenTemp.y=x(Math.floor((1-a.y/100)*this.screenHeight))):(this.point3iScreenTemp.x=z(a.x),this.point3iScreenTemp.y=this.screenHeight-z(a.y));this.antialias&&(this.point3iScreenTemp.x<<=1,this.point3iScreenTemp.y<<=1);this.matrixTransform.rotTrans2(this.fixedRotationCenter,this.point3fScreenTemp);
this.point3iScreenTemp.z=z(this.point3fScreenTemp.z);return this.point3iScreenTemp},"JU.T3");c(c$,"applyPerspective",function(a,b){this.getScreenTemp(a);var c=this.point3fScreenTemp.z;Float.isNaN(c)?(!this.haveNotifiedNaN&&JU.Logger.debugging&&JU.Logger.debug("NaN seen in TransformPoint"),this.haveNotifiedNaN=!0,c=this.point3fScreenTemp.z=1):0>=c&&(c=this.point3fScreenTemp.z=1);switch(this.mode){case 1:this.point3fScreenTemp.x-=this.navigationShiftXY.x;this.point3fScreenTemp.y-=this.navigationShiftXY.y;
break;case 2:this.point3fScreenTemp.x+=this.perspectiveShiftXY.x,this.point3fScreenTemp.y+=this.perspectiveShiftXY.y}this.perspectiveDepth&&(c=this.getPerspectiveFactor(c),this.point3fScreenTemp.x*=c,this.point3fScreenTemp.y*=c);switch(this.mode){case 1:this.point3fScreenTemp.x+=this.navigationOffset.x;this.point3fScreenTemp.y+=this.navigationOffset.y;break;case 2:this.point3fScreenTemp.x-=this.perspectiveShiftXY.x,this.point3fScreenTemp.y-=this.perspectiveShiftXY.y;case 0:this.point3fScreenTemp.x+=
this.fixedRotationOffset.x,this.point3fScreenTemp.y+=this.fixedRotationOffset.y}Float.isNaN(this.point3fScreenTemp.x)&&!this.haveNotifiedNaN&&(JU.Logger.debugging&&JU.Logger.debug("NaN found in transformPoint "),this.haveNotifiedNaN=!0);this.point3iScreenTemp.set(z(this.point3fScreenTemp.x),z(this.point3fScreenTemp.y),z(this.point3fScreenTemp.z));if(null!=b&&(null!=this.slabPlane&&0<b.x*this.slabPlane.x+b.y*this.slabPlane.y+b.z*this.slabPlane.z+this.slabPlane.w||null!=this.depthPlane&&0>b.x*this.depthPlane.x+
b.y*this.depthPlane.y+b.z*this.depthPlane.z+this.depthPlane.w))this.point3iScreenTemp.z=1;return this.point3iScreenTemp},"JU.T3,JU.T3");c(c$,"transformVector",function(a,b){this.matrixTransform.rotate2(a,b)},"JU.V3,JU.V3");c(c$,"move",function(a,b,c,f,g,e,h){this.movetoThread=J.api.Interface.getOption("thread.MoveToThread",this.vwr,"tm");this.movetoThread.setManager(this,this.vwr,[b,f,[c,g,e,h]]);0<e&&this.movetoThread.setEval(a);this.movetoThread.run()},"J.api.JmolScriptEvaluator,JU.V3,~N,JU.V3,~N,~N,~N");
c(c$,"isInPosition",function(a,b){if(Float.isNaN(b))return!0;this.aaTest1.setVA(a,b/57.29577951308232);this.ptTest1.set(4.321,1.23456,3.14159);this.getRotation(this.matrixTest);this.matrixTest.rotate2(this.ptTest1,this.ptTest2);this.matrixTest.setAA(this.aaTest1).rotate2(this.ptTest1,this.ptTest3);return 0.1>this.ptTest3.distance(this.ptTest2)},"JU.V3,~N");c(c$,"moveToPyMOL",function(a,b,c){var f=JU.M3.newA9(c);f.invert();var g=c[9],e=-c[10],h=-c[11],j=JU.P3.new3(c[12],c[13],c[14]),k=c[15],n=c[16],
m=c[17];this.setPerspectiveDepth(!(0<=m));var m=Math.abs(m)/2,p=Math.tan(3.141592653589793*m/180),m=h*p,p=0.5/p-0.5,q=50/m;0<k&&(k=50+z((h-k)*q),h=50+z((h-n)*q),this.setSlabEnabled(!0),this.slabToPercent(k),this.depthToPercent(h),21==c.length&&(n=0!=c[18],q=0!=c[19],c=c[20],this.setZShadeEnabled(n),n&&(q?this.vwr.setIntProperty("zSlab",z(Math.min(100,k+c*(h-k)))):this.vwr.setIntProperty("zSlab",z((k+h)/2)),this.vwr.setIntProperty("zDepth",h))));this.moveTo(a,b,j,null,0,f,100,NaN,NaN,m,null,NaN,NaN,
NaN,p,g,e);return!0},"J.api.JmolScriptEvaluator,~N,~A");c(c$,"moveTo",function(a,b,c,f,g,e,h,j,k,n,m,p,q,s,t,u,v){if(null==e)if(e=new JU.M3,f=JU.V3.newV(f),Float.isNaN(g))e.m00=NaN;else if(0.01>g&&-0.01<g)e.setScale(1);else{if(0==f.x&&0==f.y&&0==f.z)return;var x=new JU.A4;x.setVA(f,g/57.29577951308232);e.setAA(x)}u==this.cameraSetting.x&&(u=NaN);v==this.cameraSetting.y&&(v=NaN);t==this.cameraDepth&&(t=NaN);Float.isNaN(u)||(j=50*u/n/this.width*this.screenPixelCount);Float.isNaN(v)||(k=50*v/n/this.height*
this.screenPixelCount);g=null==c?this.scaleDefaultPixelsPerAngstrom:this.defaultScaleToScreen(n);if(0>=b)this.setAll(c,e,m,h,j,k,n,g,s,p,q,t,u,v),this.vwr.moveUpdate(b),this.vwr.finalizeTransformParameters();else try{null==this.movetoThread&&(this.movetoThread=J.api.Interface.getOption("thread.MoveToThread",this.vwr,"tm"));var z=this.movetoThread.setManager(this,this.vwr,[c,e,m,[b,h,j,k,n,g,s,p,q,t,u,v]]);0>=z||this.vwr.g.waitForMoveTo?(0<z&&this.movetoThread.setEval(a),this.movetoThread.run(),this.vwr.isSingleThreaded||
(this.movetoThread=null)):this.movetoThread.start()}catch(A){if(!B(A,Exception))throw A;}},"J.api.JmolScriptEvaluator,~N,JU.P3,JU.T3,~N,JU.M3,~N,~N,~N,~N,JU.P3,~N,~N,~N,~N,~N,~N");c(c$,"setAll",function(a,b,c,f,g,e,h,j,k,n,m,p,q,s){Float.isNaN(b.m00)||this.setRotation(b);null!=a&&this.moveRotationCenter(a,!this.windowCentered);null!=c&&1==this.mode&&this.navigationCenter.setT(c);Float.isNaN(p)||this.setCameraDepthPercent(p,!1);!Float.isNaN(q)&&!Float.isNaN(s)&&this.setCamera(q,s);Float.isNaN(f)||
this.zoomToPercent(f);Float.isNaN(h)||(this.modelRadius=h);Float.isNaN(j)||(this.scaleDefaultPixelsPerAngstrom=j);!Float.isNaN(g)&&!Float.isNaN(e)&&(this.translateToPercent("x",g),this.translateToPercent("y",e));1==this.mode&&(!Float.isNaN(n)&&!Float.isNaN(m)&&this.navTranslatePercentOrTo(0,n,m),Float.isNaN(k)||this.setNavigationDepthPercent(k))},"JU.P3,JU.M3,JU.P3,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");c(c$,"stopMotion",function(){this.movetoThread=null});c(c$,"getRotationText",function(){this.axisangleT.setM(this.matrixRotate);
var a=57.29577951308232*this.axisangleT.angle,b=new JU.SB;this.vectorT.set(this.axisangleT.x,this.axisangleT.y,this.axisangleT.z);if(0.01>a)return"{0 0 1 0}";this.vectorT.normalize();this.vectorT.scale(1E3);b.append("{");JV.TransformManager.truncate0(b,this.vectorT.x);JV.TransformManager.truncate0(b,this.vectorT.y);JV.TransformManager.truncate0(b,this.vectorT.z);JV.TransformManager.truncate2(b,a);b.append("}");return b.toString()});c(c$,"getMoveToText",function(a,b){this.finalizeTransformParameters();
var c=new JU.SB;c.append("moveto ");b&&c.append("/* time, axisAngle */ ");c.appendF(a);c.append(" ").append(this.getRotationText());b&&c.append(" /* zoom, translation */ ");JV.TransformManager.truncate2(c,this.zmPctSet);JV.TransformManager.truncate2(c,this.getTranslationXPercent());JV.TransformManager.truncate2(c,this.getTranslationYPercent());c.append(" ");b&&c.append(" /* center, rotationRadius */ ");c.append(this.getCenterText());c.append(" ").appendF(this.modelRadius);c.append(this.getNavigationText(b));
b&&c.append(" /* cameraDepth, cameraX, cameraY */ ");JV.TransformManager.truncate2(c,this.cameraDepth);JV.TransformManager.truncate2(c,this.cameraSetting.x);JV.TransformManager.truncate2(c,this.cameraSetting.y);c.append(";");return c.toString()},"~N,~B");c(c$,"getCenterText",function(){return JU.Escape.eP(this.fixedRotationCenter)});c(c$,"getRotateXyzText",function(){var a=new JU.SB,b=this.matrixRotate.m20,c=-(57.29577951308232*Math.asin(b)),f;0.999<b||-0.999>b?(b=-(57.29577951308232*Math.atan2(this.matrixRotate.m12,
this.matrixRotate.m11)),f=0):(b=57.29577951308232*Math.atan2(this.matrixRotate.m21,this.matrixRotate.m22),f=57.29577951308232*Math.atan2(this.matrixRotate.m10,this.matrixRotate.m00));a.append("reset");a.append(";center ").append(this.getCenterText());0!=b&&(a.append("; rotate x"),JV.TransformManager.truncate2(a,b));0!=c&&(a.append("; rotate y"),JV.TransformManager.truncate2(a,c));0!=f&&(a.append("; rotate z"),JV.TransformManager.truncate2(a,f));a.append(";");this.addZoomTranslationNavigationText(a);
return a.toString()});c(c$,"addZoomTranslationNavigationText",function(a){100!=this.zmPct&&(a.append(" zoom"),JV.TransformManager.truncate2(a,this.zmPct),a.append(";"));var b=this.getTranslationXPercent();0!=b&&(a.append(" translate x"),JV.TransformManager.truncate2(a,b),a.append(";"));b=this.getTranslationYPercent();0!=b&&(a.append(" translate y"),JV.TransformManager.truncate2(a,b),a.append(";"));if(this.modelRadius!=this.rotationRadiusDefault||10==this.modelRadius)a.append(" set rotationRadius"),
JV.TransformManager.truncate2(a,this.modelRadius),a.append(";");1==this.mode&&(a.append("navigate 0 center ").append(JU.Escape.eP(this.navigationCenter)),a.append(";navigate 0 translate"),JV.TransformManager.truncate2(a,this.getNavigationOffsetPercent("X")),JV.TransformManager.truncate2(a,this.getNavigationOffsetPercent("Y")),a.append(";navigate 0 depth "),JV.TransformManager.truncate2(a,this.navigationDepthPercent),a.append(";"))},"JU.SB");c(c$,"getRotateZyzText",function(a){var b=new JU.SB,c=this.vwr.ms.getInfoM("defaultOrientationMatrix");
null==c?c=this.matrixRotate:(c=JU.M3.newM3(c),c.invert(),c.mul2(this.matrixRotate,c));var f=c.m22,g=57.29577951308232*Math.acos(f);0.999<f||-0.999>f?(f=57.29577951308232*Math.atan2(c.m10,c.m11),c=0):(f=57.29577951308232*Math.atan2(c.m21,-c.m20),c=57.29577951308232*Math.atan2(c.m12,c.m02));0!=f&&(0!=g&&0!=c&&a)&&b.append("#Follows Z-Y-Z convention for Euler angles\n");b.append("reset");b.append(";center ").append(this.getCenterText());0!=f&&(b.append("; rotate z"),JV.TransformManager.truncate2(b,f));
0!=g&&(b.append("; rotate y"),JV.TransformManager.truncate2(b,g));0!=c&&(b.append("; rotate z"),JV.TransformManager.truncate2(b,c));b.append(";");this.addZoomTranslationNavigationText(b);return b.toString()},"~B");c$.truncate0=c(c$,"truncate0",function(a,b){a.appendC(" ");a.appendI(Math.round(b))},"JU.SB,~N");c$.truncate2=c(c$,"truncate2",function(a,b){a.appendC(" ");a.appendF(Math.round(100*b)/100)},"JU.SB,~N");c(c$,"setSpinXYZ",function(a,b,c){Float.isNaN(a)||(this.spinX=a);Float.isNaN(b)||(this.spinY=
b);Float.isNaN(c)||(this.spinZ=c);(this.isSpinInternal||this.isSpinFixed)&&this.clearSpin()},"~N,~N,~N");c(c$,"setSpinFps",function(a){0>=a?a=1:50<a&&(a=50);this.spinFps=a},"~N");c(c$,"setNavXYZ",function(a,b,c){Float.isNaN(a)||(this.navX=a);Float.isNaN(b)||(this.navY=b);Float.isNaN(c)||(this.navZ=c)},"~N,~N,~N");c(c$,"clearSpin",function(){this.setSpinOff();this.setNavOn(!1);this.isSpinFixed=this.isSpinInternal=!1});c(c$,"setSpinOn",function(){this.setSpin(null,!0,3.4028235E38,null,null,null,!1)});
c(c$,"setSpinOff",function(){this.setSpin(null,!1,3.4028235E38,null,null,null,!1)});c(c$,"setSpin",function(a,b,c,f,g,e,h){this.navOn&&b&&this.setNavOn(!1);this.spinOn!=b&&(this.spinOn=b,this.vwr.g.setB("_spinning",b),b?null==this.spinThread&&(this.spinThread=J.api.Interface.getOption("thread.SpinThread",this.vwr,"tm"),this.spinThread.setManager(this,this.vwr,[Float.$valueOf(c),f,g,e,h?Boolean.TRUE:null]),this.spinIsGesture=h,Float.isNaN(c)||3.4028235E38==c||!this.vwr.g.waitForMoveTo?this.spinThread.start():
(this.spinThread.setEval(a),this.spinThread.run())):null!=this.spinThread&&(this.spinThread.reset(),this.spinThread=null))},"J.api.JmolScriptEvaluator,~B,~N,JU.Lst,~A,JU.BS,~B");c(c$,"setNavOn",function(a){if(!Float.isNaN(this.navFps)){var b=this.navOn;a&&this.spinOn&&this.setSpin(null,!1,0,null,null,null,!1);this.navOn=a;this.vwr.g.setB("_navigating",a);a||this.navInterrupt();a?(0==this.navX&&(0==this.navY&&0==this.navZ)&&(this.navZ=1),0==this.navFps&&(this.navFps=10),null==this.spinThread&&(this.spinThread=
J.api.Interface.getOption("thread.SpinThread",this.vwr,"tm"),this.spinThread.setManager(this,this.vwr,null),this.spinThread.start())):b&&null!=this.spinThread&&(this.spinThread.interrupt(),this.spinThread=null)}},"~B");c(c$,"setVibrationScale",function(a){this.vibrationScale=a},"~N");c(c$,"setVibrationPeriod",function(a){if(Float.isNaN(a))a=this.vibrationPeriod;else if(0==a)this.vibrationPeriodMs=this.vibrationPeriod=0;else{this.vibrationPeriod=Math.abs(a);this.vibrationPeriodMs=z(1E3*this.vibrationPeriod);
if(0<a)return;a=-a}this.setVibrationOn(0<a&&0<=this.vwr.ms.getLastVibrationVector(this.vwr.am.cmi,0))},"~N");c(c$,"setVibrationT",function(a){this.vibrationT.x=a;0==this.vibrationScale&&(this.vibrationScale=this.vwr.g.vibrationScale)},"~N");c(c$,"isVibrationOn",function(){return this.vibrationOn});c(c$,"setVibrationOn",function(a){a?1>this.vwr.ms.mc?(this.vibrationOn=!1,this.vibrationT.x=0):(null==this.vibrationThread&&(this.vibrationThread=J.api.Interface.getOption("thread.VibrationThread",this.vwr,
"tm"),this.vibrationThread.setManager(this,this.vwr,null),this.vibrationThread.start()),this.vibrationOn=!0):(null!=this.vibrationThread&&(this.vibrationThread.interrupt(),this.vibrationThread=null),this.vibrationOn=!1,this.vibrationT.x=0)},"~B");c(c$,"clearVibration",function(){this.setVibrationOn(!1);this.vibrationScale=0});c(c$,"setStereoMode2",function(a){this.stereoMode=J.c.STER.CUSTOM;this.stereoColors=a},"~A");c(c$,"setStereoMode",function(a){this.stereoColors=null;this.stereoMode=a},"J.c.STER");
c(c$,"setStereoDegrees",function(a){this.stereoDegrees=a;this.stereoRadians=0.017453292*a},"~N");c(c$,"getStereoRotationMatrix",function(a){this.stereoFrame=a;if(!a)return this.matrixRotate;this.matrixTemp3.setAsYRotation(-this.stereoRadians);this.matrixStereo.mul2(this.matrixTemp3,this.matrixRotate);return this.matrixStereo},"~B");c(c$,"isWindowCentered",function(){return this.windowCentered});c(c$,"setWindowCentered",function(a){this.windowCentered=a;this.resetNavigationPoint(!0)},"~B");c(c$,"setRotationRadius",
function(a,b){a=this.modelRadius=0>=a?this.vwr.ms.calcRotationRadius(this.vwr.am.cmi,this.fixedRotationCenter):a;b&&this.vwr.setRotationRadius(a,!1);return a},"~N,~B");c(c$,"setRotationCenterAndRadiusXYZ",function(a,b){this.resetNavigationPoint(!1);null==a?(this.setFixedRotationCenter(this.rotationCenterDefault),this.modelRadius=this.rotationRadiusDefault):(this.setFixedRotationCenter(a),b&&this.windowCentered&&(this.modelRadius=this.vwr.ms.calcRotationRadius(this.vwr.am.cmi,this.fixedRotationCenter)))},
"JU.T3,~B");c(c$,"setNewRotationCenter",function(a,b){null==a&&(a=this.rotationCenterDefault);this.windowCentered?(this.translateToPercent("x",0),this.translateToPercent("y",0),this.setRotationCenterAndRadiusXYZ(a,!0),b&&this.resetFitToScreen(!0)):this.moveRotationCenter(a,!0)},"JU.P3,~B");c(c$,"moveRotationCenter",function(a,b){this.setRotationCenterAndRadiusXYZ(a,!1);b&&this.setRotationPointXY(this.fixedRotationCenter)},"JU.P3,~B");c(c$,"setCenter",function(){this.setRotationCenterAndRadiusXYZ(this.fixedRotationCenter,
!0)});c(c$,"setCenterAt",function(a,b){var c=JU.P3.newP(b);switch(a){case 96:c.add(this.vwr.ms.getAverageAtomPoint());break;case 1679429641:c.add(this.vwr.getBoundBoxCenter());break;case 1073741826:c.setT(this.rotationCenterDefault)}this.setRotationCenterAndRadiusXYZ(c,!0);this.resetFitToScreen(!0)},"~N,JU.P3");c(c$,"setFrameOffset",function(a){null==this.vwr.frameOffsets||0>a||a>=this.vwr.frameOffsets.length?this.frameOffset.set(0,0,0):this.frameOffset.setT(this.vwr.frameOffsets[a])},"~N");c(c$,
"setSelectedTranslation",function(a,b,c){this.bsSelectedAtoms=a;switch(b){case "X":case "x":this.ptOffset.x+=c;break;case "Y":case "y":this.ptOffset.y+=c;break;case "Z":case "z":this.ptOffset.z+=c}},"JU.BS,~S,~N");c(c$,"setNavFps",function(a){this.navFps=a},"~N");c(c$,"calcCameraFactors",function(){Float.isNaN(this.cameraDepth)&&(this.cameraDepth=this.cameraDepthSetting,this.zoomFactor=3.4028235E38);this.cameraDistance=this.cameraDepth*this.screenPixelCount;this.referencePlaneOffset=this.cameraDistance+
this.screenPixelCount/2;this.scalePixelsPerAngstrom=this.scale3D&&!this.perspectiveDepth&&1!=this.mode?72/this.scale3DAngstromsPerInch*(this.antialias?2:1):this.screenPixelCount/this.visualRangeAngstroms;1!=this.mode&&(this.mode=0==this.camera.z?0:2);this.perspectiveShiftXY.set(0==this.camera.z?0:100*(this.camera.x*this.scalePixelsPerAngstrom/this.screenWidth),0==this.camera.z?0:100*(this.camera.y*this.scalePixelsPerAngstrom/this.screenHeight),0);this.modelRadiusPixels=this.modelRadius*this.scalePixelsPerAngstrom;
var a=2*this.modelRadius/this.visualRangeAngstroms*this.referencePlaneOffset;if(1==this.mode)this.calcNavCameraFactors(a);else{this.zoomFactor=3.4028235E38;this.modelCenterOffset=this.referencePlaneOffset;if(!this.scale3D||this.perspectiveDepth)this.scalePixelsPerAngstrom*=this.modelCenterOffset/a*this.zmPct/100;this.modelRadiusPixels=this.modelRadius*this.scalePixelsPerAngstrom}});c(c$,"calcNavCameraFactors",function(a){3.4028235E38==this.zoomFactor?(1E4<this.zmPct&&(this.zmPct=1E4),this.modelCenterOffset=
100*a/this.zmPct):this.prevZoomSetting!=this.zmPctSet&&(this.modelCenterOffset=0==this.zoomRatio?100*a/this.zmPctSet:this.modelCenterOffset+(1-this.zoomRatio)*this.referencePlaneOffset,this.navMode=-1);this.prevZoomSetting=this.zmPctSet;this.zoomFactor=this.modelCenterOffset/this.referencePlaneOffset;this.zmPct=0==this.zoomFactor?1E4:100*(a/this.modelCenterOffset)},"~N");c(c$,"getPerspectiveFactor",function(a){return 0>=a?this.referencePlaneOffset:this.referencePlaneOffset/a},"~N");c(c$,"unTransformPoint",
function(a,b){this.untransformedPoint.setT(a);switch(this.mode){case 1:this.untransformedPoint.x-=this.navigationOffset.x;this.untransformedPoint.y-=this.navigationOffset.y;break;case 2:this.point3fScreenTemp.x+=this.perspectiveShiftXY.x,this.point3fScreenTemp.y+=this.perspectiveShiftXY.y;case 0:this.untransformedPoint.x-=this.fixedRotationOffset.x,this.untransformedPoint.y-=this.fixedRotationOffset.y}if(this.perspectiveDepth){var c=this.getPerspectiveFactor(this.untransformedPoint.z);this.untransformedPoint.x/=
c;this.untransformedPoint.y/=c}switch(this.mode){case 1:this.untransformedPoint.x+=this.navigationShiftXY.x;this.untransformedPoint.y+=this.navigationShiftXY.y;break;case 2:this.untransformedPoint.x-=this.perspectiveShiftXY.x,this.untransformedPoint.y-=this.perspectiveShiftXY.y}this.matrixTransformInv.rotTrans2(this.untransformedPoint,b)},"JU.T3,JU.T3");c(c$,"resetNavigationPoint",function(a){5>this.zmPct&&1!=this.mode?(this.perspectiveDepth=!0,this.mode=1):(1==this.mode?(this.navMode=1,this.slabPercentSetting=
0,this.perspectiveDepth=!0):a&&(this.slabPercentSetting=100),this.vwr.setFloatProperty("slabRange",0),a&&this.setSlabEnabled(1==this.mode),this.zoomFactor=3.4028235E38,this.zmPctSet=this.zmPct)},"~B");c(c$,"setNavigatePt",function(a){this.navigationCenter.setT(a);this.navMode=3;this.navigating=!0;this.finalizeTransformParameters();this.navigating=!1},"JU.P3");c(c$,"setNavigationSlabOffsetPercent",function(a){this.vwr.g.setF("navigationSlab",a);this.calcCameraFactors();this.navigationSlabOffset=a/
50*this.modelRadiusPixels},"~N");c(c$,"getNavigationOffset",function(){this.transformPt3f(this.navigationCenter,this.navigationOffset);return this.navigationOffset});c(c$,"getNavPtHeight",function(){return this.height/2});c(c$,"getNavigationOffsetPercent",function(a){this.getNavigationOffset();return 0==this.width||0==this.height?0:"X"==a?100*(this.navigationOffset.x-this.width/2)/this.width:100*(this.navigationOffset.y-this.getNavPtHeight())/this.height},"~S");c(c$,"getNavigationText",function(a){a=
a?" /* navigation center, translation, depth */ ":" ";if(1!=this.mode)return a+"{0 0 0} 0 0 0";this.getNavigationOffset();return a+JU.Escape.eP(this.navigationCenter)+" "+this.getNavigationOffsetPercent("X")+" "+this.getNavigationOffsetPercent("Y")+" "+this.navigationDepthPercent},"~B");c(c$,"setScreenParameters",function(a,b,c,f,g,e){var h=1==this.mode?JU.P3.newP(this.navigationCenter):null,j=JU.P3.newP(this.navigationOffset);j.x/=this.width;j.y/=this.height;this.setScreenParameters0(a,b,c,f,g,e);
null!=h&&(this.navigationCenter.setT(h),this.navTranslatePercentOrTo(-1,j.x*this.width,j.y*this.height),this.setNavigatePt(h))},"~N,~N,~B,~B,~B,~B");c(c$,"navInterrupt",function(){null!=this.nav&&this.nav.interrupt()});c(c$,"getNav",function(){if(null!=this.nav)return!0;this.nav=J.api.Interface.getOption("navigate.Navigator",this.vwr,"tm");if(null==this.nav)return!1;this.nav.set(this,this.vwr);return!0});c(c$,"navigateList",function(a,b){this.getNav()&&this.nav.navigateList(a,b)},"J.api.JmolScriptEvaluator,JU.Lst");
c(c$,"navigateAxis",function(a,b){this.getNav()&&this.nav.navigateAxis(a,b)},"JU.V3,~N");c(c$,"setNavigationOffsetRelative",function(){this.getNav()&&this.nav.setNavigationOffsetRelative()});c(c$,"navigateKey",function(a,b){this.getNav()&&this.nav.navigateKey(a,b)},"~N,~N");c(c$,"setNavigationDepthPercent",function(a){this.getNav()&&this.nav.setNavigationDepthPercent(a)},"~N");c(c$,"navTranslatePercentOrTo",function(a,b,c){this.getNav()&&this.nav.navTranslatePercentOrTo(a,b,c)},"~N,~N,~N");c(c$,"calcNavigationPoint",
function(){this.getNav()&&this.nav.calcNavigationPoint()});c(c$,"getNavigationState",function(){return 1==this.mode&&this.getNav()?this.nav.getNavigationState():""});C(c$,"DEFAULT_SPIN_Y",30,"DEFAULT_SPIN_FPS",30,"DEFAULT_NAV_FPS",10,"DEFAULT_VISUAL_RANGE",5,"DEFAULT_STEREO_DEGREES",-5,"MODE_STANDARD",0,"MODE_NAVIGATION",1,"MODE_PERSPECTIVE_PYMOL",2,"DEFAULT_PERSPECTIVE_MODEL",11,"DEFAULT_PERSPECTIVE_DEPTH",!0,"DEFAULT_CAMERA_DEPTH",3,"degreesPerRadian",57.29577951308232,"MAXIMUM_ZOOM_PERCENTAGE",
2E5,"MAXIMUM_ZOOM_PERSPECTIVE_DEPTH",1E4,"NAV_MODE_IGNORE",-2,"NAV_MODE_ZOOMED",-1,"NAV_MODE_NONE",0,"NAV_MODE_RESET",1,"NAV_MODE_NEWXY",2,"NAV_MODE_NEWXYZ",3,"NAV_MODE_NEWZ",4)}),u("JV"),v(["java.lang.Enum","javajs.api.PlatformViewer","J.api.JmolViewer","J.atomdata.AtomDataServer","java.util.Hashtable"],"JV.Viewer","java.io.Reader java.lang.Boolean $.Character $.Float $.NullPointerException javajs.awt.Dimension JU.BS $.CU $.DF $.Lst $.Measure $.P3 $.P3i $.PT $.Rdr $.SB $.V3 J.adapter.smarter.SmarterJmolAdapter J.api.Interface $.JmolAppConsoleInterface J.atomdata.RadiusData J.c.FIL $.STER $.VDW J.i18n.GT JM.ModelSet JS.SV $.T J.thread.TimeoutThread JU.BSUtil $.C $.CommandHistory $.Elements $.Escape $.GData $.JmolMolecule $.Logger $.Parser $.TempArray JV.ActionManager $.AnimationManager $.ColorManager $.FileManager $.GlobalSettings $.JC $.ModelManager $.SelectionManager $.ShapeManager $.StateManager $.StatusManager $.TransformManager JV.binding.Binding".split(" "),
