dpkg-checkbuilddeps: error: unmet build dependencies: gfortran-for-host (>= 4:4.9.2-2)
[1;33mW: Unmet build-dependency in source[0m
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-base using existing ./r-base_4.6.0.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building r-base in r-base_4.6.0-2~trixiecran.0.debian.tar.xz
dpkg-source: info: building r-base in r-base_4.6.0-2~trixiecran.0.dsc
[0mI: Generating source changes file for original dsc[0m
dpkg-genchanges: warning: the current version (4.6.0-2~trixiecran.0) is earlier than the previous one (4.6.0-2)
dpkg-genchanges: info: including full source code in upload
[0mI: pbuilder: network access will be disabled during build[0m
[0mI: Current time: Mon Apr 27 19:32:10 CEST 2026[0m
[0mI: pbuilder-time-stamp: 1777311130[0m
[0mI: Building the build Environment[0m
[0mI: extracting base tarball [/var/cache/pbuilder/trixie-i386-base.tgz][0m
[0mI: copying local configuration[0m
[0mI: Installing apt-lines[0m
[0mI: mounting /proc filesystem[0m
[0mI: mounting /sys filesystem[0m
[0mI: creating /{dev,run}/shm[0m
[0mI: mounting /dev/pts filesystem[0m
[0mI: redirecting /dev/ptmx to /dev/pts/ptmx[0m
[0mI: policy-rc.d already exists[0m
[0mI: Obtaining the cached apt archive contents[0m
[0mI: Copying source file[0m
[0mI: copying [../r-base_4.6.0-2~trixiecran.0.dsc][0m
[0mI: copying [../r-base_4.6.0.orig.tar.gz][0m
[0mI: copying [../r-base_4.6.0-2~trixiecran.0.debian.tar.xz][0m
[0mI: Extracting source[0m
dpkg-source: warning: extracting unsigned source package (r-base_4.6.0-2~trixiecran.0.dsc)
dpkg-source: info: extracting r-base in r-base-4.6.0
dpkg-source: info: unpacking r-base_4.6.0.orig.tar.gz
dpkg-source: info: unpacking r-base_4.6.0-2~trixiecran.0.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying set_R_LIBS_USER_and_SITE_in_Renviron.patch
dpkg-source: info: applying alter_sed_call
[0mI: using fakeroot in build.[0m
[0mI: Installing the build-deps[0m
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: gfortran-for-host (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 13), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, libtirpc-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 15525 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on gfortran-for-host (>= 4:4.9.2-2); however:
  Package gfortran-for-host is not installed.
 pbuilder-satisfydepends-dummy depends on libblas-dev; however:
  Package libblas-dev is not installed.
 pbuilder-satisfydepends-dummy depends on liblapack-dev; however:
  Package liblapack-dev is not installed.
 pbuilder-satisfydepends-dummy depends on tcl8.6-dev; however:
  Package tcl8.6-dev is not installed.
 pbuilder-satisfydepends-dummy depends on tk8.6-dev; however:
  Package tk8.6-dev is not installed.
 pbuilder-satisfydepends-dummy depends on bison; however:
  Package bison is not installed.
 pbuilder-satisfydepends-dummy depends on groff-base; however:
  Package groff-base is not installed.
 pbuilder-satisfydepends-dummy depends on libncurses-dev; however:
  Package libncurses-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libreadline-dev; however:
  Package libreadline-dev is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on texinfo; however:
  Package texinfo is not installed.
 pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
  Package libbz2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on liblzma-dev; however:
  Package liblzma-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpcre2-dev; however:
  Package libpcre2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcurl4-openssl-dev | libcurl4-dev; however:
  Package libcurl4-openssl-dev is not installed.
  Package libcurl4-dev is not installed.
 pbuilder-satisfydepends-dummy depends on xdg-utils; however:
  Package xdg-utils is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpng-dev; however:
  Package libpng-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libjpeg-dev; however:
  Package libjpeg-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libx11-dev; however:
  Package libx11-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libxt-dev; however:
  Package libxt-dev is not installed.
 pbuilder-satisfydepends-dummy depends on x11proto-core-dev; however:
  Package x11proto-core-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpango1.0-dev; however:
  Package libpango1.0-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcairo2-dev; however:
  Package libcairo2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtiff-dev; however:
  Package libtiff-dev is not installed.
 pbuilder-satisfydepends-dummy depends on xvfb; however:
  Package xvfb is not installed.
 pbuilder-satisfydepends-dummy depends on xauth; however:
  Package xauth is not installed.
 pbuilder-satisfydepends-dummy depends on xfonts-base; however:
  Package xfonts-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-base; however:
  Package texlive-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
  Package texlive-latex-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however:
  Package texlive-plain-generic is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
  Package texlive-fonts-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however:
  Package texlive-fonts-extra is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-extra-utils; however:
  Package texlive-extra-utils is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
  Package texlive-latex-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
  Package texlive-latex-extra is not installed.
 pbuilder-satisfydepends-dummy depends on default-jdk | openjdk-10-jdk; however:
  Package default-jdk is not installed.
  Package openjdk-10-jdk is not installed.
 pbuilder-satisfydepends-dummy depends on mpack; however:
  Package mpack is not installed.
 pbuilder-satisfydepends-dummy depends on bash-completion; however:
  Package bash-completion is not installed.
 pbuilder-satisfydepends-dummy depends on libtirpc-dev; however:
  Package libtirpc-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bison{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} comerr-dev{a} cpp-14-for-host{a} cpp-for-host{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gcc-14-for-host{a} gcc-for-host{a} gettext{a} gettext-base{a} gfortran-14-for-host{a} gfortran-14-i686-linux-gnu{a} gfortran-for-host{a} gfortran-i686-linux-gnu{a} gir1.2-freedesktop{a} gir1.2-freedesktop-dev{a} gir1.2-glib-2.0{a} gir1.2-glib-2.0-dev{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} girepository-tools{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} intltool-debian{a} java-common{a} krb5-multidev{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdatrie-dev{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libedit2{a} libelf1t64{a} libepoxy0{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libffi8{a} libfile-homedir-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontbox-java{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran-14-dev{a} libgfortran5{a} libgif7{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libgl1{a} libgl1-mesa-dri{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphite2-3{a} libgraphite2-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz-cairo0{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm19{a} liblzma-dev{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libmime-charset-perl{a} libmount-dev{a} libmpfi0{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnspr4{a} libnss3{a} libp11-kit-dev{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangoxft-1.0-0{a} libpaper-utils{a} libpaper2{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcsclite1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm-dev{a} libsm6{a} libsombok3{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsynctex2{a} libsysprof-capture-4-dev{a} libsystemd-shared{a} libtasn1-6{a} libtasn1-6-dev{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunbound8{a} libunicode-linebreak-perl{a} libunistring5{a} libunwind8{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft-dev{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxkbfile1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6t64{a} libxtst6{a} libxxf86vm1{a} libyaml-tiny-perl{a} libz3-4{a} libzstd-dev{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpack{a} native-architecture{a} netbase{a} nettle-dev{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pango1.0-tools{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3-packaging{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} t1utils{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} texinfo{a} texinfo-lib{a} texlive-base{a} texlive-binaries{a} texlive-extra-utils{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tk8.6{a} tk8.6-dev{a} ucf{a} uuid-dev{a} x11-common{a} x11-xkb-utils{a} x11proto-core-dev{a} x11proto-dev{a} xauth{a} xdg-utils{a} xfonts-base{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xserver-common{a} xtrans-dev{a} xvfb{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  alsa-topology-conf alsa-ucm-conf at-spi2-core bzip2-doc chrony cm-super curl dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix ghostscript javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libgtk-3-bin libkmod2 libldap-common liblog-log4perl-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libnss-systemd libpng-tools librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libtasn1-doc libwww-perl libx11-protocol-perl libxml-sax-expat-perl linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd psmisc publicsuffix ruby systemd-cryptsetup systemd-timesyncd tex-gyre texlive-fonts-extra-links tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 407 newly installed, 0 to remove and 0 not upgraded.
Need to get 7866 kB/1195 MB of archives. After unpacking 3423 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-3+b10 [25.3 kB]
Get: 2 http://security.debian.org/debian-security trixie-security/main i386 openssl i386 3.5.5-1~deb13u2 [1504 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 comerr-dev i386 2.1-1.47.2-3+b10 [57.2 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 cpp-14-for-host i386 14.2.0-19 [1140 B]
Get: 5 http://deb.debian.org/debian trixie/main i386 cpp-for-host i386 4:14.2.0-1 [4900 B]
Get: 6 http://deb.debian.org/debian trixie/main i386 gcc-14-for-host i386 14.2.0-19 [1024 B]
Get: 7 http://deb.debian.org/debian trixie/main i386 gcc-for-host i386 4:14.2.0-1 [1060 B]
Get: 8 http://deb.debian.org/debian trixie/main i386 gfortran-14-for-host i386 14.2.0-19 [1076 B]
Get: 9 http://deb.debian.org/debian trixie/main i386 gfortran-for-host i386 4:14.2.0-1 [1092 B]
Get: 10 http://security.debian.org/debian-security trixie-security/main i386 libgdk-pixbuf2.0-common all 2.42.12+dfsg-4+deb13u1 [312 kB]
Get: 11 http://security.debian.org/debian-security trixie-security/main i386 libpng16-16t64 i386 1.6.48-1+deb13u4 [290 kB]
Get: 12 http://security.debian.org/debian-security trixie-security/main i386 libtiff6 i386 4.7.0-3+deb13u2 [360 kB]
Get: 13 http://security.debian.org/debian-security trixie-security/main i386 libgdk-pixbuf-2.0-0 i386 2.42.12+dfsg-4+deb13u1 [149 kB]
Get: 14 http://security.debian.org/debian-security trixie-security/main i386 libfreetype6 i386 2.13.3+dfsg-1+deb13u1 [464 kB]
Get: 15 http://security.debian.org/debian-security trixie-security/main i386 libpng-dev i386 1.6.48-1+deb13u4 [374 kB]
Get: 16 http://security.debian.org/debian-security trixie-security/main i386 libfreetype-dev i386 2.13.3+dfsg-1+deb13u1 [640 kB]
Get: 17 http://security.debian.org/debian-security trixie-security/main i386 libssl-dev i386 3.5.5-1~deb13u2 [3003 kB]
Get: 18 http://security.debian.org/debian-security trixie-security/main i386 libtiffxx6 i386 4.7.0-3+deb13u2 [165 kB]
Get: 19 http://security.debian.org/debian-security trixie-security/main i386 libtiff-dev i386 4.7.0-3+deb13u2 [512 kB]
Fetched 7866 kB in 0s (16.3 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libsystemd-shared:i386.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 15525 files and directories currently installed.)
Preparing to unpack .../libsystemd-shared_257.9-1~deb13u1_i386.deb ...
Unpacking libsystemd-shared:i386 (257.9-1~deb13u1) ...
Selecting previously unselected package libapparmor1:i386.
Preparing to unpack .../libapparmor1_4.1.0-1_i386.deb ...
Unpacking libapparmor1:i386 (4.1.0-1) ...
Setting up libsystemd-shared:i386 (257.9-1~deb13u1) ...
Selecting previously unselected package systemd.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 15538 files and directories currently installed.)
Preparing to unpack .../systemd_257.9-1~deb13u1_i386.deb ...
Unpacking systemd (257.9-1~deb13u1) ...
Setting up libapparmor1:i386 (4.1.0-1) ...
Setting up systemd (257.9-1~deb13u1) ...
Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'.
Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'.
Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'.
Initializing machine ID from random generator.
Creating group 'systemd-journal' with GID 999.
Creating group 'systemd-network' with GID 998.
Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998.
[0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
Selecting previously unselected package systemd-sysv.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 16474 files and directories currently installed.)
Preparing to unpack .../0-systemd-sysv_257.9-1~deb13u1_i386.deb ...
Unpacking systemd-sysv (257.9-1~deb13u1) ...
Selecting previously unselected package libdbus-1-3:i386.
Preparing to unpack .../1-libdbus-1-3_1.16.2-2_i386.deb ...
Unpacking libdbus-1-3:i386 (1.16.2-2) ...
Selecting previously unselected package dbus-bin.
Preparing to unpack .../2-dbus-bin_1.16.2-2_i386.deb ...
Unpacking dbus-bin (1.16.2-2) ...
Selecting previously unselected package dbus-session-bus-common.
Preparing to unpack .../3-dbus-session-bus-common_1.16.2-2_all.deb ...
Unpacking dbus-session-bus-common (1.16.2-2) ...
Selecting previously unselected package libexpat1:i386.
Preparing to unpack .../4-libexpat1_2.7.1-2_i386.deb ...
Unpacking libexpat1:i386 (2.7.1-2) ...
Selecting previously unselected package dbus-daemon.
Preparing to unpack .../5-dbus-daemon_1.16.2-2_i386.deb ...
Unpacking dbus-daemon (1.16.2-2) ...
Selecting previously unselected package dbus-system-bus-common.
Preparing to unpack .../6-dbus-system-bus-common_1.16.2-2_all.deb ...
Unpacking dbus-system-bus-common (1.16.2-2) ...
Selecting previously unselected package dbus.
Preparing to unpack .../7-dbus_1.16.2-2_i386.deb ...
Unpacking dbus (1.16.2-2) ...
Selecting previously unselected package libpython3.13-minimal:i386.
Preparing to unpack .../8-libpython3.13-minimal_3.13.5-2_i386.deb ...
Unpacking libpython3.13-minimal:i386 (3.13.5-2) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../9-python3.13-minimal_3.13.5-2_i386.deb ...
Unpacking python3.13-minimal (3.13.5-2) ...
Setting up libpython3.13-minimal:i386 (3.13.5-2) ...
Setting up libexpat1:i386 (2.7.1-2) ...
Setting up python3.13-minimal (3.13.5-2) ...
Selecting previously unselected package python3-minimal.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 16901 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.5-1_i386.deb ...
Unpacking python3-minimal (3.13.5-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_13.0.0_all.deb ...
Unpacking media-types (13.0.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.5_all.deb ...
Unpacking netbase (6.5) ...
Selecting previously unselected package libffi8:i386.
Preparing to unpack .../3-libffi8_3.4.8-2_i386.deb ...
Unpacking libffi8:i386 (3.4.8-2) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../4-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:i386.
Preparing to unpack .../5-libreadline8t64_8.2-6_i386.deb ...
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:i386 (8.2-6) ...
Selecting previously unselected package libpython3.13-stdlib:i386.
Preparing to unpack .../6-libpython3.13-stdlib_3.13.5-2_i386.deb ...
Unpacking libpython3.13-stdlib:i386 (3.13.5-2) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../7-python3.13_3.13.5-2_i386.deb ...
Unpacking python3.13 (3.13.5-2) ...
Selecting previously unselected package libpython3-stdlib:i386.
Preparing to unpack .../8-libpython3-stdlib_3.13.5-1_i386.deb ...
Unpacking libpython3-stdlib:i386 (3.13.5-1) ...
Setting up python3-minimal (3.13.5-1) ...
Selecting previously unselected package python3.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 17398 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.5-1_i386.deb ...
Unpacking python3 (3.13.5-1) ...
Selecting previously unselected package libproc2-0:i386.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_i386.deb ...
Unpacking libproc2-0:i386 (2:4.0.4-9) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-9_i386.deb ...
