ProteoWizard
PrecursorRecalculatorDefault.hpp
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1//
2// $Id$
3//
4//
5// Original author: Darren Kessner <darren@proteowizard.org>
6//
7// Copyright 2008 Spielberg Family Center for Applied Proteomics
8// Cedars-Sinai Medical Center, Los Angeles, California 90048
9//
10// Licensed under the Apache License, Version 2.0 (the "License");
11// you may not use this file except in compliance with the License.
12// You may obtain a copy of the License at
13//
14// http://www.apache.org/licenses/LICENSE-2.0
15//
16// Unless required by applicable law or agreed to in writing, software
17// distributed under the License is distributed on an "AS IS" BASIS,
18// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19// See the License for the specific language governing permissions and
20// limitations under the License.
21//
22
23
24#ifndef _PRECURSORRECALCULATORDEFAULT_HPP_
25#define _PRECURSORRECALCULATORDEFAULT_HPP_
26
27
30
31
32namespace pwiz {
33namespace analysis {
34
35
37{
38 public:
39
41 {
42 boost::shared_ptr<PeakFamilyDetector> peakFamilyDetector;
43 std::ostream* log;
44
47
48 enum SortBy {SortBy_Proximity, SortBy_Score};
50
51 Config() : log(0), mzLeftWidth(0), mzRightWidth(0), sortBy(SortBy_Proximity) {}
52 };
53
55
56 virtual void recalculate(const MZIntensityPair* begin,
57 const MZIntensityPair* end,
58 const PrecursorInfo& initialEstimate,
59 std::vector<PrecursorInfo>& result) const;
60
61 private:
62 class Impl;
63 boost::shared_ptr<Impl> impl_;
66};
67
68
69} // namespace analysis
70} // namespace pwiz
71
72
73#endif // _PRECURSORRECALCULATORDEFAULT_HPP_
74
#define PWIZ_API_DECL
Definition Export.hpp:32
virtual void recalculate(const MZIntensityPair *begin, const MZIntensityPair *end, const PrecursorInfo &initialEstimate, std::vector< PrecursorInfo > &result) const
PrecursorRecalculatorDefault & operator=(PrecursorRecalculatorDefault &)
PrecursorRecalculatorDefault(PrecursorRecalculatorDefault &)
The data point type of a mass spectrum.
Definition MSData.hpp:423