ProteoWizard
PeakFitter.hpp
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1//
2// $Id$
3//
4//
5// Original author: Darren Kessner <darren@proteowizard.org>
6//
7// Copyright 2009 Center for Applied Molecular Medicine
8// University of Southern California, Los Angeles, CA
9//
10// Licensed under the Apache License, Version 2.0 (the "License");
11// you may not use this file except in compliance with the License.
12// You may obtain a copy of the License at
13//
14// http://www.apache.org/licenses/LICENSE-2.0
15//
16// Unless required by applicable law or agreed to in writing, software
17// distributed under the License is distributed on an "AS IS" BASIS,
18// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19// See the License for the specific language governing permissions and
20// limitations under the License.
21//
22
23#ifndef _PEAKFITTER_HPP_
24#define _PEAKFITTER_HPP_
25
26
30#include <vector>
31
32
33namespace pwiz {
34namespace analysis {
35
36
37///
38/// interface for fitting peaks in an array of ordered pairs
39///
41{
42 public:
43
45
46 virtual void fitPeak(const math::OrderedPairContainerRef& pairs,
47 size_t index,
48 Peak& result) const = 0;
49
51 std::vector<size_t>& indices,
52 std::vector<Peak>& result) const;
53
54 virtual ~PeakFitter(){}
55};
56
57
58///
59/// PeakFitter implementation based on fitting a parabola
60///
62{
63 public:
64
65 struct Config
66 {
68
69 Config(size_t _windowRadius = 1)
70 : windowRadius(_windowRadius)
71 {}
72 };
73
74 PeakFitter_Parabola(const Config& config = Config());
75
76 virtual void fitPeak(const math::OrderedPairContainerRef& pairs,
77 size_t index,
78 Peak& result) const;
79
80 private:
82};
83
84
85} // namespace analysis
86} // namespace pwiz
87
88
89#endif // _PEAKFITTER_HPP_
90
#define PWIZ_API_DECL
Definition Export.hpp:32
PeakFitter implementation based on fitting a parabola.
virtual void fitPeak(const math::OrderedPairContainerRef &pairs, size_t index, Peak &result) const
PeakFitter_Parabola(const Config &config=Config())
interface for fitting peaks in an array of ordered pairs
void fitPeaks(const math::OrderedPairContainerRef &pairs, std::vector< size_t > &indices, std::vector< Peak > &result) const
virtual void fitPeak(const math::OrderedPairContainerRef &pairs, size_t index, Peak &result) const =0
pwiz::data::peakdata::Peak Peak
wrapper class for accessing contiguous data as a container of OrderedPairs; note that it does not own...