Unpacking procps (2:4.0.4-9) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../003-sensible-utils_0.0.25_all.deb ...
Unpacking sensible-utils (0.0.25) ...
Selecting previously unselected package bash-completion.
Preparing to unpack .../004-bash-completion_1%3a2.16.0-7_all.deb ...
Unpacking bash-completion (1:2.16.0-7) ...
Selecting previously unselected package openssl.
Preparing to unpack .../005-openssl_3.5.5-1~deb13u2_i386.deb ...
Unpacking openssl (3.5.5-1~deb13u2) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../006-ca-certificates_20250419_all.deb ...
Unpacking ca-certificates (20250419) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../007-libmagic-mgc_1%3a5.46-5_i386.deb ...
Unpacking libmagic-mgc (1:5.46-5) ...
Selecting previously unselected package libmagic1t64:i386.
Preparing to unpack .../008-libmagic1t64_1%3a5.46-5_i386.deb ...
Unpacking libmagic1t64:i386 (1:5.46-5) ...
Selecting previously unselected package file.
Preparing to unpack .../009-file_1%3a5.46-5_i386.deb ...
Unpacking file (1:5.46-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../010-gettext-base_0.23.1-2_i386.deb ...
Unpacking gettext-base (0.23.1-2) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_i386.deb ...
Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../012-groff-base_1.23.0-9_i386.deb ...
Unpacking groff-base (1.23.0-9) ...
Selecting previously unselected package libpam-systemd:i386.
Preparing to unpack .../013-libpam-systemd_257.9-1~deb13u1_i386.deb ...
Unpacking libpam-systemd:i386 (257.9-1~deb13u1) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../014-bsdextrautils_2.41-5_i386.deb ...
Unpacking bsdextrautils (2.41-5) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../015-libpipeline1_1.5.8-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../016-man-db_2.13.1-1_i386.deb ...
Unpacking man-db (2.13.1-1) ...
Selecting previously unselected package libtext-charwidth-perl:i386.
Preparing to unpack .../017-libtext-charwidth-perl_0.04-11+b4_i386.deb ...
Unpacking libtext-charwidth-perl:i386 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../018-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../019-ucf_3.0052_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0052) ...
Selecting previously unselected package libgdk-pixbuf2.0-common.
Preparing to unpack .../020-libgdk-pixbuf2.0-common_2.42.12+dfsg-4+deb13u1_all.deb ...
Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-4+deb13u1) ...
Selecting previously unselected package libglib2.0-0t64:i386.
Preparing to unpack .../021-libglib2.0-0t64_2.84.4-3~deb13u2_i386.deb ...
Unpacking libglib2.0-0t64:i386 (2.84.4-3~deb13u2) ...
Selecting previously unselected package libxml2:i386.
Preparing to unpack .../022-libxml2_2.12.7+dfsg+really2.9.14-2.1+deb13u2_i386.deb ...
Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-2.1+deb13u2) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../023-shared-mime-info_2.4-5+b2_i386.deb ...
Unpacking shared-mime-info (2.4-5+b2) ...
Selecting previously unselected package libjpeg62-turbo:i386.
Preparing to unpack .../024-libjpeg62-turbo_1%3a2.1.5-4_i386.deb ...
Unpacking libjpeg62-turbo:i386 (1:2.1.5-4) ...
Selecting previously unselected package libpng16-16t64:i386.
Preparing to unpack .../025-libpng16-16t64_1.6.48-1+deb13u4_i386.deb ...
Unpacking libpng16-16t64:i386 (1.6.48-1+deb13u4) ...
Selecting previously unselected package libdeflate0:i386.
Preparing to unpack .../026-libdeflate0_1.23-2_i386.deb ...
Unpacking libdeflate0:i386 (1.23-2) ...
Selecting previously unselected package libjbig0:i386.
Preparing to unpack .../027-libjbig0_2.1-6.1+b2_i386.deb ...
Unpacking libjbig0:i386 (2.1-6.1+b2) ...
Selecting previously unselected package liblerc4:i386.
Preparing to unpack .../028-liblerc4_4.0.0+ds-5_i386.deb ...
Unpacking liblerc4:i386 (4.0.0+ds-5) ...
Selecting previously unselected package libsharpyuv0:i386.
Preparing to unpack .../029-libsharpyuv0_1.5.0-0.1_i386.deb ...
Unpacking libsharpyuv0:i386 (1.5.0-0.1) ...
Selecting previously unselected package libwebp7:i386.
Preparing to unpack .../030-libwebp7_1.5.0-0.1_i386.deb ...
Unpacking libwebp7:i386 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:i386.
Preparing to unpack .../031-libtiff6_4.7.0-3+deb13u2_i386.deb ...
Unpacking libtiff6:i386 (4.7.0-3+deb13u2) ...
Selecting previously unselected package libgdk-pixbuf-2.0-0:i386.
Preparing to unpack .../032-libgdk-pixbuf-2.0-0_2.42.12+dfsg-4+deb13u1_i386.deb ...
Unpacking libgdk-pixbuf-2.0-0:i386 (2.42.12+dfsg-4+deb13u1) ...
Selecting previously unselected package gtk-update-icon-cache.
Preparing to unpack .../033-gtk-update-icon-cache_4.18.6+ds-2_i386.deb ...
No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
Unpacking gtk-update-icon-cache (4.18.6+ds-2) ...
Selecting previously unselected package hicolor-icon-theme.
Preparing to unpack .../034-hicolor-icon-theme_0.18-2_all.deb ...
Unpacking hicolor-icon-theme (0.18-2) ...
Selecting previously unselected package adwaita-icon-theme.
Preparing to unpack .../035-adwaita-icon-theme_48.1-1_all.deb ...
Unpacking adwaita-icon-theme (48.1-1) ...
Selecting previously unselected package at-spi2-common.
Preparing to unpack .../036-at-spi2-common_2.56.2-1+deb13u1_all.deb ...
Unpacking at-spi2-common (2.56.2-1+deb13u1) ...
Selecting previously unselected package m4.
Preparing to unpack .../037-m4_1.4.19-8_i386.deb ...
Unpacking m4 (1.4.19-8) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../038-autoconf_2.72-3.1_all.deb ...
Unpacking autoconf (2.72-3.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../039-autotools-dev_20240727.1_all.deb ...
Unpacking autotools-dev (20240727.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../040-automake_1%3a1.17-4_all.deb ...
Unpacking automake (1:1.17-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../041-autopoint_0.23.1-2_all.deb ...
Unpacking autopoint (0.23.1-2) ...
Selecting previously unselected package bison.
Preparing to unpack .../042-bison_2%3a3.8.2+dfsg-1+b2_i386.deb ...
Unpacking bison (2:3.8.2+dfsg-1+b2) ...
Selecting previously unselected package ca-certificates-java.
Preparing to unpack .../043-ca-certificates-java_20240118_all.deb ...
Unpacking ca-certificates-java (20240118) ...
Selecting previously unselected package libcom-err2:i386.
Preparing to unpack .../044-libcom-err2_1.47.2-3+b10_i386.deb ...
Unpacking libcom-err2:i386 (1.47.2-3+b10) ...
Selecting previously unselected package comerr-dev:i386.
Preparing to unpack .../045-comerr-dev_2.1-1.47.2-3+b10_i386.deb ...
Unpacking comerr-dev:i386 (2.1-1.47.2-3+b10) ...
Selecting previously unselected package cpp-14-for-host:i386.
Preparing to unpack .../046-cpp-14-for-host_14.2.0-19_i386.deb ...
Unpacking cpp-14-for-host:i386 (14.2.0-19) ...
Selecting previously unselected package cpp-for-host:i386.
Preparing to unpack .../047-cpp-for-host_4%3a14.2.0-1_i386.deb ...
Unpacking cpp-for-host:i386 (4:14.2.0-1) ...
Selecting previously unselected package dbus-user-session.
Preparing to unpack .../048-dbus-user-session_1.16.2-2_i386.deb ...
Unpacking dbus-user-session (1.16.2-2) ...
Selecting previously unselected package libdconf1:i386.
Preparing to unpack .../049-libdconf1_0.40.0-5_i386.deb ...
Unpacking libdconf1:i386 (0.40.0-5) ...
Selecting previously unselected package dconf-service.
Preparing to unpack .../050-dconf-service_0.40.0-5_i386.deb ...
Unpacking dconf-service (0.40.0-5) ...
Selecting previously unselected package dconf-gsettings-backend:i386.
Preparing to unpack .../051-dconf-gsettings-backend_0.40.0-5_i386.deb ...
Unpacking dconf-gsettings-backend:i386 (0.40.0-5) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../052-libdebhelper-perl_13.24.2_all.deb ...
Unpacking libdebhelper-perl (13.24.2) ...
Selecting previously unselected package libtool.
Preparing to unpack .../053-libtool_2.5.4-4_all.deb ...
Unpacking libtool (2.5.4-4) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../054-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../055-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../056-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../057-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:i386.
Preparing to unpack .../058-libelf1t64_0.192-4_i386.deb ...
Unpacking libelf1t64:i386 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../059-dwz_0.15-1+b1_i386.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:i386.
Preparing to unpack .../060-libunistring5_1.3-2_i386.deb ...
Unpacking libunistring5:i386 (1.3-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../061-gettext_0.23.1-2_i386.deb ...
Unpacking gettext (0.23.1-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../062-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../063-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../064-debhelper_13.24.2_all.deb ...
Unpacking debhelper (13.24.2) ...
Selecting previously unselected package java-common.
Preparing to unpack .../065-java-common_0.76_all.deb ...
Unpacking java-common (0.76) ...
Selecting previously unselected package liblcms2-2:i386.
Preparing to unpack .../066-liblcms2-2_2.16-2_i386.deb ...
Unpacking liblcms2-2:i386 (2.16-2) ...
Selecting previously unselected package libnspr4:i386.
Preparing to unpack .../067-libnspr4_2%3a4.36-1_i386.deb ...
Unpacking libnspr4:i386 (2:4.36-1) ...
Selecting previously unselected package libnss3:i386.
Preparing to unpack .../068-libnss3_2%3a3.110-1+deb13u1_i386.deb ...
Unpacking libnss3:i386 (2:3.110-1+deb13u1) ...
Selecting previously unselected package libpcsclite1:i386.
Preparing to unpack .../069-libpcsclite1_2.3.3-1_i386.deb ...
Unpacking libpcsclite1:i386 (2.3.3-1) ...
Selecting previously unselected package openjdk-21-jre-headless:i386.
Preparing to unpack .../070-openjdk-21-jre-headless_21.0.10+7-1~deb13u1_i386.deb ...
Unpacking openjdk-21-jre-headless:i386 (21.0.10+7-1~deb13u1) ...
Selecting previously unselected package default-jre-headless.
Preparing to unpack .../071-default-jre-headless_2%3a1.21-76_i386.deb ...
Unpacking default-jre-headless (2:1.21-76) ...
Selecting previously unselected package libatk1.0-0t64:i386.
Preparing to unpack .../072-libatk1.0-0t64_2.56.2-1+deb13u1_i386.deb ...
Unpacking libatk1.0-0t64:i386 (2.56.2-1+deb13u1) ...
Selecting previously unselected package libxau6:i386.
Preparing to unpack .../073-libxau6_1%3a1.0.11-1_i386.deb ...
Unpacking libxau6:i386 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:i386.
Preparing to unpack .../074-libxdmcp6_1%3a1.1.5-1_i386.deb ...
Unpacking libxdmcp6:i386 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:i386.
Preparing to unpack .../075-libxcb1_1.17.0-2+b1_i386.deb ...
Unpacking libxcb1:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../076-libx11-data_2%3a1.8.12-1_all.deb ...
Unpacking libx11-data (2:1.8.12-1) ...
Selecting previously unselected package libx11-6:i386.
Preparing to unpack .../077-libx11-6_2%3a1.8.12-1_i386.deb ...
Unpacking libx11-6:i386 (2:1.8.12-1) ...
Selecting previously unselected package libxext6:i386.
Preparing to unpack .../078-libxext6_2%3a1.3.4-1+b3_i386.deb ...
Unpacking libxext6:i386 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxi6:i386.
Preparing to unpack .../079-libxi6_2%3a1.8.2-1_i386.deb ...
Unpacking libxi6:i386 (2:1.8.2-1) ...
Selecting previously unselected package libatspi2.0-0t64:i386.
Preparing to unpack .../080-libatspi2.0-0t64_2.56.2-1+deb13u1_i386.deb ...
Unpacking libatspi2.0-0t64:i386 (2.56.2-1+deb13u1) ...
Selecting previously unselected package libatk-bridge2.0-0t64:i386.
Preparing to unpack .../081-libatk-bridge2.0-0t64_2.56.2-1+deb13u1_i386.deb ...
Unpacking libatk-bridge2.0-0t64:i386 (2.56.2-1+deb13u1) ...
Selecting previously unselected package libbrotli1:i386.
Preparing to unpack .../082-libbrotli1_1.1.0-2+b7_i386.deb ...
Unpacking libbrotli1:i386 (1.1.0-2+b7) ...
Selecting previously unselected package libfreetype6:i386.
Preparing to unpack .../083-libfreetype6_2.13.3+dfsg-1+deb13u1_i386.deb ...
Unpacking libfreetype6:i386 (2.13.3+dfsg-1+deb13u1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../084-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../085-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../086-fontconfig-config_2.15.0-2.3_i386.deb ...
Unpacking fontconfig-config (2.15.0-2.3) ...
Selecting previously unselected package libfontconfig1:i386.
Preparing to unpack .../087-libfontconfig1_2.15.0-2.3_i386.deb ...
Unpacking libfontconfig1:i386 (2.15.0-2.3) ...
Selecting previously unselected package libpixman-1-0:i386.
Preparing to unpack .../088-libpixman-1-0_0.44.0-3_i386.deb ...
Unpacking libpixman-1-0:i386 (0.44.0-3) ...
Selecting previously unselected package libxcb-render0:i386.
Preparing to unpack .../089-libxcb-render0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-render0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:i386.
Preparing to unpack .../090-libxcb-shm0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-shm0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxrender1:i386.
Preparing to unpack .../091-libxrender1_1%3a0.9.12-1_i386.deb ...
Unpacking libxrender1:i386 (1:0.9.12-1) ...
Selecting previously unselected package libcairo2:i386.
Preparing to unpack .../092-libcairo2_1.18.4-1+b1_i386.deb ...
Unpacking libcairo2:i386 (1.18.4-1+b1) ...
Selecting previously unselected package libcairo-gobject2:i386.
Preparing to unpack .../093-libcairo-gobject2_1.18.4-1+b1_i386.deb ...
Unpacking libcairo-gobject2:i386 (1.18.4-1+b1) ...
Selecting previously unselected package libcloudproviders0:i386.
Preparing to unpack .../094-libcloudproviders0_0.3.6-2_i386.deb ...
Unpacking libcloudproviders0:i386 (0.3.6-2) ...
Selecting previously unselected package libcolord2:i386.
Preparing to unpack .../095-libcolord2_1.4.7-3_i386.deb ...
Unpacking libcolord2:i386 (1.4.7-3) ...
Selecting previously unselected package libavahi-common-data:i386.
Preparing to unpack .../096-libavahi-common-data_0.8-16_i386.deb ...
Unpacking libavahi-common-data:i386 (0.8-16) ...
Selecting previously unselected package libavahi-common3:i386.