function(){c$=s(function(){this.queueOnHold=this.isSingleThreaded=this.isWebGL=this.isJS=this.haveDisplay=this.autoExit=this.testAsync=!1;this.fullName="";this.fm=this.ms=this.definedAtomSets=this.compiler=null;this.mustRender=this.listCommands=this.isSyntaxCheck=this.isSyntaxAndFileCheck=this.isJNLP=this.isApplet=!1;this.appletName=this.htmlName="";this.tryPt=0;this.insertedCommand="";this.tm=this.sm=this.g=this.rm=this.slm=this.shm=this.dm=this.cm=this.am=this.acm=this.html5Applet=this.gdata=null;
this.logFilePath=this.syncId="";this.useCommandThread=this.noGraphicsAllowed=this.multiTouch=this.isSilent=this.isSignedAppletLocal=this.isSignedApplet=this.isPrintOnly=this.allowScripting=!1;this.tempArray=this.eval=this.scm=this.stm=this.mm=this.commandHistory=this.access=this.modelAdapter=this.display=this.vwrOptions=this.commandOptions=null;this.async=this.allowArrayDotNotation=!1;this.errorMessageUntranslated=this.errorMessage=this.chainList=this.chainMap=this.rd=this.defaultVdw=this.actionStatesRedo=
this.actionStates=this.dimScreen=null;this.privateKey=0;this.headless=this.isPreviewOnly=this.dataOnly=!1;this.frameOffsets=this.bsFrameOffsets=this.lastData=this.jsc=this.smilesMatcher=this.minimizer=this.annotationParser=this.ligandModelSet=this.ligandModels=this.mouse=null;this.motionEventNumber=0;this.inMotion=!1;this.refreshing=!0;this.axesAreTainted=!1;this.maximumSize=2147483647;this.imageFontScaling=1;this.gRight=null;this.isStereoSlave=!1;this.jsParams=this.captureParams=null;this.antialiased=
!1;this.hoverAtomIndex=-1;this.hoverText=null;this.hoverEnabled=!0;this.currentCursor=0;this.ptTemp=null;this.prevFrame=-2147483648;this.prevMorphModel=0;this.haveJDX=!1;this.jsv=null;this.frankOn=!0;this.scriptEditorVisible=!1;this.pm=this.headlessImageParams=this.modelkitPopup=this.jmolpopup=this.scriptEditor=this.appConsole=null;this.isTainted=!0;this.showSelected=this.movingSelected=!1;this.rotatePrev2=this.rotatePrev1=this.rotateBondIndex=-1;this.bsRotateBranch=null;this.creatingImage=!1;this.userVdwMars=
this.userVdws=this.bsUserVdws=this.outputManager=null;this.currentShapeID=-1;this.localFunctions=this.currentShapeState=null;this.$isKiosk=!1;this.executor=null;this.displayLoadErrors=!0;this.$isParallel=!1;this.stateScriptVersionInt=0;this.jbr=this.jzt=this.logFileName=this.nmrCalculation=this.timeouts=this.jsExporter3D=null;p(this,arguments)},JV,"Viewer",J.api.JmolViewer,[J.atomdata.AtomDataServer,javajs.api.PlatformViewer]);c(c$,"finalize",function(){JU.Logger.debugging&&JU.Logger.debug("vwr finalize "+
this);V(this,JV.Viewer,"finalize",[])});c(c$,"setInsertedCommand",function(a){this.insertedCommand=a},"~S");c$.getJmolVersion=j(c$,"getJmolVersion",function(){return null==JV.Viewer.version_date?JV.Viewer.version_date=JV.JC.version+"  "+JV.JC.date:JV.Viewer.version_date});c$.allocateViewer=c(c$,"allocateViewer",function(a,b,c,f,g,e,h,j){var k=new java.util.Hashtable;k.put("display",a);k.put("adapter",b);k.put("statusListener",h);k.put("platform",j);k.put("options",e);k.put("fullName",c);k.put("documentBase",
f);k.put("codeBase",g);return new JV.Viewer(k)},"~O,J.api.JmolAdapter,~S,java.net.URL,java.net.URL,~S,J.api.JmolStatusListener,javajs.api.GenericPlatform");t(c$,function(a){K(this,JV.Viewer,[]);this.commandHistory=new JU.CommandHistory;this.dimScreen=new javajs.awt.Dimension(0,0);this.rd=new J.atomdata.RadiusData(null,0,null,null);this.defaultVdw=J.c.VDW.JMOL;this.localFunctions=new java.util.Hashtable;this.privateKey=Math.random();this.actionStates=new JU.Lst;this.actionStatesRedo=new JU.Lst;this.chainMap=
new java.util.Hashtable;this.chainList=new JU.Lst;this.setOptions(a)},"java.util.Map");c(c$,"haveAccess",function(a){return this.access===a},"JV.Viewer.ACCESS");j(c$,"getModelAdapter",function(){return null==this.modelAdapter?this.modelAdapter=new J.adapter.smarter.SmarterJmolAdapter:this.modelAdapter});j(c$,"getSmartsMatch",function(a,b){null==b&&(b=this.bsA());return this.getSmilesMatcher().getSubstructureSet(a,this.ms.at,this.ms.ac,b,!0,!1)},"~S,JU.BS");c(c$,"setOptions",function(a){this.vwrOptions=
a;JU.Logger.debugging&&JU.Logger.debug("Viewer constructor "+this);this.modelAdapter=a.get("adapter");var b=a.get("statusListener");this.fullName=a.get("fullName");null==this.fullName&&(this.fullName="");var c=a.get("codePath");null==c&&(c="../java/");JV.Viewer.appletCodeBase=c.toString();JV.Viewer.appletIdiomaBase=JV.Viewer.appletCodeBase.substring(0,JV.Viewer.appletCodeBase.lastIndexOf("/",JV.Viewer.appletCodeBase.length-2)+1)+"idioma";c=a.get("documentBase");JV.Viewer.appletDocumentBase=null==
c?"":c.toString();c=a.get("options");this.commandOptions=null==c?"":c.toString();(a.containsKey("debug")||0<=this.commandOptions.indexOf("-debug"))&&JU.Logger.setLogLevel(5);this.isApplet&&a.containsKey("maximumSize")&&this.setMaximumSize(a.get("maximumSize").intValue());(this.isJNLP=this.checkOption2("isJNLP","-jnlp"))&&JU.Logger.info("setting JNLP mode TRUE");this.isApplet=(this.isSignedApplet=this.isJNLP||this.checkOption2("signedApplet","-signed"))||this.checkOption2("applet","-applet");this.allowScripting=
!this.checkOption2("noscripting","-noscripting");var f=this.fullName.indexOf("__");this.htmlName=0>f?this.fullName:this.fullName.substring(0,f);this.appletName=JU.PT.split(this.htmlName+"_","_")[0];this.syncId=0>f?"":this.fullName.substring(f+2,this.fullName.length-2);this.access=this.checkOption2("access:READSPT","-r")?JV.Viewer.ACCESS.READSPT:this.checkOption2("access:NONE","-R")?JV.Viewer.ACCESS.NONE:JV.Viewer.ACCESS.ALL;(this.isPreviewOnly=a.containsKey("previewOnly"))&&a.remove("previewOnly");
this.isPrintOnly=this.checkOption2("printOnly","-p");this.dataOnly=this.checkOption2("isDataOnly","\x00");this.autoExit=this.checkOption2("exit","-x");c=a.get("platform");f="unknown";null==c&&(c=this.commandOptions.contains("platform=")?this.commandOptions.substring(this.commandOptions.indexOf("platform=")+9):"J.awt.Platform");if(q(c,String)){f=c;this.isJS=(this.isWebGL=0<=f.indexOf(".awtjs."))||0<=f.indexOf(".awtjs2d.");this.async=!this.dataOnly&&!this.autoExit&&(this.testAsync||this.isJS&&a.containsKey("async"));
var c=null,g="?";self.Jmol&&(c=Jmol._applets[this.htmlName.split("_object")[0]],g=Jmol._version);null!=g&&(this.html5Applet=c,JV.Viewer.strJavaVersion=g,JV.Viewer.strJavaVendor="Java2Script "+(this.isWebGL?"(WebGL)":"(HTML5)"));c=J.api.Interface.getInterface(f,this,"setOptions")}this.apiPlatform=c;this.display=a.get("display");this.isSingleThreaded=this.apiPlatform.isSingleThreaded();this.noGraphicsAllowed=this.checkOption2("noGraphics","-n");this.haveDisplay=this.isWebGL||null!=this.display&&!this.noGraphicsAllowed&&
!this.headless&&!this.dataOnly;this.headless=(this.noGraphicsAllowed=(new Boolean(this.noGraphicsAllowed&null==this.display)).valueOf())||this.apiPlatform.isHeadless();this.haveDisplay?(this.mustRender=!0,this.multiTouch=this.checkOption2("multiTouch","-multitouch"),this.isWebGL||(this.display=document.getElementById(this.display))):this.display=null;this.apiPlatform.setViewer(this,this.display);c=a.get("graphicsAdapter");null==c&&!this.isWebGL&&(c=J.api.Interface.getOption("g3d.Graphics3D",this,
"setOptions"));this.gdata=null==c&&(this.isWebGL||!this.isJS)?new JU.GData:c;this.gdata.initialize(this,this.apiPlatform);this.stm=new JV.StateManager(this);this.cm=new JV.ColorManager(this,this.gdata);this.sm=new JV.StatusManager(this);f=a.containsKey("4DMouse");this.tm=JV.TransformManager.getTransformManager(this,2147483647,0,f);this.slm=new JV.SelectionManager(this);this.haveDisplay&&(this.acm=this.multiTouch?J.api.Interface.getOption("multitouch.ActionManagerMT",null,null):new JV.ActionManager,
this.acm.setViewer(this,this.commandOptions+"-multitouch-"+a.get("multiTouch")),this.mouse=this.apiPlatform.getMouseManager(this.privateKey,this.display),this.multiTouch&&!this.checkOption2("-simulated","-simulated")&&this.apiPlatform.setTransparentCursor(this.display));this.mm=new JV.ModelManager(this);this.shm=new JV.ShapeManager(this);this.tempArray=new JU.TempArray;this.am=new JV.AnimationManager(this);c=a.get("repaintManager");null==c&&(c=J.api.Interface.getOption("render.RepaintManager",this,
"setOptions"));if(this.isJS||null!=c&&!c.equals(""))(this.rm=c).set(this,this.shm);this.ms=new JM.ModelSet(this,null);this.initialize(!0);this.fm=new JV.FileManager(this);this.definedAtomSets=new java.util.Hashtable;this.setJmolStatusListener(b);this.isApplet?(JU.Logger.info("vwrOptions: \n"+JU.Escape.escapeMap(this.vwrOptions)),b=this.vwrOptions.get("documentLocation"),!this.isJS&&(null!=b&&b.startsWith("file:/"))&&(b=b.substring(0,b.substring(0,(b+"?").indexOf("?")).lastIndexOf("/")),JU.Logger.info("setting current directory to "+
b),this.cd(b)),b=JV.Viewer.appletDocumentBase,f=b.indexOf("#"),0<=f&&(b=b.substring(0,f)),f=b.lastIndexOf("?"),0<=f&&(b=b.substring(0,f)),f=b.lastIndexOf("/"),0<=f&&(b=b.substring(0,f)),JV.Viewer.jsDocumentBase=b,this.fm.setAppletContext(JV.Viewer.appletDocumentBase),a=a.get("appletProxy"),null!=a&&this.setStringProperty("appletProxy",a),this.isSignedApplet?(this.logFilePath=JU.PT.rep(JV.Viewer.appletCodeBase,"file://",""),this.logFilePath=JU.PT.rep(this.logFilePath,"file:/",""),0<=this.logFilePath.indexOf("//")?
this.logFilePath=null:this.isSignedAppletLocal=!0):this.isJS||(this.logFilePath=null)):(this.gdata.setBackgroundTransparent(this.checkOption2("backgroundTransparent","-b")),(this.isSilent=this.checkOption2("silent","-i"))&&JU.Logger.setLogLevel(3),this.headless&&!this.isSilent&&JU.Logger.info("Operating headless display="+this.display+" nographicsallowed="+this.noGraphicsAllowed),this.isSyntaxCheck=(this.isSyntaxAndFileCheck=this.checkOption2("checkLoad","-C"))||this.checkOption2("check","-c"),this.listCommands=
this.checkOption2("listCommands","-l"),this.cd("."),this.headless&&(this.headlessImageParams=a.get("headlessImage"),c=a.get("headlistMaxTimeMs"),null==c&&(c=Integer.$valueOf(6E4)),this.setTimeout(""+Math.random(),c.intValue(),"exitJmol")));this.useCommandThread=!this.headless&&this.checkOption2("useCommandThread","-threaded");this.setStartupBooleans();this.setIntProperty("_nProcessors",JV.Viewer.nProcessors);this.isSilent||JU.Logger.info("(C) 2012 Jmol Development\nJmol Version: "+JV.Viewer.getJmolVersion()+
"\njava.vendor: "+JV.Viewer.strJavaVendor+"\njava.version: "+JV.Viewer.strJavaVersion+"\nos.name: "+JV.Viewer.strOSName+"\nAccess: "+this.access+"\nmemory: "+this.getP("_memory")+"\nprocessors available: "+JV.Viewer.nProcessors+"\nuseCommandThread: "+this.useCommandThread+(!this.isApplet?"":"\nappletId:"+this.htmlName+(this.isSignedApplet?" (signed)":"")));this.allowScripting&&this.getScriptManager();this.zap(!1,!0,!1);this.g.setO("language",J.i18n.GT.getLanguage());this.stm.setJmolDefaults();JU.Elements.covalentVersion=
1;this.allowArrayDotNotation=!0},"java.util.Map");c(c$,"setDisplay",function(a){this.display=a;this.apiPlatform.setViewer(this,a)},"~O");c(c$,"newMeasurementData",function(a,b){return J.api.Interface.getInterface("JM.MeasurementData",this,"script").init(a,this,b)},"~S,JU.Lst");c(c$,"getDataManager",function(){return null==this.dm?this.dm=J.api.Interface.getInterface("JV.DataManager",this,"script").set(this):this.dm});c(c$,"getScriptManager",function(){if(this.allowScripting&&null==this.scm){this.scm=
J.api.Interface.getInterface("JS.ScriptManager",this,"setOptions");if(this.isJS&&null==this.scm)throw new NullPointerException;if(null==this.scm)return this.allowScripting=!1,null;this.eval=this.scm.setViewer(this);this.useCommandThread&&this.scm.startCommandWatcher(!0)}return this.scm});c(c$,"checkOption2",function(a,b){return this.vwrOptions.containsKey(a)||0<=this.commandOptions.indexOf(b)},"~S,~S");c(c$,"setStartupBooleans",function(){this.setBooleanProperty("_applet",this.isApplet);this.setBooleanProperty("_jspecview",
!1);this.setBooleanProperty("_signedApplet",this.isSignedApplet);this.setBooleanProperty("_headless",this.headless);this.setStringProperty("_restrict",'"'+this.access+'"');this.setBooleanProperty("_useCommandThread",this.useCommandThread)});c(c$,"getExportDriverList",function(){return this.haveAccess(JV.Viewer.ACCESS.ALL)?this.g.getParameter("exportDrivers",!0):""});j(c$,"dispose",function(){this.gRight=null;null!=this.mouse&&(this.acm.dispose(),this.mouse.dispose(),this.mouse=null);this.clearScriptQueue();
this.clearThreads();this.haltScriptExecution();null!=this.scm&&this.scm.clear(!0);this.gdata.destroy();null!=this.jmolpopup&&this.jmolpopup.jpiDispose();null!=this.modelkitPopup&&this.modelkitPopup.jpiDispose();try{null!=this.appConsole&&(this.appConsole.dispose(),this.appConsole=null),null!=this.scriptEditor&&(this.scriptEditor.dispose(),this.scriptEditor=null)}catch(a){if(!B(a,Exception))throw a;}});c(c$,"reset",function(a){this.ms.calcBoundBoxDimensions(null,1);this.axesAreTainted=!0;this.tm.homePosition(a);
this.ms.setCrystallographicDefaults()?this.stm.setCrystallographicDefaults():this.setAxesMode(603979810);this.prevFrame=-2147483648;this.tm.spinOn||this.setSync()},"~B");j(c$,"homePosition",function(){this.evalString("reset spin")});c(c$,"initialize",function(a){this.g=new JV.GlobalSettings(this,this.g,a);this.setStartupBooleans();this.g.setI("_width",this.dimScreen.width);this.g.setI("_height",this.dimScreen.height);this.haveDisplay&&(this.g.setB("_is2D",this.isJS&&!this.isWebGL),this.g.setB("_multiTouchClient",
this.acm.isMTClient()),this.g.setB("_multiTouchServer",this.acm.isMTServer()));this.cm.setDefaultColors(!1);this.setObjectColor("background","black");this.setObjectColor("axis1","red");this.setObjectColor("axis2","green");this.setObjectColor("axis3","blue");this.am.setAnimationOn(!1);this.am.setAnimationFps(this.g.animationFps);this.sm.allowStatusReporting=this.g.statusReporting;this.setBooleanProperty("antialiasDisplay",this.g.antialiasDisplay);this.stm.resetLighting();this.tm.setDefaultPerspective()},
"~B");c(c$,"saveModelOrientation",function(){this.ms.saveModelOrientation(this.am.cmi,this.stm.getOrientation())});c(c$,"restoreModelOrientation",function(a){a=this.ms.getModelOrientation(a);null!=a&&a.restore(-1,!0)},"~N");c(c$,"restoreModelRotation",function(a){a=this.ms.getModelOrientation(a);null!=a&&a.restore(-1,!1)},"~N");c(c$,"getGLmolView",function(){var a=this.tm;return{center:a.fixedRotationCenter,quaternion:a.getRotationQuaternion(),xtrans:a.xTranslationFraction,ytrans:a.yTranslationFraction,
scale:a.scalePixelsPerAngstrom,zoom:a.zoomPercent,cameraDistance:a.cameraDistance,pixelCount:a.screenPixelCount,perspective:a.perspectiveDepth,width:a.width,height:a.height}});c(c$,"setRotationRadius",function(a,b){b&&(a=this.tm.setRotationRadius(a,!1));this.ms.setRotationRadius(this.am.cmi,a)&&this.g.setF("rotationRadius",a)},"~N,~B");c(c$,"setCenterBitSet",function(a,b){this.isJmolDataFrame()||this.tm.setNewRotationCenter(0<JU.BSUtil.cardinalityOf(a)?this.ms.getAtomSetCenter(a):null,b)},"JU.BS,~B");
c(c$,"setNewRotationCenter",function(a){this.isJmolDataFrame()||this.tm.setNewRotationCenter(a,!0)},"JU.P3");c(c$,"navigate",function(a,b){this.isJmolDataFrame()||(this.tm.navigateKey(a,b),!this.tm.vibrationOn&&0!=a&&this.refresh(1,"Viewer:navigate()"))},"~N,~N");c(c$,"move",function(a,b,c,f,g,e,h){this.tm.move(a,b,c,f,g,e,h);this.moveUpdate(e)},"J.api.JmolScriptEvaluator,JU.V3,~N,JU.V3,~N,~N,~N");c(c$,"moveTo",function(a,b,c,f,g,e,h,j,k,n,m,p,q,s,t,u,v){this.haveDisplay||(b=0);this.setTainted(!0);
this.tm.moveTo(a,b,c,f,g,e,h,j,k,n,m,p,q,s,t,u,v)},"J.api.JmolScriptEvaluator,~N,JU.P3,JU.V3,~N,JU.M3,~N,~N,~N,~N,JU.P3,~N,~N,~N,~N,~N,~N");c(c$,"moveUpdate",function(a){0<a?this.requestRepaintAndWait("moveUpdate"):0==a&&this.setSync()},"~N");c(c$,"navigatePt",function(a){this.tm.setNavigatePt(a);this.setSync()},"JU.P3");c(c$,"navigateAxis",function(a,b){this.tm.navigateAxis(a,b);this.setSync()},"JU.V3,~N");c(c$,"navTranslatePercent",function(a,b){this.isJmolDataFrame()||(this.tm.navTranslatePercentOrTo(0,
a,b),this.setSync())},"~N,~N");c(c$,"zoomBy",function(a){this.tm.zoomBy(a);this.refresh(2,this.sm.syncingMouse?"Mouse: zoomBy "+a:"")},"~N");c(c$,"zoomByFactor",function(a,b,c){this.tm.zoomByFactor(a,b,c);this.refresh(2,!this.sm.syncingMouse?"":"Mouse: zoomByFactor "+a+(2147483647==b?"":" "+b+" "+c))},"~N,~N,~N");c(c$,"rotateXYBy",function(a,b){this.tm.rotateXYBy(a,b,null);this.refresh(2,this.sm.syncingMouse?"Mouse: rotateXYBy "+a+" "+b:"")},"~N,~N");c(c$,"spinXYBy",function(a,b,c){this.tm.spinXYBy(a,
b,c);0==a&&0==b||this.refresh(2,this.sm.syncingMouse?"Mouse: spinXYBy "+a+" "+b+" "+c:"")},"~N,~N,~N");c(c$,"rotateZBy",function(a,b,c){this.tm.rotateZBy(a,b,c);this.refresh(2,this.sm.syncingMouse?"Mouse: rotateZBy "+a+(2147483647==b?"":" "+b+" "+c):"")},"~N,~N,~N");c(c$,"rotateSelected",function(a,b,c){this.isJmolDataFrame()||(this.tm.rotateXYBy(a,b,this.setMovableBitSet(c,!1)),this.refreshMeasures(!0),this.refresh(2,this.sm.syncingMouse?"Mouse: rotateMolecule "+a+" "+b:""))},"~N,~N,JU.BS");c(c$,
"setMovableBitSet",function(a,b){null==a&&(a=this.bsA());a=JU.BSUtil.copy(a);JU.BSUtil.andNot(a,this.getMotionFixedAtoms());b&&!this.g.allowMoveAtoms&&(a=this.ms.getMoleculeBitSet(a));return a},"JU.BS,~B");c(c$,"translateXYBy",function(a,b){this.tm.translateXYBy(a,b);this.refresh(2,this.sm.syncingMouse?"Mouse: translateXYBy "+a+" "+b:"")},"~N,~N");j(c$,"rotateFront",function(){this.tm.resetRotation();this.refresh(1,"Viewer:rotateFront()")});c(c$,"translate",function(a,b,c,f){var g="\x00"==c?z(b):
"%"==c?this.tm.percentToPixels(a,b):this.tm.angstromsToPixels(b*("n"==c?10:1));if(null!=f){if(0==g)return;this.tm.setSelectedTranslation(f,a,g)}else switch(a){case "X":case "x":"\x00"==c?this.tm.translateToPercent("x",b):this.tm.translateXYBy(g,0);break;case "Y":case "y":"\x00"==c?this.tm.translateToPercent("y",b):this.tm.translateXYBy(0,g);break;case "Z":case "z":"\x00"==c?this.tm.translateToPercent("z",b):this.tm.translateZBy(g)}this.refresh(1,"Viewer:translate()")},"~S,~N,~S,JU.BS");c(c$,"slabByPixels",
function(a){this.tm.slabByPercentagePoints(a);this.refresh(3,"slabByPixels")},"~N");c(c$,"depthByPixels",function(a){this.tm.depthByPercentagePoints(a);this.refresh(3,"depthByPixels")},"~N");c(c$,"slabDepthByPixels",function(a){this.tm.slabDepthByPercentagePoints(a);this.refresh(3,"slabDepthByPixels")},"~N");c(c$,"finalizeTransformParameters",function(){this.tm.finalizeTransformParameters();this.gdata.setSlab(this.tm.slabValue);this.gdata.setDepth(this.tm.depthValue);this.gdata.setZShade(this.tm.zShadeEnabled,
this.tm.zSlabValue,this.tm.zDepthValue,this.g.zShadePower)});c(c$,"getScalePixelsPerAngstrom",function(a){return this.tm.scalePixelsPerAngstrom*(a||!this.antialiased?1:0.5)},"~B");c(c$,"setSpin",function(a,b){if(JU.PT.isOneOf(a,";x;y;z;fps;X;Y;Z;FPS;")){var c="x;y;z;fps;X;Y;Z;FPS".indexOf(a);switch(c){case 0:this.tm.setSpinXYZ(b,NaN,NaN);break;case 2:this.tm.setSpinXYZ(NaN,b,NaN);break;case 4:this.tm.setSpinXYZ(NaN,NaN,b);break;default:this.tm.setSpinFps(b);break;case 10:this.tm.setNavXYZ(b,NaN,NaN);
break;case 12:this.tm.setNavXYZ(NaN,b,NaN);break;case 14:this.tm.setNavXYZ(NaN,NaN,b);break;case 16:this.tm.setNavFps(b)}this.g.setI((10>c?"spin":"nav")+a,b)}},"~S,~N");c(c$,"getSpinState",function(){return this.getStateCreator().getSpinState(!1)});c(c$,"getOrientationText",function(a,b){switch(a){case 1313866249:case 1073741863:case 1112541205:case 1112541206:case 1112541207:case 135270418:return this.ms.getBoundBoxOrientation(a,this.bsA());case 1073742035:return this.stm.getSavedOrientationText(b);
default:return this.tm.getOrientationText(a)}},"~N,~S");c(c$,"getCurrentColorRange",function(){return this.cm.getPropertyColorRange()});c(c$,"setDefaultColors",function(a){this.cm.setDefaultColors(a);this.g.setB("colorRasmol",a);this.g.setO("defaultColorScheme",a?"rasmol":"jmol")},"~B");c(c$,"setElementArgb",function(a,b){this.g.setO("=color "+JU.Elements.elementNameFromNumber(a),JU.Escape.escapeColor(b));this.cm.setElementArgb(a,b)},"~N,~N");j(c$,"setVectorScale",function(a){this.g.setF("vectorScale",
a);this.g.vectorScale=a},"~N");j(c$,"setVibrationScale",function(a){this.tm.setVibrationScale(a);this.g.vibrationScale=a;this.g.setF("vibrationScale",a)},"~N");j(c$,"setVibrationPeriod",function(a){this.tm.setVibrationPeriod(a);a=Math.abs(a);this.g.vibrationPeriod=a;this.g.setF("vibrationPeriod",a)},"~N");c(c$,"setObjectColor",function(a,b){null==b||0==b.length||this.setObjectArgb(a,JU.CU.getArgbFromString(b))},"~S,~S");c(c$,"setObjectVisibility",function(a,b){var c=JV.StateManager.getObjectIdFromName(a);
0<=c&&this.setShapeProperty(c,"display",b?Boolean.TRUE:Boolean.FALSE)},"~S,~B");c(c$,"setObjectArgb",function(a,b){var c=JV.StateManager.getObjectIdFromName(a);if(0>c)a.equalsIgnoreCase("axes")&&(this.setObjectArgb("axis1",b),this.setObjectArgb("axis2",b),this.setObjectArgb("axis3",b));else{this.g.objColors[c]=b;switch(c){case 0:this.gdata.setBackgroundArgb(b),this.cm.setColixBackgroundContrast(b)}this.g.setO(a+"Color",JU.Escape.escapeColor(b))}},"~S,~N");c(c$,"setBackgroundImage",function(a,b){this.g.backgroundImageFileName=
a;this.gdata.setBackgroundImage(b)},"~S,~O");c(c$,"getObjectColix",function(a){a=this.g.objColors[a];return 0==a?this.cm.colixBackgroundContrast:JU.C.getColix(a)},"~N");c(c$,"getFontState",function(a,b){return this.getStateCreator().getFontState(a,b)},"~S,javajs.awt.Font");j(c$,"setColorBackground",function(a){this.setObjectColor("background",a)},"~S");j(c$,"getBackgroundArgb",function(){return this.g.objColors[0]});c(c$,"setObjectMad",function(a,b,c){var f=JV.StateManager.getObjectIdFromName(b.equalsIgnoreCase("axes")?
