ProteoWizard
MSIHandler.hpp
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1//
2// $Id$
3//
4//
5// Original author: Robert Burke <robert.burke@proteowizard.org>
6//
7// Copyright 2008 Spielberg Family Center for Applied Proteomics
8// Cedars-Sinai Medical Center, Los Angeles, California 90048
9//
10// Licensed under the Apache License, Version 2.0 (the "License");
11// you may not use this file except in compliance with the License.
12// You may obtain a copy of the License at
13//
14// http://www.apache.org/licenses/LICENSE-2.0
15//
16// Unless required by applicable law or agreed to in writing, software
17// distributed under the License is distributed on an "AS IS" BASIS,
18// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19// See the License for the specific language governing permissions and
20// limitations under the License.
21//
22
23
24#ifndef _MSIREADER_HPP_
25#define _MSIREADER_HPP_
26
28#include "TabReader.hpp"
29#include "boost/shared_ptr.hpp"
30
31namespace pwiz {
32namespace util {
33
35{
36public:
37
38 struct Record
39 {
40 Record() : scan(0), time(0), mz(0), intensity(0), charge(0), chargeStates(0), kl(0), background(0), median(0), peaks(0), scanFirst(0), scanLast(0), scanCount(0) {}
41 Record(const std::vector<std::string>& fields);
42 Record(const Record& r);
43
44 size_t scan;
45 float time;
46 float mz;
47 float mass;
48 float intensity;
49 int charge;
51 float kl;
53 float median;
54 int peaks;
58
59 };
60
62
63 virtual ~MSIHandler() {}
64
65 virtual bool updateRecord(const std::vector<std::string>& fields);
66
67 size_t size() const;
68
69 Record record(size_t index) const;
70
72
73private:
74 class Impl;
75 boost::shared_ptr<Impl> pimpl;
76};
77
78} // namespace pwiz
79} // namespace utility
80
81
82#endif // _MSIREADER_HPP_
#define PWIZ_API_DECL
Definition Export.hpp:32
Record record(size_t index) const
boost::shared_ptr< Impl > pimpl
virtual bool updateRecord(const std::vector< std::string > &fields)
size_t size() const
Record lastRecord() const
Record(const std::vector< std::string > &fields)