Preparing to unpack .../097-libavahi-common3_0.8-16_i386.deb ...
Unpacking libavahi-common3:i386 (0.8-16) ...
Selecting previously unselected package libavahi-client3:i386.
Preparing to unpack .../098-libavahi-client3_0.8-16_i386.deb ...
Unpacking libavahi-client3:i386 (0.8-16) ...
Selecting previously unselected package libidn2-0:i386.
Preparing to unpack .../099-libidn2-0_2.3.8-2_i386.deb ...
Unpacking libidn2-0:i386 (2.3.8-2) ...
Selecting previously unselected package libp11-kit0:i386.
Preparing to unpack .../100-libp11-kit0_0.25.5-3_i386.deb ...
Unpacking libp11-kit0:i386 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:i386.
Preparing to unpack .../101-libtasn1-6_4.20.0-2_i386.deb ...
Unpacking libtasn1-6:i386 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:i386.
Preparing to unpack .../102-libgnutls30t64_3.8.9-3+deb13u2_i386.deb ...
Unpacking libgnutls30t64:i386 (3.8.9-3+deb13u2) ...
Selecting previously unselected package libkrb5support0:i386.
Preparing to unpack .../103-libkrb5support0_1.21.3-5_i386.deb ...
Unpacking libkrb5support0:i386 (1.21.3-5) ...
Selecting previously unselected package libk5crypto3:i386.
Preparing to unpack .../104-libk5crypto3_1.21.3-5_i386.deb ...
Unpacking libk5crypto3:i386 (1.21.3-5) ...
Selecting previously unselected package libkeyutils1:i386.
Preparing to unpack .../105-libkeyutils1_1.6.3-6_i386.deb ...
Unpacking libkeyutils1:i386 (1.6.3-6) ...
Selecting previously unselected package libkrb5-3:i386.
Preparing to unpack .../106-libkrb5-3_1.21.3-5_i386.deb ...
Unpacking libkrb5-3:i386 (1.21.3-5) ...
Selecting previously unselected package libgssapi-krb5-2:i386.
Preparing to unpack .../107-libgssapi-krb5-2_1.21.3-5_i386.deb ...
Unpacking libgssapi-krb5-2:i386 (1.21.3-5) ...
Selecting previously unselected package libcups2t64:i386.
Preparing to unpack .../108-libcups2t64_2.4.10-3+deb13u2_i386.deb ...
Unpacking libcups2t64:i386 (2.4.10-3+deb13u2) ...
Selecting previously unselected package libepoxy0:i386.
Preparing to unpack .../109-libepoxy0_1.5.10-2_i386.deb ...
Unpacking libepoxy0:i386 (1.5.10-2) ...
Selecting previously unselected package libfribidi0:i386.
Preparing to unpack .../110-libfribidi0_1.0.16-1_i386.deb ...
Unpacking libfribidi0:i386 (1.0.16-1) ...
Selecting previously unselected package libgraphite2-3:i386.
Preparing to unpack .../111-libgraphite2-3_1.3.14-2+b1_i386.deb ...
Unpacking libgraphite2-3:i386 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:i386.
Preparing to unpack .../112-libharfbuzz0b_10.2.0-1+b1_i386.deb ...
Unpacking libharfbuzz0b:i386 (10.2.0-1+b1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../113-fontconfig_2.15.0-2.3_i386.deb ...
Unpacking fontconfig (2.15.0-2.3) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libdatrie1:i386.
Preparing to unpack .../115-libdatrie1_0.2.13-3+b1_i386.deb ...
Unpacking libdatrie1:i386 (0.2.13-3+b1) ...
Selecting previously unselected package libthai0:i386.
Preparing to unpack .../116-libthai0_0.1.29-2+b1_i386.deb ...
Unpacking libthai0:i386 (0.1.29-2+b1) ...
Selecting previously unselected package libpango-1.0-0:i386.
Preparing to unpack .../117-libpango-1.0-0_1.56.3-1_i386.deb ...
Unpacking libpango-1.0-0:i386 (1.56.3-1) ...
Selecting previously unselected package libpangoft2-1.0-0:i386.
Preparing to unpack .../118-libpangoft2-1.0-0_1.56.3-1_i386.deb ...
Unpacking libpangoft2-1.0-0:i386 (1.56.3-1) ...
Selecting previously unselected package libpangocairo-1.0-0:i386.
Preparing to unpack .../119-libpangocairo-1.0-0_1.56.3-1_i386.deb ...
Unpacking libpangocairo-1.0-0:i386 (1.56.3-1) ...
Selecting previously unselected package libwayland-client0:i386.
Preparing to unpack .../120-libwayland-client0_1.23.1-3_i386.deb ...
Unpacking libwayland-client0:i386 (1.23.1-3) ...
Selecting previously unselected package libwayland-cursor0:i386.
Preparing to unpack .../121-libwayland-cursor0_1.23.1-3_i386.deb ...
Unpacking libwayland-cursor0:i386 (1.23.1-3) ...
Selecting previously unselected package libwayland-egl1:i386.
Preparing to unpack .../122-libwayland-egl1_1.23.1-3_i386.deb ...
Unpacking libwayland-egl1:i386 (1.23.1-3) ...
Selecting previously unselected package libxcomposite1:i386.
Preparing to unpack .../123-libxcomposite1_1%3a0.4.6-1_i386.deb ...
Unpacking libxcomposite1:i386 (1:0.4.6-1) ...
Selecting previously unselected package libxfixes3:i386.
Preparing to unpack .../124-libxfixes3_1%3a6.0.0-2+b4_i386.deb ...
Unpacking libxfixes3:i386 (1:6.0.0-2+b4) ...
Selecting previously unselected package libxcursor1:i386.
Preparing to unpack .../125-libxcursor1_1%3a1.2.3-1_i386.deb ...
Unpacking libxcursor1:i386 (1:1.2.3-1) ...
Selecting previously unselected package libxdamage1:i386.
Preparing to unpack .../126-libxdamage1_1%3a1.1.6-1+b2_i386.deb ...
Unpacking libxdamage1:i386 (1:1.1.6-1+b2) ...
Selecting previously unselected package libxinerama1:i386.
Preparing to unpack .../127-libxinerama1_2%3a1.1.4-3+b4_i386.deb ...
Unpacking libxinerama1:i386 (2:1.1.4-3+b4) ...
Selecting previously unselected package xkb-data.
Preparing to unpack .../128-xkb-data_2.42-1_all.deb ...
Unpacking xkb-data (2.42-1) ...
Selecting previously unselected package libxkbcommon0:i386.
Preparing to unpack .../129-libxkbcommon0_1.7.0-2_i386.deb ...
Unpacking libxkbcommon0:i386 (1.7.0-2) ...
Selecting previously unselected package libxrandr2:i386.
Preparing to unpack .../130-libxrandr2_2%3a1.5.4-1+b3_i386.deb ...
Unpacking libxrandr2:i386 (2:1.5.4-1+b3) ...
Selecting previously unselected package libgtk-3-common.
Preparing to unpack .../131-libgtk-3-common_3.24.49-3_all.deb ...
Unpacking libgtk-3-common (3.24.49-3) ...
Selecting previously unselected package libgtk-3-0t64:i386.
Preparing to unpack .../132-libgtk-3-0t64_3.24.49-3_i386.deb ...
Unpacking libgtk-3-0t64:i386 (3.24.49-3) ...
Selecting previously unselected package libglvnd0:i386.
Preparing to unpack .../133-libglvnd0_1.7.0-1+b2_i386.deb ...
Unpacking libglvnd0:i386 (1.7.0-1+b2) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../134-libdrm-common_2.4.124-2_all.deb ...
Unpacking libdrm-common (2.4.124-2) ...
Selecting previously unselected package libdrm2:i386.
Preparing to unpack .../135-libdrm2_2.4.124-2_i386.deb ...
Unpacking libdrm2:i386 (2.4.124-2) ...
Selecting previously unselected package libx11-xcb1:i386.
Preparing to unpack .../136-libx11-xcb1_2%3a1.8.12-1_i386.deb ...
Unpacking libx11-xcb1:i386 (2:1.8.12-1) ...
Selecting previously unselected package libxcb-dri3-0:i386.
Preparing to unpack .../137-libxcb-dri3-0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-dri3-0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-glx0:i386.
Preparing to unpack .../138-libxcb-glx0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-glx0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-present0:i386.
Preparing to unpack .../139-libxcb-present0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-present0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-xfixes0:i386.
Preparing to unpack .../140-libxcb-xfixes0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-xfixes0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxxf86vm1:i386.
Preparing to unpack .../141-libxxf86vm1_1%3a1.1.4-1+b4_i386.deb ...
Unpacking libxxf86vm1:i386 (1:1.1.4-1+b4) ...
Selecting previously unselected package libdrm-amdgpu1:i386.
Preparing to unpack .../142-libdrm-amdgpu1_2.4.124-2_i386.deb ...
Unpacking libdrm-amdgpu1:i386 (2.4.124-2) ...
Selecting previously unselected package libpciaccess0:i386.
Preparing to unpack .../143-libpciaccess0_0.17-3+b3_i386.deb ...
Unpacking libpciaccess0:i386 (0.17-3+b3) ...
Selecting previously unselected package libdrm-intel1:i386.
Preparing to unpack .../144-libdrm-intel1_2.4.124-2_i386.deb ...
Unpacking libdrm-intel1:i386 (2.4.124-2) ...
Selecting previously unselected package libedit2:i386.
Preparing to unpack .../145-libedit2_3.1-20250104-1_i386.deb ...
Unpacking libedit2:i386 (3.1-20250104-1) ...
Selecting previously unselected package libz3-4:i386.
Preparing to unpack .../146-libz3-4_4.13.3-1_i386.deb ...
Unpacking libz3-4:i386 (4.13.3-1) ...
Selecting previously unselected package libllvm19:i386.
Preparing to unpack .../147-libllvm19_1%3a19.1.7-3+b1_i386.deb ...
Unpacking libllvm19:i386 (1:19.1.7-3+b1) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../148-libsensors-config_1%3a3.6.2-2_all.deb ...
Unpacking libsensors-config (1:3.6.2-2) ...
Selecting previously unselected package libsensors5:i386.
Preparing to unpack .../149-libsensors5_1%3a3.6.2-2_i386.deb ...
Unpacking libsensors5:i386 (1:3.6.2-2) ...
Selecting previously unselected package libxcb-randr0:i386.
Preparing to unpack .../150-libxcb-randr0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-randr0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-sync1:i386.
Preparing to unpack .../151-libxcb-sync1_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-sync1:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxshmfence1:i386.
Preparing to unpack .../152-libxshmfence1_1.3.3-1_i386.deb ...
Unpacking libxshmfence1:i386 (1.3.3-1) ...
Selecting previously unselected package mesa-libgallium:i386.
Preparing to unpack .../153-mesa-libgallium_25.0.7-2_i386.deb ...
Unpacking mesa-libgallium:i386 (25.0.7-2) ...
Selecting previously unselected package libwayland-server0:i386.
Preparing to unpack .../154-libwayland-server0_1.23.1-3_i386.deb ...
Unpacking libwayland-server0:i386 (1.23.1-3) ...
Selecting previously unselected package libgbm1:i386.
Preparing to unpack .../155-libgbm1_25.0.7-2_i386.deb ...
Unpacking libgbm1:i386 (25.0.7-2) ...
Selecting previously unselected package libvulkan1:i386.
Preparing to unpack .../156-libvulkan1_1.4.309.0-1_i386.deb ...
Unpacking libvulkan1:i386 (1.4.309.0-1) ...
Selecting previously unselected package libgl1-mesa-dri:i386.
Preparing to unpack .../157-libgl1-mesa-dri_25.0.7-2_i386.deb ...
Unpacking libgl1-mesa-dri:i386 (25.0.7-2) ...
Selecting previously unselected package libglx-mesa0:i386.
Preparing to unpack .../158-libglx-mesa0_25.0.7-2_i386.deb ...
Unpacking libglx-mesa0:i386 (25.0.7-2) ...
Selecting previously unselected package libglx0:i386.
Preparing to unpack .../159-libglx0_1.7.0-1+b2_i386.deb ...
Unpacking libglx0:i386 (1.7.0-1+b2) ...
Selecting previously unselected package libgl1:i386.
Preparing to unpack .../160-libgl1_1.7.0-1+b2_i386.deb ...
Unpacking libgl1:i386 (1.7.0-1+b2) ...
Selecting previously unselected package libasound2-data.
Preparing to unpack .../161-libasound2-data_1.2.14-1_all.deb ...
Unpacking libasound2-data (1.2.14-1) ...
Selecting previously unselected package libasound2t64:i386.
Preparing to unpack .../162-libasound2t64_1.2.14-1_i386.deb ...
Unpacking libasound2t64:i386 (1.2.14-1) ...
Selecting previously unselected package libgif7:i386.
Preparing to unpack .../163-libgif7_5.2.2-1+b1_i386.deb ...
Unpacking libgif7:i386 (5.2.2-1+b1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../164-x11-common_1%3a7.7+24+deb13u1_all.deb ...
Unpacking x11-common (1:7.7+24+deb13u1) ...
Selecting previously unselected package libxtst6:i386.
Preparing to unpack .../165-libxtst6_2%3a1.2.5-1_i386.deb ...
Unpacking libxtst6:i386 (2:1.2.5-1) ...
Selecting previously unselected package openjdk-21-jre:i386.
Preparing to unpack .../166-openjdk-21-jre_21.0.10+7-1~deb13u1_i386.deb ...
Unpacking openjdk-21-jre:i386 (21.0.10+7-1~deb13u1) ...
Selecting previously unselected package default-jre.
Preparing to unpack .../167-default-jre_2%3a1.21-76_i386.deb ...
Unpacking default-jre (2:1.21-76) ...
Selecting previously unselected package openjdk-21-jdk-headless:i386.
Preparing to unpack .../168-openjdk-21-jdk-headless_21.0.10+7-1~deb13u1_i386.deb ...
Unpacking openjdk-21-jdk-headless:i386 (21.0.10+7-1~deb13u1) ...
Selecting previously unselected package default-jdk-headless.
Preparing to unpack .../169-default-jdk-headless_2%3a1.21-76_i386.deb ...
Unpacking default-jdk-headless (2:1.21-76) ...
Selecting previously unselected package openjdk-21-jdk:i386.
Preparing to unpack .../170-openjdk-21-jdk_21.0.10+7-1~deb13u1_i386.deb ...
Unpacking openjdk-21-jdk:i386 (21.0.10+7-1~deb13u1) ...
Selecting previously unselected package default-jdk.
Preparing to unpack .../171-default-jdk_2%3a1.21-76_i386.deb ...
Unpacking default-jdk (2:1.21-76) ...
Selecting previously unselected package fonts-lmodern.
Preparing to unpack .../172-fonts-lmodern_2.005-1_all.deb ...
Unpacking fonts-lmodern (2.005-1) ...
Selecting previously unselected package gcc-14-for-host:i386.
Preparing to unpack .../173-gcc-14-for-host_14.2.0-19_i386.deb ...
Unpacking gcc-14-for-host:i386 (14.2.0-19) ...
Selecting previously unselected package gcc-for-host:i386.
Preparing to unpack .../174-gcc-for-host_4%3a14.2.0-1_i386.deb ...
Unpacking gcc-for-host:i386 (4:14.2.0-1) ...
Selecting previously unselected package libgfortran5:i386.