"axis":b);if(!(0>f)){if(-2==c||-4==c){var g=c+3;c=this.getObjectMad(f);0==c&&(c=g)}this.g.setB("show"+b,0!=c);this.g.objStateOn[f]=0!=c;0!=c&&(this.g.objMad[f]=c,this.setShapeSize(a,c,null))}},"~N,~S,~N");c(c$,"getObjectMad",function(a){return this.g.objStateOn[a]?this.g.objMad[a]:0},"~N");c(c$,"setPropertyColorScheme",function(a,b,c){this.g.propertyColorScheme=a;a.startsWith("translucent ")&&(b=!0,a=a.substring(12).trim());this.cm.setPropertyColorScheme(a,b,c)},"~S,~B,~B");c(c$,"getLightingState",
function(){return this.getStateCreator().getLightingState(!0)});c(c$,"getColorPointForPropertyValue",function(a){return JU.CU.colorPtFromInt(this.gdata.getColorArgbOrGray(this.cm.ce.getColorIndex(a)),null)},"~N");c(c$,"select",function(a,b,c,f){b&&(a=this.getUndeletedGroupAtomBits(a));this.slm.select(a,c,f);this.shm.setShapeSizeBs(1,2147483647,null,null)},"JU.BS,~B,~N,~B");j(c$,"setSelectionSet",function(a){this.select(a,!1,0,!0)},"JU.BS");c(c$,"selectBonds",function(a){this.shm.setShapeSizeBs(1,
2147483647,null,a)},"JU.BS");c(c$,"displayAtoms",function(a,b,c,f,g){c&&(a=this.getUndeletedGroupAtomBits(a));b?this.slm.display(this.ms,a,f,g):this.slm.hide(this.ms,a,f,g)},"JU.BS,~B,~B,~N,~B");c(c$,"getUndeletedGroupAtomBits",function(a){a=this.ms.getAtoms(1087373318,a);JU.BSUtil.andNot(a,this.slm.bsDeleted);return a},"JU.BS");c(c$,"reportSelection",function(a){this.ms.getSelectionHaloEnabled()&&this.setTainted(!0);(this.isScriptQueued()||this.g.debugScript)&&this.scriptStatus(a)},"~S");c(c$,"clearAtomSets",
function(){this.slm.setSelectionSubset(null);this.definedAtomSets.clear()});c(c$,"getDefinedAtomSet",function(a){a=this.definedAtomSets.get(a.toLowerCase());return q(a,JU.BS)?a:new JU.BS},"~S");j(c$,"selectAll",function(){this.slm.selectAll(!1)});j(c$,"clearSelection",function(){this.slm.clearSelection(!0);this.g.setB("hideNotSelected",!1)});c(c$,"bsA",function(){return this.slm.getSelectedAtoms()});j(c$,"addSelectionListener",function(a){this.slm.addListener(a)},"J.api.JmolSelectionListener");j(c$,
"removeSelectionListener",function(a){this.slm.addListener(a)},"J.api.JmolSelectionListener");c(c$,"getAtomBitSetEval",function(a,b){return this.allowScripting?this.getScriptManager().getAtomBitSetEval(a,b):new JU.BS},"J.api.JmolScriptEvaluator,~O");c(c$,"processTwoPointGesture",function(a){this.mouse.processTwoPointGesture(a)},"~A");c(c$,"processMouseEvent",function(a,b,c,f,g){return this.mouse.processEvent(a,b,c,f,g)},"~N,~N,~N,~N,~N");c(c$,"getRubberBandSelection",function(){return this.haveDisplay?
this.acm.getRubberBand():null});c(c$,"isBound",function(a,b){return this.haveDisplay&&this.acm.bnd(a,b)},"~N,~N");c(c$,"getCursorX",function(){return this.haveDisplay?this.acm.getCurrentX():0});c(c$,"getCursorY",function(){return this.haveDisplay?this.acm.getCurrentY():0});c(c$,"getDefaultDirectory",function(){return this.g.defaultDirectory});c(c$,"getLocalUrl",function(a){return this.apiPlatform.getLocalUrl(a)},"~S");j(c$,"getBufferedInputStream",function(a){return this.fm.getBufferedInputStream(a)},
"~S");c(c$,"setLoadParameters",function(a,b){null==a&&(a=new java.util.Hashtable);a.put("vwr",this);0<this.g.atomTypes.length&&a.put("atomTypes",this.g.atomTypes);a.containsKey("lattice")||a.put("lattice",this.g.ptDefaultLattice);this.g.applySymmetryToBonds&&a.put("applySymmetryToBonds",Boolean.TRUE);this.g.pdbGetHeader&&a.put("getHeader",Boolean.TRUE);this.g.pdbSequential&&a.put("isSequential",Boolean.TRUE);this.g.legacyJavaFloat&&a.put("legacyJavaFloat",Boolean.TRUE);a.put("stateScriptVersionInt",
Integer.$valueOf(this.stateScriptVersionInt));if(!a.containsKey("filter")){var c=this.g.defaultLoadFilter;0<c.length&&a.put("filter",c)}c=b&&!this.g.appendNew&&0<this.ms.ac;a.put("baseAtomIndex",Integer.$valueOf(b?this.ms.ac:0));a.put("baseModelIndex",Integer.$valueOf(0==this.ms.ac?0:this.ms.mc+(c?-1:0)));c&&a.put("merging",Boolean.TRUE);return a},"java.util.Map,~B");j(c$,"openFileAsyncSpecial",function(a,b){this.getScriptManager().openFileAsync(a,b)},"~S,~N");j(c$,"openFile",function(a){this.zap(!0,
!0,!1);return this.loadModelFromFileRepaint(null,a,null,null)},"~S");j(c$,"openFiles",function(a){this.zap(!0,!0,!1);return this.loadModelFromFileRepaint(null,null,a,null)},"~A");j(c$,"openReader",function(a,b,c){this.zap(!0,!0,!1);return this.loadModelFromFileRepaint(a,b,null,c)},"~S,~S,java.io.Reader");j(c$,"openDOM",function(a){this.zap(!0,!0,!1);return this.loadModelFromFileRepaint("?","?",null,a)},"~O");c(c$,"loadModelFromFileRepaint",function(a,b,c,f){a=this.loadModelFromFile(a,b,c,f,!1,null,
null,null,0,!1);this.refresh(1,"loadModelFromFileRepaint");return a},"~S,~S,~A,~O");c(c$,"loadModelFromFile",function(a,b,c,f,g,e,h,j,k,n){null==e&&(e=this.setLoadParameters(null,g));n&&e.put("concatenate",Boolean.TRUE);var m=this.fm.getFileInfo();if(null!=c){if(null==h){h=(new JU.SB).append("load files");for(a=0;a<c.length;a++)h.append(0==a||!n?" ":"+").append("/*file*/$FILENAME"+(a+1)+"$")}0<j.length()&&h.append(" /*options*/ ").append(j.toString());a=System.currentTimeMillis();j=this.fm.createAtomSetCollectionFromFiles(c,
this.setLoadParameters(e,g),g);a=System.currentTimeMillis()-a;JU.Logger.info("openFiles("+c.length+") "+a+" ms");c=e.get("fullPathNames");n=e.get("fileTypes");h=h.toString();for(a=0;a<c.length;a++)b=c[a],null!=n&&null!=n[a]&&(b=n[a]+"::"+b),h=JU.PT.rep(h,"$FILENAME"+(a+1)+"$",JU.PT.esc(b.$replace("\\","/")));h=(new JU.SB).append(h)}else null==f?(null==h&&(h=(new JU.SB).append("load /*file*/$FILENAME$")),j=this.openFileFull(b,g,e,h)):j=q(f,java.io.Reader)?this.fm.createAtomSetCollectionFromReader(a,
b,f,e):this.fm.createAtomSetCollectionFromDOM(f,e);if(0!=k)return this.fm.setFileInfo(m),this.loadAtomDataAndReturnError(j,k);if(e.containsKey("isData"))return j;null!=h&&!q(j,String)&&(b=e.get("fullPathName"),null==b&&(b=""),e.containsKey("loadScript")&&(h=e.get("loadScript")),e.put("loadScript",h=(new JU.SB).append(JU.PT.rep(h.toString(),"$FILENAME$",JU.PT.esc(b.$replace("\\","/"))))));return this.createModelSetAndReturnError(j,g,h,e)},"~S,~S,~A,~O,~B,java.util.Map,JU.SB,JU.SB,~N,~B");c(c$,"setLigandModel",
function(a,b){null==this.ligandModels&&(this.ligandModels=new java.util.Hashtable);this.ligandModels.put(a,b)},"~S,~S");c(c$,"getLigandModel",function(a,b,c,f){if(null==a){if(null!=this.ligandModelSet)for(a=this.ligandModels.entrySet().iterator();a.hasNext();){var g=a.next();q(g.getValue(),Boolean)&&a.remove()}return null}var e=b.equals("ligand_");e&&(a=a.toUpperCase());null==this.ligandModelSet&&(this.ligandModelSet=new java.util.Hashtable);this.ligandModelSet.put(a,Boolean.TRUE);null==this.ligandModels&&
(this.ligandModels=new java.util.Hashtable);var h=0<a.indexOf("|");h&&(a=a.substring(a.indexOf("|")+1));var j=null==f?this.ligandModels.get(a):null,g=null;if(q(j,Boolean))return null;if(null==j&&(null==f||h))j=this.ligandModels.get(a+c);h=!1;if(null==j){if(e){g=this.setLoadFormat("#"+a,"#",!1);if(0==g.length)return null;this.scriptEcho("fetching "+g);j=this.getFileAsString3(g,!1,null)}else j=this.getFileAsString3(b,!1,null),f=null==f?-1:j.indexOf(f),0<=f&&(j=j.substring(0,f));(h=0==j.indexOf("java."))||
this.ligandModels.put(a+c,j)}if(!e)return j;!h&&q(j,String)&&(c=j,0!=c.length&&(e=new java.util.Hashtable,e.put("modelOnly",Boolean.TRUE),j=this.getModelAdapter().getAtomSetCollectionReader("ligand",null,JU.Rdr.getBR(c),e),h=q(j,String),h||(j=this.getModelAdapter().getAtomSetCollection(j),h=q(j,String),null!=g&&!h&&this.scriptEcho(this.getModelAdapter().getAtomSetCollectionAuxiliaryInfo(j).get("modelLoadNote")))));return h?(this.scriptEcho(j.toString()),this.ligandModels.put(a,Boolean.FALSE),null):
j},"~S,~S,~S,~S");c(c$,"openFileFull",function(a,b,c,f){if(null==a||0<=a.indexOf("[]"))return null;var g="openFile("+a+")";JU.Logger.startTimer(g);c=this.setLoadParameters(c,b);var e=a.startsWith("@"),h=c.containsKey("fileData");0==a.indexOf("$")&&c.put("smilesString",a.substring(1));var j=a.equalsIgnoreCase("string")||a.equals("Jmol Model Kit"),k=null;if(h){if(k=c.get("fileData"),c.containsKey("isData"))return this.loadInlineScript(k,"\x00",b,c)}else if(j){k=this.ms.getInlineData(-1);if(null==k)if(this.g.modelKitMode)k=
"5\n\nC 0 0 0\nH .63 .63 .63\nH -.63 -.63 .63\nH -.63 .63 -.63\nH .63 -.63 -.63";else return"cannot find string data";null!=f&&c.put("loadScript",f=(new JU.SB).append(JU.PT.rep(f.toString(),"$FILENAME$",'data "model inline"\n'+k+'end "model inline"')))}null!=k?(b||this.zap(!0,!1,!1),!e&&(!h||j)&&this.getStateCreator().getInlineData(f,k,b,this.g.defaultLoadFilter),a=this.fm.createAtomSetCollectionFromString(k,c,b)):a=this.fm.createAtomSetCollectionFromFile(a,c,b);JU.Logger.checkTimer(g,!1);return a},
"~S,~B,java.util.Map,JU.SB");j(c$,"openStringInline",function(a){a=this.openStringInlineParamsAppend(a,null,!1);this.refresh(1,"openStringInline");return a},"~S");c(c$,"loadInline",function(a){return this.loadInlineScriptRepaint(a,this.g.inlineNewlineChar,!1)},"~S");c(c$,"loadInline",function(a,b){return this.loadInlineScriptRepaint(a,b,!1)},"~S,~S");j(c$,"loadInlineAppend",function(a,b){return this.loadInlineScriptRepaint(a,"\x00",b)},"~S,~B");c(c$,"loadInlineScriptRepaint",function(a,b,c){a=this.loadInlineScript(a,
b,c,null);this.refresh(1,"loadInlineScript");return a},"~S,~S,~B");c(c$,"loadInline",function(a){return this.loadInline(a,!1)},"~A");c(c$,"loadInline",function(a,b){if(null==a||0==a.length)return null;var c=this.openStringsInlineParamsAppend(a,null,b);this.refresh(1,"loadInline String[]");return c},"~A,~B");c(c$,"loadInline",function(a,b){if(null==a||0==a.size())return null;b||this.zap(!0,!1,!1);for(var c=new JU.Lst,f=0;f<a.size();f++)c.addLast(a.get(f));c=this.fm.createAtomSeCollectionFromArrayData(c,
this.setLoadParameters(null,b),b);c=this.createModelSetAndReturnError(c,b,null,null);this.refresh(1,"loadInline");return c},"java.util.List,~B");c(c$,"loadInlineScript",function(a,b,c,f){if(null==a||0==a.length)return null;a=JV.Viewer.fixInlineString(a,b);0!=b.charCodeAt(0)&&JU.Logger.info("loading model inline, "+a.length+" bytes, with newLine character "+b.charCodeAt(0)+" isAppend="+c);JU.Logger.debugging&&JU.Logger.debug(a);b=this.getDataSeparator();var g;if(null!=b&&""!==b&&0<=(g=a.indexOf(b))&&
0>a.indexOf("# Jmol state")){for(var e=2;0<=(g=a.indexOf(b,g+1));)e++;var h=Array(e),j=0,k=0;for(g=0;g<e;g++)j=a.indexOf(b,k),0>j&&(j=a.length),h[g]=a.substring(k,j),k=j+b.length;return this.openStringsInlineParamsAppend(h,f,c)}return this.openStringInlineParamsAppend(a,f,c)},"~S,~S,~B,java.util.Map");c$.fixInlineString=c(c$,"fixInlineString",function(a,b){var c;0<=a.indexOf("\\/n")&&(a=JU.PT.rep(a,"\n",""),a=JU.PT.rep(a,"\\/n","\n"),b=String.fromCharCode(0));if(0!=b.charCodeAt(0)&&"\n"!=b){var f=
0<=a.indexOf("\n"),g=a.length;for(c=0;c<g&&" "==a.charAt(c);++c);c<g&&a.charAt(c)==b&&(a=a.substring(c+1));a=f?JU.PT.rep(a,""+b,""):a.$replace(b,"\n")}return a},"~S,~S");c(c$,"openStringInlineParamsAppend",function(a,b,c){var f=JU.Rdr.getBR(a),f=this.getModelAdapter().getFileTypeName(f);if(null==f)return"unknown file type";if(f.equals("spt"))return"cannot open script inline";b=this.setLoadParameters(b,c);var f=b.get("loadScript"),g=b.containsKey("isData");null==f&&(f=new JU.SB);c||this.zap(!0,!1,
!1);g||this.getStateCreator().getInlineData(f,a,c,this.g.defaultLoadFilter);a=this.fm.createAtomSetCollectionFromString(a,b,c);return this.createModelSetAndReturnError(a,c,f,null)},"~S,java.util.Map,~B");c(c$,"openStringsInlineParamsAppend",function(a,b,c){var f=new JU.SB;c||this.zap(!0,!1,!1);a=this.fm.createAtomSeCollectionFromStrings(a,f,this.setLoadParameters(b,c),c);return this.createModelSetAndReturnError(a,c,f,null)},"~A,java.util.Map,~B");c(c$,"getInlineChar",function(){return this.g.inlineNewlineChar});
c(c$,"getDataSeparator",function(){return this.g.getParameter("dataseparator",!0)});c(c$,"createModelSetAndReturnError",function(a,b,c,f){var g=this.fm.getFullPathName(!1),e=this.fm.getFileName();null==c&&(this.setBooleanProperty("preserveState",!1),c=(new JU.SB).append('load "???"'));if(q(a,String))return this.setFileLoadStatus(J.c.FIL.NOT_LOADED,g,null,null,a,null),this.displayLoadErrors&&(!b&&!a.equals("#CANCELED#")&&!a.startsWith(JV.JC.READER_NOT_FOUND))&&this.zapMsg(a),a;b?this.clearAtomSets():
this.g.modelKitMode&&!e.equals("Jmol Model Kit")&&this.setModelKitMode(!1);this.setFileLoadStatus(J.c.FIL.CREATING_MODELSET,g,e,null,null,null);this.pushHoldRepaintWhy("createModelSet");this.setErrorMessage(null,null);try{var h=new JU.BS;this.mm.createModelSet(g,e,c,a,h,b);if(0<h.cardinality()){var j=this.ms.getInfoM("jmolscript");if(this.ms.getMSInfoB("doMinimize"))try{this.minimize(f.get("eval"),2147483647,0,h,null,0,!0,!0,!0,!0)}catch(k){if(!B(k,Exception))throw k;}else this.addHydrogens(h,!1,
!0);null!=j&&this.ms.msInfo.put("jmolscript",j)}this.initializeModel(b)}catch(n){if(B(n,Error))this.handleError(n,!0),a=this.getShapeErrorState(),a="ERROR creating model: "+n+(0==a.length?"":"|"+a),this.zapMsg(a),this.setErrorMessage(a,null);else throw n;}this.popHoldRepaint("createModelSet \u0001## REPAINT_IGNORE ##");a=this.getErrorMessage();this.setFileLoadStatus(J.c.FIL.CREATED,g,e,this.ms.modelSetName,a,null==f?null:f.get("async"));b&&(this.selectAll(),this.setTainted(!0),this.axesAreTainted=
!0);System.gc();return a},"~O,~B,JU.SB,java.util.Map");c(c$,"loadAtomDataAndReturnError",function(a,b){if(q(a,String))return a;this.setErrorMessage(null,null);try{var c=this.mm.createAtomDataSet(a,b);switch(b){case 1146095626:null!=c&&this.runScript(c);break;case 4166:this.setStatusFrameChanged(!0,!0);break;case 1649412120:this.shm.deleteVdwDependentShapes(null)}}catch(f){if(B(f,Error))this.handleError(f,!0),c=this.getShapeErrorState(),c="ERROR adding atom data: "+f+(0==c.length?"":"|"+c),this.zapMsg(c),
this.setErrorMessage(c,null),this.setParallel(!1);else throw f;}return this.getErrorMessage()},"~O,~N");c(c$,"getCurrentFileAsString",function(a){var b=this.fm.getFullPathName(!1);return b.equals("string")||b.equals("Jmol Model Kit")?this.ms.getInlineData(this.am.cmi):0<=b.indexOf("[]")?b:"JSNode"===b?"<DOM NODE>":this.getFileAsString4(b,-1,!0,!1,!1,a)},"~S");c(c$,"getFullPathNameOrError",function(a){var b=Array(2);this.fm.getFullPathNameOrError(a,!1,b);return b},"~S");c(c$,"getFileAsString3",function(a,
b,c){return this.getFileAsString4(a,-1,!1,!1,b,c)},"~S,~B,~S");c(c$,"getFileAsString4",function(a,b,c,f,g,e){if(null==a)return this.getCurrentFileAsString(e);e=Array(2);e[0]=a;this.fm.getFileDataAsString(e,b,c,f,g);return e[1]},"~S,~N,~B,~B,~B,~S");c(c$,"autoCalculate",function(a){switch(a){case 1112539151:this.ms.getSurfaceDistanceMax();break;case 1112539150:this.ms.calculateStraightness()}},"~N");c(c$,"calculateStraightness",function(){this.ms.haveStraightness=!1;this.ms.calculateStraightness()});
c(c$,"calculateSurface",function(a,b){null==a&&(a=this.bsA());if(3.4028235E38==b||-1==b)this.ms.addStateScript("calculate surfaceDistance "+(3.4028235E38==b?"FROM":"WITHIN"),null,a,null,"",!1,!0);return this.ms.calculateSurface(a,b)},"JU.BS,~N");c(c$,"getStructureList",function(){return this.g.getStructureList()});c(c$,"setStructureList",function(a,b){this.g.setStructureList(a,b);this.ms.setStructureList(this.getStructureList())},"~A,J.c.STR");c(c$,"calculateStructures",function(a,b,c){null==a&&(a=
this.bsA());return this.ms.calculateStructures(a,b,!this.am.animationOn,this.g.dsspCalcHydrogen,c)},"JU.BS,~B,~B");c(c$,"getAnnotationParser",function(){return null==this.annotationParser?this.annotationParser=J.api.Interface.getOption("dssx.AnnotationParser",this,"script"):this.annotationParser});j(c$,"getSelectedAtomIterator",function(a,b,c,f){return this.ms.getSelectedAtomIterator(a,b,c,!1,f)},"JU.BS,~B,~B,~B");j(c$,"setIteratorForAtom",function(a,b,c){this.ms.setIteratorForAtom(a,-1,b,c,null)},
"J.api.AtomIndexIterator,~N,~N");j(c$,"setIteratorForPoint",function(a,b,c,f){this.ms.setIteratorForPoint(a,b,c,f)},"J.api.AtomIndexIterator,~N,JU.T3,~N");j(c$,"fillAtomData",function(a,b){a.programInfo="Jmol Version "+JV.Viewer.getJmolVersion();a.fileName=this.fm.getFileName();this.ms.fillAtomData(a,b)},"J.atomdata.AtomData,~N");c(c$,"addStateScript",function(a,b,c){return this.ms.addStateScript(a,null,null,null,null,b,c)},"~S,~B,~B");c(c$,"getMinimizer",function(a){return null==this.minimizer&&
a?(this.minimizer=J.api.Interface.getInterface("JM.Minimizer",this,"script")).setProperty("vwr",this):this.minimizer},"~B");c(c$,"getSmilesMatcher",function(){return null==this.smilesMatcher?this.smilesMatcher=J.api.Interface.getInterface("JS.SmilesMatcher",this,"script"):this.smilesMatcher});c(c$,"clearModelDependentObjects",function(){this.setFrameOffsets(null);this.stopMinimization();this.smilesMatcher=this.minimizer=null});c(c$,"zap",function(a,b,c){this.clearThreads();null==this.mm.modelSet?
