Aeso                    Congenital oesophageal atresia data
CharSequence2ScoreSequence
                        Convert a character sequence into a score
                        sequence
CharSequences2ScoreSequences
                        Convert several character sequences into score
                        sequences
HydroScore              Dictionary
MarkovParameters        Functions parameters global description
RealScores2IntegerScores
                        Convert a real scores vector into an integer
                        scores vector
SJSyndrome              Stevens-Johnson syndrome data
Seq1093                 Long protein sequence
Seq219                  Protein sequence
Seq31                   Short protein sequence
SeqListSCOPe            Several sequences
automatic_analysis      Automatic analysis
daudin                  Daudin [p-value] [iid]
exact_mc                Exact method for p-value [Markov chains]
karlin                  Karlin [p-value] [iid]
karlinMonteCarlo        Monte Carlo - Karlin [p-value]
lindley                 Lindley process
loadMatrixFromFile      Loads matrix from csv-File
loadScoreFromFile       Load score from file
localScoreC             Local score
maxPartialSumd          Maximum of the partial sum [probability] [iid]
mcc                     MCC [p-value] [iid]
monteCarlo              Monte Carlo method [p-value]
proba_theoretical_first_excursion_iid
                        Probability P(Q(1)>= a) that the height of the
                        first excursion is greater or equal to 'a'
                        given a i.i.d. model on the letters sequence
proba_theoretical_ith_excursion_iid
                        Probability P(Q(i)>= a) that the height of the
                        ith excursion (sequential order) is greater or
                        equal to 'a' given a i.i.d. model on the
                        letters sequence
proba_theoretical_ith_excursion_markov
                        theoretical probability of reaching the
                        threshold score a on the i-th excursion
                        (sequential order) of a markov's score sequence
recordTimes             Calculate the record times of a sequence
scoreSequences2probabilityVector
                        Empirical distribution from sequences
sequences2transmatrix   Transition matrix from sequence(s)
stationary_distribution
                        Stationary distribution [Markov chains]
transmatrix2sequence    Sampling function for Markov chains