Preparing to unpack .../175-libgfortran5_14.2.0-19_i386.deb ...
Unpacking libgfortran5:i386 (14.2.0-19) ...
Selecting previously unselected package libgfortran-14-dev:i386.
Preparing to unpack .../176-libgfortran-14-dev_14.2.0-19_i386.deb ...
Unpacking libgfortran-14-dev:i386 (14.2.0-19) ...
Selecting previously unselected package gfortran-14-i686-linux-gnu.
Preparing to unpack .../177-gfortran-14-i686-linux-gnu_14.2.0-19_i386.deb ...
Unpacking gfortran-14-i686-linux-gnu (14.2.0-19) ...
Selecting previously unselected package gfortran-14-for-host:i386.
Preparing to unpack .../178-gfortran-14-for-host_14.2.0-19_i386.deb ...
Unpacking gfortran-14-for-host:i386 (14.2.0-19) ...
Selecting previously unselected package gfortran-i686-linux-gnu.
Preparing to unpack .../179-gfortran-i686-linux-gnu_4%3a14.2.0-1_i386.deb ...
Unpacking gfortran-i686-linux-gnu (4:14.2.0-1) ...
Selecting previously unselected package gfortran-for-host:i386.
Preparing to unpack .../180-gfortran-for-host_4%3a14.2.0-1_i386.deb ...
Unpacking gfortran-for-host:i386 (4:14.2.0-1) ...
Selecting previously unselected package gir1.2-glib-2.0:i386.
Preparing to unpack .../181-gir1.2-glib-2.0_2.84.4-3~deb13u2_i386.deb ...
Unpacking gir1.2-glib-2.0:i386 (2.84.4-3~deb13u2) ...
Selecting previously unselected package gir1.2-freedesktop:i386.
Preparing to unpack .../182-gir1.2-freedesktop_1.84.0-1_i386.deb ...
Unpacking gir1.2-freedesktop:i386 (1.84.0-1) ...
Selecting previously unselected package gir1.2-glib-2.0-dev:i386.
Preparing to unpack .../183-gir1.2-glib-2.0-dev_2.84.4-3~deb13u2_i386.deb ...
Unpacking gir1.2-glib-2.0-dev:i386 (2.84.4-3~deb13u2) ...
Selecting previously unselected package gir1.2-freedesktop-dev:i386.
Preparing to unpack .../184-gir1.2-freedesktop-dev_1.84.0-1_i386.deb ...
Unpacking gir1.2-freedesktop-dev:i386 (1.84.0-1) ...
Selecting previously unselected package libharfbuzz-gobject0:i386.
Preparing to unpack .../185-libharfbuzz-gobject0_10.2.0-1+b1_i386.deb ...
Unpacking libharfbuzz-gobject0:i386 (10.2.0-1+b1) ...
Selecting previously unselected package gir1.2-harfbuzz-0.0:i386.
Preparing to unpack .../186-gir1.2-harfbuzz-0.0_10.2.0-1+b1_i386.deb ...
Unpacking gir1.2-harfbuzz-0.0:i386 (10.2.0-1+b1) ...
Selecting previously unselected package libxft2:i386.
Preparing to unpack .../187-libxft2_2.3.6-1+b4_i386.deb ...
Unpacking libxft2:i386 (2.3.6-1+b4) ...
Selecting previously unselected package libpangoxft-1.0-0:i386.
Preparing to unpack .../188-libpangoxft-1.0-0_1.56.3-1_i386.deb ...
Unpacking libpangoxft-1.0-0:i386 (1.56.3-1) ...
Selecting previously unselected package gir1.2-pango-1.0:i386.
Preparing to unpack .../189-gir1.2-pango-1.0_1.56.3-1_i386.deb ...
Unpacking gir1.2-pango-1.0:i386 (1.56.3-1) ...
Selecting previously unselected package native-architecture.
Preparing to unpack .../190-native-architecture_0.2.6_all.deb ...
Unpacking native-architecture (0.2.6) ...
Selecting previously unselected package libgirepository-2.0-0:i386.
Preparing to unpack .../191-libgirepository-2.0-0_2.84.4-3~deb13u2_i386.deb ...
Unpacking libgirepository-2.0-0:i386 (2.84.4-3~deb13u2) ...
Selecting previously unselected package girepository-tools:i386.
Preparing to unpack .../192-girepository-tools_2.84.4-3~deb13u2_i386.deb ...
Unpacking girepository-tools:i386 (2.84.4-3~deb13u2) ...
Selecting previously unselected package libicu76:i386.
Preparing to unpack .../193-libicu76_76.1-4_i386.deb ...
Unpacking libicu76:i386 (76.1-4) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../194-icu-devtools_76.1-4_i386.deb ...
Unpacking icu-devtools (76.1-4) ...
Selecting previously unselected package libgssrpc4t64:i386.
Preparing to unpack .../195-libgssrpc4t64_1.21.3-5_i386.deb ...
Unpacking libgssrpc4t64:i386 (1.21.3-5) ...
Selecting previously unselected package libkadm5clnt-mit12:i386.
Preparing to unpack .../196-libkadm5clnt-mit12_1.21.3-5_i386.deb ...
Unpacking libkadm5clnt-mit12:i386 (1.21.3-5) ...
Selecting previously unselected package libkdb5-10t64:i386.
Preparing to unpack .../197-libkdb5-10t64_1.21.3-5_i386.deb ...
Unpacking libkdb5-10t64:i386 (1.21.3-5) ...
Selecting previously unselected package libkadm5srv-mit12:i386.
Preparing to unpack .../198-libkadm5srv-mit12_1.21.3-5_i386.deb ...
Unpacking libkadm5srv-mit12:i386 (1.21.3-5) ...
Selecting previously unselected package krb5-multidev:i386.
Preparing to unpack .../199-krb5-multidev_1.21.3-5_i386.deb ...
Unpacking krb5-multidev:i386 (1.21.3-5) ...
Selecting previously unselected package libapache-pom-java.
Preparing to unpack .../200-libapache-pom-java_33-2_all.deb ...
Unpacking libapache-pom-java (33-2) ...
Selecting previously unselected package libblas3:i386.
Preparing to unpack .../201-libblas3_3.12.1-6_i386.deb ...
Unpacking libblas3:i386 (3.12.1-6) ...
Selecting previously unselected package libblas-dev:i386.
Preparing to unpack .../202-libblas-dev_3.12.1-6_i386.deb ...
Unpacking libblas-dev:i386 (3.12.1-6) ...
Selecting previously unselected package uuid-dev:i386.
Preparing to unpack .../203-uuid-dev_2.41-5_i386.deb ...
Unpacking uuid-dev:i386 (2.41-5) ...
Selecting previously unselected package libblkid-dev:i386.
Preparing to unpack .../204-libblkid-dev_2.41-5_i386.deb ...
Unpacking libblkid-dev:i386 (2.41-5) ...
Selecting previously unselected package libbrotli-dev:i386.
Preparing to unpack .../205-libbrotli-dev_1.1.0-2+b7_i386.deb ...
Unpacking libbrotli-dev:i386 (1.1.0-2+b7) ...
Selecting previously unselected package libbz2-dev:i386.
Preparing to unpack .../206-libbz2-dev_1.0.8-6_i386.deb ...
Unpacking libbz2-dev:i386 (1.0.8-6) ...
Selecting previously unselected package liblzo2-2:i386.
Preparing to unpack .../207-liblzo2-2_2.10-3+b1_i386.deb ...
Unpacking liblzo2-2:i386 (2.10-3+b1) ...
Selecting previously unselected package libcairo-script-interpreter2:i386.
Preparing to unpack .../208-libcairo-script-interpreter2_1.18.4-1+b1_i386.deb ...
Unpacking libcairo-script-interpreter2:i386 (1.18.4-1+b1) ...
Selecting previously unselected package libexpat1-dev:i386.
Preparing to unpack .../209-libexpat1-dev_2.7.1-2_i386.deb ...
Unpacking libexpat1-dev:i386 (2.7.1-2) ...
Selecting previously unselected package zlib1g-dev:i386.
Preparing to unpack .../210-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ...
Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package libpng-dev:i386.
Preparing to unpack .../211-libpng-dev_1.6.48-1+deb13u4_i386.deb ...
Unpacking libpng-dev:i386 (1.6.48-1+deb13u4) ...
Selecting previously unselected package libfreetype-dev:i386.
Preparing to unpack .../212-libfreetype-dev_2.13.3+dfsg-1+deb13u1_i386.deb ...
Unpacking libfreetype-dev:i386 (2.13.3+dfsg-1+deb13u1) ...
Selecting previously unselected package libpkgconf3:i386.
Preparing to unpack .../213-libpkgconf3_1.8.1-4_i386.deb ...
Unpacking libpkgconf3:i386 (1.8.1-4) ...
Selecting previously unselected package pkgconf-bin.
Preparing to unpack .../214-pkgconf-bin_1.8.1-4_i386.deb ...
Unpacking pkgconf-bin (1.8.1-4) ...
Selecting previously unselected package pkgconf:i386.
Preparing to unpack .../215-pkgconf_1.8.1-4_i386.deb ...
Unpacking pkgconf:i386 (1.8.1-4) ...
Selecting previously unselected package libfontconfig-dev:i386.
Preparing to unpack .../216-libfontconfig-dev_2.15.0-2.3_i386.deb ...
Unpacking libfontconfig-dev:i386 (2.15.0-2.3) ...
Selecting previously unselected package libffi-dev:i386.
Preparing to unpack .../217-libffi-dev_3.4.8-2_i386.deb ...
Unpacking libffi-dev:i386 (3.4.8-2) ...
Selecting previously unselected package libsepol-dev:i386.
Preparing to unpack .../218-libsepol-dev_3.8.1-1_i386.deb ...
Unpacking libsepol-dev:i386 (3.8.1-1) ...
Selecting previously unselected package libpcre2-16-0:i386.
Preparing to unpack .../219-libpcre2-16-0_10.46-1~deb13u1_i386.deb ...
Unpacking libpcre2-16-0:i386 (10.46-1~deb13u1) ...
Selecting previously unselected package libpcre2-32-0:i386.
Preparing to unpack .../220-libpcre2-32-0_10.46-1~deb13u1_i386.deb ...
Unpacking libpcre2-32-0:i386 (10.46-1~deb13u1) ...
Selecting previously unselected package libpcre2-posix3:i386.
Preparing to unpack .../221-libpcre2-posix3_10.46-1~deb13u1_i386.deb ...
Unpacking libpcre2-posix3:i386 (10.46-1~deb13u1) ...
Selecting previously unselected package libpcre2-dev:i386.
Preparing to unpack .../222-libpcre2-dev_10.46-1~deb13u1_i386.deb ...
Unpacking libpcre2-dev:i386 (10.46-1~deb13u1) ...
Selecting previously unselected package libselinux1-dev:i386.
Preparing to unpack .../223-libselinux1-dev_3.8.1-1_i386.deb ...
Unpacking libselinux1-dev:i386 (3.8.1-1) ...
Selecting previously unselected package libmount-dev:i386.
Preparing to unpack .../224-libmount-dev_2.41-5_i386.deb ...
Unpacking libmount-dev:i386 (2.41-5) ...
Selecting previously unselected package libsysprof-capture-4-dev:i386.
Preparing to unpack .../225-libsysprof-capture-4-dev_48.0-2_i386.deb ...
Unpacking libsysprof-capture-4-dev:i386 (48.0-2) ...
Selecting previously unselected package libgio-2.0-dev:i386.
Preparing to unpack .../226-libgio-2.0-dev_2.84.4-3~deb13u2_i386.deb ...
Unpacking libgio-2.0-dev:i386 (2.84.4-3~deb13u2) ...
Selecting previously unselected package libglib2.0-data.
Preparing to unpack .../227-libglib2.0-data_2.84.4-3~deb13u2_all.deb ...
Unpacking libglib2.0-data (2.84.4-3~deb13u2) ...
Selecting previously unselected package libglib2.0-bin.
Preparing to unpack .../228-libglib2.0-bin_2.84.4-3~deb13u2_i386.deb ...
Unpacking libglib2.0-bin (2.84.4-3~deb13u2) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../229-python3-packaging_25.0-1_all.deb ...
Unpacking python3-packaging (25.0-1) ...
Selecting previously unselected package libgio-2.0-dev-bin.
Preparing to unpack .../230-libgio-2.0-dev-bin_2.84.4-3~deb13u2_i386.deb ...
Unpacking libgio-2.0-dev-bin (2.84.4-3~deb13u2) ...
Selecting previously unselected package libglib2.0-dev-bin.
Preparing to unpack .../231-libglib2.0-dev-bin_2.84.4-3~deb13u2_i386.deb ...
Unpacking libglib2.0-dev-bin (2.84.4-3~deb13u2) ...
Selecting previously unselected package libglib2.0-dev:i386.
Preparing to unpack .../232-libglib2.0-dev_2.84.4-3~deb13u2_i386.deb ...
Unpacking libglib2.0-dev:i386 (2.84.4-3~deb13u2) ...
Selecting previously unselected package libpixman-1-dev:i386.
Preparing to unpack .../233-libpixman-1-dev_0.44.0-3_i386.deb ...
Unpacking libpixman-1-dev:i386 (0.44.0-3) ...
Selecting previously unselected package libice6:i386.
Preparing to unpack .../234-libice6_2%3a1.1.1-1_i386.deb ...
Unpacking libice6:i386 (2:1.1.1-1) ...
Selecting previously unselected package libsm6:i386.
Preparing to unpack .../235-libsm6_2%3a1.2.6-1_i386.deb ...
Unpacking libsm6:i386 (2:1.2.6-1) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../236-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../237-x11proto-dev_2024.1-1_all.deb ...
Unpacking x11proto-dev (2024.1-1) ...
Selecting previously unselected package libice-dev:i386.
Preparing to unpack .../238-libice-dev_2%3a1.1.1-1_i386.deb ...
Unpacking libice-dev:i386 (2:1.1.1-1) ...
Selecting previously unselected package libsm-dev:i386.
Preparing to unpack .../239-libsm-dev_2%3a1.2.6-1_i386.deb ...
Unpacking libsm-dev:i386 (2:1.2.6-1) ...
Selecting previously unselected package libxau-dev:i386.
Preparing to unpack .../240-libxau-dev_1%3a1.0.11-1_i386.deb ...
Unpacking libxau-dev:i386 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp-dev:i386.
Preparing to unpack .../241-libxdmcp-dev_1%3a1.1.5-1_i386.deb ...
Unpacking libxdmcp-dev:i386 (1:1.1.5-1) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../242-xtrans-dev_1.4.0-1_all.deb ...
Unpacking xtrans-dev (1.4.0-1) ...
Selecting previously unselected package libxcb1-dev:i386.
Preparing to unpack .../243-libxcb1-dev_1.17.0-2+b1_i386.deb ...
Unpacking libxcb1-dev:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-dev:i386.
Preparing to unpack .../244-libx11-dev_2%3a1.8.12-1_i386.deb ...
Unpacking libx11-dev:i386 (2:1.8.12-1) ...
Selecting previously unselected package libxcb-render0-dev:i386.
Preparing to unpack .../245-libxcb-render0-dev_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-render0-dev:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0-dev:i386.
Preparing to unpack .../246-libxcb-shm0-dev_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-shm0-dev:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxext-dev:i386.