this.mm.zap():(this.ligandModelSet=null,this.clearModelDependentObjects(),this.fm.clear(),this.clearRepaintManager(-1),this.am.clear(),this.tm.clear(),this.slm.clear(),this.clearAllMeasurements(),this.clearMinimization(),this.gdata.clear(),this.mm.zap(),null!=this.scm&&this.scm.clear(!1),null!=this.nmrCalculation&&this.getNMRCalculation().setChemicalShiftReference(null,0),this.haveDisplay&&(this.mouse.clear(),this.clearTimeouts(),this.acm.clear()),this.stm.clear(this.g),this.tempArray.clear(),this.chainMap.clear(),
this.chainList.clear(),this.definedAtomSets.clear(),this.lastData=null,null!=this.dm&&this.dm.clear(),this.setBooleanProperty("legacyjavafloat",!1),b&&(c&&this.g.modelKitMode&&(this.openStringInlineParamsAppend("5\n\nC 0 0 0\nH .63 .63 .63\nH -.63 -.63 .63\nH -.63 .63 -.63\nH .63 -.63 -.63",null,!0),this.setRotationRadius(5,!0),this.setStringProperty("picking","assignAtom_C"),this.setStringProperty("picking","assignBond_p")),this.undoClear()),System.gc());this.initializeModel(!1);a&&this.setFileLoadStatus(J.c.FIL.ZAPPED,
null,b?"resetUndo":this.getZapName(),null,null,null);JU.Logger.debugging&&JU.Logger.checkMemory()},"~B,~B,~B");c(c$,"zapMsg",function(a){this.zap(!0,!0,!1);this.echoMessage(a)},"~S");c(c$,"echoMessage",function(a){this.shm.loadShape(31);this.setShapeProperty(31,"font",this.getFont3D("SansSerif","Plain",9));this.setShapeProperty(31,"target","error");this.setShapeProperty(31,"text",a)},"~S");c(c$,"initializeModel",function(a){this.clearThreads();a?this.am.initializePointers(1):(this.reset(!0),this.selectAll(),
this.rotatePrev1=this.rotateBondIndex=-1,this.movingSelected=!1,this.slm.noneSelected=Boolean.FALSE,this.hoverEnabled=!0,this.tm.setCenter(),this.am.initializePointers(1),this.ms.getMSInfoB("isPyMOL")||(this.clearAtomSets(),this.setCurrentModelIndex(0)),this.setBackgroundModelIndex(-1),this.setFrankOn(this.getShowFrank()),this.startHoverWatcher(!0),this.setTainted(!0),this.finalizeTransformParameters())},"~B");c(c$,"startHoverWatcher",function(a){a&&this.inMotion||(!this.haveDisplay||a&&(!this.hoverEnabled||
this.am.animationOn))||this.acm.startHoverWatcher(a)},"~B");j(c$,"getModelSetPathName",function(){return this.mm.modelSetPathName});j(c$,"getModelSetFileName",function(){return null==this.mm.fileName?this.getZapName():this.mm.fileName});c(c$,"getUnitCellInfoText",function(){var a=this.getCurrentUnitCell();return null==a?"not applicable":a.getUnitCellInfo()});c(c$,"getUnitCellInfo",function(a){var b=this.getCurrentUnitCell();return null==b?NaN:b.getUnitCellInfoType(a)},"~N");c(c$,"getV0abc",function(a){var b=
this.getCurrentUnitCell();return null==b?null:b.getV0abc(a)},"~O");c(c$,"getPolymerPointsAndVectors",function(a,b){this.ms.getPolymerPointsAndVectors(a,b,this.g.traceAlpha,this.g.sheetSmoothing)},"JU.BS,JU.Lst");c(c$,"getHybridizationAndAxes",function(a,b,c,f){return this.ms.getHybridizationAndAxes(a,0,b,c,f,!0,!0)},"~N,JU.V3,JU.V3,~S");c(c$,"getAllAtoms",function(){return this.getModelUndeletedAtomsBitSet(-1)});c(c$,"getModelUndeletedAtomsBitSet",function(a){return this.slm.excludeAtoms(this.ms.getModelAtomBitSetIncludingDeleted(a,
!0),!1)},"~N");c(c$,"getModelUndeletedAtomsBitSetBs",function(a){return this.slm.excludeAtoms(this.ms.getModelAtomBitSetIncludingDeletedBs(a),!1)},"JU.BS");j(c$,"getBoundBoxCenter",function(){return this.ms.getBoundBoxCenter(this.am.cmi)});c(c$,"calcBoundBoxDimensions",function(a,b){this.ms.calcBoundBoxDimensions(a,b);this.axesAreTainted=!0},"JU.BS,~N");j(c$,"getBoundBoxCornerVector",function(){return this.ms.getBoundBoxCornerVector()});c(c$,"getBoundBoxCenterX",function(){return x(this.dimScreen.width/
2)});c(c$,"getBoundBoxCenterY",function(){return x(this.dimScreen.height/2)});j(c$,"getModelSetProperties",function(){return this.ms.modelSetProperties});j(c$,"getModelProperties",function(a){return this.ms.am[a].properties},"~N");j(c$,"getModelSetAuxiliaryInfo",function(){return this.ms.msInfo});j(c$,"getModelNumber",function(a){return 0>a?a:this.ms.getModelNumber(a)},"~N");c(c$,"getModelFileNumber",function(a){return 0>a?0:this.ms.modelFileNumbers[a]},"~N");j(c$,"getModelNumberDotted",function(a){return 0>
a?"0":this.ms.getModelNumberDotted(a)},"~N");j(c$,"getModelName",function(a){return this.ms.getModelName(a)},"~N");c(c$,"modelHasVibrationVectors",function(a){return 0<=this.ms.getLastVibrationVector(a,4166)},"~N");c(c$,"getBondsForSelectedAtoms",function(a){return this.ms.getBondsForSelectedAtoms(a,this.g.bondModeOr||1==JU.BSUtil.cardinalityOf(a))},"JU.BS");c(c$,"frankClicked",function(a,b){return!this.g.disablePopupMenu&&this.getShowFrank()&&this.shm.checkFrankclicked(a,b)},"~N,~N");c(c$,"frankClickedModelKit",
function(a,b){return!this.g.disablePopupMenu&&this.g.modelKitMode&&0<=a&&0<=b&&40>a&&80>b},"~N,~N");j(c$,"findNearestAtomIndex",function(a,b){return this.findNearestAtomIndexMovable(a,b,!1)},"~N,~N");c(c$,"findNearestAtomIndexMovable",function(a,b,c){return!this.g.atomPicking?-1:this.ms.findNearestAtomIndex(a,b,c?this.slm.getMotionFixedAtoms():null,this.g.minPixelSelRadius)},"~N,~N,~B");c(c$,"toCartesian",function(a,b){var c=this.getCurrentUnitCell();null!=c&&(c.toCartesian(a,b),this.g.legacyJavaFloat||
JU.PT.fixPtFloats(a,1E4))},"JU.T3,~B");c(c$,"toFractional",function(a,b){var c=this.getCurrentUnitCell();null!=c&&(c.toFractional(a,b),this.g.legacyJavaFloat||JU.PT.fixPtFloats(a,1E5))},"JU.T3,~B");c(c$,"toUnitCell",function(a,b){var c=this.getCurrentUnitCell();null!=c&&c.toUnitCell(a,b)},"JU.P3,JU.P3");c(c$,"setCurrentCage",function(a){a=[a,null];this.shm.getShapePropertyData(24,"unitCell",a);this.ms.setModelCage(this.am.cmi,a[1])},"~S");c(c$,"addUnitCellOffset",function(a){var b=this.getCurrentUnitCell();
null!=b&&a.add(b.getCartesianOffset())},"JU.P3");c(c$,"setAtomData",function(a,b,c,f){this.ms.setAtomData(a,b,c,f);2==a&&this.checkCoordinatesChanged();this.refreshMeasures(!0)},"~N,~S,~S,~B");j(c$,"setCenterSelected",function(){this.setCenterBitSet(this.bsA(),!0)});c(c$,"setApplySymmetryToBonds",function(a){this.g.applySymmetryToBonds=a},"~B");j(c$,"setBondTolerance",function(a){this.g.setF("bondTolerance",a);this.g.bondTolerance=a},"~N");j(c$,"setMinBondDistance",function(a){this.g.setF("minBondDistance",
a);this.g.minBondDistance=a},"~N");c(c$,"getAtomsNearPt",function(a,b){var c=new JU.BS;this.ms.getAtomsWithin(a,b,c,-1);return c},"~N,JU.P3");c(c$,"getBranchBitSet",function(a,b,c){return 0>a||a>=this.ms.ac?new JU.BS:JU.JmolMolecule.getBranchBitSet(this.ms.at,a,this.getModelUndeletedAtomsBitSet(this.ms.at[a].mi),null,b,c,!0)},"~N,~N,~B");c(c$,"getAtomIndexFromAtomNumber",function(a){return this.ms.getAtomIndexFromAtomNumber(a,this.getVisibleFramesBitSet())},"~N");j(c$,"getElementsPresentBitSet",function(a){return this.ms.getElementsPresentBitSet(a)},
"~N");c(c$,"getFileHeader",function(){return this.ms.getFileHeader(this.am.cmi)});c(c$,"getFileData",function(){return this.ms.getFileData(this.am.cmi)});c(c$,"getCifData",function(a){a=this.getFileAsString3(this.ms.getModelFileName(a),!1,null);return null==a?null:JU.Rdr.readCifData(J.api.Interface.getInterface("JU.CifDataParser",this,"script"),JU.Rdr.getBR(a))},"~N");c(c$,"getStateCreator",function(){null==this.jsc&&(this.jsc=J.api.Interface.getInterface("JV.StateCreator",this,"script")).setViewer(this);
return this.jsc});c(c$,"getWrappedStateScript",function(){return this.getOutputManager().getWrappedState(null,null,null,null)});j(c$,"getStateInfo",function(){return this.getStateInfo3(null,0,0)});c(c$,"getStateInfo3",function(a,b,c){return this.g.preserveState?this.getStateCreator().getStateScript(a,b,c):""},"~S,~N,~N");c(c$,"getStructureState",function(){return this.getStateCreator().getModelState(null,!1,!0)});c(c$,"getProteinStructureState",function(){return this.ms.getProteinStructureState(this.bsA(),
!1,!1,3)});c(c$,"getCoordinateState",function(a){return this.getStateCreator().getAtomicPropertyState(2,a)},"JU.BS");c(c$,"setCurrentColorRange",function(a){var b=this.getDataFloat(a);a=null==b?null:this.getDataManager().getData(a)[2];null!=a&&this.g.rangeSelected&&a.and(this.bsA());this.cm.setPropertyColorRangeData(b,a)},"~S");c(c$,"setData",function(a,b,c,f,g,e,h){this.getDataManager().setData(a,this.lastData=b,c,this.ms.ac,f,g,e,h)},"~S,~A,~N,~N,~N,~N,~N");c(c$,"getData",function(a){return null==
a?this.lastData:this.getDataManager().getData(a)},"~S");c(c$,"getDataFloat",function(a){return this.getDataManager().getDataFloatA(a)},"~S");c(c$,"getDataFloat2D",function(a){return this.getDataManager().getDataFloat2D(a)},"~S");c(c$,"getDataFloat3D",function(a){return this.getDataManager().getDataFloat3D(a)},"~S");c(c$,"getDataFloatAt",function(a,b){return this.getDataManager().getDataFloat(a,b)},"~S,~N");c(c$,"autoHbond",function(a,b,c){null==a&&(a=b=this.bsA());return this.ms.autoHbond(a,b,c)},
"JU.BS,JU.BS,~B");c(c$,"getCurrentUnitCell",function(){if(0<=this.am.cai)return this.ms.getUnitCellForAtom(this.am.cai);var a=this.am.cmi;if(0<=a)return this.ms.getUnitCell(a);for(var a=this.getVisibleFramesBitSet(),b=null,c=a.nextSetBit(0);0<=c;c=a.nextSetBit(c+1)){var f=this.ms.getUnitCell(c);if(null!=f)if(null==b)b=f;else if(!b.unitCellEquals(f))return null}return b});c(c$,"getDefaultMeasurementLabel",function(a){switch(a){case 2:return this.g.defaultDistanceLabel;case 3:return this.g.defaultAngleLabel;
default:return this.g.defaultTorsionLabel}},"~N");j(c$,"getMeasurementCount",function(){var a=this.getShapePropertyAsInt(6,"count");return 0>=a?0:a});j(c$,"getMeasurementStringValue",function(a){return""+this.shm.getShapePropertyIndex(6,"stringValue",a)},"~N");c(c$,"getMeasurementInfoAsString",function(){return this.getShapeProperty(6,"infostring")});j(c$,"getMeasurementCountPlusIndices",function(a){return this.shm.getShapePropertyIndex(6,"countPlusIndices",a)},"~N");c(c$,"setPendingMeasurement",
function(a){this.shm.loadShape(6);this.setShapeProperty(6,"pending",a)},"JM.MeasurementPending");c(c$,"getPendingMeasurement",function(){return this.getShapeProperty(6,"pending")});c(c$,"clearAllMeasurements",function(){this.setShapeProperty(6,"clear",null)});j(c$,"clearMeasurements",function(){this.evalString("measures delete")});c(c$,"setAnimation",function(a){switch(a){case 1073742098:this.am.reverseAnimation();case 1073742096:case 4143:this.am.animationOn||this.am.resumeAnimation();break;case 20487:this.am.animationOn&&
!this.am.animationPaused&&this.am.pauseAnimation();break;case 1073742037:this.am.setAnimationNext();break;case 1073742108:this.am.setAnimationPrevious();break;case 1073741942:case 1073742125:this.am.rewindAnimation();break;case 1073741993:this.am.setAnimationLast()}},"~N");j(c$,"setAnimationFps",function(a){this.am.setAnimationFps(a)},"~N");c(c$,"setAnimationMode",function(a){a.equalsIgnoreCase("once")?this.am.setAnimationReplayMode(1073742070,0,0):a.equalsIgnoreCase("loop")?this.am.setAnimationReplayMode(528410,
1,1):a.startsWith("pal")&&this.am.setAnimationReplayMode(1073742082,1,1)},"~S");c(c$,"setAnimationOn",function(a){a!=this.am.animationOn&&this.am.setAnimationOn(a)},"~B");c(c$,"setAnimationRange",function(a,b){this.am.setAnimationRange(a,b)},"~N,~N");j(c$,"getVisibleFramesBitSet",function(){return this.ms.selectDisplayedTrajectories(JU.BSUtil.copy(this.am.bsVisibleModels))});c(c$,"defineAtomSets",function(a){this.definedAtomSets.putAll(a)},"java.util.Map");c(c$,"setAnimDisplay",function(a){this.am.setDisplay(a);
this.am.animationOn||this.am.morph(this.am.currentMorphModel+1)},"JU.BS");c(c$,"setCurrentModelIndex",function(a){-2147483648==a?(this.prevFrame=-2147483648,this.setCurrentModelIndexClear(this.am.cmi,!0)):this.am.setModel(a,!0)},"~N");c(c$,"getTrajectoryState",function(){return this.getStateCreator().getTrajectoryState()});c(c$,"setFrameOffsets",function(a){this.frameOffsets=this.ms.getFrameOffsets(this.bsFrameOffsets=a)},"JU.BS");c(c$,"setCurrentModelIndexClear",function(a,b){this.am.setModel(a,
b)},"~N,~B");c(c$,"haveFileSet",function(){return 1<this.ms.mc&&2E6<this.getModelNumber(2147483647)});c(c$,"setBackgroundModelIndex",function(a){this.am.setBackgroundModelIndex(a);this.g.setO("backgroundModel",this.ms.getModelNumberDotted(a))},"~N");c(c$,"setFrameVariables",function(){this.g.setO("animationMode",JS.T.nameOf(this.am.animationReplayMode));this.g.setI("animationFps",this.am.animationFps);this.g.setO("_firstFrame",this.am.getModelSpecial(-1));this.g.setO("_lastFrame",this.am.getModelSpecial(1));
this.g.setF("_animTimeSec",this.am.getAnimRunTimeSeconds());this.g.setB("_animMovie",this.am.isMovie)});c(c$,"getInMotion",function(a){return this.inMotion||a&&this.am.animationOn},"~B");j(c$,"getMotionEventNumber",function(){return this.motionEventNumber});j(c$,"setInMotion",function(a){(new Boolean(this.inMotion^a)).valueOf()&&(this.inMotion=a,this.resizeImage(0,0,!1,!1,!0),a?(this.startHoverWatcher(!1),++this.motionEventNumber):(this.startHoverWatcher(!0),this.refresh(3,"vwr setInMotion "+a)))},
"~B");c(c$,"setRefreshing",function(a){this.refreshing=a},"~B");c(c$,"getRefreshing",function(){return this.refreshing});j(c$,"pushHoldRepaint",function(){this.pushHoldRepaintWhy(null)});c(c$,"pushHoldRepaintWhy",function(a){null!=this.rm&&this.rm.pushHoldRepaint(a)},"~S");j(c$,"popHoldRepaint",function(a){null!=this.rm&&this.rm.popHoldRepaint(0>a.indexOf("\u0001## REPAINT_IGNORE ##"),a)},"~S");j(c$,"refresh",function(a,b){if(null!=this.rm&&this.refreshing&&!(6==a&&this.getInMotion(!0))){if(this.isWebGL){if(1==
a||2==a||7==a){this.tm.finalizeTransformParameters();if(!this.html5Applet)return;this.html5Applet._refresh()}}else 0<a&&7!=a&&this.rm.repaintIfReady("refresh "+a+" "+b);7!=a&&(0!=a%3&&this.sm.doSync())&&this.sm.setSync(2==a?b:null)}},"~N,~S");c(c$,"requestRepaintAndWait",function(a){this.haveDisplay&&null!=this.rm&&(this.rm.requestRepaintAndWait(a),this.setSync())},"~S");c(c$,"clearShapeRenderers",function(){this.clearRepaintManager(-1)});c(c$,"isRepaintPending",function(){return null==this.rm?!1:
this.rm.isRepaintPending()});j(c$,"notifyViewerRepaintDone",function(){null!=this.rm&&this.rm.repaintDone();this.am.repaintDone()});c(c$,"areAxesTainted",function(){var a=this.axesAreTainted;this.axesAreTainted=!1;return a});c(c$,"setMaximumSize",function(a){this.maximumSize=Math.max(a,100)},"~N");j(c$,"setScreenDimension",function(a,b){b=Math.min(b,this.maximumSize);a=Math.min(a,this.maximumSize);this.isStereoDouble()&&(a=x((a+1)/2));this.dimScreen.width==a&&this.dimScreen.height==b||this.resizeImage(a,
b,!1,!1,!0)},"~N,~N");c(c$,"setStereo",function(a,b){this.isStereoSlave=a;this.gRight=b},"~B,~O");c(c$,"getImageFontScaling",function(){return this.imageFontScaling});c(c$,"resizeImage",function(a,b,c,f,g){if(c||!this.creatingImage)!f&&!c&&this.setShapeProperty(5,"clearBoxes",null),this.antialiased=g?this.g.antialiasDisplay&&this.checkMotionRendering(603979786):c&&!f?this.g.antialiasImages:!1,this.imageFontScaling=(g||0>=a?1:x((this.g.zoomLarge==b>a?b:a)/this.getScreenDim()))*(this.antialiased?2:
1),0<a?(this.dimScreen.width=a,this.dimScreen.height=b,c||(this.g.setI("_width",a),this.g.setI("_height",b))):(a=0==this.dimScreen.width?this.dimScreen.width=500:this.dimScreen.width,b=0==this.dimScreen.height?this.dimScreen.height=500:this.dimScreen.height),this.tm.setScreenParameters(a,b,c||g?this.g.zoomLarge:!1,this.antialiased,!1,!1),this.gdata.setWindowParameters(a,b,this.antialiased),0<a&&!c&&this.setStatusResized(a,b)},"~N,~N,~B,~B,~B");j(c$,"getScreenWidth",function(){return this.dimScreen.width});
j(c$,"getScreenHeight",function(){return this.dimScreen.height});c(c$,"getScreenDim",function(){return this.g.zoomLarge==this.dimScreen.height>this.dimScreen.width?this.dimScreen.height:this.dimScreen.width});j(c$,"generateOutputForExport",function(a){return this.noGraphicsAllowed||null==this.rm?null:this.getOutputManager().getOutputFromExport(a)},"java.util.Map");c(c$,"clearRepaintManager",function(a){null!=this.rm&&this.rm.clear(a)},"~N");c(c$,"renderScreenImageStereo",function(a,b,c,f){this.updateWindow(c,
f)&&(!b||null==this.gRight?this.getScreenImageBuffer(a,!1):(this.render1(this.gRight,this.getImage(!0,!1),0,0),this.render1(a,this.getImage(!1,!1),0,0)));null!=this.captureParams&&Boolean.FALSE!==this.captureParams.get("captureEnabled")&&(a=this.captureParams.get("endTime").longValue(),0<a&&System.currentTimeMillis()+50>a&&this.captureParams.put("captureMode","end"),this.processWriteOrCapture(this.captureParams));this.notifyViewerRepaintDone()},"~O,~B,~N,~N");c(c$,"updateJS",function(){this.isWebGL?
(null==this.jsParams&&(this.jsParams=new java.util.Hashtable,this.jsParams.put("type","JS")),this.updateWindow(0,0)&&this.render(),this.notifyViewerRepaintDone()):this.isStereoSlave||this.renderScreenImageStereo(this.apiPlatform.getGraphics(null),!0,0,0)});c(c$,"updateJSView",function(a,b){var c=this.html5Applet;c&&null!=c._viewSet&&c._atomPickedCallback(a,b)},"~N,~N");c(c$,"updateWindow",function(a,b){if(!this.refreshing||this.creatingImage)return!1;(this.isTainted||this.tm.slabEnabled)&&this.setModelVisibility();
this.isTainted=!1;null!=this.rm&&0!=a&&this.setScreenDimension(a,b);return!0},"~N,~N");c(c$,"renderScreenImage",function(a,b,c){this.renderScreenImageStereo(a,!1,b,c)},"~O,~N,~N");c(c$,"getImage",function(a,b){if(this.isWebGL)return null;var c=null;try{this.beginRendering(a,b),this.render(),this.gdata.endRendering(),c=this.gdata.getScreenImage(b)}catch(f){if(B(f,Error))this.gdata.getScreenImage(b),this.handleError(f,!1),this.setErrorMessage("Error during rendering: "+f,null);else if(B(f,Exception))System.out.println("render error");
else throw f;}return c},"~B,~B");c(c$,"beginRendering",function(a,b){this.gdata.beginRendering(this.tm.getStereoRotationMatrix(a),this.g.translucent,b,!this.checkMotionRendering(603979967))},"~B,~B");c(c$,"render",function(){if(!(null==this.mm.modelSet||!this.mustRender||!this.refreshing&&!this.creatingImage||null==this.rm)){var a=this.antialiased&&this.g.antialiasTranslucent;this.finalizeTransformParameters();var b=this.shm.finalizeAtoms(this.tm.bsSelectedAtoms,this.tm.ptOffset);this.tm.bsSelectedAtoms=
null;this.isWebGL?(this.rm.renderExport(this.gdata,this.ms,this.jsParams),this.notifyViewerRepaintDone()):(this.rm.render(this.gdata,this.ms,!0,b),this.gdata.setPass2(a)&&(this.tm.setAntialias(a),this.rm.render(this.gdata,this.ms,!1,null),this.tm.setAntialias(this.antialiased)))}});c(c$,"render1",function(a,b,c,f){null!=a&&null!=b&&this.apiPlatform.drawImage(a,b,c,f,this.dimScreen.width,this.dimScreen.height);this.gdata.releaseScreenImage()},"~O,~O,~N,~N");j(c$,"getScreenImageBuffer",function(a,b){if(this.isWebGL)return null;
var c=null==a&&this.isStereoDouble(),f;this.tm.stereoMode.isBiColor()?(this.beginRendering(!0,b),this.render(),this.gdata.endRendering(),this.gdata.snapshotAnaglyphChannelBytes(),this.beginRendering(!1,b),this.render(),this.gdata.endRendering(),this.gdata.applyAnaglygh(this.tm.stereoMode,this.tm.stereoColors),f=this.gdata.getScreenImage(b)):f=this.getImage(this.isStereoDouble(),b);var g=null;c&&(g=this.apiPlatform.newBufferedImage(f,this.dimScreen.width<<1,this.dimScreen.height),a=this.apiPlatform.getGraphics(g));
null!=a&&(this.isStereoDouble()&&(this.render1(a,f,this.dimScreen.width,0),f=this.getImage(!1,!1)),this.render1(a,f,0,0));return c?g:f},"~O,~B");j(c$,"getImageAsBytes",function(a,b,c,f,g){return this.isWebGL?null:this.getOutputManager().getImageAsBytes(a,b,c,f,g)},"~S,~N,~N,~N,~A");j(c$,"releaseScreenImage",function(){this.gdata.releaseScreenImage()});j(c$,"evalFile",function(a){return this.allowScripting&&null!=this.getScriptManager()?this.scm.evalFile(a):null},"~S");c(c$,"getInsertedCommand",function(){var a=
this.insertedCommand;this.insertedCommand="";JU.Logger.debugging&&""!==a&&JU.Logger.debug("inserting: "+a);return a});j(c$,"script",function(a){return this.evalStringQuietSync(a,!1,!0)},"~S");j(c$,"evalString",function(a){return this.evalStringQuietSync(a,!1,!0)},"~S");j(c$,"evalStringQuiet",function(a){return this.evalStringQuietSync(a,!0,!0)},"~S");c(c$,"evalStringQuietSync",function(a,b,c){return null==this.getScriptManager()?null:this.scm.evalStringQuietSync(a,b,c)},"~S,~B,~B");c(c$,"clearScriptQueue",
function(){null!=this.scm&&this.scm.clearQueue()});c(c$,"setScriptQueue",function(a){(this.g.useScriptQueue=a)||this.clearScriptQueue()},"~B");j(c$,"checkHalt",function(a,b){return null!=this.scm&&this.scm.checkHalt(a,b)},"~S,~B");j(c$,"scriptWait",function(a){return this.evalWait("JSON",a,"+scriptStarted,+scriptStatus,+scriptEcho,+scriptTerminated")},"~S");j(c$,"scriptWaitStatus",function(a,b){return this.evalWait("object",a,b)},"~S,~S");c(c$,"evalWait",function(a,b,c){if(null==this.getScriptManager())return null;
this.scm.waitForQueue();var f=J.i18n.GT.setDoTranslate(!1);a=this.evalStringWaitStatusQueued(a,b,c,!1,!1);J.i18n.GT.setDoTranslate(f);return a},"~S,~S,~S");c(c$,"evalStringWaitStatusQueued",function(a,b,c,f,g){return 0==b.indexOf("JSCONSOLE")?(this.html5Applet._showInfo(0>b.indexOf("CLOSE")),0<=b.indexOf("CLEAR")&&this.html5Applet._clearConsole(),null):null==this.getScriptManager()?null:this.scm.evalStringWaitStatusQueued(a,b,c,f,g)},"~S,~S,~S,~B,~B");c(c$,"exitJmol",function(){if(!this.isApplet||
this.isJNLP){if(null!=this.headlessImageParams)try{this.headless&&this.outputToFile(this.headlessImageParams)}catch(a){if(!B(a,Exception))throw a;}JU.Logger.debugging&&JU.Logger.debug("exitJmol -- exiting");System.out.flush();System.exit(0)}});c(c$,"scriptCheckRet",function(a,b){return null==this.getScriptManager()?null:this.scm.scriptCheckRet(a,b)},"~S,~B");j(c$,"scriptCheck",function(a){return null==this.getScriptManager()?null:this.scriptCheckRet(a,!1)},"~S");j(c$,"isScriptExecuting",function(){return null!=
this.eval&&this.eval.isExecuting()});j(c$,"haltScriptExecution",function(){null!=this.eval&&(this.eval.haltExecution(),this.eval.stopScriptThreads());this.setStringPropertyTok("pathForAllFiles",545259571,"");this.clearTimeouts()});c(c$,"pauseScriptExecution",function(){null!=this.eval&&this.eval.pauseExecution(!0)});c(c$,"resolveDatabaseFormat",function(a){JV.Viewer.hasDatabasePrefix(a)&&(a=this.setLoadFormat(a,a.charAt(0),!1));return a},"~S");c$.isDatabaseCode=c(c$,"isDatabaseCode",function(a){return"*"==
a||"$"==a||"="==a||":"==a},"~S");c$.hasDatabasePrefix=c(c$,"hasDatabasePrefix",function(a){return 0!=a.length&&JV.Viewer.isDatabaseCode(a.charAt(0))},"~S");c(c$,"setLoadFormat",function(a,b,c){var f=a.substring(1);switch(b){case "=":if(a.startsWith("=="))f=f.substring(1),b="#";else if(0<f.indexOf("/"))try{var g=f.indexOf("/"),e=f.substring(0,g),f=this.g.resolveDataBase(e,f.substring(g+1));return null==f?a:f}catch(h){if(B(h,Exception))return a;throw h;}case "#":return c="="==b?this.g.loadFormat:this.g.loadLigandFormat,
0<f.indexOf(".")&&0<=c.indexOf("%FILE.")&&(c=c.substring(0,c.indexOf("%FILE")+5)),JU.PT.formatStringS(c,"FILE",f);case "*":return g=a.lastIndexOf("/"),a.startsWith("*dom/")?(f=a.substring(g+1),a=4<g?a.substring(5):"mappings",JU.PT.rep(this.g.resolveDataBase("map",f),"%TYPE",a)):a.startsWith("*val/")?(f=a.substring(g+1),a=4<g?a.substring(5):"validation/outliers/all",JU.PT.rep(this.g.resolveDataBase("map",f),"%TYPE",a)):a.startsWith("*rna3d/")?(f=a.substring(g+1),a=6<g?a.substring(6):"loops",JU.PT.rep(this.g.resolveDataBase("rna3d",
f),"%TYPE",a)):a.startsWith("*dssr/")?(f=a.substring(g+1),this.g.resolveDataBase("dssr",f)):this.g.resolveDataBase("pdbe",f);case ":":a=this.g.pubChemFormat;if(f.equals(""))try{f="smiles:"+this.getSmiles(this.bsA())}catch(j){if(!B(j,Exception))throw j;}c=f.toLowerCase();b=-2147483648;try{b=Integer.parseInt(f)}catch(k){if(!B(k,Exception))throw k;}-2147483648!=b?f="cid/"+b:c.startsWith("smiles:")?(a+="?POST?smiles="+f.substring(7),f="smiles"):f.startsWith("cid:")||f.startsWith("inchikey:")||f.startsWith("cas:")?
f=f.$replace(":","/"):(c.startsWith("name:")&&(f=f.substring(5)),f="name/"+JU.PT.escapeUrl(f));return JU.PT.formatStringS(a,"FILE",f);case "$":if(a.startsWith("$$"))return f=f.substring(1),a=JU.PT.rep(this.g.smilesUrlFormat,"&get3d=True",""),JU.PT.formatStringS(a,"FILE",JU.PT.escapeUrl(f));if(a.equals("$"))try{f=this.getSmiles(this.bsA())}catch(n){if(!B(n,Exception))throw n;}case "N":case "2":case "I":case "K":case "S":case "T":case "/":f=JU.PT.escapeUrl(f);switch(b){case "N":a=this.g.nihResolverFormat+
"/names";break;case "2":a=this.g.nihResolverFormat+"/image";break;case "I":a=this.g.nihResolverFormat+"/stdinchi";break;case "K":a=this.g.nihResolverFormat+"/inchikey";break;case "S":a=this.g.nihResolverFormat+"/stdinchikey";break;case "T":a=this.g.nihResolverFormat+"/stdinchi";break;case "/":a=this.g.nihResolverFormat+"/";break;default:a=this.g.smilesUrlFormat}return(c?"MOL3D::":"")+JU.PT.formatStringS(a,"FILE",f);case "_":return(c=f.startsWith("="))&&(f=f.substring(1)),a=JV.FileManager.fixFileNameVariables(c?