Preparing to unpack .../247-libxext-dev_2%3a1.3.4-1+b3_i386.deb ...
Unpacking libxext-dev:i386 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxrender-dev:i386.
Preparing to unpack .../248-libxrender-dev_1%3a0.9.12-1_i386.deb ...
Unpacking libxrender-dev:i386 (1:0.9.12-1) ...
Selecting previously unselected package libcairo2-dev:i386.
Preparing to unpack .../249-libcairo2-dev_1.18.4-1+b1_i386.deb ...
Unpacking libcairo2-dev:i386 (1.18.4-1+b1) ...
Selecting previously unselected package libcommons-parent-java.
Preparing to unpack .../250-libcommons-parent-java_56-1_all.deb ...
Unpacking libcommons-parent-java (56-1) ...
Selecting previously unselected package libcommons-logging-java.
Preparing to unpack .../251-libcommons-logging-java_1.3.0-2_all.deb ...
Unpacking libcommons-logging-java (1.3.0-2) ...
Selecting previously unselected package libsasl2-modules-db:i386.
Preparing to unpack .../252-libsasl2-modules-db_2.1.28+dfsg1-9_i386.deb ...
Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-9) ...
Selecting previously unselected package libsasl2-2:i386.
Preparing to unpack .../253-libsasl2-2_2.1.28+dfsg1-9_i386.deb ...
Unpacking libsasl2-2:i386 (2.1.28+dfsg1-9) ...
Selecting previously unselected package libldap2:i386.
Preparing to unpack .../254-libldap2_2.6.10+dfsg-1_i386.deb ...
Unpacking libldap2:i386 (2.6.10+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:i386.
Preparing to unpack .../255-libnghttp2-14_1.64.0-1.1_i386.deb ...
Unpacking libnghttp2-14:i386 (1.64.0-1.1) ...
Selecting previously unselected package libnghttp3-9:i386.
Preparing to unpack .../256-libnghttp3-9_1.8.0-1_i386.deb ...
Unpacking libnghttp3-9:i386 (1.8.0-1) ...
Selecting previously unselected package libpsl5t64:i386.
Preparing to unpack .../257-libpsl5t64_0.21.2-1.1+b1_i386.deb ...
Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ...
Selecting previously unselected package librtmp1:i386.
Preparing to unpack .../258-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ...
Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:i386.
Preparing to unpack .../259-libssh2-1t64_1.11.1-1_i386.deb ...
Unpacking libssh2-1t64:i386 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:i386.
Preparing to unpack .../260-libcurl4t64_8.14.1-2+deb13u2_i386.deb ...
Unpacking libcurl4t64:i386 (8.14.1-2+deb13u2) ...
Selecting previously unselected package libidn2-dev:i386.
Preparing to unpack .../261-libidn2-dev_2.3.8-2_i386.deb ...
Unpacking libidn2-dev:i386 (2.3.8-2) ...
Selecting previously unselected package libkrb5-dev:i386.
Preparing to unpack .../262-libkrb5-dev_1.21.3-5_i386.deb ...
Unpacking libkrb5-dev:i386 (1.21.3-5) ...
Selecting previously unselected package libldap-dev:i386.
Preparing to unpack .../263-libldap-dev_2.6.10+dfsg-1_i386.deb ...
Unpacking libldap-dev:i386 (2.6.10+dfsg-1) ...
Selecting previously unselected package libnghttp2-dev:i386.
Preparing to unpack .../264-libnghttp2-dev_1.64.0-1.1_i386.deb ...
Unpacking libnghttp2-dev:i386 (1.64.0-1.1) ...
Selecting previously unselected package libnghttp3-dev:i386.
Preparing to unpack .../265-libnghttp3-dev_1.8.0-1_i386.deb ...
Unpacking libnghttp3-dev:i386 (1.8.0-1) ...
Selecting previously unselected package libpsl-dev:i386.
Preparing to unpack .../266-libpsl-dev_0.21.2-1.1+b1_i386.deb ...
Unpacking libpsl-dev:i386 (0.21.2-1.1+b1) ...
Selecting previously unselected package libgmpxx4ldbl:i386.
Preparing to unpack .../267-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_i386.deb ...
Unpacking libgmpxx4ldbl:i386 (2:6.3.0+dfsg-3) ...
Selecting previously unselected package libgmp-dev:i386.
Preparing to unpack .../268-libgmp-dev_2%3a6.3.0+dfsg-3_i386.deb ...
Unpacking libgmp-dev:i386 (2:6.3.0+dfsg-3) ...
Selecting previously unselected package libevent-2.1-7t64:i386.
Preparing to unpack .../269-libevent-2.1-7t64_2.1.12-stable-10+b1_i386.deb ...
Unpacking libevent-2.1-7t64:i386 (2.1.12-stable-10+b1) ...
Selecting previously unselected package libunbound8:i386.
Preparing to unpack .../270-libunbound8_1.22.0-2+deb13u1_i386.deb ...
Unpacking libunbound8:i386 (1.22.0-2+deb13u1) ...
Selecting previously unselected package libgnutls-dane0t64:i386.
Preparing to unpack .../271-libgnutls-dane0t64_3.8.9-3+deb13u2_i386.deb ...
Unpacking libgnutls-dane0t64:i386 (3.8.9-3+deb13u2) ...
Selecting previously unselected package libgnutls-openssl27t64:i386.
Preparing to unpack .../272-libgnutls-openssl27t64_3.8.9-3+deb13u2_i386.deb ...
Unpacking libgnutls-openssl27t64:i386 (3.8.9-3+deb13u2) ...
Selecting previously unselected package libp11-kit-dev:i386.
Preparing to unpack .../273-libp11-kit-dev_0.25.5-3_i386.deb ...
Unpacking libp11-kit-dev:i386 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6-dev:i386.
Preparing to unpack .../274-libtasn1-6-dev_4.20.0-2_i386.deb ...
Unpacking libtasn1-6-dev:i386 (4.20.0-2) ...
Selecting previously unselected package nettle-dev:i386.
Preparing to unpack .../275-nettle-dev_3.10.1-1_i386.deb ...
Unpacking nettle-dev:i386 (3.10.1-1) ...
Selecting previously unselected package libgnutls28-dev:i386.
Preparing to unpack .../276-libgnutls28-dev_3.8.9-3+deb13u2_i386.deb ...
Unpacking libgnutls28-dev:i386 (3.8.9-3+deb13u2) ...
Selecting previously unselected package librtmp-dev:i386.
Preparing to unpack .../277-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ...
Unpacking librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssl-dev:i386.
Preparing to unpack .../278-libssl-dev_3.5.5-1~deb13u2_i386.deb ...
Unpacking libssl-dev:i386 (3.5.5-1~deb13u2) ...
Selecting previously unselected package libssh2-1-dev:i386.
Preparing to unpack .../279-libssh2-1-dev_1.11.1-1_i386.deb ...
Unpacking libssh2-1-dev:i386 (1.11.1-1) ...
Selecting previously unselected package libzstd-dev:i386.
Preparing to unpack .../280-libzstd-dev_1.5.7+dfsg-1_i386.deb ...
Unpacking libzstd-dev:i386 (1.5.7+dfsg-1) ...
Selecting previously unselected package libcurl4-openssl-dev:i386.
Preparing to unpack .../281-libcurl4-openssl-dev_8.14.1-2+deb13u2_i386.deb ...
Unpacking libcurl4-openssl-dev:i386 (8.14.1-2+deb13u2) ...
Selecting previously unselected package libdatrie-dev:i386.
Preparing to unpack .../282-libdatrie-dev_0.2.13-3+b1_i386.deb ...
Unpacking libdatrie-dev:i386 (0.2.13-3+b1) ...
Selecting previously unselected package libdeflate-dev:i386.
Preparing to unpack .../283-libdeflate-dev_1.23-2_i386.deb ...
Unpacking libdeflate-dev:i386 (1.23-2) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../284-libfile-which-perl_1.27-2_all.deb ...
Unpacking libfile-which-perl (1.27-2) ...
Selecting previously unselected package libfile-homedir-perl.
Preparing to unpack .../285-libfile-homedir-perl_1.006-2_all.deb ...
Unpacking libfile-homedir-perl (1.006-2) ...
Selecting previously unselected package libfontbox-java.
Preparing to unpack .../286-libfontbox-java_1%3a1.8.16-5_all.deb ...
Unpacking libfontbox-java (1:1.8.16-5) ...
Selecting previously unselected package libfontconfig1-dev:i386.
Preparing to unpack .../287-libfontconfig1-dev_2.15.0-2.3_i386.deb ...
Unpacking libfontconfig1-dev:i386 (2.15.0-2.3) ...
Selecting previously unselected package libfontenc1:i386.
Preparing to unpack .../288-libfontenc1_1%3a1.1.8-1+b2_i386.deb ...
Unpacking libfontenc1:i386 (1:1.1.8-1+b2) ...
Selecting previously unselected package libfribidi-dev:i386.
Preparing to unpack .../289-libfribidi-dev_1.0.16-1_i386.deb ...
Unpacking libfribidi-dev:i386 (1.0.16-1) ...
Selecting previously unselected package libgraphite2-dev:i386.
Preparing to unpack .../290-libgraphite2-dev_1.3.14-2+b1_i386.deb ...
Unpacking libgraphite2-dev:i386 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz-cairo0:i386.
Preparing to unpack .../291-libharfbuzz-cairo0_10.2.0-1+b1_i386.deb ...
Unpacking libharfbuzz-cairo0:i386 (10.2.0-1+b1) ...
Selecting previously unselected package libharfbuzz-icu0:i386.
Preparing to unpack .../292-libharfbuzz-icu0_10.2.0-1+b1_i386.deb ...
Unpacking libharfbuzz-icu0:i386 (10.2.0-1+b1) ...
Selecting previously unselected package libharfbuzz-subset0:i386.
Preparing to unpack .../293-libharfbuzz-subset0_10.2.0-1+b1_i386.deb ...
Unpacking libharfbuzz-subset0:i386 (10.2.0-1+b1) ...
Selecting previously unselected package libicu-dev:i386.
Preparing to unpack .../294-libicu-dev_76.1-4_i386.deb ...
Unpacking libicu-dev:i386 (76.1-4) ...
Selecting previously unselected package libharfbuzz-dev:i386.
Preparing to unpack .../295-libharfbuzz-dev_10.2.0-1+b1_i386.deb ...
Unpacking libharfbuzz-dev:i386 (10.2.0-1+b1) ...
Selecting previously unselected package libjbig-dev:i386.
Preparing to unpack .../296-libjbig-dev_2.1-6.1+b2_i386.deb ...
Unpacking libjbig-dev:i386 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo-dev:i386.
Preparing to unpack .../297-libjpeg62-turbo-dev_1%3a2.1.5-4_i386.deb ...
Unpacking libjpeg62-turbo-dev:i386 (1:2.1.5-4) ...
Selecting previously unselected package libjpeg-dev:i386.
Preparing to unpack .../298-libjpeg-dev_1%3a2.1.5-4_i386.deb ...
Unpacking libjpeg-dev:i386 (1:2.1.5-4) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../299-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libkpathsea6:i386.
Preparing to unpack .../300-libkpathsea6_2024.20240313.70630+ds-6_i386.deb ...
Unpacking libkpathsea6:i386 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package liblapack3:i386.
Preparing to unpack .../301-liblapack3_3.12.1-6_i386.deb ...
Unpacking liblapack3:i386 (3.12.1-6) ...
Selecting previously unselected package liblapack-dev:i386.
Preparing to unpack .../302-liblapack-dev_3.12.1-6_i386.deb ...
Unpacking liblapack-dev:i386 (3.12.1-6) ...
Selecting previously unselected package liblerc-dev:i386.
Preparing to unpack .../303-liblerc-dev_4.0.0+ds-5_i386.deb ...
Unpacking liblerc-dev:i386 (4.0.0+ds-5) ...
Selecting previously unselected package liblzma-dev:i386.
Preparing to unpack .../304-liblzma-dev_5.8.1-1_i386.deb ...
Unpacking liblzma-dev:i386 (5.8.1-1) ...
Selecting previously unselected package libmime-charset-perl.
Preparing to unpack .../305-libmime-charset-perl_1.013.1-2_all.deb ...
Unpacking libmime-charset-perl (1.013.1-2) ...
Selecting previously unselected package libmpfi0:i386.
Preparing to unpack .../306-libmpfi0_1.5.4+ds-4_i386.deb ...
Unpacking libmpfi0:i386 (1.5.4+ds-4) ...
Selecting previously unselected package libncurses6:i386.
Preparing to unpack .../307-libncurses6_6.5+20250216-2_i386.deb ...
Unpacking libncurses6:i386 (6.5+20250216-2) ...
Selecting previously unselected package libncurses-dev:i386.
Preparing to unpack .../308-libncurses-dev_6.5+20250216-2_i386.deb ...
Unpacking libncurses-dev:i386 (6.5+20250216-2) ...
Selecting previously unselected package libthai-dev:i386.
Preparing to unpack .../309-libthai-dev_0.1.29-2+b1_i386.deb ...
Unpacking libthai-dev:i386 (0.1.29-2+b1) ...
Selecting previously unselected package libxft-dev:i386.
Preparing to unpack .../310-libxft-dev_2.3.6-1+b4_i386.deb ...
Unpacking libxft-dev:i386 (2.3.6-1+b4) ...
Selecting previously unselected package pango1.0-tools.
Preparing to unpack .../311-pango1.0-tools_1.56.3-1_i386.deb ...
Unpacking pango1.0-tools (1.56.3-1) ...
Selecting previously unselected package libpango1.0-dev:i386.
Preparing to unpack .../312-libpango1.0-dev_1.56.3-1_i386.deb ...
Unpacking libpango1.0-dev:i386 (1.56.3-1) ...
Selecting previously unselected package libpaper2:i386.
Preparing to unpack .../313-libpaper2_2.2.5-0.3+b2_i386.deb ...
Unpacking libpaper2:i386 (2.2.5-0.3+b2) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../314-libpaper-utils_2.2.5-0.3+b2_i386.deb ...
Unpacking libpaper-utils (2.2.5-0.3+b2) ...
Selecting previously unselected package libpdfbox-java.
Preparing to unpack .../315-libpdfbox-java_1%3a1.8.16-5_all.deb ...
Unpacking libpdfbox-java (1:1.8.16-5) ...
Selecting previously unselected package libpotrace0:i386.
Preparing to unpack .../316-libpotrace0_1.16-2+b2_i386.deb ...
Unpacking libpotrace0:i386 (1.16-2+b2) ...
Selecting previously unselected package libptexenc1:i386.
Preparing to unpack .../317-libptexenc1_2024.20240313.70630+ds-6_i386.deb ...
Unpacking libptexenc1:i386 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package libreadline-dev:i386.
Preparing to unpack .../318-libreadline-dev_8.2-6_i386.deb ...
Unpacking libreadline-dev:i386 (8.2-6) ...
Selecting previously unselected package libsharpyuv-dev:i386.
Preparing to unpack .../319-libsharpyuv-dev_1.5.0-0.1_i386.deb ...
Unpacking libsharpyuv-dev:i386 (1.5.0-0.1) ...
Selecting previously unselected package libsombok3:i386.
Preparing to unpack .../320-libsombok3_2.4.0-2+b2_i386.deb ...
Unpacking libsombok3:i386 (2.4.0-2+b2) ...
Selecting previously unselected package libsynctex2:i386.
Preparing to unpack .../321-libsynctex2_2024.20240313.70630+ds-6_i386.deb ...
Unpacking libsynctex2:i386 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package libtcl8.6:i386.
Preparing to unpack .../322-libtcl8.6_8.6.16+dfsg-1_i386.deb ...
Unpacking libtcl8.6:i386 (8.6.16+dfsg-1) ...
Selecting previously unselected package libteckit0:i386.
Preparing to unpack .../323-libteckit0_2.5.12+ds1-1+b1_i386.deb ...
Unpacking libteckit0:i386 (2.5.12+ds1-1+b1) ...
Selecting previously unselected package libtexlua53-5:i386.
Preparing to unpack .../324-libtexlua53-5_2024.20240313.70630+ds-6_i386.deb ...
Unpacking libtexlua53-5:i386 (2024.20240313.70630+ds-6) ...
Selecting previously unselected package libtext-unidecode-perl.
Preparing to unpack .../325-libtext-unidecode-perl_1.30-3_all.deb ...
Unpacking libtext-unidecode-perl (1.30-3) ...
Selecting previously unselected package libwebpdemux2:i386.
Preparing to unpack .../326-libwebpdemux2_1.5.0-0.1_i386.deb ...
Unpacking libwebpdemux2:i386 (1.5.0-0.1) ...
Selecting previously unselected package libwebpmux3:i386.
Preparing to unpack .../327-libwebpmux3_1.5.0-0.1_i386.deb ...
Unpacking libwebpmux3:i386 (1.5.0-0.1) ...
Selecting previously unselected package libwebpdecoder3:i386.
Preparing to unpack .../328-libwebpdecoder3_1.5.0-0.1_i386.deb ...
Unpacking libwebpdecoder3:i386 (1.5.0-0.1) ...
Selecting previously unselected package libwebp-dev:i386.
Preparing to unpack .../329-libwebp-dev_1.5.0-0.1_i386.deb ...
Unpacking libwebp-dev:i386 (1.5.0-0.1) ...
Selecting previously unselected package libtiffxx6:i386.
Preparing to unpack .../330-libtiffxx6_4.7.0-3+deb13u2_i386.deb ...
Unpacking libtiffxx6:i386 (4.7.0-3+deb13u2) ...
Selecting previously unselected package libtiff-dev:i386.
Preparing to unpack .../331-libtiff-dev_4.7.0-3+deb13u2_i386.deb ...
Unpacking libtiff-dev:i386 (4.7.0-3+deb13u2) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../332-libtirpc-common_1.3.6+ds-1_all.deb ...
Unpacking libtirpc-common (1.3.6+ds-1) ...
Selecting previously unselected package libtirpc3t64:i386.
Preparing to unpack .../333-libtirpc3t64_1.3.6+ds-1_i386.deb ...
Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:i386 (1.3.6+ds-1) ...
Selecting previously unselected package libtirpc-dev:i386.
Preparing to unpack .../334-libtirpc-dev_1.3.6+ds-1_i386.deb ...
Unpacking libtirpc-dev:i386 (1.3.6+ds-1) ...
Selecting previously unselected package libxss1:i386.
Preparing to unpack .../335-libxss1_1%3a1.2.3-1+b3_i386.deb ...
Unpacking libxss1:i386 (1:1.2.3-1+b3) ...
Selecting previously unselected package libtk8.6:i386.
Preparing to unpack .../336-libtk8.6_8.6.16-1_i386.deb ...
Unpacking libtk8.6:i386 (8.6.16-1) ...
Selecting previously unselected package libunicode-linebreak-perl.
Preparing to unpack .../337-libunicode-linebreak-perl_0.0.20190101-1+b8_i386.deb ...
Unpacking libunicode-linebreak-perl (0.0.20190101-1+b8) ...
Selecting previously unselected package libunwind8:i386.
Preparing to unpack .../338-libunwind8_1.8.1-0.1_i386.deb ...
Unpacking libunwind8:i386 (1.8.1-0.1) ...
Selecting previously unselected package libxt6t64:i386.
Preparing to unpack .../339-libxt6t64_1%3a1.2.1-1.2+b2_i386.deb ...
Unpacking libxt6t64:i386 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package libxmu6:i386.
Preparing to unpack .../340-libxmu6_2%3a1.1.3-3+b4_i386.deb ...
Unpacking libxmu6:i386 (2:1.1.3-3+b4) ...
Selecting previously unselected package libxpm4:i386.
Preparing to unpack .../341-libxpm4_1%3a3.5.17-1+b3_i386.deb ...
Unpacking libxpm4:i386 (1:3.5.17-1+b3) ...
Selecting previously unselected package libxaw7:i386.
Preparing to unpack .../342-libxaw7_2%3a1.0.16-1_i386.deb ...
Unpacking libxaw7:i386 (2:1.0.16-1) ...
Selecting previously unselected package libxfont2:i386.
Preparing to unpack .../343-libxfont2_1%3a2.0.6-1+b3_i386.deb ...
Unpacking libxfont2:i386 (1:2.0.6-1+b3) ...
Selecting previously unselected package libxkbfile1:i386.
Preparing to unpack .../344-libxkbfile1_1%3a1.1.0-1+b4_i386.deb ...
Unpacking libxkbfile1:i386 (1:1.1.0-1+b4) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../345-libxml-namespacesupport-perl_1.12-2_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-2) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../346-libxml-sax-base-perl_1.09-3_all.deb ...
Unpacking libxml-sax-base-perl (1.09-3) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../347-libxml-sax-perl_1.02+dfsg-4_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-4) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../348-libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b2_i386.deb ...
Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ...
Selecting previously unselected package libxmuu1:i386.
Preparing to unpack .../349-libxmuu1_2%3a1.1.3-3+b4_i386.deb ...
Unpacking libxmuu1:i386 (2:1.1.3-3+b4) ...
Selecting previously unselected package libxss-dev:i386.
Preparing to unpack .../350-libxss-dev_1%3a1.2.3-1+b3_i386.deb ...
Unpacking libxss-dev:i386 (1:1.2.3-1+b3) ...
Selecting previously unselected package libxt-dev:i386.
Preparing to unpack .../351-libxt-dev_1%3a1.2.1-1.2+b2_i386.deb ...
Unpacking libxt-dev:i386 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package libyaml-tiny-perl.
Preparing to unpack .../352-libyaml-tiny-perl_1.76-1_all.deb ...
Unpacking libyaml-tiny-perl (1.76-1) ...
Selecting previously unselected package libzzip-0-13t64:i386.
Preparing to unpack .../353-libzzip-0-13t64_0.13.78+dfsg.1-0.1_i386.deb ...
Unpacking libzzip-0-13t64:i386 (0.13.78+dfsg.1-0.1) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../354-tex-common_6.19_all.deb ...
Unpacking tex-common (6.19) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../355-xfonts-encodings_1%3a1.0.4-2.2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2.2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../356-xfonts-utils_1%3a7.7+7_i386.deb ...
Unpacking xfonts-utils (1:7.7+7) ...
Selecting previously unselected package lmodern.
Preparing to unpack .../357-lmodern_2.005-1_all.deb ...
Unpacking lmodern (2.005-1) ...
Selecting previously unselected package mpack.
Preparing to unpack .../358-mpack_1.6-18+b1_i386.deb ...
Unpacking mpack (1.6-18+b1) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../359-preview-latex-style_13.2-1.1_all.deb ...
Unpacking preview-latex-style (13.2-1.1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../360-t1utils_1.41-4_i386.deb ...
Unpacking t1utils (1.41-4) ...
Selecting previously unselected package tcl8.6.
Preparing to unpack .../361-tcl8.6_8.6.16+dfsg-1_i386.deb ...
Unpacking tcl8.6 (8.6.16+dfsg-1) ...
Selecting previously unselected package tcl8.6-dev:i386.
Preparing to unpack .../362-tcl8.6-dev_8.6.16+dfsg-1_i386.deb ...
Unpacking tcl8.6-dev:i386 (8.6.16+dfsg-1) ...
Selecting previously unselected package texinfo-lib.
Preparing to unpack .../363-texinfo-lib_7.1.1-1+b1_i386.deb ...
Unpacking texinfo-lib (7.1.1-1+b1) ...
Selecting previously unselected package texinfo.
Preparing to unpack .../364-texinfo_7.1.1-1_all.deb ...
Unpacking texinfo (7.1.1-1) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../365-texlive-binaries_2024.20240313.70630+ds-6_i386.deb ...
Unpacking texlive-binaries (2024.20240313.70630+ds-6) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../366-xdg-utils_1.2.1-2_all.deb ...
Unpacking xdg-utils (1.2.1-2) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../367-texlive-base_2024.20250309-1_all.deb ...
Unpacking texlive-base (2024.20250309-1) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../368-texlive-latex-base_2024.20250309-1_all.deb ...
Unpacking texlive-latex-base (2024.20250309-1) ...
Selecting previously unselected package texlive-luatex.
Preparing to unpack .../369-texlive-luatex_2024.20250309-1_all.deb ...
Unpacking texlive-luatex (2024.20250309-1) ...
Selecting previously unselected package texlive-plain-generic.
Preparing to unpack .../370-texlive-plain-generic_2024.20250309-2_all.deb ...
Unpacking texlive-plain-generic (2024.20250309-2) ...
Selecting previously unselected package texlive-extra-utils.
Preparing to unpack .../371-texlive-extra-utils_2024.20250309-2_all.deb ...
Unpacking texlive-extra-utils (2024.20250309-2) ...
Selecting previously unselected package texlive-fonts-extra.
Preparing to unpack .../372-texlive-fonts-extra_2024.20250309-2_all.deb ...
Unpacking texlive-fonts-extra (2024.20250309-2) ...
Selecting previously unselected package texlive-fonts-recommended.
Preparing to unpack .../373-texlive-fonts-recommended_2024.20250309-1_all.deb ...
Unpacking texlive-fonts-recommended (2024.20250309-1) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../374-texlive-latex-recommended_2024.20250309-1_all.deb ...
Unpacking texlive-latex-recommended (2024.20250309-1) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../375-texlive-pictures_2024.20250309-1_all.deb ...
Unpacking texlive-pictures (2024.20250309-1) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../376-texlive-latex-extra_2024.20250309-2_all.deb ...
Unpacking texlive-latex-extra (2024.20250309-2) ...
Selecting previously unselected package tk8.6.
Preparing to unpack .../377-tk8.6_8.6.16-1_i386.deb ...
Unpacking tk8.6 (8.6.16-1) ...
Selecting previously unselected package x11proto-core-dev.
Preparing to unpack .../378-x11proto-core-dev_2024.1-1_all.deb ...
Unpacking x11proto-core-dev (2024.1-1) ...
Selecting previously unselected package tk8.6-dev:i386.
Preparing to unpack .../379-tk8.6-dev_8.6.16-1_i386.deb ...
Unpacking tk8.6-dev:i386 (8.6.16-1) ...
Selecting previously unselected package x11-xkb-utils.
Preparing to unpack .../380-x11-xkb-utils_7.7+9_i386.deb ...
Unpacking x11-xkb-utils (7.7+9) ...
Selecting previously unselected package xauth.
Preparing to unpack .../381-xauth_1%3a1.1.2-1.1_i386.deb ...
Unpacking xauth (1:1.1.2-1.1) ...
Selecting previously unselected package xfonts-base.
Preparing to unpack .../382-xfonts-base_1%3a1.0.5+nmu1_all.deb ...
Unpacking xfonts-base (1:1.0.5+nmu1) ...
Selecting previously unselected package xserver-common.
Preparing to unpack .../383-xserver-common_2%3a21.1.16-1.3+deb13u1_all.deb ...
Unpacking xserver-common (2:21.1.16-1.3+deb13u1) ...
Selecting previously unselected package xvfb.
Preparing to unpack .../384-xvfb_2%3a21.1.16-1.3+deb13u1_i386.deb ...
Unpacking xvfb (2:21.1.16-1.3+deb13u1) ...
Setting up media-types (13.0.0) ...
Setting up libpipeline1:i386 (1.5.8-1) ...
Setting up libgraphite2-3:i386 (1.3.14-2+b1) ...
Setting up liblcms2-2:i386 (2.16-2) ...
Setting up libpixman-1-0:i386 (0.44.0-3) ...
Setting up libtext-charwidth-perl:i386 (0.04-11+b4) ...
Setting up libsharpyuv0:i386 (1.5.0-0.1) ...
Setting up libpciaccess0:i386 (0.17-3+b3) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up systemd-sysv (257.9-1~deb13u1) ...
Setting up libxau6:i386 (1:1.0.11-1) ...
Setting up libxdmcp6:i386 (1:1.1.5-1) ...
Setting up libkeyutils1:i386 (1.6.3-6) ...
Setting up libxcb1:i386 (1.17.0-2+b1) ...
Setting up libpixman-1-dev:i386 (0.44.0-3) ...
Setting up native-architecture (0.2.6) ...
Setting up libxcb-xfixes0:i386 (1.17.0-2+b1) ...
Setting up libzstd-dev:i386 (1.5.7+dfsg-1) ...
Setting up liblerc4:i386 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.41-5) ...
Setting up hicolor-icon-theme (0.18-2) ...
Setting up java-common (0.76) ...
Setting up libdatrie1:i386 (0.2.13-3+b1) ...
Setting up libmagic-mgc (1:5.46-5) ...
Setting up mpack (1.6-18+b1) ...
Setting up libxcb-render0:i386 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglvnd0:i386 (1.7.0-1+b2) ...
Setting up libtirpc-common (1.3.6+ds-1) ...
Setting up libxcb-glx0:i386 (1.17.0-2+b1) ...
Setting up libdebhelper-perl (13.24.2) ...
Setting up libbrotli1:i386 (1.1.0-2+b7) ...
Setting up libfontbox-java (1:1.8.16-5) ...
Setting up libedit2:i386 (3.1-20250104-1) ...
Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-4+deb13u1) ...
Setting up libmagic1t64:i386 (1:5.46-5) ...
Setting up x11-common (1:7.7+24+deb13u1) ...
Running in chroot, ignoring request.
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libsensors-config (1:3.6.2-2) ...
Setting up libnghttp2-14:i386 (1.64.0-1.1) ...
Setting up libdeflate0:i386 (1.23-2) ...
Setting up libwebpdecoder3:i386 (1.5.0-0.1) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up gettext-base (0.23.1-2) ...
Setting up m4 (1.4.19-8) ...
Setting up libevent-2.1-7t64:i386 (2.1.12-stable-10+b1) ...
Setting up xkb-data (2.42-1) ...
Setting up liblzo2-2:i386 (2.10-3+b1) ...
Setting up libxcb-shm0:i386 (1.17.0-2+b1) ...
Setting up libcom-err2:i386 (1.47.2-3+b10) ...
Setting up file (1:5.46-5) ...
Setting up texinfo-lib (7.1.1-1+b1) ...
Setting up libunwind8:i386 (1.8.1-0.1) ...
Setting up libyaml-tiny-perl (1.76-1) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libjbig0:i386 (2.1-6.1+b2) ...
Setting up libpcre2-16-0:i386 (10.46-1~deb13u1) ...
Setting up libelf1t64:i386 (0.192-4) ...
Setting up libkrb5support0:i386 (1.21.3-5) ...
Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-9) ...
Setting up libxcb-present0:i386 (1.17.0-2+b1) ...