this.g.edsUrlFormatDiff:this.g.edsUrlFormat,f),f=c?"":JV.FileManager.fixFileNameVariables(this.g.edsUrlCutoff,f),[a,f,c?"diff":null]}return f},"~S,~S,~B");c(c$,"getStandardLabelFormat",function(a){switch(a){default:case 0:return"%[identify]";case 1:return this.g.defaultLabelXYZ;case 2:return this.g.defaultLabelPDB}},"~N");c(c$,"getAdditionalHydrogens",function(a,b,c,f){null==a&&(a=this.bsA());var g=E(1,0);a=this.ms.calculateHydrogens(a,g,b,c,f);g=Array(g[0]);for(c=b=0;b<a.length;b++)if(null!=a[b])for(f=
0;f<a[b].length;f++)g[c++]=a[b][f];return g},"JU.BS,~B,~B,JU.Lst");j(c$,"setMarBond",function(a){this.g.bondRadiusMilliAngstroms=a;this.g.setI("bondRadiusMilliAngstroms",a);this.setShapeSize(1,2*a,JU.BSUtil.setAll(this.ms.ac))},"~N");c(c$,"setHoverLabel",function(a){this.shm.loadShape(35);this.setShapeProperty(35,"label",a);this.hoverEnabled=null!=a;!this.hoverEnabled&&!this.sm.haveHoverCallback()&&this.startHoverWatcher(!1)},"~S");c(c$,"hoverOn",function(a,b){this.g.removeParam("_objecthovered");
this.g.setI("_atomhovered",a);this.g.setUserVariable("hovered",JS.SV.getVariable(JU.BSUtil.newAndSetBit(a)));this.sm.haveHoverCallback()&&this.sm.setStatusAtomHovered(a,this.getAtomInfoXYZ(a,!1));if(this.hoverEnabled)if(this.g.modelKitMode)this.ms.isAtomAssignable(a)&&this.highlight(JU.BSUtil.newAndSetBit(a)),this.refresh(3,"hover on atom");else if(!(null!=this.eval&&this.isScriptExecuting()||a==this.hoverAtomIndex||0==this.g.hoverDelayMs)&&this.slm.isInSelectionSubset(a))this.shm.loadShape(35),b&&
this.ms.at[a].isVisible(512)&&this.setShapeProperty(35,"specialLabel",J.i18n.GT._("Drag to move label")),this.setShapeProperty(35,"text",null),this.setShapeProperty(35,"target",Integer.$valueOf(a)),this.hoverText=null,this.hoverAtomIndex=a,this.refresh(3,"hover on atom")},"~N,~B");c(c$,"hoverOnPt",function(a,b,c,f,g){null!=this.eval&&this.isScriptExecuting()||(null!=f&&null!=g&&(this.g.setO("_objecthovered",f),this.g.setI("_atomhovered",-1),this.g.setUserVariable("hovered",JS.SV.getVariable(g)),this.sm.haveHoverCallback()&&
this.sm.setStatusObjectHovered(f,c,g)),this.hoverEnabled&&(this.shm.loadShape(35),this.setShapeProperty(35,"xy",JU.P3i.new3(a,b,0)),this.setShapeProperty(35,"target",null),this.setShapeProperty(35,"specialLabel",null),this.setShapeProperty(35,"text",c),this.hoverAtomIndex=-1,this.hoverText=c,this.refresh(3,"hover on point")))},"~N,~N,~S,~S,JU.T3");c(c$,"hoverOff",function(){try{if(this.g.modelKitMode&&this.highlight(null),this.hoverEnabled){var a=null!=this.hoverText||0<=this.hoverAtomIndex;0<=this.hoverAtomIndex&&
(this.setShapeProperty(35,"target",null),this.hoverAtomIndex=-1);null!=this.hoverText&&(this.setShapeProperty(35,"text",null),this.hoverText=null);this.setShapeProperty(35,"specialLabel",null);a&&this.refresh(3,"hover off")}}catch(b){if(!B(b,Exception))throw b;}});j(c$,"setDebugScript",function(a){this.g.debugScript=a;this.g.setB("debugScript",a);null!=this.eval&&this.eval.setDebugging()},"~B");c(c$,"clearClickCount",function(){this.setTainted(!0)});c(c$,"setCursor",function(a){if(!this.$isKiosk&&
!(this.currentCursor==a||this.multiTouch||!this.haveDisplay))this.apiPlatform.setCursor(this.currentCursor=a,this.display)},"~N");c(c$,"setPickingMode",function(a,b){if(this.haveDisplay){this.showSelected=!1;var c=null;if(null!=a){var f=a.indexOf("_");0<=f&&(c=a.substring(f+1),a=a.substring(0,f));b=JV.ActionManager.getPickingMode(a)}0>b&&(b=1);this.acm.setPickingMode(b);this.g.setO("picking",JV.ActionManager.getPickingModeName(this.acm.getAtomPickingMode()));if(!(null==c||0==c.length))switch(c=Character.toUpperCase(c.charAt(0))+
(1==c.length?"":c.substring(1,2)),b){case 32:this.setAtomPickingOption(c);break;case 33:this.setBondPickingOption(c);break;default:JU.Logger.error("Bad picking mode: "+a+"_"+c)}}},"~S,~N");c(c$,"getPickingMode",function(){return this.haveDisplay?this.acm.getAtomPickingMode():0});c(c$,"setPickingStyle",function(a,b){this.haveDisplay&&(null!=a&&(b=JV.ActionManager.getPickingStyleIndex(a)),0>b&&(b=0),this.acm.setPickingStyle(b),this.g.setO("pickingStyle",JV.ActionManager.getPickingStyleName(this.acm.getPickingStyle())))},
"~S,~N");c(c$,"getDrawHover",function(){return this.haveDisplay&&this.g.drawHover});c(c$,"getAtomInfo",function(a){null==this.ptTemp&&(this.ptTemp=new JU.P3);return 0<=a?this.ms.getAtomInfo(a,null,this.ptTemp):this.shm.getShapePropertyIndex(6,"pointInfo",-a)},"~N");c(c$,"getAtomInfoXYZ",function(a,b){null==this.ptTemp&&(this.ptTemp=new JU.P3);return this.ms.at[a].getInfoXYZ(!this.g.legacyJavaFloat,b,this.ptTemp)},"~N,~B");c(c$,"setSync",function(){this.sm.doSync()&&this.sm.setSync(null)});j(c$,"setJmolCallbackListener",
function(a){this.sm.setJmolCallbackListener(a)},"J.api.JmolCallbackListener");j(c$,"setJmolStatusListener",function(a){this.sm.setJmolStatusListener(a,null)},"J.api.JmolStatusListener");c(c$,"getStatusChanged",function(a){return null==a?null:this.sm.getStatusChanged(a)},"~S");c(c$,"menuEnabled",function(){return!this.g.disablePopupMenu&&null!=this.getPopupMenu()});c(c$,"popupMenu",function(a,b,c){if(this.haveDisplay&&this.refreshing&&!this.isPreviewOnly&&!this.g.disablePopupMenu)switch(c){case "j":try{this.getPopupMenu(),
this.jmolpopup.jpiShow(a,b)}catch(f){JU.Logger.info(f.toString()),this.g.disablePopupMenu=!0}break;case "a":case "b":case "m":if(null==this.modelkitPopup&&null==(this.modelkitPopup=this.apiPlatform.getMenuPopup(null,c)))break;this.modelkitPopup.jpiShow(a,b)}},"~N,~N,~S");c(c$,"getMenu",function(a){this.getPopupMenu();return a.equals("\x00")?(this.popupMenu(this.dimScreen.width-120,0,"j"),"OK"):null==this.jmolpopup?"":this.jmolpopup.jpiGetMenuAsString("Jmol version "+JV.Viewer.getJmolVersion()+"|_GET_MENU|"+
a)},"~S");c(c$,"getPopupMenu",function(){return this.g.disablePopupMenu?null:null==this.jmolpopup&&(this.jmolpopup=this.allowScripting?this.apiPlatform.getMenuPopup(this.menuStructure,"j"):null,null==this.jmolpopup&&!this.async)?(this.g.disablePopupMenu=!0,null):this.jmolpopup.jpiGetMenuAsObject()});j(c$,"setMenu",function(a,b){b&&JU.Logger.info("Setting menu "+(0==a.length?"to Jmol defaults":"from file "+a));0==a.length?a=null:b&&(a=this.getFileAsString3(a,!1,null));this.getProperty("DATA_API","setMenu",
a);this.sm.setCallbackFunction("menu",a)},"~S,~B");c(c$,"setStatusFrameChanged",function(a){a&&(this.prevFrame=-2147483648);this.tm.setVibrationPeriod(NaN);var b=this.am.firstFrameIndex,c=this.am.lastFrameIndex,f=this.am.isMovie;a=this.am.cmi;b==c&&!f&&(a=b);var g=this.getModelFileNumber(a),e=this.am.cmi,h=g,j=g%1E6,k=f?b:this.getModelFileNumber(b),n=f?c:this.getModelFileNumber(c),m;f?m=""+(e+1):0==h?(m=this.getModelNumberDotted(b),b!=c&&(m+=" - "+this.getModelNumberDotted(c)),x(k/1E6)==x(n/1E6)&&
(h=k)):m=this.getModelNumberDotted(a);0!=h&&(h=1E6>h?1:x(h/1E6));f||(this.g.setI("_currentFileNumber",h),this.g.setI("_currentModelNumberInFile",j));b=this.am.currentMorphModel;this.g.setI("_currentFrame",e);this.g.setI("_morphCount",this.am.morphCount);this.g.setF("_currentMorphFrame",b);this.g.setI("_frameID",g);this.g.setO("_modelNumber",m);this.g.setO("_modelName",0>a?"":this.getModelName(a));g=0>a?"":this.ms.getModelTitle(a);this.g.setO("_modelTitle",null==g?"":g);this.g.setO("_modelFile",0>
a?"":this.ms.getModelFileName(a));this.g.setO("_modelType",0>a?"":this.ms.getModelFileType(a));e==this.prevFrame&&b==this.prevMorphModel||(this.prevFrame=e,this.prevMorphModel=b,f?f=""+(e+1):(f=this.getModelName(e),g=""+this.getModelNumberDotted(e),f.equals(g)||(f=g+": "+f),50<f.length&&(f=f.substring(0,45)+"...")),this.sm.setStatusFrameChanged(h,j,0>this.am.animationDirection?-k:k,0>this.am.currentDirection?-n:n,e,b,f),this.doHaveJDX()&&this.getJSV().setModel(a),this.isJS&&this.updateJSView(a,-1))},
"~B,~B");c(c$,"doHaveJDX",function(){return this.haveJDX||(this.haveJDX=this.getBooleanProperty("_jspecview"))});c(c$,"getJSV",function(){null==this.jsv&&(this.jsv=J.api.Interface.getOption("jsv.JSpecView",this,"script"),this.jsv.setViewer(this));return this.jsv});c(c$,"getJDXBaseModelIndex",function(a){return!this.doHaveJDX()?a:this.getJSV().getBaseModelIndex(a)},"~N");c(c$,"getJspecViewProperties",function(a){a=this.sm.getJspecViewProperties(""+a);null!=a&&(this.haveJDX=!0);return a},"~O");c(c$,
"scriptEcho",function(a){JU.Logger.isActiveLevel(4)&&(System.out.println(a),this.sm.setScriptEcho(a,this.isScriptQueued()),this.listCommands&&(null!=a&&0==a.indexOf("$["))&&JU.Logger.info(a))},"~S");c(c$,"isScriptQueued",function(){return null!=this.scm&&this.scm.isScriptQueued()});c(c$,"notifyError",function(a,b,c){this.g.setO("_errormessage",c);this.sm.notifyError(a,b,c)},"~S,~S,~S");c(c$,"jsEval",function(a){return this.sm.jsEval(a)},"~S");c(c$,"setFileLoadStatus",function(a,b,c,f,g,e){this.setErrorMessage(g,
null);this.g.setI("_loadPoint",a.getCode());var h=a!==J.c.FIL.CREATING_MODELSET;h&&this.setStatusFrameChanged(!1,!1);this.sm.setFileLoadStatus(b,c,f,g,a.getCode(),h,e);h&&(this.doHaveJDX()&&this.getJSV().setModel(this.am.cmi),this.isJS&&this.updateJSView(this.am.cmi,-2))},"J.c.FIL,~S,~S,~S,~S,Boolean");c(c$,"getZapName",function(){return this.g.modelKitMode?"Jmol Model Kit":"zapped"});c(c$,"setStatusMeasuring",function(a,b,c,f){this.sm.setStatusMeasuring(a,b,c,f)},"~S,~N,~S,~N");c(c$,"notifyMinimizationStatus",
function(){var a=this.getP("_minimizationStep"),b=this.getP("_minimizationForceField");this.sm.notifyMinimizationStatus(this.getP("_minimizationStatus"),q(a,String)?Integer.$valueOf(0):a,this.getP("_minimizationEnergy"),a.toString().equals("0")?Float.$valueOf(0):this.getP("_minimizationEnergyDiff"),b)});c(c$,"setStatusAtomPicked",function(a,b,c){null==b&&(b=this.g.pickLabel,b=0==b.length?this.getAtomInfoXYZ(a,this.g.messageStyleChime):this.ms.getAtomInfo(a,b,this.ptTemp));this.setPicked(a);this.g.setO("_pickinfo",
b);this.sm.setStatusAtomPicked(a,b,c);0>a||(1==this.sm.getSyncMode()&&this.doHaveJDX()&&this.getJSV().atomPicked(a),this.isJS&&this.updateJSView(this.ms.at[a].mi,a))},"~N,~S,java.util.Map");c(c$,"setStatusDragDropped",function(a,b,c,f){0==a&&(this.g.setO("_fileDropped",f),this.g.setUserVariable("doDrop",JS.SV.vT));return!this.sm.setStatusDragDropped(a,b,c,f)||this.getP("doDrop").toString().equals("true")},"~N,~N,~N,~S");c(c$,"setStatusResized",function(a,b){this.sm.setStatusResized(a,b)},"~N,~N");
c(c$,"scriptStatus",function(a){this.setScriptStatus(a,"",0,null)},"~S");c(c$,"scriptStatusMsg",function(a,b){this.setScriptStatus(a,b,0,null)},"~S,~S");c(c$,"setScriptStatus",function(a,b,c,f){this.sm.setScriptStatus(a,b,c,f)},"~S,~S,~N,~S");c(c$,"dialogAsk",function(a,b){return prompt(a,b)},"~S,~S");j(c$,"showUrl",function(a){if(null!=a){if(0>a.indexOf(":")){var b=this.fm.getAppletDocumentBase();""===b&&(b=this.fm.getFullPathName(!1));0<=b.indexOf("/")?b=b.substring(0,b.lastIndexOf("/")+1):0<=b.indexOf("\\")&&
(b=b.substring(0,b.lastIndexOf("\\")+1));a=b+a}JU.Logger.info("showUrl:"+a);this.sm.showUrl(a)}},"~S");c(c$,"setMeshCreator",function(a){this.shm.loadShape(24);this.setShapeProperty(24,"meshCreator",a)},"~O");c(c$,"showConsole",function(a){if(this.haveDisplay)try{null==this.appConsole&&a&&this.getProperty("DATA_API","getAppConsole",Boolean.TRUE),this.appConsole.setVisible(!0)}catch(b){}},"~B");j(c$,"getParameter",function(a){return this.getP(a)},"~S");c(c$,"getP",function(a){return this.g.getParameter(a,
!0)},"~S");c(c$,"getPOrNull",function(a){return this.g.getParameter(a,!1)},"~S");c(c$,"unsetProperty",function(a){a=a.toLowerCase();(a.equals("all")||a.equals("variables"))&&this.fm.setPathForAllFiles("");this.g.unsetUserVariable(a)},"~S");j(c$,"notifyStatusReady",function(a){System.out.println("Jmol applet "+this.fullName+(a?" ready":" destroyed"));a||this.dispose();this.sm.setStatusAppletReady(this.fullName,a)},"~B");j(c$,"getBooleanProperty",function(a){a=a.toLowerCase();if(this.g.htBooleanParameterFlags.containsKey(a))return this.g.htBooleanParameterFlags.get(a).booleanValue();
if(a.endsWith("p!")){if(null==this.acm)return!1;var b=this.acm.getPickingState().toLowerCase();a=a.substring(0,a.length-2)+";";return 0<=b.indexOf(a)}if(a.equalsIgnoreCase("executionPaused"))return null!=this.eval&&this.eval.isPaused();if(a.equalsIgnoreCase("executionStepping"))return null!=this.eval&&this.eval.isStepping();if(a.equalsIgnoreCase("haveBFactors"))return null!=this.ms.getBFactors();if(a.equalsIgnoreCase("colorRasmol"))return this.cm.isDefaultColorRasmol;if(a.equalsIgnoreCase("frank"))return this.getShowFrank();
if(a.equalsIgnoreCase("spinOn"))return this.tm.spinOn;if(a.equalsIgnoreCase("isNavigating"))return this.tm.isNavigating();if(a.equalsIgnoreCase("showSelections"))return this.ms.getSelectionHaloEnabled();if(this.g.htUserVariables.containsKey(a)){b=this.g.getUserVariable(a);if(1048589==b.tok)return!0;if(1048588==b.tok)return!1}JU.Logger.error("vwr.getBooleanProperty("+a+") - unrecognized");return!1},"~S");j(c$,"getInt",function(a){switch(a){case 553648132:return this.am.animationFps;case 553648143:return this.g.dotDensity;
case 553648144:return this.g.dotScale;case 553648146:return this.g.helixStep;case 553648151:return this.g.meshScale;case 553648153:return this.g.minPixelSelRadius;case 553648154:return this.g.percentVdwAtom;case 553648157:return this.g.pickingSpinRate;case 553648166:return this.g.ribbonAspectRatio;case 536870922:return this.g.scriptDelay;case 553648170:return this.g.smallMoleculeMaxAtoms;case 553648184:return this.g.strutSpacing}JU.Logger.error("viewer.getInt("+JS.T.nameOf(a)+") - not listed");return 0},
"~N");c(c$,"getDelayMaximumMs",function(){return this.haveDisplay?this.g.delayMaximumMs:1});c(c$,"getHermiteLevel",function(){return this.tm.spinOn?0:this.g.hermiteLevel});c(c$,"getHoverDelay",function(){return this.g.modelKitMode?20:this.g.hoverDelayMs});j(c$,"getBoolean",function(a){switch(a){case 1074790662:return this.ms.getMSInfoB("isPDB");case 603979780:return this.g.allowGestures;case 603979784:return this.g.allowMultiTouch;case 603979785:return this.g.allowRotateSelected;case 603979792:return this.g.appendNew;
case 603979794:return this.g.applySymmetryToBonds;case 603979796:return this.g.atomPicking;case 603979798:return this.g.autoBond;case 603979800:return this.g.autoFps;case 603979806:return this.g.axesOrientationRasmol;case 603979811:return this.g.backboneSteps;case 603979812:return this.g.bondModeOr;case 603979816:return this.g.cartoonBaseEdges;case 603979817:return this.g.cartoonFancy;case 603979818:return this.g.cartoonLadders;case 603979819:return this.g.cartoonRibose;case 603979820:return this.g.cartoonRockets;
case 603979823:return this.g.chainCaseSensitive||0<this.chainList.size();case 603979825:return this.g.debugScript;case 603979826:return this.g.defaultStructureDSSP;case 603979827:return this.g.disablePopupMenu;case 603979828:return this.g.displayCellParameters;case 603979830:return this.g.dotSurface;case 603979829:return this.g.dotsSelectedOnly;case 603979833:return this.g.drawPicking;case 603979844:return this.g.fontCaching;case 603979845:return this.g.fontScaling;case 603979846:return this.g.forceAutoBond;
case 603979848:return!1;case 603979850:return this.g.greyscaleRendering;case 603979852:return this.g.hbondsBackbone;case 603979853:return this.g.hbondsRasmol;case 603979854:return this.g.hbondsSolid;case 1613758470:return this.g.rasmolHeteroSetting;case 603979858:return this.g.hideNameInPopup;case 603979864:return this.g.highResolutionFlag;case 1613758476:return this.g.rasmolHydrogenSetting;case 603979869:return this.g.isosurfaceKey;case 603979871:return this.g.justifyMeasurements;case 603979873:return this.g.legacyAutoBonding;
case 603979874:return this.g.legacyHAddition;case 603979875:return this.g.legacyJavaFloat;case 603979877:return this.g.logGestures;case 603979878:return this.g.measureAllModels;case 603979879:return this.g.measurementLabels;case 603979880:return this.g.messageStyleChime;case 603979883:return this.g.modelKitMode;case 603979887:return this.g.navigationMode;case 603979888:return this.g.navigationPeriodic;case 603979889:return this.g.partialDots;case 603979892:return this.g.pdbSequential;case 603979894:return this.g.preserveState;
case 603979898:return this.g.ribbonBorder;case 603979900:return this.g.rocketBarrels;case 603979906:return this.g.selectAllModels;case 603979920:return this.g.showHiddenSelectionHalos;case 603979922:return this.g.showHydrogens;case 603979926:return this.g.showMeasurements;case 603979927:return this.g.showModVecs;case 603979928:return this.g.showMultipleBonds;case 603979934:return this.g.showTiming;case 603979937:return this.g.showUnitCellDetails;case 603979939:return this.g.slabByAtom;case 603979940:return this.g.slabByMolecule;
case 603979944:return this.g.smartAromatic;case 1613758488:return this.g.solventOn;case 603979952:return this.g.ssbondsBackbone;case 603979955:return this.g.strutsMultiple;case 603979966:return this.g.traceAlpha;case 603979967:return this.g.translucent;case 603979968:return this.g.twistedSheets;case 603979972:return this.g.vectorsCentered;case 603979973:return this.g.vectorSymmetry;case 603979974:return this.g.waitForMoveTo;case 603979978:return this.g.zeroBasedXyzRasmol}JU.Logger.error("viewer.getBoolean("+
JS.T.nameOf(a)+") - not listed");return!1},"~N");c(c$,"allowEmbeddedScripts",function(){return this.g.allowEmbeddedScripts&&!this.isPreviewOnly});c(c$,"getDragSelected",function(){return this.g.dragSelected&&!this.g.modelKitMode});c(c$,"getBondPicking",function(){return this.g.bondPicking||this.g.modelKitMode});c(c$,"useMinimizationThread",function(){return this.g.useMinimizationThread&&!this.autoExit});j(c$,"getFloat",function(a){switch(a){case 1141899265:return this.g.particleRadius;case 570425346:return this.g.axesScale;
case 570425348:return this.g.bondTolerance;case 570425354:return this.g.defaultTranslucent;case 570425352:return this.g.defaultDrawArrowScale;case 570425355:return this.g.dipoleScale;case 570425356:return this.g.drawFontSize;case 570425358:return this.g.exportScale;case 570425360:return this.g.hbondsAngleMinimum;case 570425361:return this.g.hbondsDistanceMaximum;case 570425363:return this.g.loadAtomDataTolerance;case 570425364:return this.g.minBondDistance;case 1276121113:return this.g.modulationScale;
case 570425370:return this.g.multipleBondSpacing;case 570425369:return this.g.multipleBondRadiusFactor;case 570425374:return this.g.navigationSpeed;case 570425382:return this.g.pointGroupDistanceTolerance;case 570425384:return this.g.pointGroupLinearTolerance;case 570425388:return this.tm.modelRadius;case 570425392:return this.g.sheetSmoothing;case 570425394:return this.g.solventProbeRadius;case 570425403:return this.g.starWidth;case 570425406:return this.g.strutDefaultRadius;case 570425408:return this.g.strutLengthMaximum;
case 1649410049:return this.g.vectorScale;case 570425412:return this.g.vibrationPeriod}JU.Logger.error("viewer.getFloat("+JS.T.nameOf(a)+") - not listed");return 0},"~N");j(c$,"setStringProperty",function(a,b){if(null!=b)if("_"==a.charAt(0))this.g.setO(a,b);else{var c=JS.T.getTokFromName(a);switch(JS.T.getParamType(c)){case 603979776:this.setBooleanPropertyTok(a,c,JS.SV.newV(4,b).asBoolean());break;case 553648128:this.setIntPropertyTok(a,c,JS.SV.newV(4,b).asInt());break;case 570425344:this.setFloatPropertyTok(a,
c,JU.PT.parseFloat(b));break;default:this.setStringPropertyTok(a,c,b)}}},"~S,~S");c(c$,"setStringPropertyTok",function(a,b,c){switch(b){case 545259556:this.g.edsUrlCutoff=c;break;case 545259557:this.g.edsUrlFormat=c;break;case 545259558:this.g.edsUrlFormatDiff=c;break;case 545259521:this.setAnimationMode(c);return;case 545259569:this.g.nmrPredictFormat=c;break;case 545259548:this.g.defaultDropScript=c;break;case 545259571:c=this.fm.setPathForAllFiles(c);break;case 545259559:this.setUnits(c,!1);return;
case 545259561:this.g.forceField=c="UFF".equalsIgnoreCase(c)?"UFF":"MMFF";this.minimizer=null;break;case 545259570:this.g.nmrUrlFormat=c;break;case 545259568:this.setUnits(c,!0);return;case 545259566:this.g.loadLigandFormat=c;break;case 545259543:this.g.defaultLabelPDB=c;break;case 545259544:this.g.defaultLabelXYZ=c;break;case 545259549:this.g.defaultLoadFilter=c;break;case 545259567:c=this.getOutputManager().setLogFile(c);if(null==c)return;break;case 545259560:break;case 545259524:this.g.atomTypes=
c;break;case 545259538:break;case 545259576:this.g.pickLabel=c;break;case 545259580:this.g.quaternionFrame=2==c.length&&c.startsWith("R")?c.substring(0,2):""+(c.toLowerCase()+"p").charAt(0);JU.PT.isOneOf(this.g.quaternionFrame,"RC;RP;a;b;c;n;p;q;x;")||(this.g.quaternionFrame="p");this.ms.haveStraightness=!1;break;case 545259555:this.setVdwStr(c);return;case 545259564:new J.i18n.GT(this,c);b=J.i18n.GT.getLanguage();this.modelkitPopup=null;null!=this.jmolpopup&&(this.jmolpopup.jpiDispose(),this.jmolpopup=
null,this.getPopupMenu());this.sm.setCallbackFunction("language",b);c=J.i18n.GT.getLanguage();break;case 545259565:this.g.loadFormat=c;break;case 545259534:this.setObjectColor("background",c);return;case 545259528:this.setObjectColor("axis1",c);return;case 545259530:this.setObjectColor("axis2",c);return;case 545259532:this.setObjectColor("axis3",c);return;case 545259536:this.setObjectColor("boundbox",c);return;case 545259586:this.setObjectColor("unitcell",c);return;case 545259578:this.setPropertyColorScheme(c,