Setting up libsysprof-capture-4-dev:i386 (48.0-2) ...
Setting up libasound2-data (1.2.14-1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up libgraphite2-dev:i386 (1.3.14-2+b1) ...
Setting up libfontenc1:i386 (1:1.1.8-1+b2) ...
Setting up autotools-dev (20240727.1) ...
Setting up libz3-4:i386 (4.13.3-1) ...
Setting up libpcre2-32-0:i386 (10.46-1~deb13u1) ...
Setting up libblas3:i386 (3.12.1-6) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
Setting up libglib2.0-data (2.84.4-3~deb13u2) ...
Setting up libunbound8:i386 (1.22.0-2+deb13u1) ...
Setting up libpkgconf3:i386 (1.8.1-4) ...
Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-3) ...
Setting up libasound2t64:i386 (1.2.14-1) ...
Setting up libexpat1-dev:i386 (2.7.1-2) ...
Setting up libjpeg62-turbo:i386 (1:2.1.5-4) ...
Setting up libzzip-0-13t64:i386 (0.13.78+dfsg.1-0.1) ...
Setting up libx11-data (2:1.8.12-1) ...
Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-4) ...
Setting up libepoxy0:i386 (1.5.10-2) ...
Setting up libnspr4:i386 (2:4.36-1) ...
Setting up cpp-14-for-host:i386 (14.2.0-19) ...
Setting up libxcb-sync1:i386 (1.17.0-2+b1) ...
Setting up libteckit0:i386 (2.5.12+ds1-1+b1) ...
Setting up bash-completion (1:2.16.0-7) ...
Setting up uuid-dev:i386 (2.41-5) ...
Setting up libapache-pom-java (33-2) ...
Setting up libavahi-common-data:i386 (0.8-16) ...
Setting up libncurses6:i386 (6.5+20250216-2) ...
Setting up libdbus-1-3:i386 (1.16.2-2) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:i386 (1.0.16-1) ...
Setting up t1utils (1.41-4) ...
Setting up libtexlua53-5:i386 (2024.20240313.70630+ds-6) ...
Setting up libproc2-0:i386 (2:4.0.4-9) ...
Setting up comerr-dev:i386 (2.1-1.47.2-3+b10) ...
Setting up libunistring5:i386 (1.3-2) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libssl-dev:i386 (3.5.5-1~deb13u2) ...
Setting up libpng16-16t64:i386 (1.6.48-1+deb13u4) ...
Setting up libtcl8.6:i386 (8.6.16+dfsg-1) ...
Setting up autopoint (0.23.1-2) ...
Setting up libmpfi0:i386 (1.5.4+ds-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libsepol-dev:i386 (3.8.1-1) ...
Setting up libpcsclite1:i386 (2.3.3-1) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libsensors5:i386 (1:3.6.2-2) ...
Setting up liblerc-dev:i386 (4.0.0+ds-5) ...
Setting up libk5crypto3:i386 (1.21.3-5) ...
Setting up libkpathsea6:i386 (2024.20240313.70630+ds-6) ...
Setting up libsasl2-2:i386 (2.1.28+dfsg1-9) ...
Setting up libgfortran5:i386 (14.2.0-19) ...
Setting up libvulkan1:i386 (1.4.309.0-1) ...
Setting up autoconf (2.72-3.1) ...
Setting up libnghttp3-9:i386 (1.8.0-1) ...
Setting up libwebp7:i386 (1.5.0-0.1) ...
Setting up libnghttp3-dev:i386 (1.8.0-1) ...
Setting up liblzma-dev:i386 (5.8.1-1) ...
Setting up libgif7:i386 (5.2.2-1+b1) ...
Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:i386 (3.4.8-2) ...
Setting up libpcre2-posix3:i386 (10.46-1~deb13u1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.25) ...
Setting up libxshmfence1:i386 (1.3.3-1) ...
Setting up at-spi2-common (2.56.2-1+deb13u1) ...
Setting up libmime-charset-perl (1.013.1-2) ...
Setting up libtiff6:i386 (4.7.0-3+deb13u2) ...
Setting up libxcb-randr0:i386 (1.17.0-2+b1) ...
Setting up dbus-session-bus-common (1.16.2-2) ...
Setting up libuchardet0:i386 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-9) ...
Setting up bison (2:3.8.2+dfsg-1+b2) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libtasn1-6:i386 (4.20.0-2) ...
Setting up fonts-lmodern (2.005-1) ...
Setting up libx11-6:i386 (2:1.8.12-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up netbase (6.5) ...
Setting up libkrb5-3:i386 (1.21.3-5) ...
Setting up libwayland-egl1:i386 (1.23.1-3) ...
Setting up libicu76:i386 (76.1-4) ...
Setting up libxkbfile1:i386 (1:1.1.0-1+b4) ...
Setting up libpaper2:i386 (2.2.5-0.3+b2) ...
Setting up libssh2-1t64:i386 (1.11.1-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up dbus-system-bus-common (1.16.2-2) ...
Creating group 'messagebus' with GID 997.
Creating user 'messagebus' (System Message Bus) with UID 997 and GID 997.
Setting up libtext-unidecode-perl (1.30-3) ...
Setting up libsharpyuv-dev:i386 (1.5.0-0.1) ...
Setting up libfile-homedir-perl (1.006-2) ...
Setting up libtasn1-6-dev:i386 (4.20.0-2) ...
Setting up openssl (3.5.5-1~deb13u2) ...
Setting up libwebpmux3:i386 (1.5.0-0.1) ...
Setting up libtiffxx6:i386 (4.7.0-3+deb13u2) ...
Setting up libdeflate-dev:i386 (1.23-2) ...
Setting up libdrm-common (2.4.124-2) ...
Setting up libxcomposite1:i386 (1:0.4.6-1) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-2.1+deb13u2) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libldap2:i386 (2.6.10+dfsg-1) ...
Setting up libxmuu1:i386 (2:1.1.3-3+b4) ...
Setting up dbus-bin (1.16.2-2) ...
Setting up libbrotli-dev:i386 (1.1.0-2+b7) ...
Setting up libblas-dev:i386 (3.12.1-6) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode
Setting up libsynctex2:i386 (2024.20240313.70630+ds-6) ...
Setting up libbz2-dev:i386 (1.0.8-6) ...
Setting up cpp-for-host:i386 (4:14.2.0-1) ...
Setting up libxkbcommon0:i386 (1.7.0-2) ...
Setting up libpotrace0:i386 (1.16-2+b2) ...
Setting up libwayland-client0:i386 (1.23.1-3) ...
Setting up automake (1:1.17-4) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libgfortran-14-dev:i386 (14.2.0-19) ...
Setting up x11proto-dev (2024.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up libxcb-dri3-0:i386 (1.17.0-2+b1) ...
Setting up libblkid-dev:i386 (2.41-5) ...
Setting up libllvm19:i386 (1:19.1.7-3+b1) ...
Setting up libwayland-server0:i386 (1.23.1-3) ...
Setting up libx11-xcb1:i386 (2:1.8.12-1) ...
Setting up libice6:i386 (2:1.1.1-1) ...
Setting up tcl8.6 (8.6.16+dfsg-1) ...
Setting up liblapack3:i386 (3.12.1-6) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up libncurses-dev:i386 (6.5+20250216-2) ...
Setting up gettext (0.23.1-2) ...
Setting up gcc-14-for-host:i386 (14.2.0-19) ...
Setting up libxdamage1:i386 (1:1.1.6-1+b2) ...
Setting up libgmp-dev:i386 (2:6.3.0+dfsg-3) ...
Setting up libpdfbox-java (1:1.8.16-5) ...
Setting up libxau-dev:i386 (1:1.0.11-1) ...
Setting up libxpm4:i386 (1:3.5.17-1+b3) ...
Setting up libpcre2-dev:i386 (10.46-1~deb13u1) ...
Setting up nettle-dev:i386 (3.10.1-1) ...
Setting up libxrender1:i386 (1:0.9.12-1) ...
Setting up libice-dev:i386 (2:1.1.1-1) ...
Setting up libtool (2.5.4-4) ...
Setting up libselinux1-dev:i386 (3.8.1-1) ...
Setting up fontconfig-config (2.15.0-2.3) ...
Setting up libfribidi-dev:i386 (1.0.16-1) ...
Setting up libwebpdemux2:i386 (1.5.0-0.1) ...
Setting up tcl8.6-dev:i386 (8.6.16+dfsg-1) ...
Setting up libpng-dev:i386 (1.6.48-1+deb13u4) ...
Setting up libcommons-parent-java (56-1) ...
Setting up libavahi-common3:i386 (0.8-16) ...
Setting up libjpeg-dev:i386 (1:2.1.5-4) ...
Setting up libjbig-dev:i386 (2.1-6.1+b2) ...
Setting up gcc-for-host:i386 (4:14.2.0-1) ...
Setting up libcommons-logging-java (1.3.0-2) ...
Setting up libxext6:i386 (2:1.3.4-1+b3) ...
Setting up libidn2-0:i386 (2.3.8-2) ...
Setting up libnss3:i386 (2:3.110-1+deb13u1) ...
Setting up dbus-daemon (1.16.2-2) ...
Setting up libpaper-utils (2.2.5-0.3+b2) ...
Setting up libffi-dev:i386 (3.4.8-2) ...
Setting up pkgconf:i386 (1.8.1-4) ...
Setting up libxxf86vm1:i386 (1:1.1.4-1+b4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:i386 (0.1.29-2+b1) ...
Setting up ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
150 added, 0 removed; done.
Setting up libxdmcp-dev:i386 (1:1.1.5-1) ...
Setting up libglib2.0-0t64:i386 (2.84.4-3~deb13u2) ...
Setting up libwebp-dev:i386 (1.5.0-0.1) ...
Setting up libptexenc1:i386 (2024.20240313.70630+ds-6) ...
Setting up libfreetype6:i386 (2.13.3+dfsg-1+deb13u1) ...
Setting up libtiff-dev:i386 (4.7.0-3+deb13u2) ...
Setting up libxfixes3:i386 (1:6.0.0-2+b4) ...
Setting up x11proto-core-dev (2024.1-1) ...
Setting up libldap-dev:i386 (2.6.10+dfsg-1) ...
Setting up dbus (1.16.2-2) ...
Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of start.
Setting up shared-mime-info (2.4-5+b2) ...
Setting up libp11-kit0:i386 (0.25.5-3) ...
Setting up libxinerama1:i386 (2:1.1.4-3+b4) ...
Setting up liblapack-dev:i386 (3.12.1-6) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode
Setting up gfortran-14-i686-linux-gnu (14.2.0-19) ...
Setting up libgssapi-krb5-2:i386 (1.21.3-5) ...
Setting up libxrandr2:i386 (2:1.5.4-1+b3) ...
Setting up icu-devtools (76.1-4) ...
Setting up ucf (3.0052) ...
Setting up gir1.2-glib-2.0:i386 (2.84.4-3~deb13u2) ...
Setting up libssh2-1-dev:i386 (1.11.1-1) ...
Setting up libidn2-dev:i386 (2.3.8-2) ...
Setting up libreadline8t64:i386 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up libdrm2:i386 (2.4.124-2) ...
Setting up libdatrie-dev:i386 (0.2.13-3+b1) ...
Setting up gir1.2-glib-2.0-dev:i386 (2.84.4-3~deb13u2) ...
Setting up xauth (1:1.1.2-1.1) ...
Setting up groff-base (1.23.0-9) ...
Setting up libwayland-cursor0:i386 (1.23.1-3) ...
Setting up libpam-systemd:i386 (257.9-1~deb13u1) ...
Setting up libharfbuzz0b:i386 (10.2.0-1+b1) ...
Setting up libgdk-pixbuf-2.0-0:i386 (2.42.12+dfsg-4+deb13u1) ...
Setting up libxss1:i386 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:i386 (2.15.0-2.3) ...
Setting up ca-certificates-java (20240118) ...
No JRE found. Skipping Java certificates setup.
Setting up libsm6:i386 (2:1.2.6-1) ...
Setting up libxfont2:i386 (1:2.0.6-1+b3) ...
Setting up libpython3.13-stdlib:i386 (3.13.5-2) ...
Setting up libicu-dev:i386 (76.1-4) ...
Setting up libavahi-client3:i386 (0.8-16) ...
Setting up libmount-dev:i386 (2.41-5) ...
Setting up libp11-kit-dev:i386 (0.25.5-3) ...
Setting up libpython3-stdlib:i386 (3.13.5-1) ...
Setting up libdrm-amdgpu1:i386 (2.4.124-2) ...
Setting up libgnutls30t64:i386 (3.8.9-3+deb13u2) ...
Setting up libgnutls-openssl27t64:i386 (3.8.9-3+deb13u2) ...
Setting up gtk-update-icon-cache (4.18.6+ds-2) ...
Setting up libnghttp2-dev:i386 (1.64.0-1.1) ...
Setting up fontconfig (2.15.0-2.3) ...
Regenerating fonts cache... done.
Setting up libxft2:i386 (2.3.6-1+b4) ...
Setting up libgio-2.0-dev:i386 (2.84.4-3~deb13u2) ...
Setting up libharfbuzz-icu0:i386 (10.2.0-1+b1) ...
Setting up libxcb1-dev:i386 (1.17.0-2+b1) ...
Setting up libatk1.0-0t64:i386 (2.56.2-1+deb13u1) ...
Setting up openjdk-21-jre-headless:i386 (21.0.10+7-1~deb13u1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up libxi6:i386 (2:1.8.2-1) ...
Setting up gfortran-14-for-host:i386 (14.2.0-19) ...
Setting up libtirpc3t64:i386 (1.3.6+ds-1) ...
Setting up python3.13 (3.13.5-2) ...
Setting up libgirepository-2.0-0:i386 (2.84.4-3~deb13u2) ...
Setting up libsombok3:i386 (2.4.0-2+b2) ...
Setting up libsm-dev:i386 (2:1.2.6-1) ...
Setting up libxtst6:i386 (2:1.2.5-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:i386 (8.6.16-1) ...
Setting up libxcursor1:i386 (1:1.2.3-1) ...
Setting up libpango-1.0-0:i386 (1.56.3-1) ...
Setting up libdrm-intel1:i386 (2.4.124-2) ...
Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ...
Setting up libx11-dev:i386 (2:1.8.12-1) ...
Setting up libcloudproviders0:i386 (0.3.6-2) ...
Setting up libglib2.0-bin (2.84.4-3~deb13u2) ...
Setting up python3 (3.13.5-1) ...
Setting up libharfbuzz-gobject0:i386 (10.2.0-1+b1) ...
Setting up libreadline-dev:i386 (8.2-6) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'.
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libcairo2:i386 (1.18.4-1+b1) ...
Setting up libcolord2:i386 (1.4.7-3) ...
Setting up libpsl-dev:i386 (0.21.2-1.1+b1) ...
Setting up libfreetype-dev:i386 (2.13.3+dfsg-1+deb13u1) ...
Setting up libdconf1:i386 (0.40.0-5) ...
Setting up tex-common (6.19) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libxcb-shm0-dev:i386 (1.17.0-2+b1) ...
Setting up dbus-user-session (1.16.2-2) ...
Setting up xfonts-base (1:1.0.5+nmu1) ...
Setting up python3-packaging (25.0-1) ...
Setting up libtirpc-dev:i386 (1.3.6+ds-1) ...