!1,!1);break;case 545259563:this.shm.loadShape(35);this.setShapeProperty(35,"atomLabel",c);break;case 545259547:this.g.defaultDistanceLabel=c;break;case 545259542:this.g.defaultAngleLabel=c;break;case 545259554:this.g.defaultTorsionLabel=c;break;case 545259550:this.g.defaultLoadScript=c;break;case 545259522:this.fm.setAppletProxy(c);break;case 545259546:null==c&&(c="");c=c.$replace("\\","/");this.g.defaultDirectory=c;break;case 545259562:this.g.helpPath=c;break;case 545259552:!c.equalsIgnoreCase("RasMol")&&
!c.equalsIgnoreCase("PyMOL")&&(c="Jmol");this.setDefaultsType(c);break;case 545259545:this.setDefaultColors(c.equalsIgnoreCase("rasmol"));return;case 545259572:this.setPickingMode(c,0);return;case 545259574:this.setPickingStyle(c,0);return;case 545259540:break;default:if(a.toLowerCase().endsWith("callback")){this.sm.setCallbackFunction(a,0==c.length||c.equalsIgnoreCase("none")?null:c);break}if(!this.g.htNonbooleanParameterValues.containsKey(a.toLowerCase())){this.g.setUserVariable(a,JS.SV.newV(4,
c));return}}this.g.setO(a,c)},"~S,~N,~S");j(c$,"setFloatProperty",function(a,b){if(!Float.isNaN(b))if("_"==a.charAt(0))this.g.setF(a,b);else{var c=JS.T.getTokFromName(a);switch(JS.T.getParamType(c)){case 545259520:this.setStringPropertyTok(a,c,""+b);break;case 603979776:this.setBooleanPropertyTok(a,c,0!=b);break;case 553648128:this.setIntPropertyTok(a,c,z(b));break;default:this.setFloatPropertyTok(a,c,b)}}},"~S,~N");c(c$,"setFloatPropertyTok",function(a,b,c){switch(b){case 570425366:this.ms.setModulation(null,
!1,null,!1);this.g.modulationScale=c=Math.max(0.1,c);this.ms.setModulation(null,!0,null,!1);break;case 570425381:this.g.particleRadius=Math.abs(c);break;case 570425356:this.g.drawFontSize=c;break;case 570425358:this.g.exportScale=c;break;case 570425403:this.g.starWidth=c;break;case 570425369:this.g.multipleBondRadiusFactor=c;break;case 570425370:this.g.multipleBondSpacing=c;break;case 570425393:this.tm.setSlabRange(c);break;case 570425365:this.g.minimizationCriterion=c;break;case 570425359:this.haveDisplay&&
this.acm.setGestureSwipeFactor(c);break;case 570425367:this.haveDisplay&&this.acm.setMouseDragFactor(c);break;case 570425368:this.haveDisplay&&this.acm.setMouseWheelFactor(c);break;case 570425408:this.g.strutLengthMaximum=c;break;case 570425406:this.g.strutDefaultRadius=c;break;case 570425376:this.setSpin("X",z(c));break;case 570425378:this.setSpin("Y",z(c));break;case 570425380:this.setSpin("Z",z(c));break;case 570425371:if(Float.isNaN(c))return;this.setSpin("FPS",z(c));break;case 570425363:this.g.loadAtomDataTolerance=
c;break;case 570425360:this.g.hbondsAngleMinimum=c;break;case 570425361:this.g.hbondsDistanceMaximum=c;break;case 570425382:this.g.pointGroupDistanceTolerance=c;break;case 570425384:this.g.pointGroupLinearTolerance=c;break;case 570425357:this.g.ellipsoidAxisDiameter=c;break;case 570425398:this.setSpin("x",z(c));break;case 570425400:this.setSpin("y",z(c));break;case 570425402:this.setSpin("z",z(c));break;case 570425396:this.setSpin("fps",z(c));break;case 570425352:this.g.defaultDrawArrowScale=c;break;
case 570425354:this.g.defaultTranslucent=c;break;case 570425346:this.setAxesScale(c);break;case 570425416:this.tm.visualRangeAngstroms=c;this.refresh(1,"set visualRange");break;case 570425372:this.setNavigationDepthPercent(c);break;case 570425374:this.g.navigationSpeed=c;break;case 570425373:this.tm.setNavigationSlabOffsetPercent(c);break;case 570425350:this.tm.setCameraDepthPercent(c,!1);this.refresh(1,"set cameraDepth");return;case 570425388:this.setRotationRadius(c,!0);return;case 570425362:this.g.hoverDelayMs=
z(1E3*c);break;case 570425392:this.g.sheetSmoothing=c;break;case 570425355:c=JV.Viewer.checkFloatRange(c,-10,10);this.g.dipoleScale=c;break;case 570425404:this.tm.setStereoDegrees(c);break;case 1649410049:this.setVectorScale(c);return;case 570425412:this.setVibrationPeriod(c);return;case 570425414:this.setVibrationScale(c);return;case 570425348:this.setBondTolerance(c);return;case 570425364:this.setMinBondDistance(c);return;case 570425390:this.tm.setScaleAngstromsPerInch(c);break;case 570425394:c=
JV.Viewer.checkFloatRange(c,0,10);this.g.solventProbeRadius=c;break;default:if(!this.g.htNonbooleanParameterValues.containsKey(a.toLowerCase())){this.g.setUserVariable(a,JS.SV.newV(3,Float.$valueOf(c)));return}}this.g.setF(a,c)},"~S,~N,~N");j(c$,"setIntProperty",function(a,b){if(-2147483648!=b)if("_"==a.charAt(0))this.g.setI(a,b);else{var c=JS.T.getTokFromName(a);switch(JS.T.getParamType(c)){case 545259520:this.setStringPropertyTok(a,c,""+b);break;case 603979776:this.setBooleanPropertyTok(a,c,0!=
b);break;case 570425344:this.setFloatPropertyTok(a,c,b);break;default:this.setIntPropertyTok(a,c,b)}}},"~S,~N");c(c$,"setIntPropertyTok",function(a,b,c){switch(b){case 553648138:c=0==c?0:1;this.g.bondingVersion=JU.Elements.bondingVersion=c;break;case 553648137:this.gdata.setCelPower(c);break;case 553648129:this.gdata.setAmbientOcclusion(c);break;case 553648158:this.g.platformSpeed=Math.min(Math.max(c,0),10);break;case 553648151:this.g.meshScale=c;break;case 553648153:this.g.minPixelSelRadius=c;break;
case 553648149:this.g.isosurfacePropertySmoothingPower=c;break;case 553648165:this.g.repaintWaitMs=c;break;case 553648170:this.g.smallMoleculeMaxAtoms=c;break;case 553648152:this.g.minimizationSteps=c;break;case 553648184:this.g.strutSpacing=c;break;case 553648156:c=JV.Viewer.checkIntRange(c,0,1E3);this.gdata.setPhongExponent(c);break;case 553648146:this.g.helixStep=c;this.ms.haveStraightness=!1;break;case 553648144:this.g.dotScale=c;break;case 553648143:this.g.dotDensity=c;break;case 553648140:this.g.delayMaximumMs=
c;break;case 553648150:JU.Logger.setLogLevel(c);JU.Logger.info("logging level set to "+c);this.g.setI("logLevel",c);null!=this.eval&&this.eval.setDebugging();return;case 553648134:this.setAxesMode(2==c?603979808:1==c?603979804:603979810);return;case 553648178:this.setStrandCount(0,c);return;case 553648182:this.setStrandCount(12,c);return;case 553648180:this.setStrandCount(13,c);return;case 553648155:return;case 536870922:this.g.scriptDelay=c;break;case 553648176:c=0>c?JV.Viewer.checkIntRange(c,-10,
-1):JV.Viewer.checkIntRange(c,0,100);this.gdata.setSpecularPower(c);break;case 553648172:c=JV.Viewer.checkIntRange(-c,-10,-1);this.gdata.setSpecularPower(c);break;case 553648136:this.setMarBond(c);return;case 536870924:this.setBooleanPropertyTok(a,b,1==c);return;case 553648174:c=JV.Viewer.checkIntRange(c,0,100);this.gdata.setSpecularPercent(c);break;case 553648142:c=JV.Viewer.checkIntRange(c,0,100);this.gdata.setDiffusePercent(c);break;case 553648130:c=JV.Viewer.checkIntRange(c,0,100);this.gdata.setAmbientPercent(c);
break;case 553648186:this.tm.zDepthToPercent(c);break;case 553648188:this.tm.zSlabToPercent(c);break;case 554176526:this.tm.depthToPercent(c);break;case 554176565:this.tm.slabToPercent(c);break;case 553648190:this.g.zShadePower=Math.max(c,1);break;case 553648166:this.g.ribbonAspectRatio=c;break;case 553648157:this.g.pickingSpinRate=1>c?1:c;break;case 553648132:this.setAnimationFps(c);return;case 553648154:this.setPercentVdwAtom(c);break;case 553648147:this.g.hermiteLevel=c;break;case 553648145:case 553648148:case 553648160:case 553648159:case 553648162:case 553648164:break;
default:if(!this.g.htNonbooleanParameterValues.containsKey(a)){this.g.setUserVariable(a,JS.SV.newI(c));return}}this.g.setI(a,c)},"~S,~N,~N");c$.checkIntRange=c(c$,"checkIntRange",function(a,b,c){return a<b?b:a>c?c:a},"~N,~N,~N");c$.checkFloatRange=c(c$,"checkFloatRange",function(a,b,c){return a<b?b:a>c?c:a},"~N,~N,~N");j(c$,"setBooleanProperty",function(a,b){if("_"==a.charAt(0))this.g.setB(a,b);else{var c=JS.T.getTokFromName(a);switch(JS.T.getParamType(c)){case 545259520:this.setStringPropertyTok(a,
c,"");break;case 553648128:this.setIntPropertyTok(a,c,b?1:0);break;case 570425344:this.setFloatPropertyTok(a,c,b?1:0);break;default:this.setBooleanPropertyTok(a,c,b)}}},"~S,~B");c(c$,"setBooleanPropertyTok",function(a,b,c){var f=!0;switch(b){case 603979875:this.g.legacyJavaFloat=c;break;case 603979927:this.g.showModVecs=c;break;case 603979937:this.g.showUnitCellDetails=c;break;case 603979848:f=!1;break;case 603979972:this.g.vectorsCentered=c;break;case 603979811:this.g.backboneSteps=c;break;case 603979819:(this.g.cartoonRibose=
c)&&this.getBoolean(603979816)&&this.setBooleanPropertyTok("cartoonBaseEdges",603979816,!1);break;case 603979837:this.g.ellipsoidArrows=c;break;case 603979967:this.g.translucent=c;break;case 603979818:this.g.cartoonLadders=c;break;case 603979968:b=this.g.twistedSheets;this.g.twistedSheets=c;b!=c&&this.checkCoordinatesChanged();break;case 603979822:this.gdata.setCel(c);break;case 603979817:this.g.cartoonFancy=c;break;case 603979934:this.g.showTiming=c;break;case 603979973:this.g.vectorSymmetry=c;break;
case 603979869:this.g.isosurfaceKey=c;break;case 603979889:this.g.partialDots=c;break;case 603979873:this.g.legacyAutoBonding=c;break;case 603979826:this.g.defaultStructureDSSP=c;break;case 603979834:this.g.dsspCalcHydrogen=c;break;case 603979782:(this.g.allowModelkit=c)||this.setModelKitMode(!1);break;case 603979883:this.setModelKitMode(c);break;case 603979885:this.g.multiProcessor=c&&1<JV.Viewer.nProcessors;break;case 603979884:this.g.monitorEnergy=c;break;case 603979853:this.g.hbondsRasmol=c;break;
case 603979881:this.g.minimizationRefresh=c;break;case 603979882:this.g.minimizationSilent=c;break;case 603979868:c&&(this.$isKiosk=!0,this.g.disablePopupMenu=!0,null!=this.display&&this.apiPlatform.setTransparentCursor(this.display));break;case 603979974:this.g.waitForMoveTo=c;break;case 603979876:this.g.logCommands=!0;break;case 603979877:this.g.logGestures=!0;break;case 603979784:this.g.allowMultiTouch=c;break;case 603979894:this.g.preserveState=c;this.ms.setPreserveState(c);this.undoClear();break;
case 603979955:this.g.strutsMultiple=c;break;case 603979842:break;case 603979939:this.g.slabByAtom=c;break;case 603979940:this.g.slabByMolecule=c;break;case 603979902:this.g.saveProteinStructureState=c;break;case 603979780:this.g.allowGestures=c;break;case 603979867:this.g.imageState=c;break;case 603979970:this.g.useMinimizationThread=c;break;case 603979781:this.g.disablePopupMenu&&(c=!1);this.g.allowKeyStrokes=c;break;case 603979831:this.g.dragSelected=c;this.showSelected=!1;break;case 603979924:this.g.showKeyStrokes=
c;break;case 603979844:this.g.fontCaching=c;break;case 603979796:this.g.atomPicking=c;break;case 603979814:this.highlight(null);this.g.bondPicking=c;break;case 603979906:this.g.selectAllModels=c;break;case 603979880:this.g.messageStyleChime=c;break;case 603979892:this.g.pdbSequential=c;break;case 603979890:this.g.pdbAddHydrogens=c;break;case 603979891:this.g.pdbGetHeader=c;break;case 603979838:this.g.ellipsoidAxes=c;break;case 603979836:this.g.ellipsoidArcs=c;break;case 603979839:this.g.ellipsoidBall=
c;break;case 603979840:this.g.ellipsoidDots=c;break;case 603979841:this.g.ellipsoidFill=c;break;case 603979845:this.g.fontScaling=c;break;case 603979956:this.setSyncTarget(0,c);break;case 603979958:this.setSyncTarget(1,c);break;case 603979976:this.g.wireframeRotation=c;break;case 603979870:this.g.isosurfacePropertySmoothing=c;break;case 603979833:this.g.drawPicking=c;break;case 603979786:case 603979790:case 603979788:this.setAntialias(b,c);break;case 603979944:this.g.smartAromatic=c;break;case 603979794:this.setApplySymmetryToBonds(c);
break;case 603979792:this.g.appendNew=c;break;case 603979800:this.g.autoFps=c;break;case 603979971:JU.DF.setUseNumberLocalization(this.g.useNumberLocalization=c);break;case 603979918:case 1611272202:a="showFrank";this.setFrankOn(c);break;case 1613758488:a="solventProbe";this.g.solventOn=c;break;case 603979948:this.g.solventOn=c;break;case 603979785:this.g.allowRotateSelected=c;break;case 603979783:this.g.allowMoveAtoms=c;this.g.allowRotateSelected=c;this.g.dragSelected=c;this.showSelected=!1;break;
case 536870922:this.setIntPropertyTok("showScript",b,c?1:0);return;case 603979778:this.g.allowEmbeddedScripts=c;break;case 603979888:this.g.navigationPeriodic=c;break;case 603979984:this.tm.setZShadeEnabled(c);return;case 603979832:this.haveDisplay&&(this.g.drawHover=c);break;case 603979887:this.setNavigationMode(c);break;case 603979886:return;case 603979860:this.g.hideNavigationPoint=c;break;case 603979930:this.g.showNavigationPointAlways=c;break;case 603979896:this.setRefreshing(c);break;case 603979871:this.g.justifyMeasurements=
c;break;case 603979952:this.g.ssbondsBackbone=c;break;case 603979852:this.g.hbondsBackbone=c;break;case 603979854:this.g.hbondsSolid=c;break;case 536870924:this.gdata.setSpecular(c);break;case 603979942:this.tm.setSlabEnabled(c);return;case 603979980:this.tm.setZoomEnabled(c);return;case 603979864:this.g.highResolutionFlag=c;break;case 603979966:this.g.traceAlpha=c;break;case 603979983:this.g.zoomLarge=c;this.tm.setZoomHeight(this.g.zoomHeight,c);break;case 603979982:this.g.zoomHeight=c;this.tm.setZoomHeight(c,
this.g.zoomLarge);break;case 603979872:J.i18n.GT.setDoTranslate(c);break;case 603979862:this.slm.setHideNotSelected(c);break;case 603979904:this.setScriptQueue(c);break;case 603979830:this.g.dotSurface=c;break;case 603979829:this.g.dotsSelectedOnly=c;break;case 1611141171:this.setSelectionHalos(c);break;case 603979910:this.g.rasmolHydrogenSetting=c;break;case 603979908:this.g.rasmolHeteroSetting=c;break;case 603979928:this.g.showMultipleBonds=c;break;case 603979920:this.g.showHiddenSelectionHalos=
c;break;case 603979975:this.tm.setWindowCentered(c);break;case 603979828:this.g.displayCellParameters=c;break;case 603979960:this.g.testFlag1=c;break;case 603979962:this.g.testFlag2=c;break;case 603979964:this.g.testFlag3=c;break;case 603979965:this.jmolTest();this.g.testFlag4=c;break;case 603979898:this.g.ribbonBorder=c;break;case 603979816:(this.g.cartoonBaseEdges=c)&&this.getBoolean(603979819)&&this.setBooleanPropertyTok("cartoonRibose",603979819,!1);break;case 603979820:this.g.cartoonRockets=
c;break;case 603979900:this.g.rocketBarrels=c;break;case 603979850:this.gdata.setGreyscaleMode(this.g.greyscaleRendering=c);break;case 603979879:this.g.measurementLabels=c;break;case 603979810:case 603979804:case 603979808:this.setAxesMode(b);return;case 603979806:this.setAxesOrientationRasmol(c);return;case 603979824:this.setStringPropertyTok("defaultcolorscheme",545259545,c?"rasmol":"jmol");return;case 603979825:this.setDebugScript(c);return;case 603979893:this.setPerspectiveDepth(c);return;case 603979798:this.setAutoBond(c);
return;case 603979914:this.setShowAxes(c);return;case 603979916:this.setShowBbcage(c);return;case 603979922:this.setShowHydrogens(c);return;case 603979926:this.setShowMeasurements(c);return;case 603979936:this.setShowUnitCell(c);return;case 603979812:f=!1;this.g.bondModeOr=c;break;case 603979978:f=!1;this.g.zeroBasedXyzRasmol=c;this.reset(!0);break;case 603979895:f=!1;this.g.rangeSelected=c;break;case 603979878:f=!1;this.g.measureAllModels=c;break;case 603979954:f=!1;this.sm.allowStatusReporting=
c;break;case 603979823:f=!1;this.g.chainCaseSensitive=c;break;case 603979858:f=!1;this.g.hideNameInPopup=c;break;case 603979827:f=!1;this.g.disablePopupMenu=c;break;case 603979846:f=!1;this.g.forceAutoBond=c;break;default:if(!this.g.htBooleanParameterFlags.containsKey(a.toLowerCase())){this.g.setUserVariable(a,JS.SV.getBoolean(c));return}}this.g.setB(a,c);f&&this.setTainted(!0)},"~S,~N,~B");c(c$,"setModelKitMode",function(a){if(null!=this.acm&&this.allowScripting){if(a||this.g.modelKitMode)this.setPickingMode(null,
a?33:1),this.setPickingMode(null,a?32:1);var b=this.g.modelKitMode!=a;this.g.modelKitMode=a;this.highlight(null);a?(this.setNavigationMode(!1),this.selectAll(),this.setAtomPickingOption("C"),this.setBondPickingOption("p"),this.isApplet||this.popupMenu(0,0,"m"),b&&this.sm.setCallbackFunction("modelkit","ON"),this.g.modelKitMode=!0,0==this.ms.ac&&this.zap(!1,!0,!0)):(this.acm.setPickingMode(-1),this.setStringProperty("pickingStyle","toggle"),this.setBooleanProperty("bondPicking",!1),b&&this.sm.setCallbackFunction("modelkit",
"OFF"))}},"~B");c(c$,"setSmilesString",function(a){null==a?this.g.removeParam("_smilesString"):this.g.setO("_smilesString",a)},"~S");c(c$,"removeUserVariable",function(a){this.g.removeUserVariable(a);a.endsWith("callback")&&this.sm.setCallbackFunction(a,null)},"~S");c(c$,"jmolTest",function(){});c(c$,"showParameter",function(a,b,c){c=""+this.g.getParameterEscaped(a,c);(b||0>c.indexOf("<not defined>"))&&this.showString(a+" = "+c,!1)},"~S,~B,~N");c(c$,"showString",function(a,b){!this.isJS&&(this.isScriptQueued()&&
(!this.isSilent||b))&&JU.Logger.warn(a);this.scriptEcho(a)},"~S,~B");c(c$,"getAllSettings",function(a){return this.getStateCreator().getAllSettings(a)},"~S");c(c$,"getBindingInfo",function(a){return this.haveDisplay?this.acm.getBindingInfo(a):""},"~S");c(c$,"getIsosurfacePropertySmoothing",function(a){return a?this.g.isosurfacePropertySmoothingPower:this.g.isosurfacePropertySmoothing?1:0},"~B");c(c$,"setNavigationDepthPercent",function(a){this.tm.setNavigationDepthPercent(a);this.refresh(1,"set navigationDepth")},
"~N");c(c$,"getShowNavigationPoint",function(){return!this.g.navigationMode?!1:this.tm.isNavigating()&&!this.g.hideNavigationPoint||this.g.showNavigationPointAlways||this.getInMotion(!0)});c(c$,"getCurrentSolventProbeRadius",function(){return this.g.solventOn?this.g.solventProbeRadius:0});c(c$,"getTestFlag",function(a){switch(a){case 1:return this.g.testFlag1;case 2:return this.g.testFlag2;case 3:return this.g.testFlag3;case 4:return this.g.testFlag4}return!1},"~N");j(c$,"setPerspectiveDepth",function(a){this.tm.setPerspectiveDepth(a)},
"~B");j(c$,"setAxesOrientationRasmol",function(a){this.g.setB("axesOrientationRasmol",a);this.g.axesOrientationRasmol=a;this.reset(!0)},"~B");c(c$,"setAxesScale",function(a){a=JV.Viewer.checkFloatRange(a,-100,100);this.g.axesScale=a;this.axesAreTainted=!0},"~N");c(c$,"getAxisPoints",function(){this.shm.loadShape(34);return 0==this.getObjectMad(1)||603979808!=this.g.axesMode||this.getShapeProperty(34,"axesTypeXY").booleanValue()||null!=this.getShapeProperty(34,"origin")?null:this.getShapeProperty(34,
"axisPoints")});c(c$,"setAxesMode",function(a){this.g.axesMode=a;this.axesAreTainted=!0;switch(a){case 603979808:this.g.removeParam("axesmolecular");this.g.removeParam("axeswindow");this.g.setB("axesUnitcell",!0);a=2;break;case 603979804:this.g.removeParam("axesunitcell");this.g.removeParam("axeswindow");this.g.setB("axesMolecular",!0);a=1;break;case 603979810:this.g.removeParam("axesunitcell"),this.g.removeParam("axesmolecular"),this.g.setB("axesWindow",!0),a=0}this.g.setI("axesMode",a)},"~N");c(c$,
"setSelectionHalos",function(a){a!=this.ms.getSelectionHaloEnabled()&&(this.g.setB("selectionHalos",a),this.shm.loadShape(8),this.ms.setSelectionHaloEnabled(a))},"~B");c(c$,"getSelectionHaloEnabled",function(a){var b=this.ms.getSelectionHaloEnabled()||a&&this.showSelected;a&&(this.showSelected=!1);return b},"~B");c(c$,"setStrandCount",function(a,b){b=JV.Viewer.checkIntRange(b,0,20);switch(a){case 12:this.g.strandCountForStrands=b;break;case 13:this.g.strandCountForMeshRibbon=b;break;default:this.g.strandCountForStrands=
b,this.g.strandCountForMeshRibbon=b}this.g.setI("strandCount",b);this.g.setI("strandCountForStrands",this.g.strandCountForStrands);this.g.setI("strandCountForMeshRibbon",this.g.strandCountForMeshRibbon)},"~N,~N");c(c$,"getStrandCount",function(a){return 12==a?this.g.strandCountForStrands:this.g.strandCountForMeshRibbon},"~N");c(c$,"setNavigationMode",function(a){this.g.navigationMode=a;this.tm.setNavigationMode(a)},"~B");j(c$,"setAutoBond",function(a){this.g.setB("autobond",a);this.g.autoBond=a},
"~B");c(c$,"makeConnections",function(a,b,c,f,g,e,h,j,k,n){this.clearModelDependentObjects();this.clearMinimization();return this.ms.makeConnections(a,b,c,f,g,e,h,j,k,n)},"~N,~N,~N,~N,JU.BS,JU.BS,JU.BS,~B,~B,~N");j(c$,"rebond",function(){this.rebondState(!1)});c(c$,"rebondState",function(a){this.clearModelDependentObjects();this.ms.deleteAllBonds();a=a&&this.g.legacyAutoBonding;this.ms.autoBondBs4(null,null,null,null,this.getMadBond(),a);this.addStateScript(a?"set legacyAutoBonding TRUE;connect;set legacyAutoBonding FALSE;":
"connect;",!1,!0)},"~B");j(c$,"setPercentVdwAtom",function(a){this.g.setI("percentVdwAtom",a);this.g.percentVdwAtom=a;this.rd.value=a/100;this.rd.factorType=J.atomdata.RadiusData.EnumType.FACTOR;this.rd.vdwType=J.c.VDW.AUTO;this.shm.setShapeSizeBs(0,0,this.rd,null)},"~N");j(c$,"getMadBond",function(){return 2*this.g.bondRadiusMilliAngstroms});j(c$,"setShowHydrogens",function(a){this.g.setB("showHydrogens",a);this.g.showHydrogens=a},"~B");c(c$,"setShowBbcage",function(a){this.setObjectMad(32,"boundbox",
a?-4:0);this.g.setB("showBoundBox",a)},"~B");c(c$,"getShowBbcage",function(){return 0!=this.getObjectMad(4)});c(c$,"setShowUnitCell",function(a){this.setObjectMad(33,"unitcell",a?-2:0);this.g.setB("showUnitCell",a)},"~B");c(c$,"getShowUnitCell",function(){return 0!=this.getObjectMad(5)});c(c$,"setShowAxes",function(a){this.setObjectMad(34,"axes",a?-2:0);this.g.setB("showAxes",a)},"~B");c(c$,"getShowAxes",function(){return 0!=this.getObjectMad(1)});j(c$,"setFrankOn",function(a){this.isPreviewOnly&&
(a=!1);this.frankOn=a;this.setObjectMad(36,"frank",a?1:0)},"~B");c(c$,"getShowFrank",function(){return this.isPreviewOnly||this.isApplet&&this.creatingImage?!1:this.isSignedApplet&&!this.isSignedAppletLocal&&!this.isJS||this.frankOn});j(c$,"setShowMeasurements",function(a){this.g.setB("showMeasurements",a);this.g.showMeasurements=a},"~B");c(c$,"setUnits",function(a,b){this.g.setUnits(a);b&&(this.g.setUnits(a),this.setShapeProperty(6,"reformatDistances",null))},"~S,~B");j(c$,"setRasmolDefaults",function(){this.setDefaultsType("RasMol")});
j(c$,"setJmolDefaults",function(){this.setDefaultsType("Jmol")});c(c$,"setDefaultsType",function(a){a.equalsIgnoreCase("RasMol")?this.stm.setRasMolDefaults():a.equalsIgnoreCase("PyMOL")?this.stm.setPyMOLDefaults():(this.stm.setJmolDefaults(),this.setIntProperty("bondingVersion",0),this.shm.setShapeSizeBs(0,0,this.rd,this.getAllAtoms()))},"~S");c(c$,"setAntialias",function(a,b){switch(a){case 603979786:this.g.antialiasDisplay=b;break;case 603979790:this.g.antialiasTranslucent=b;break;case 603979788:this.g.antialiasImages=
b;return}this.resizeImage(0,0,!1,!1,!0)},"~N,~B");c(c$,"allocTempPoints",function(a){return this.tempArray.allocTempPoints(a)},"~N");c(c$,"freeTempPoints",function(a){this.tempArray.freeTempPoints(a)},"~A");c(c$,"allocTempScreens",function(a){return this.tempArray.allocTempScreens(a)},"~N");c(c$,"freeTempScreens",function(a){this.tempArray.freeTempScreens(a)},"~A");c(c$,"allocTempEnum",function(a){return this.tempArray.allocTempEnum(a)},"~N");c(c$,"freeTempEnum",function(a){this.tempArray.freeTempEnum(a)},
"~A");c(c$,"getFont3D",function(a,b,c){return this.gdata.getFont3DFSS(a,b,c)},"~S,~S,~N");c(c$,"getAtomGroupQuaternions",function(a,b){return this.ms.getAtomGroupQuaternions(a,b,this.getQuaternionFrame())},"JU.BS,~N");c(c$,"setStereoMode",function(a,b,c){this.setFloatProperty("stereoDegrees",c);this.setBooleanProperty("greyscaleRendering",b.isBiColor());null!=a?this.tm.setStereoMode2(a):this.tm.setStereoMode(b)},"~A,J.c.STER,~N");c(c$,"isStereoDouble",function(){return this.tm.stereoMode===J.c.STER.DOUBLE});
c(c$,"getChimeInfo",function(a){return this.getPropertyManager().getChimeInfo(a,this.bsA())},"~N");c(c$,"getModelFileInfo",function(){return this.getPropertyManager().getModelFileInfo(this.getVisibleFramesBitSet())});c(c$,"getModelFileInfoAll",function(){return this.getPropertyManager().getModelFileInfo(null)});j(c$,"getProperty",function(a,b,c){if(!"DATA_API".equals(a))return this.getPropertyManager().getProperty(a,b,c);switch("scriptCheck.........consoleText.........scriptEditor........scriptEditorState...getAppConsole.......getScriptEditor.....setMenu.............spaceGroupInfo......disablePopupMenu....defaultDirectory....getPopupMenu........shapeManager........".indexOf(b)){case 0:return this.scriptCheckRet(c,
!0);case 20:return null==this.appConsole?"":this.appConsole.getText();case 40:return this.showEditor(c),null;case 60:return this.scriptEditorVisible=c.booleanValue(),null;case 80:return this.$isKiosk?this.appConsole=null:q(c,J.api.JmolAppConsoleInterface)?this.appConsole=c:null!=c&&!c.booleanValue()?this.appConsole=null:null==this.appConsole&&(null!=c&&c.booleanValue())&&(this.isJS&&(this.appConsole=J.api.Interface.getOption("consolejs.AppletConsole",this,"script")),null!=this.appConsole&&this.appConsole.start(this)),
this.scriptEditor=this.isJS||null==this.appConsole?null:this.appConsole.getScriptEditor(),this.appConsole;case 100:return null==this.appConsole&&(null!=c&&c.booleanValue())&&(this.getProperty("DATA_API","getAppConsole",Boolean.TRUE),this.scriptEditor=null==this.appConsole?null:this.appConsole.getScriptEditor()),this.scriptEditor;case 120:return null!=this.jmolpopup&&this.jmolpopup.jpiDispose(),this.jmolpopup=null,this.menuStructure=c;case 140:return this.ms.getSymTemp(!0).getSpaceGroupInfo(this.ms,
null);case 160:return this.g.disablePopupMenu=!0,null;case 180:return this.g.defaultDirectory;case 200:return q(c,String)?this.getMenu(c):this.getPopupMenu();case 220:return this.shm.getProperty(c)}JU.Logger.error("ERROR in getProperty DATA_API: "+b);return null},"~S,~S,~O");c(c$,"showEditor",function(a){var b=this.getProperty("DATA_API","getScriptEditor",Boolean.TRUE);null!=b&&b.show(a)},"~A");c(c$,"getPropertyManager",function(){null==this.pm&&(this.pm=J.api.Interface.getInterface("JV.PropertyManager",
this,"prop")).setViewer(this);return this.pm});c(c$,"getModelExtract",function(a,b,c,f){return this.getPropertyManager().getModelExtract(this.getAtomBitSet(a),b,c,f)},"~O,~B,~B,~S");c(c$,"setTainted",function(a){this.isTainted=this.axesAreTainted=a&&(this.refreshing||this.creatingImage)},"~B");c(c$,"notifyMouseClicked",function(a,b,c,f){var g=JV.binding.Binding.getButtonMods(c),e=JV.binding.Binding.getClickCount(c);this.g.setI("_mouseX",a);this.g.setI("_mouseY",this.dimScreen.height-b);this.g.setI("_mouseAction",
c);this.g.setI("_mouseModifiers",g);this.g.setI("_clickCount",e);return this.sm.setStatusClicked(a,this.dimScreen.height-b,c,e,f)},"~N,~N,~N,~N");c(c$,"checkObjectClicked",function(a,b,c){return this.shm.checkObjectClicked(a,b,c,this.getVisibleFramesBitSet(),this.g.drawPicking)},"~N,~N,~N");c(c$,"checkObjectHovered",function(a,b){return 0<=a&&null!=this.shm&&this.shm.checkObjectHovered(a,b,this.getVisibleFramesBitSet(),this.getBondPicking())},"~N,~N");c(c$,"checkObjectDragged",function(a,b,c,f,g){var e=
0;switch(this.getPickingMode()){case 2:e=5;break;case 4:e=22}this.shm.checkObjectDragged(a,b,c,f,g,this.getVisibleFramesBitSet(),e)&&(this.refresh(1,"checkObjectDragged"),22==e&&this.scriptEcho(this.getShapeProperty(22,"command")))},"~N,~N,~N,~N,~N");c(c$,"rotateAxisAngleAtCenter",function(a,b,c,f,g,e,h){(a=this.tm.rotateAxisAngleAtCenter(a,b,c,f,g,e,h))&&this.setSync();return a},"J.api.JmolScriptEvaluator,JU.P3,JU.V3,~N,~N,~B,JU.BS");c(c$,"rotateAboutPointsInternal",function(a,b,c,f,g,e,h,j,k,n,
m){if(this.headless){if(e&&3.4028235E38==g)return!1;e=!1}(a=this.tm.rotateAboutPointsInternal(a,b,c,f,g,!1,e,h,!1,j,k,n,m))&&this.setSync();return a},"J.api.JmolScriptEvaluator,JU.P3,JU.P3,~N,~N,~B,JU.BS,JU.V3,JU.Lst,~A,JU.M4");c(c$,"startSpinningAxis",function(a,b,c){this.tm.spinOn||this.tm.navOn?(this.tm.setSpinOff(),this.tm.setNavOn(!1)):this.tm.rotateAboutPointsInternal(null,a,b,this.g.pickingSpinRate,3.4028235E38,c,!0,null,!1,null,null,null,null)},"JU.T3,JU.T3,~B");c(c$,"getModelDipole",function(){return this.ms.getModelDipole(this.am.cmi)});
c(c$,"calculateMolecularDipole",function(a){return this.ms.calculateMolecularDipole(this.am.cmi,a)},"JU.BS");c(c$,"setDefaultLattice",function(a){Float.isNaN(a.x+a.y+a.z)||this.g.ptDefaultLattice.setT(a);this.g.setO("defaultLattice",JU.Escape.eP(a))},"JU.P3");c(c$,"getDefaultLattice",function(){return this.g.ptDefaultLattice});c(c$,"getData",function(a,b){var c="";if(b.equalsIgnoreCase("MOL")||b.equalsIgnoreCase("SDF")||b.equalsIgnoreCase("V2000")||b.equalsIgnoreCase("V3000")||b.equalsIgnoreCase("XYZVIB")||
b.equalsIgnoreCase("CD")||b.equalsIgnoreCase("JSON"))return this.getModelExtract(a,!1,!1,b);if(0==b.toLowerCase().indexOf("property_"))c='{selected}.label("%{'+b+'}")';else{if(b.equalsIgnoreCase("CML"))return this.getModelCml(this.getAtomBitSet(a),2147483647,!0);c=b.equalsIgnoreCase("PDB")?'{selected and not hetero}.label("ATOM  %5i %-4a%1A%3.3n %1c%4R%1E   %8.3x%8.3y%8.3z%6.2Q%6.2b          %2e  ").lines+{selected and hetero}.label("HETATM%5i %-4a%1A%3.3n %1c%4R%1E   %8.3x%8.3y%8.3z%6.2Q%6.2b          %2e  ").lines':
b.equalsIgnoreCase("XYZRN")?'"" + {selected}.size + "\n\n"+{selected}.label("%-2e %8.3x %8.3y %8.3z %4.2[vdw] 1 [%n]%r.%a#%i").lines':b.startsWith("USER:")?'{selected}.label("'+b.substring(5)+'").lines':'"" + {selected}.size + "\n\n"+{selected}.label("%-2e %10.5x %10.5y %10.5z").lines'}a.equals("selected")||(c=JU.PT.rep(c,"selected",a));return this.evaluateExpression(c)},"~S,~S");c(c$,"getModelCml",function(a,b,c){return this.getPropertyManager().getModelCml(a,b,c)},"JU.BS,~N,~B");c(c$,"getPdbAtomData",
function(a,b){return this.getPropertyManager().getPdbAtomData(null==a?this.bsA():a,b)},"JU.BS,JU.OC");c(c$,"isJmolDataFrame",function(){return this.ms.isJmolDataFrameForModel(this.am.cmi)});c(c$,"setFrameTitle",function(a,b){this.ms.setFrameTitle(JU.BSUtil.newAndSetBit(a),b)},"~N,~S");c(c$,"setFrameTitleObj",function(a){this.shm.loadShape(31);this.ms.setFrameTitle(this.getVisibleFramesBitSet(),a)},"~O");c(c$,"getFrameTitle",function(){return this.ms.getFrameTitle(this.am.cmi)});c(c$,"setAtomProperty",
function(a,b,c,f,g,e,h){1649412120==b&&this.shm.deleteVdwDependentShapes(a);this.clearMinimization();this.ms.setAtomProperty(a,b,c,f,g,e,h);switch(b){case 1112541185:case 1112541186:case 1112541187:case 1112541188:case 1112541189:case 1112541190:case 1112539153:case 1112539154:case 1112539155:case 1087375365:this.refreshMeasures(!0)}},"JU.BS,~N,~N,~N,~S,~A,~A");c(c$,"checkCoordinatesChanged",function(){this.ms.recalculatePositionDependentQuantities(null,null);this.refreshMeasures(!0)});c(c$,"setAtomCoords",
function(a,b,c){0!=a.cardinality()&&(this.ms.setAtomCoords(a,b,c),this.checkMinimization(),this.sm.setStatusAtomMoved(a))},"JU.BS,~N,~O");c(c$,"setAtomCoordsRelative",function(a,b){null==b&&(b=this.bsA());0!=b.cardinality()&&(this.ms.setAtomCoordsRelative(a,b),this.checkMinimization(),this.sm.setStatusAtomMoved(b))},"JU.T3,JU.BS");c(c$,"invertAtomCoordPt",function(a,b){this.ms.invertSelected(a,null,-1,null,b);this.checkMinimization();this.sm.setStatusAtomMoved(b)},"JU.P3,JU.BS");c(c$,"invertAtomCoordPlane",
function(a,b){this.ms.invertSelected(null,a,-1,null,b);this.checkMinimization();this.sm.setStatusAtomMoved(b)},"JU.P4,JU.BS");c(c$,"invertSelected",function(a,b,c,f){var g=this.bsA();0!=g.cardinality()&&(this.ms.invertSelected(a,b,c,f,g),this.checkMinimization(),this.sm.setStatusAtomMoved(g))},"JU.P3,JU.P4,~N,JU.BS");c(c$,"moveAtoms",function(a,b,c,f,g,e,h,j){0!=h.cardinality()&&(this.ms.moveAtoms(a,b,c,f,h,g,e,j),this.checkMinimization(),this.sm.setStatusAtomMoved(h))},"JU.M4,JU.M3,JU.M3,JU.V3,JU.P3,~B,JU.BS,~B");
c(c$,"moveSelected",function(a,b,c,f,g,e,h,j){0!=c&&(-2147483648==f&&(this.rotateBondIndex=-1),this.isJmolDataFrame()||(-2147483648==a?(this.showSelected=!0,this.shm.loadShape(8),this.refresh(6,"moveSelected")):2147483647==a?this.showSelected&&(this.showSelected=!1,this.refresh(6,"moveSelected")):this.movingSelected||(this.movingSelected=!0,this.stopMinimization(),0<=this.rotateBondIndex&&-2147483648!=f?this.actionRotateBond(a,b,f,g):(e=this.setMovableBitSet(e,!j),0!=e.cardinality()&&(h?(f=this.ms.getAtomSetCenter(e),
this.tm.finalizeTransformParameters(),g=this.g.antialiasDisplay?2:1,h=this.tm.transformPt(f),a=-2147483648!=c?JU.P3.new3(h.x,h.y,h.z+c+0.5):JU.P3.new3(h.x+a*g+0.5,h.y+b*g+0.5,h.z),b=new JU.P3,this.tm.unTransformPoint(a,b),b.sub(f),this.setAtomCoordsRelative(b,e)):this.tm.rotateXYBy(a,b,e))),this.refresh(2,""),this.movingSelected=!1)))},"~N,~N,~N,~N,~N,JU.BS,~B,~B");c(c$,"highlightBond",function(a,b){if(!b||this.hoverEnabled){var c=null;if(0<=a){var f=this.ms.bo[a],c=f.atom2.i;if(!this.ms.isAtomAssignable(c))return;
c=JU.BSUtil.newAndSetBit(c);c.set(f.atom1.i)}this.highlight(c);this.refresh(3,"highlightBond")}},"~N,~B");c(c$,"highlight",function(a){null!=a&&this.shm.loadShape(8);this.setShapeProperty(8,"highlight",a)},"JU.BS");c(c$,"setRotateBondIndex",function(a){if(0<=this.rotateBondIndex||!(0>a))this.rotatePrev1=-1,this.bsRotateBranch=null,-2147483648!=a&&(this.rotateBondIndex=a,this.highlightBond(a,!1))},"~N");c(c$,"getRotateBondIndex",function(){return this.rotateBondIndex});c(c$,"actionRotateBond",function(a,
b,c,f){if(!(0>this.rotateBondIndex)){var g=this.bsRotateBranch,e,h;if(null==g){h=this.ms.bo[this.rotateBondIndex];e=h.atom1;h=h.atom2;this.undoMoveActionClear(e.i,2,!0);c=JU.P3.new3(c,f,x((e.sZ+h.sZ)/2));this.tm.unTransformPoint(c,c);if(1==h.getCovalentBondCount()||c.distance(e)<c.distance(h)&&1!=e.getCovalentBondCount())f=e,e=h,h=f;if(90<JU.Measure.computeAngleABC(c,e,h,!0)||90<JU.Measure.computeAngleABC(c,h,e,!0))g=this.getBranchBitSet(h.i,e.i,!0);if(null!=g){c=0;for(f=e.bonds.length;0<=--f;)if(g.get(e.getBondedAtomIndex(f))&&
2==++c){g=null;break}}null==g&&(g=this.ms.getMoleculeBitSetForAtom(e.i));this.bsRotateBranch=g;this.rotatePrev1=e.i;this.rotatePrev2=h.i}else e=this.ms.at[this.rotatePrev1],h=this.ms.at[this.rotatePrev2];c=JU.V3.new3(h.sX-e.sX,h.sY-e.sY,0);a=JU.V3.new3(a,b,0);c.cross(c,a);a=(0<c.z?1:-1)*a.length();g=JU.BSUtil.copy(g);g.andNot(this.slm.getMotionFixedAtoms());this.rotateAboutPointsInternal(this.eval,e,h,0,a,!1,g,null,null,null,null)}},"~N,~N,~N,~N");c(c$,"refreshMeasures",function(a){this.setShapeProperty(6,
"refresh",null);a&&this.stopMinimization()},"~B");c(c$,"functionXY",function(a,b,c){var f=null;if(0==a.indexOf("file:"))f=this.getFileAsString3(a.substring(5),!1,null);else if(0!=a.indexOf("data2d_"))return this.sm.functionXY(a,b,c);b=Math.abs(b);c=Math.abs(c);if(null==f){a=this.getDataFloat2D(a);if(null!=a)return a;f=""}a=M(b,c,0);var g=M(b*c,0);JU.Parser.parseStringInfestedFloatArray(f,null,g);for(var e=f=0;f<b;f++)for(var h=0;h<c;h++)a[f][h]=g[e++];return a},"~S,~N,~N");c(c$,"functionXYZ",function(a,
b,c,f){var g=null;if(0==a.indexOf("file:"))g=this.getFileAsString3(a.substring(5),!1,null);else if(0!=a.indexOf("data3d_"))return this.sm.functionXYZ(a,b,c,f);b=Math.abs(b);c=Math.abs(c);f=Math.abs(f);if(null==g){a=this.getDataFloat3D(a);if(null!=a)return a;g=""}a=M(b,c,f,0);var e=M(b*c*f,0);JU.Parser.parseStringInfestedFloatArray(g,null,e);for(var h=g=0;g<b;g++)for(var j=0;j<c;j++)for(var k=0;k<f;k++)a[g][j][k]=e[h++];return a},"~S,~N,~N,~N");j(c$,"extractMolData",function(a){if(null==a){a=this.am.cmi;
if(0>a)return null;a=this.getModelNumberDotted(a)}return this.getModelExtract(a,!0,!1,"V2000")},"~S");c(c$,"getNMRPredict",function(a){var b=this.getModelExtract("selected",!0,!1,"V2000"),c=b.indexOf("\n"),b="Jmol "+JV.Viewer.version_date+b.substring(c);return a?(this.isApplet?this.showUrl(this.g.nmrUrlFormat+b):(this.syncScript("true","*",0),this.syncScript("H1Simulate:",".",0)),null):this.getFileAsString3(this.g.nmrPredictFormat+b,!1,null)},"~B");c(c$,"getHelp",function(a){0>this.g.helpPath.indexOf("?")?
(0<a.length&&0!=a.indexOf("?")&&(a="?search="+JU.PT.rep(a," ","%20")),a+=(0==a.length?"?ver=":"&ver=")+JV.JC.version):a="&"+a;this.showUrl(this.g.helpPath+a)},"~S");c(c$,"show2D",function(a){this.showUrl(this.setLoadFormat("_"+a,"2",!1))},"~S");c(c$,"getChemicalInfo",function(a,b){var c=null,f="/";switch(null==b?1073742035:b.tok){case 1073741977:f="I";break;case 1073741978:f="K";break;case 1073742159:f="T";break;case 1073742160:f="S";break;case 1073742035:f="N";break;default:c=JS.SV.sValue(b)}var g=
this.setLoadFormat("_"+a,f,!1);"/"==f&&(g+=JU.PT.rep(c," ","%20"));return this.getFileAsString4(g,-1,!1,!1,!1,"file")},"~S,JS.T");c(c$,"addCommand",function(a){!this.autoExit&&(this.haveDisplay&&this.getPreserveState())&&this.commandHistory.addCommand(JU.PT.replaceAllCharacters(a,"\r\n\t"," "))},"~S");c(c$,"removeCommand",function(){return this.commandHistory.removeCommand()});j(c$,"getSetHistory",function(a){return this.commandHistory.getSetHistory(a)},"~N");c(c$,"historyFind",function(a,b){return this.commandHistory.find(a,
b)},"~S,~N");c(c$,"setHistory",function(a){this.commandHistory.getSetHistory(-2147483648);this.commandHistory.addCommand(this.getFileAsString4(a,-1,!1,!1,!0,null))},"~S");c(c$,"getOutputChannel",function(a,b){return this.getOutputManager().getOutputChannel(a,b)},"~S,~A");j(c$,"writeTextFile",function(a,b){var c=new java.util.Hashtable;c.put("fileName",a);c.put("type","txt");c.put("text",b);this.outputToFile(c)},"~S,~S");j(c$,"clipImageOrPasteText",function(a){return!this.haveAccess(JV.Viewer.ACCESS.ALL)?
"no":this.getOutputManager().clipImageOrPasteText(a)},"~S");j(c$,"getClipboardText",function(){if(!this.haveAccess(JV.Viewer.ACCESS.ALL))return"no";try{return this.getOutputManager().getClipboardText()}catch(a){if(B(a,Error))return J.i18n.GT._("clipboard is not accessible -- use signed applet");throw a;}});c(c$,"processWriteOrCapture",function(a){return this.getOutputManager().processWriteOrCapture(a)},"java.util.Map");c(c$,"createZip",function(a,b,c){var f=new java.util.Hashtable;f.put("fileName",
a);f.put("type",b);f.put("text",this.getStateInfo());q(c,Array)?f.put("scripts",c):q(c,JU.Lst)&&f.put("imageData",c);return this.getOutputManager().outputToFile(f)},"~S,~S,~O");j(c$,"outputToFile",function(a){return this.getOutputManager().outputToFile(a)},"java.util.Map");c(c$,"getOutputManager",function(){return null!=this.outputManager?this.outputManager:(this.outputManager=J.api.Interface.getInterface("JV.OutputManager"+(this.isJS?"JS":"Awt"),this,"file")).setViewer(this,this.privateKey)});c(c$,
"setSyncTarget",function(a,b){switch(a){case 0:this.sm.syncingMouse=b;break;case 1:this.sm.syncingScripts=b;break;case 2:this.sm.syncSend(b?"GET_GRAPHICS":"SET_GRAPHICS_OFF","*",0);Float.isNaN(this.tm.stereoDegrees)&&this.setFloatProperty("stereoDegrees",-5);b&&(this.setBooleanProperty("_syncMouse",!1),this.setBooleanProperty("_syncScript",!1));return}!this.sm.syncingScripts&&!this.sm.syncingMouse&&this.setSync()},"~N,~B");j(c$,"syncScript",function(a,b,c){this.getStateCreator().syncScript(a,b,c)},
"~S,~S,~N");j(c$,"getModelIndexFromId",function(a){return this.ms.getModelIndexFromId(a)},"~S");c(c$,"setSyncDriver",function(a){this.sm.setSyncDriver(a)},"~N");c(c$,"getPartialCharges",function(){return this.ms.getPartialCharges()});c(c$,"setProteinType",function(a,b){this.ms.setProteinType(null==b?this.bsA():b,a)},"J.c.STR,JU.BS");c(c$,"getVanderwaalsMar",function(a){return this.defaultVdw===J.c.VDW.USER?this.userVdwMars[a]:JU.Elements.getVanderwaalsMar(a,this.defaultVdw)},"~N");c(c$,"getVanderwaalsMarType",
function(a,b){if(null==b)b=this.defaultVdw;else switch(b){case J.c.VDW.AUTO:case J.c.VDW.AUTO_BABEL:case J.c.VDW.AUTO_JMOL:case J.c.VDW.AUTO_RASMOL:this.defaultVdw!==J.c.VDW.AUTO&&(b=this.defaultVdw)}b===J.c.VDW.USER&&null==this.bsUserVdws&&(b=J.c.VDW.JMOL);return b===J.c.VDW.USER?this.userVdwMars[a&127]:JU.Elements.getVanderwaalsMar(a,b)},"~N,J.c.VDW");c(c$,"setVdwStr",function(a){a=J.c.VDW.getVdwType(a);null==a&&(a=J.c.VDW.AUTO);switch(a){case J.c.VDW.JMOL:case J.c.VDW.BABEL:case J.c.VDW.RASMOL:case J.c.VDW.AUTO:case J.c.VDW.USER:break;
default:a=J.c.VDW.JMOL}a!==this.defaultVdw&&(a===J.c.VDW.USER&&null==this.bsUserVdws)&&this.setUserVdw(this.defaultVdw);this.defaultVdw=a;this.g.setO("defaultVDW",a.getVdwLabel())},"~S");c(c$,"setUserVdw",function(a){this.userVdwMars=E(JU.Elements.elementNumberMax,0);this.userVdws=M(JU.Elements.elementNumberMax,0);this.bsUserVdws=new JU.BS;a===J.c.VDW.USER&&(a=J.c.VDW.JMOL);for(var b=1;b<JU.Elements.elementNumberMax;b++)this.userVdwMars[b]=JU.Elements.getVanderwaalsMar(b,a),this.userVdws[b]=this.userVdwMars[b]/
1E3},"J.c.VDW");c(c$,"getDefaultVdwNameOrData",function(a,b,c){switch(a){case -2147483648:return this.defaultVdw.getVdwLabel();case 2147483647:if(null==(c=this.bsUserVdws))return"";b=J.c.VDW.USER}if(null==b||b===J.c.VDW.AUTO)b=this.defaultVdw;b===J.c.VDW.USER&&null==this.bsUserVdws&&this.setUserVdw(this.defaultVdw);return this.getDataManager().getDefaultVdwNameOrData(b,c)},"~N,J.c.VDW,JU.BS");c(c$,"deleteAtoms",function(a,b){var c=null==a?-1:a.nextSetBit(0);if(0>c)return 0;this.clearModelDependentObjects();
if(!b){this.sm.modifySend(c,this.ms.at[c].mi,4,"deleting atom "+this.ms.at[c].getAtomName());this.ms.deleteAtoms(a);var f=this.slm.deleteAtoms(a);this.setTainted(!0);this.sm.modifySend(c,this.ms.at[c].mi,-4,"OK");return f}return this.deleteModels(this.ms.at[c].mi,a)},"JU.BS,~B");c(c$,"deleteModels",function(a,b){this.clearModelDependentObjects();this.sm.modifySend(-1,a,5,"deleting model "+this.getModelNumberDotted(a));this.setCurrentModelIndexClear(0,!1);this.am.setAnimationOn(!1);var c=JU.BSUtil.copy(this.slm.bsDeleted),
f=null==b?JU.BSUtil.newAndSetBit(a):this.ms.getModelBS(b,!1),f=this.ms.deleteModels(f);this.slm.processDeletedModelAtoms(f);null!=this.eval&&this.eval.deleteAtomsInVariables(f);this.setAnimationRange(0,0);this.clearRepaintManager(-1);this.am.clear();this.am.initializePointers(1);this.setCurrentModelIndexClear(1<this.ms.mc?-1:0,1<this.ms.mc);this.hoverAtomIndex=-1;this.setFileLoadStatus(J.c.FIL.DELETED,null,null,null,null,null);this.refreshMeasures(!0);null!=c&&f.andNot(c);this.sm.modifySend(-1,a,
-5,"OK");return JU.BSUtil.cardinalityOf(f)},"~N,JU.BS");c(c$,"deleteBonds",function(a){var b=this.ms.bo[a.nextSetBit(0)].atom1.mi;this.sm.modifySend(-1,b,2,"delete bonds "+JU.Escape.eBond(a));this.ms.deleteBonds(a,!1);this.sm.modifySend(-1,b,-2,"OK")},"JU.BS");c(c$,"deleteModelAtoms",function(a,b,c,f){this.sm.modifySend(-1,a,1,"delete atoms "+JU.Escape.eBS(f));JU.BSUtil.deleteBits(this.bsFrameOffsets,f);this.getDataManager().deleteModelAtoms(b,c,f);this.sm.modifySend(-1,a,-1,"OK")},"~N,~N,~N,JU.BS");
c(c$,"getQuaternionFrame",function(){return this.g.quaternionFrame.charAt(2==this.g.quaternionFrame.length?1:0)});c(c$,"loadImageData",function(a,b,c,f){null==a&&this.scriptEcho(b);null==c?this.setBackgroundImage(null==a?null:b,a):(this.shm.loadShape(31),this.setShapeProperty(31,"text",b),null!=a&&this.setShapeProperty(31,"image",a));this.isJS&&null!=f&&(f.mustResumeEval=!0,this.eval.resumeEval(f))},"~O,~S,~S,JS.ScriptContext");c(c$,"cd",function(a){null==a?a=".":0==a.length&&(this.setStringProperty("defaultDirectory",
""),a=".");a=this.fm.getDefaultDirectory(a+(a.equals("=")?"":a.endsWith("/")?"X.spt":"/X.spt"));0<a.length&&this.setStringProperty("defaultDirectory",a);this.fm.getFilePath(a+"/",!0,!1).startsWith("file:/")&&JV.FileManager.setLocalPath(this,a,!1);return a},"~S");c(c$,"setErrorMessage",function(a,b){this.errorMessageUntranslated=b;null!=a&&this.eval.stopScriptThreads();return this.errorMessage=a},"~S,~S");j(c$,"getErrorMessage",function(){return this.errorMessage});j(c$,"getErrorMessageUn",function(){return null==
this.errorMessageUntranslated?this.errorMessage:this.errorMessageUntranslated});c(c$,"setShapeErrorState",function(a,b){this.currentShapeID=a;this.currentShapeState=b},"~N,~S");c(c$,"getShapeErrorState",function(){if(0>this.currentShapeID)return"";this.shm.releaseShape(this.currentShapeID);this.clearRepaintManager(this.currentShapeID);return JV.JC.getShapeClassName(this.currentShapeID,!1)+" "+this.currentShapeState});c(c$,"handleError",function(a,b){try{b&&this.zapMsg(""+a),this.undoClear(),0==JU.Logger.getLogLevel()&&
JU.Logger.setLogLevel(4),this.setCursor(0),this.setBooleanProperty("refreshing",!0),this.fm.setPathForAllFiles(""),JU.Logger.error("vwr handling error condition: "+a+"  "),this.isJS||a.printStackTrace(),this.notifyError("Error","doClear="+b+"; "+a,""+a)}catch(c){try{JU.Logger.error("Could not notify error "+a+": due to "+c)}catch(f){}}},"Error,~B");c(c$,"getFunctions",function(a){return a?JV.Viewer.staticFunctions:this.localFunctions},"~B");c(c$,"removeFunction",function(a){a=a.toLowerCase();null!=
this.getFunction(a)&&(JV.Viewer.staticFunctions.remove(a),this.localFunctions.remove(a))},"~S");c(c$,"getFunction",function(a){if(null==a)return null;a=(JV.Viewer.isStaticFunction(a)?JV.Viewer.staticFunctions:this.localFunctions).get(a);return null==a||null==a.geTokens()?null:a},"~S");c$.isStaticFunction=c(c$,"isStaticFunction",function(a){return a.startsWith("static_")},"~S");c(c$,"isFunction",function(a){return(JV.Viewer.isStaticFunction(a)?JV.Viewer.staticFunctions:this.localFunctions).containsKey(a)},
"~S");c(c$,"clearFunctions",function(){JV.Viewer.staticFunctions.clear();this.localFunctions.clear()});c(c$,"addFunction",function(a){var b=a.getName();(JV.Viewer.isStaticFunction(b)?JV.Viewer.staticFunctions:this.localFunctions).put(b,a)},"J.api.JmolScriptFunction");c(c$,"getFunctionCalls",function(a){return this.getStateCreator().getFunctionCalls(a)},"~S");c(c$,"warn",function(a){this.isPrintOnly||JU.Logger.warn(a)},"~S");c(c$,"checkPrivateKey",function(a){return a==this.privateKey},"~N");c(c$,
"bindAction",function(a,b){this.haveDisplay&&this.acm.bind(a,b)},"~S,~S");c(c$,"unBindAction",function(a,b){this.haveDisplay&&this.acm.unbindAction(a,b)},"~S,~S");c(c$,"getPlaneIntersection",function(a,b,c,f){return this.ms.getPlaneIntersection(a,b,c,f,1614417948==a?this.getCurrentUnitCell():null)},"~N,JU.P4,~N,~N");c(c$,"calculateStruts",function(a,b){return this.ms.calculateStruts(null==a?this.bsA():a,null==b?this.bsA():b)},"JU.BS,JU.BS");c(c$,"getPreserveState",function(){return this.g.preserveState&&
null!=this.scm});c(c$,"isKiosk",function(){return this.$isKiosk});c(c$,"hasFocus",function(){return this.haveDisplay&&(this.$isKiosk||this.apiPlatform.hasFocus(this.display))});c(c$,"setFocus",function(){this.haveDisplay&&!this.apiPlatform.hasFocus(this.display)&&this.apiPlatform.requestFocusInWindow(this.display)});c(c$,"stopMinimization",function(){null!=this.minimizer&&this.minimizer.setProperty("stop",null)});c(c$,"clearMinimization",function(){null!=this.minimizer&&this.minimizer.setProperty("clear",
null)});c(c$,"getMinimizationInfo",function(){return null==this.minimizer?"":this.minimizer.getProperty("log",0)});c(c$,"checkMinimization",function(){this.refreshMeasures(!0);if(this.g.monitorEnergy){try{this.minimize(null,0,0,this.getAllAtoms(),null,0,!1,!1,!0,!1)}catch(a){if(!B(a,Exception))throw a;}this.echoMessage(this.getP("_minimizationForceField")+" Energy = "+this.getP("_minimizationEnergy"))}});c(c$,"minimize",function(a,b,c,f,g,e,h,j,k,n){var m=this.g.forceField,p=this.getModelUndeletedAtomsBitSetBs(this.getVisibleFramesBitSet());
null==f?f=this.getModelUndeletedAtomsBitSet(this.getVisibleFramesBitSet().length()-1):f.and(p);0>=e&&(e=5);g=JU.BSUtil.copy(null==g?this.slm.getMotionFixedAtoms():g);var q=0<g.cardinality();q&&f.andNot(g);e=j?new JU.BS:this.ms.getAtomsWithinRadius(e,f,!0,null);e.andNot(f);q?g.and(e):g=e;g.and(p);h&&f.or(this.addHydrogens(f,n,k));if(200<f.cardinality())JU.Logger.error("Too many atoms for minimization (>200)");else try{k||JU.Logger.info("Minimizing "+f.cardinality()+" atoms"),this.getMinimizer(!0).minimize(b,
c,f,g,q,k,m)}catch(s){if(B(s,JV.JmolAsyncException))a.loadFileResourceAsync(s.getFileName());else if(B(s,Exception))a=s,JU.Logger.error("Minimization error: "+a.toString()),this.isJS||a.printStackTrace();else throw s;}},"J.api.JmolScriptEvaluator,~N,~N,JU.BS,JU.BS,~N,~B,~B,~B,~B");c(c$,"setMotionFixedAtoms",function(a){this.slm.setMotionFixedAtoms(a)},"JU.BS");c(c$,"getMotionFixedAtoms",function(){return this.slm.getMotionFixedAtoms()});c(c$,"getAtomicPropertyState",function(a,b,c,f,g){this.getStateCreator().getAtomicPropertyStateBuffer(a,
b,c,f,g)},"JU.SB,~N,JU.BS,~S,~A");c(c$,"getCenterAndPoints",function(a,b){return this.ms.getCenterAndPoints(a,b)},"JU.Lst,~B");c(c$,"writeFileData",function(a,b,c,f){return this.getOutputManager().writeFileData(a,b,c,f)},"~S,~S,~N,~A");c(c$,"getPdbData",function(a,b,c,f,g,e){return this.getPropertyManager().getPdbData(a,b,null==c?this.bsA():c,f,g,e)},"~N,~S,JU.BS,~A,JU.OC,~B");c(c$,"getGroupsWithin",function(a,b){return this.ms.getGroupsWithin(a,b)},"~N,JU.BS");c(c$,"getExecutor",function(){if(null!=
this.executor||2>JV.Viewer.nProcessors)return this.executor;try{this.executor=J.api.Interface.getInterface("JS.ScriptParallelProcessor",null,null).getExecutor()}catch(a){if(B(a,Exception))this.executor=null;else if(B(a,Error))this.executor=null;else throw a;}null==this.executor&&JU.Logger.error("parallel processing is not available");return this.executor});c(c$,"setShapeSize",function(a,b,c){null==c&&(c=this.bsA());this.shm.setShapeSizeBs(a,b,null,c)},"~N,~N,JU.BS");c(c$,"setShapeProperty",function(a,
b,c){0>a||this.shm.setShapePropertyBs(a,b,c,null)},"~N,~S,~O");c(c$,"getShapeProperty",function(a,b){return this.shm.getShapePropertyIndex(a,b,-2147483648)},"~N,~S");c(c$,"getShapePropertyAsInt",function(a,b){var c=this.getShapeProperty(a,b);return null==c||!q(c,Integer)?-2147483648:c.intValue()},"~N,~S");c(c$,"setModelVisibility",function(){null!=this.shm&&this.shm.setModelVisibility()});c(c$,"resetShapes",function(a){this.shm.resetShapes();a&&(this.shm.loadDefaultShapes(this.ms),this.clearRepaintManager(-1))},
"~B");c(c$,"setParallel",function(a){return this.$isParallel=this.g.multiProcessor&&a},"~B");c(c$,"isParallel",function(){return this.g.multiProcessor&&this.$isParallel});c(c$,"setAtomPickingOption",function(a){this.haveDisplay&&this.acm.setAtomPickingOption(a)},"~S");c(c$,"setBondPickingOption",function(a){this.haveDisplay&&this.acm.setBondPickingOption(a)},"~S");c(c$,"undoClear",function(){this.actionStates.clear();this.actionStatesRedo.clear()});c(c$,"undoMoveAction",function(a,b){this.getStateCreator().undoMoveAction(a,
b)},"~N,~N");c(c$,"undoMoveActionClear",function(a,b,c){this.g.preserveState&&this.getStateCreator().undoMoveActionClear(a,b,c)},"~N,~N,~B");c(c$,"moveAtomWithHydrogens",function(a,b,c,f,g){this.stopMinimization();if(null==g){var e=this.ms.at[a];g=JU.BSUtil.newAndSetBit(a);a=e.bonds;if(null!=a)for(var h=0;h<a.length;h++){var j=a[h].getOtherAtom(e);1==j.getElementNumber()&&g.set(j.i)}}this.moveSelected(b,c,f,-2147483648,-2147483648,g,!0,!0)},"~N,~N,~N,~N,JU.BS");c(c$,"isModelPDB",function(a){return this.ms.am[a].isBioModel},
"~N");j(c$,"deleteMeasurement",function(a){this.setShapeProperty(6,"delete",Integer.$valueOf(a))},"~N");j(c$,"getSmiles",function(a){return this.getSmilesOpt(a,-1,-1,!1,!1,!1,!1,!1)},"JU.BS");c(c$,"getSmilesOpt",function(a,b,c,f,g,e,h,j){var k=this.ms.at;null==a&&(0>b||0>c?a=this.bsA():(g&&(b>c&&(a=b,b=c,c=a),b=k[b].group.firstAtomIndex,c=k[c].group.lastAtomIndex),a=new JU.BS,a.setBits(b,c+1)));b=j?JV.Viewer.getJmolVersion()+" "+this.getModelName(this.am.cmi):null;return this.getSmilesMatcher().getSmiles(k,
this.ms.ac,a,g,e,h,b,f)},"JU.BS,~N,~N,~B,~B,~B,~B,~B");c(c$,"prompt",function(a,b,c,f){return this.$isKiosk?"null":this.apiPlatform.prompt(a,b,c,f)},"~S,~S,~A,~B");c(c$,"initializeExporter",function(a){var b=a.get("type").equals("JS");if(b){if(null!=this.jsExporter3D)return this.jsExporter3D.initializeOutput(this,this.privateKey,a),this.jsExporter3D}else{var c=a.get("fileName"),f=a.get("fullPath"),c=this.getOutputChannel(c,f);if(null==c)return null;a.put("outputChannel",c)}c=J.api.Interface.getOption("export.Export3D",
this,"export");if(null==c)return null;a=c.initializeExporter(this,this.privateKey,this.gdata,a);b&&null!=a&&(this.jsExporter3D=c);return null==a?null:c},"java.util.Map");c(c$,"getMouseEnabled",function(){return this.refreshing&&!this.creatingImage});j(c$,"calcAtomsMinMax",function(a,b){this.ms.calcAtomsMinMax(a,b)},"JU.BS,JU.BoxInfo");c(c$,"getObjectMap",function(a,b){switch(b){case "{":if(null!=this.getScriptManager()){var c=this.eval.getDefinedAtomSets();null!=c&&a.putAll(c);JS.T.getTokensType(a,
3145728)}break;case "$":case "0":this.shm.getObjectMap(a,"$"==b)}},"java.util.Map,~S");c(c$,"setPicked",function(a){var b=null,c=null;0<=a&&(this.g.setI("_atompicked",a),b=this.g.getParam("picked",!0),c=this.g.getParam("pickedList",!0));if(null==b||10!=b.tok)b=JS.SV.newV(10,new JU.BS),c=JS.SV.getVariableList(new JU.Lst),this.g.setUserVariable("picked",b),this.g.setUserVariable("pickedList",c);0>a||(JS.SV.getBitSet(b,!1).set(a),b=c.pushPop(null,null),10==b.tok&&c.pushPop(b,null),(10!=b.tok||!b.value.get(a))&&
c.pushPop(JS.SV.newV(10,JU.BSUtil.newAndSetBit(a)),null))},"~N");j(c$,"runScript",function(a){var b=new JU.SB;try{if(null==this.getScriptManager())return null;this.eval.runScriptBuffer(a,b)}catch(c){if(B(c,Exception))return this.eval.getErrorMessage();throw c;}return b.toString()},"~S");c(c$,"setFrameDelayMs",function(a){this.ms.setFrameDelayMs(a,this.getVisibleFramesBitSet())},"~N");c(c$,"getBaseModelBitSet",function(){return this.ms.getModelAtomBitSetIncludingDeleted(this.getJDXBaseModelIndex(this.am.cmi),
!0)});c(c$,"clearTimeouts",function(){null!=this.timeouts&&J.thread.TimeoutThread.clear(this.timeouts)});c(c$,"setTimeout",function(a,b,c){this.haveDisplay&&(!this.headless&&!this.autoExit)&&(null==a?this.clearTimeouts():(null==this.timeouts&&(this.timeouts=new java.util.Hashtable),J.thread.TimeoutThread.setTimeout(this,this.timeouts,a,b,c)))},"~S,~N,~S");c(c$,"triggerTimeout",function(a){this.haveDisplay&&null!=this.timeouts&&J.thread.TimeoutThread.trigger(this.timeouts,a)},"~S");c(c$,"clearTimeout",
function(a){this.setTimeout(a,0,null)},"~S");c(c$,"showTimeout",function(a){return this.haveDisplay?J.thread.TimeoutThread.showTimeout(this.timeouts,a):""},"~S");c(c$,"calculatePartialCharges",function(a){if(null==a||0==a.cardinality())a=this.getModelUndeletedAtomsBitSetBs(this.getVisibleFramesBitSet());this.getMinimizer(!0).calculatePartialCharges(this.ms.bo,this.ms.bondCount,this.ms.at,a)},"JU.BS");c(c$,"setCurrentModelID",function(a){var b=this.am.cmi;0<=b&&this.ms.setInfo(b,"modelID",a)},"~S");
c(c$,"cacheClear",function(){this.fm.cacheClear();this.ligandModels=this.ligandModelSet=null;this.ms.clearCache()});c(c$,"cachePut",function(a,b){JU.Logger.info("Viewer cachePut "+a);this.fm.cachePut(a,b)},"~S,~O");c(c$,"cacheFileByName",function(a,b){return null==a?(this.cacheClear(),-1):this.fm.cacheFileByNameAdd(a,b)},"~S,~B");c(c$,"clearThreads",function(){null!=this.eval&&this.eval.stopScriptThreads();this.stopMinimization();this.tm.clearThreads();this.setAnimationOn(!1)});c(c$,"getEvalContextAndHoldQueue",
function(a){if(null==a||!this.isJS&&!this.testAsync)return null;a.pushContextDown("getEvalContextAndHoldQueue");a=a.getThisContext();a.setMustResume();this.queueOnHold=a.isJSThread=!0;return a},"J.api.JmolScriptEvaluator");j(c$,"resizeInnerPanel",function(a,b){return this.autoExit||!this.haveDisplay?(this.setScreenDimension(a,b),this.dimScreen):this.sm.resizeInnerPanel(a,b)},"~N,~N");c(c$,"getFontLineShapeState",function(a,b,c){return this.getStateCreator().getFontLineShapeState(a,b,c)},"~S,~S,~A");
c(c$,"getShapeSetState",function(a,b,c,f,g,e,h){this.getStateCreator().getShapeSetState(a,b,c,f,g,e,h)},"J.shape.AtomShape,J.shape.Shape,~N,~A,JU.BS,java.util.Map,java.util.Map");c(c$,"getMeasurementState",function(a,b,c,f,g){return this.getStateCreator().getMeasurementState(a,b,c,f,g)},"J.shape.Measures,JU.Lst,~N,javajs.awt.Font,JM.TickInfo");c(c$,"getBondState",function(a,b,c){return this.getStateCreator().getBondState(a,b,c)},"J.shape.Shape,JU.BS,~B");c(c$,"getAtomShapeSetState",function(a,b){return this.getStateCreator().getAtomShapeSetState(a,
b)},"J.shape.Shape,~A");c(c$,"getShapeState",function(a){return this.getStateCreator().getShapeState(a)},"J.shape.Shape");c(c$,"getAtomShapeState",function(a){return this.getStateCreator().getAtomShapeState(a)},"J.shape.AtomShape");c(c$,"getDefaultPropertyParam",function(a){return this.getPropertyManager().getDefaultPropertyParam(a)},"~N");c(c$,"getPropertyNumber",function(a){return this.getPropertyManager().getPropertyNumber(a)},"~S");c(c$,"checkPropertyParameter",function(a){return this.getPropertyManager().checkPropertyParameter(a)},
"~S");c(c$,"extractProperty",function(a,b,c){return this.getPropertyManager().extractProperty(a,b,c,null,!1)},"~O,~O,~N");c(c$,"addHydrogens",function(a,b,c){var f=null==a;null==a&&(a=this.getModelUndeletedAtomsBitSet(this.getVisibleFramesBitSet().length()-1));var g=new JU.BS;if(0==a.cardinality()||this.ms.at[a.nextSetBit(0)].mi!=this.ms.mc-1)return g;var e=new JU.Lst,f=this.getAdditionalHydrogens(a,f,!1,e),h=!1,h=this.g.appendNew;if(0<f.length){this.clearModelDependentObjects();try{g=b?this.ms.addHydrogens(e,
f):this.addHydrogensInline(a,e,f)}catch(j){if(B(j,Exception))System.out.println(j.toString());else throw j;}h&&(this.g.appendNew=!0)}c||this.scriptStatus(J.i18n.GT.i(J.i18n.GT._("{0} hydrogens added"),f.length));return g},"JU.BS,~B,~B");c(c$,"addHydrogensInline",function(a,b,c){return null==this.getScriptManager()?null:this.scm.addHydrogensInline(a,b,c)},"JU.BS,JU.Lst,~A");j(c$,"evalFunctionFloat",function(a,b,c){return null==this.getScriptManager()?0:this.eval.evalFunctionFloat(a,b,c)},"~O,~O,~A");
c(c$,"evalParallel",function(a,b){this.displayLoadErrors=!1;var c=null!=this.getScriptManager()&&this.eval.evalParallel(a,null==b?this.shm:b);this.displayLoadErrors=!0;return c},"JS.ScriptContext,JV.ShapeManager");j(c$,"evaluateExpression",function(a){return null==this.getScriptManager()?null:this.eval.evaluateExpression(a,!1,!1)},"~O");c(c$,"evaluateExpressionAsVariable",function(a){return null==this.getScriptManager()?null:this.eval.evaluateExpression(a,!0,!1)},"~O");c(c$,"getAtomBitSet",function(a){if(q(a,
JU.BS))return this.slm.excludeAtoms(a,!1);this.getScriptManager();return this.getAtomBitSetEval(this.eval,a)},"~O");c(c$,"getAtomBitSetVector",function(a){return null==this.getScriptManager()?null:this.eval.getAtomBitSetVector(this.ms.ac,a)},"~O");c(c$,"getContextVariables",function(){return null==this.getScriptManager()?null:this.eval.getContextVariables()});c(c$,"getScriptContext",function(a){return null==this.getScriptManager()?null:this.eval.getScriptContext(a)},"~S");c(c$,"getAtomDefs",function(a){var b=
new JU.SB,c;for(a=a.entrySet().iterator();a.hasNext()&&((c=a.next())||1);)q(c.getValue(),JU.BS)&&b.append("{"+c.getKey()+"} <"+c.getValue().cardinality()+" atoms>\n");return b.append("\n").toString()},"java.util.Map");c(c$,"setCGO",function(a){this.shm.loadShape(23);this.shm.setShapePropertyBs(23,"setCGO",a,null)},"JU.Lst");c(c$,"setModelSet",function(a){this.ms=this.mm.modelSet=a},"JM.ModelSet");c(c$,"setObjectProp",function(a,b){this.getScriptManager();null==a&&(a="*");return null==this.eval?null:
this.eval.setObjectPropSafe(a,b)},"~S,~N");c(c$,"setDihedrals",function(a,b,c){null==b&&(b=this.ms.getBsBranches(a));this.ms.setDihedrals(a,b,c)},"~A,~A,~N");c(c$,"getChainID",function(a,b){var c=this.chainMap.get(a);if(null!=c)return c.intValue();var f=a.charCodeAt(0);1<a.length?f=300+this.chainList.size():b&&(97<=f&&122>=f)&&(f+=159);256<=f&&this.chainList.addLast(a);c=Integer.$valueOf(f);this.chainMap.put(c,a);this.chainMap.put(a,c);return f},"~S,~B");c(c$,"getChainIDStr",function(a){return this.chainMap.get(Integer.$valueOf(a))},
"~N");c(c$,"getScriptQueueInfo",function(){return null!=this.scm&&this.scm.isQueueProcessing()?Boolean.TRUE:Boolean.FALSE});c(c$,"getNMRCalculation",function(){return null==this.nmrCalculation?(this.nmrCalculation=J.api.Interface.getOption("quantum.NMRCalculation",this,"script")).setViewer(this):this.nmrCalculation});c(c$,"getDistanceUnits",function(a){null==a&&(a=this.getDefaultMeasurementLabel(2));var b=a.indexOf("//");return 0>b?this.g.measureDistanceUnits:a.substring(b+2)},"~S");c(c$,"calculateFormalCharges",
function(a){return this.ms.fixFormalCharges(null==a?this.bsA():a)},"JU.BS");c(c$,"cachePngFiles",function(){return!this.getTestFlag(1)});c(c$,"setModulation",function(a,b,c,f){f&&this.g.setO("_modt",JU.Escape.eP(c));this.ms.setModulation(null==a?this.getAllAtoms():a,b,c,f);this.refreshMeasures(!0)},"JU.BS,~B,JU.P3,~B");c(c$,"checkInMotion",function(a){switch(a){case 0:this.setTimeout("_SET_IN_MOTION_",0,null);break;case 1:this.inMotion||this.setTimeout("_SET_IN_MOTION_",2*this.g.hoverDelayMs,"!setInMotion");
break;case 2:this.setInMotion(!0),this.refresh(3,"timeoutThread set in motion")}},"~N");c(c$,"checkMotionRendering",function(a){if(!this.getInMotion(!0)&&!this.tm.spinOn&&!this.tm.vibrationOn&&!this.am.animationOn)return!0;if(this.g.wireframeRotation)return!1;var b=0;switch(a){case 1678770178:case 1141899265:b=2;break;case 1113198596:b=3;break;case 1113198597:b=4;break;case 1113200642:b=5;break;case 1073742018:b=6;break;case 603979967:b=7;break;case 603979786:b=8}return this.g.platformSpeed>=b},"~N");
c(c$,"openExportChannel",function(a,b,c){return this.getOutputManager().openOutputChannel(a,b,c,!1)},"~N,~S,~B");j(c$,"log",function(a){null!=a&&this.getOutputManager().logToFile(a)},"~S");c(c$,"getLogFileName",function(){return null==this.logFileName?"":this.logFileName});c(c$,"getCommands",function(a,b,c){return this.getStateCreator().getCommands(a,b,c)},"java.util.Map,java.util.Map,~S");c(c$,"allowCapture",function(){return!this.isApplet||this.isSignedApplet});c(c$,"compileExpr",function(a){var b=
null==this.getScriptManager()?null:this.eval.evaluateExpression(a,!1,!0);return q(b,Array)?b:[JS.T.o(4,a)]},"~S");c(c$,"checkSelect",function(a,b){return null!=this.getScriptManager()&&this.eval.checkSelect(a,b)},"java.util.Map,~A");c(c$,"getAnnotationInfo",function(a,b,c){return this.getAnnotationParser().getAnnotationInfo(this,a,b,c,this.am.cmi)},"JS.SV,~S,~N");c(c$,"getAtomValidation",function(a,b){return this.getAnnotationParser().getAtomValidation(this,a,b)},"~S,JM.Atom");c(c$,"getJzt",function(){return null==
this.jzt?this.jzt=J.api.Interface.getInterface("JU.ZipTools",this,"zip"):this.jzt});c(c$,"dragMinimizeAtom",function(a){this.stopMinimization();var b=0==this.getMotionFixedAtoms().cardinality()?this.ms.getAtoms(this.ms.isAtomPDB(a)?1087373318:1095761936,JU.BSUtil.newAndSetBit(a)):JU.BSUtil.setAll(this.ms.ac);try{this.minimize(null,2147483647,0,b,null,0,!1,!1,!1,!1)}catch(c){if(B(c,Exception)){if(this.async){var f=this;setTimeout(function(){f.dragMinimizeAtom(a)},100)}}else throw c;}},"~N");c(c$,"getJBR",
function(){return null==this.jbr?this.jbr=J.api.Interface.getInterface("JM.Resolver",this,"file").setViewer(this):this.jbr});c(c$,"checkMenuUpdate",function(){null!=this.jmolpopup&&this.jmolpopup.jpiUpdateComputedMenus()});I(self.c$);c$=A(JV.Viewer,"ACCESS",Enum);D(c$,"NONE",0,[]);D(c$,"READSPT",1,[]);D(c$,"ALL",2,[]);c$=L();self.Jmol&&Jmol.extend&&Jmol.extend("vwr",JV.Viewer.prototype);C(c$,"appletDocumentBase","","appletCodeBase","","appletIdiomaBase",null,"jsDocumentBase","");c$.strJavaVendor=
c$.prototype.strJavaVendor="Java: "+System.getProperty("java.vendor","j2s");c$.strOSName=c$.prototype.strOSName=System.getProperty("os.name","");c$.strJavaVersion=c$.prototype.strJavaVersion="Java "+System.getProperty("java.version","");C(c$,"version_date",null,"SYNC_GRAPHICS_MESSAGE","GET_GRAPHICS","SYNC_NO_GRAPHICS_MESSAGE","SET_GRAPHICS_OFF");c$.staticFunctions=c$.prototype.staticFunctions=new java.util.Hashtable;C(c$,"nProcessors",1)}))})();ca._coreLoaded=!0})(Clazz,Clazz.newLongArray,Clazz.doubleToByte,
Clazz.doubleToInt,Clazz.doubleToLong,Clazz.declarePackage,Clazz.instanceOf,Clazz.load,Clazz.instantialize,Clazz.decorateAsClass,Clazz.floatToInt,Clazz.floatToLong,Clazz.makeConstructor,Clazz.defineEnumConstant,Clazz.exceptionOf,Clazz.newIntArray,Clazz.defineStatics,Clazz.newFloatArray,Clazz.declareType,Clazz.prepareFields,Clazz.superConstructor,Clazz.newByteArray,Clazz.declareInterface,Clazz.p0p,Clazz.pu$h,Clazz.newShortArray,Clazz.innerTypeInstance,Clazz.isClassDefined,Clazz.prepareCallback,Clazz.newArray,
Clazz.castNullAs,Clazz.floatToShort,Clazz.superCall,Clazz.decorateAsType,Clazz.newBooleanArray,Clazz.newCharArray,Clazz.implementOf,Clazz.newDoubleArray,Clazz.overrideConstructor,Clazz.clone,Clazz.doubleToShort,Clazz.getInheritedLevel,Clazz.getParamsType,Clazz.isAF,Clazz.isAI,Clazz.isAS,Clazz.isASS,Clazz.isAP,Clazz.isAFloat,Clazz.isAII,Clazz.isAFF,Clazz.isAFFF,Clazz.tryToSearchAndExecute,Clazz.getStackTrace,Clazz.inheritArgs,Clazz.alert,Clazz.defineMethod,Clazz.overrideMethod,Clazz.declareAnonymous,
Clazz.cloneFinals);