Setting up libgnutls-dane0t64:i386 (3.8.9-3+deb13u2) ...
Setting up libharfbuzz-cairo0:i386 (10.2.0-1+b1) ...
Setting up adwaita-icon-theme (48.1-1) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up gfortran-i686-linux-gnu (4:14.2.0-1) ...
Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libgssrpc4t64:i386 (1.21.3-5) ...
Setting up libunicode-linebreak-perl (0.0.20190101-1+b8) ...
Setting up libatspi2.0-0t64:i386 (2.56.2-1+deb13u1) ...
Setting up libxt6t64:i386 (1:1.2.1-1.2+b2) ...
Setting up libxcb-render0-dev:i386 (1.17.0-2+b1) ...
Setting up libxext-dev:i386 (2:1.3.4-1+b3) ...
Setting up libthai-dev:i386 (0.1.29-2+b1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up lmodern (2.005-1) ...
Setting up libharfbuzz-subset0:i386 (10.2.0-1+b1) ...
Setting up libcairo-gobject2:i386 (1.18.4-1+b1) ...
Setting up libpangoft2-1.0-0:i386 (1.56.3-1) ...
Setting up libxrender-dev:i386 (1:0.9.12-1) ...
Setting up libcups2t64:i386 (2.4.10-3+deb13u2) ...
Setting up libpangocairo-1.0-0:i386 (1.56.3-1) ...
Setting up libkadm5clnt-mit12:i386 (1.21.3-5) ...
Setting up libgnutls28-dev:i386 (3.8.9-3+deb13u2) ...
Setting up libcairo-script-interpreter2:i386 (1.18.4-1+b1) ...
Setting up libatk-bridge2.0-0t64:i386 (2.56.2-1+deb13u1) ...
Setting up tk8.6 (8.6.16-1) ...
Setting up mesa-libgallium:i386 (25.0.7-2) ...
Setting up libgio-2.0-dev-bin (2.84.4-3~deb13u2) ...
Setting up libxmu6:i386 (2:1.1.3-3+b4) ...
Setting up gir1.2-freedesktop:i386 (1.84.0-1) ...
Setting up girepository-tools:i386 (2.84.4-3~deb13u2) ...
Setting up libpangoxft-1.0-0:i386 (1.56.3-1) ...
Setting up libcurl4t64:i386 (8.14.1-2+deb13u2) ...
Setting up libkdb5-10t64:i386 (1.21.3-5) ...
Setting up libgbm1:i386 (25.0.7-2) ...
Setting up libfontconfig-dev:i386 (2.15.0-2.3) ...
Setting up preview-latex-style (13.2-1.1) ...
Setting up libgl1-mesa-dri:i386 (25.0.7-2) ...
Setting up pango1.0-tools (1.56.3-1) ...
Setting up debhelper (13.24.2) ...
Setting up dconf-service (0.40.0-5) ...
Setting up libxaw7:i386 (2:1.0.16-1) ...
Setting up libxss-dev:i386 (1:1.2.3-1+b3) ...
Setting up gir1.2-harfbuzz-0.0:i386 (10.2.0-1+b1) ...
Setting up gfortran-for-host:i386 (4:14.2.0-1) ...
Setting up gir1.2-pango-1.0:i386 (1.56.3-1) ...
Setting up libxt-dev:i386 (1:1.2.1-1.2+b2) ...
Setting up gir1.2-freedesktop-dev:i386 (1.84.0-1) ...
Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up texinfo (7.1.1-1) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-binaries (2024.20240313.70630+ds-6) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libkadm5srv-mit12:i386 (1.21.3-5) ...
Setting up texlive-base (2024.20250309-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libxft-dev:i386 (2.3.6-1+b4) ...
Setting up krb5-multidev:i386 (1.21.3-5) ...
Setting up libglib2.0-dev-bin (2.84.4-3~deb13u2) ...
Setting up libfontconfig1-dev:i386 (2.15.0-2.3) ...
Setting up libglx-mesa0:i386 (25.0.7-2) ...
Setting up libglx0:i386 (1.7.0-1+b2) ...
Setting up dconf-gsettings-backend:i386 (0.40.0-5) ...
Setting up texlive-luatex (2024.20250309-1) ...
Setting up x11-xkb-utils (7.7+9) ...
Setting up texlive-plain-generic (2024.20250309-2) ...
Setting up libkrb5-dev:i386 (1.21.3-5) ...
Setting up libgl1:i386 (1.7.0-1+b2) ...
Setting up libglib2.0-dev:i386 (2.84.4-3~deb13u2) ...
Setting up texlive-latex-base (2024.20250309-1) ...
Setting up libcurl4-openssl-dev:i386 (8.14.1-2+deb13u2) ...
Setting up texlive-extra-utils (2024.20250309-2) ...
Setting up texlive-fonts-extra (2024.20250309-2) ...
Setting up texlive-latex-recommended (2024.20250309-1) ...
Setting up texlive-pictures (2024.20250309-1) ...
Setting up tk8.6-dev:i386 (8.6.16-1) ...
Setting up texlive-fonts-recommended (2024.20250309-1) ...
Setting up libcairo2-dev:i386 (1.18.4-1+b1) ...
Setting up xserver-common (2:21.1.16-1.3+deb13u1) ...
Setting up libgtk-3-common (3.24.49-3) ...
Setting up libharfbuzz-dev:i386 (10.2.0-1+b1) ...
Setting up xvfb (2:21.1.16-1.3+deb13u1) ...
Setting up texlive-latex-extra (2024.20250309-2) ...
Setting up libpango1.0-dev:i386 (1.56.3-1) ...
Setting up libgtk-3-0t64:i386 (3.24.49-3) ...
Processing triggers for libc-bin (2.41-12+deb13u2) ...
Processing triggers for systemd (257.9-1~deb13u1) ...
Processing triggers for ca-certificates-java (20240118) ...
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:BJCA_Global_Root_CA1.pem
Adding debian:BJCA_Global_Root_CA2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certainly_Root_E1.pem
Adding debian:Certainly_Root_R1.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
Adding debian:D-TRUST_BR_Root_CA_2_2023.pem
Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
Adding debian:D-TRUST_EV_Root_CA_2_2023.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:HiPKI_Root_CA_-_G1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:ISRG_Root_X2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
Adding debian:SecureSign_Root_CA12.pem
Adding debian:SecureSign_Root_CA14.pem
Adding debian:SecureSign_Root_CA15.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_ECC_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_CYBER_Root_CA.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Telia_Root_CA_v2.pem
Adding debian:TrustAsia_Global_Root_CA_G3.pem
Adding debian:TrustAsia_Global_Root_CA_G4.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:TunTrust_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:vTrus_ECC_Root_CA.pem
Adding debian:vTrus_Root_CA.pem
done.
Setting up openjdk-21-jre:i386 (21.0.10+7-1~deb13u1) ...
Setting up openjdk-21-jdk-headless:i386 (21.0.10+7-1~deb13u1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre-headless (2:1.21-76) ...
Setting up default-jre (2:1.21-76) ...
Setting up openjdk-21-jdk:i386 (21.0.10+7-1~deb13u1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk-headless (2:1.21-76) ...
Setting up default-jdk (2:1.21-76) ...
Processing triggers for ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for tex-common (6.19) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Processing triggers for ca-certificates-java (20240118) ...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  libfakeroot
The following NEW packages will be installed:
  fakeroot libfakeroot
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/110 kB of archives.
After this operation, 377 kB of additional disk space will be used.
Selecting previously unselected package libfakeroot:i386.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 177526 files and directories currently installed.)
Preparing to unpack .../libfakeroot_1.37.1.1-1_i386.deb ...
Unpacking libfakeroot:i386 (1.37.1.1-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../fakeroot_1.37.1.1-1_i386.deb ...
Unpacking fakeroot (1.37.1.1-1) ...
Setting up libfakeroot:i386 (1.37.1.1-1) ...
Setting up fakeroot (1.37.1.1-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Processing triggers for man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.41-12+deb13u2) ...
[0mI: Copying back the cached apt archive contents[0m
[0mI: new cache content 'libpng-dev_1.6.48-1+deb13u4_i386.deb' added[0m
[0mI: new cache content 'libgdk-pixbuf2.0-common_2.42.12+dfsg-4+deb13u1_all.deb' added[0m
[0mI: new cache content 'libfreetype-dev_2.13.3+dfsg-1+deb13u1_i386.deb' added[0m
[0mI: new cache content 'libfreetype6_2.13.3+dfsg-1+deb13u1_i386.deb' added[0m
[0mI: new cache content 'libtiff-dev_4.7.0-3+deb13u2_i386.deb' added[0m
[0mI: new cache content 'gcc-14-for-host_14.2.0-19_i386.deb' added[0m
[0mI: new cache content 'gcc-for-host_4%3a14.2.0-1_i386.deb' added[0m
[0mI: new cache content 'libgdk-pixbuf-2.0-0_2.42.12+dfsg-4+deb13u1_i386.deb' added[0m
[0mI: new cache content 'comerr-dev_2.1-1.47.2-3+b10_i386.deb' added[0m
[0mI: new cache content 'libssl-dev_3.5.5-1~deb13u2_i386.deb' added[0m
[0mI: new cache content 'cpp-14-for-host_14.2.0-19_i386.deb' added[0m
[0mI: new cache content 'libtiffxx6_4.7.0-3+deb13u2_i386.deb' added[0m
[0mI: new cache content 'openssl_3.5.5-1~deb13u2_i386.deb' added[0m
[0mI: new cache content 'gfortran-for-host_4%3a14.2.0-1_i386.deb' added[0m
[0mI: new cache content 'gfortran-14-for-host_14.2.0-19_i386.deb' added[0m
[0mI: new cache content 'libcom-err2_1.47.2-3+b10_i386.deb' added[0m
[0mI: new cache content 'libtiff6_4.7.0-3+deb13u2_i386.deb' added[0m
[0mI: new cache content 'libpng16-16t64_1.6.48-1+deb13u4_i386.deb' added[0m
[0mI: new cache content 'cpp-for-host_4%3a14.2.0-1_i386.deb' added[0m
[0mI: Building the package[0m
[0mI: Running cd /build/r-base-4.6.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc  -sa && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-genchanges -S '-sa' > ../r-base_4.6.0-2~trixiecran.0_source.changes[0m
dpkg-buildpackage: info: source package r-base
dpkg-buildpackage: info: source version 4.6.0-2~trixiecran.0
dpkg-buildpackage: info: source distribution trixie-cran
dpkg-buildpackage: info: source changed by Johannes Ranke <jranke@uni-bremen.de>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-base using existing ./r-base_4.6.0.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building r-base in r-base_4.6.0-2~trixiecran.0.debian.tar.xz
dpkg-source: info: building r-base in r-base_4.6.0-2~trixiecran.0.dsc
 debian/rules binary
*** configure ***
#automake
#autoconf
dh_testdir
R_SHELL=/bin/bash				\
        mkdir_p="/bin/mkdir -p"                         \
MKDIR_P="/bin/mkdir -p"                         \
R_TEXI2DVICMD=emulation				\
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
R_BZIPCMD=/bin/bzip2				\
R_GZIPCMD="/bin/gzip -n"			\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
JAVA_HOME=/usr/lib/jvm/default-java             \
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
TAR=/bin/tar					\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
DD=/bin/dd					\
GREP=/bin/grep					\
FGREP="/bin/grep -F"				\
EGREP="/bin/grep -E"				\
SED=/bin/sed					\
GETWD="/bin/pwd"				\
CC=i686-linux-gnu-gcc					\
CXX=i686-linux-gnu-g++					\
F77=i686-linux-gnu-gfortran				\
FC=i686-linux-gnu-gfortran					\
CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"				\
CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"				\
FFLAGS="-g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong"				\
FCFLAGS="-g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
MAKEFLAGS="-j32"                        \
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --build=i686-linux-gnu	\
	    --host=i686-linux-gnu		\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-long-double       \
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build i686-linux-gnu
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for /bin/tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 6.8... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip -n
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... bison -y
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether i686-linux-gnu-gcc accepts -g... yes
checking for i686-linux-gnu-gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking whether i686-linux-gnu-gcc is a C23 compiler... no
checking whether i686-linux-gnu-gcc -std=gnu23 is a C23 compiler... yes
checking how to run the C preprocessor... i686-linux-gnu-gcc -std=gnu23 -E
looking for a modern Fortran compiler
checking for i686-linux-gnu-gfortran... i686-linux-gnu-gfortran
checking whether the compiler supports GNU Fortran... yes
checking whether i686-linux-gnu-gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether i686-linux-gnu-g++ accepts -g... yes
checking for i686-linux-gnu-g++ option to enable C++11 features... none needed
checking whether i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 can compile C++ code... yes
checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether i686-linux-gnu-gcc -std=gnu23 accepts -fvisibility... yes
checking whether i686-linux-gnu-g++ accepts -fvisibility... yes
checking whether i686-linux-gnu-gfortran accepts -fvisibility... yes
checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc
checking whether the compiler supports GNU Objective C... no
checking whether i686-linux-gnu-gcc accepts -g... no
checking whether i686-linux-gnu-gcc -std=gnu17 is a C17 compiler... yes
checking whether i686-linux-gnu-gcc -std=gnu90 is a C90 compiler... yes
checking whether i686-linux-gnu-gcc -std=gnu99 is a C99 compiler... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by i686-linux-gnu-gcc -std=gnu23... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B
checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop
checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for i686-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for i686-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for i686-linux-gnu-strip... i686-linux-gnu-strip
checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib
checking for gawk... /usr/bin/awk
checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc -std=gnu23 object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for i686-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if i686-linux-gnu-gcc -std=gnu23 supports -fno-rtti -fno-exceptions... no
checking for i686-linux-gnu-gcc -std=gnu23 option to produce PIC... -fPIC -DPIC
checking if i686-linux-gnu-gcc -std=gnu23 PIC flag -fPIC -DPIC works... yes
checking if i686-linux-gnu-gcc -std=gnu23 static flag -static works... yes
checking if i686-linux-gnu-gcc -std=gnu23 supports -c -o file.o... yes
checking if i686-linux-gnu-gcc -std=gnu23 supports -c -o file.o... (cached) yes
checking whether the i686-linux-gnu-gcc -std=gnu23 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... i686-linux-gnu-g++ -E
checking for ld used by i686-linux-gnu-g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the i686-linux-gnu-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for i686-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if i686-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if i686-linux-gnu-g++ static flag -static works... yes
checking if i686-linux-gnu-g++ supports -c -o file.o... yes
checking if i686-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the i686-linux-gnu-g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for i686-linux-gnu-gfortran option to produce PIC... -fPIC
checking if i686-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if i686-linux-gnu-gfortran static flag -static works... yes
checking if i686-linux-gnu-gfortran supports -c -o file.o... yes
checking if i686-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the i686-linux-gnu-gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... yes
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for i686-linux-gnu-gcc -std=gnu23 options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for egrep -e... (cached) /bin/grep -E
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking for C stack direction... down
checking size of long double... 12
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether i686-linux-gnu-gcc -std=gnu23 supports -c -o FILE.lo... yes
checking for i686-linux-gnu-gcc -std=gnu23 option to support OpenMP... -fopenmp
checking how to get verbose linking output from i686-linux-gnu-gfortran... -v
checking for Fortran libraries of i686-linux-gnu-gfortran...  -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from i686-linux-gnu-gcc -std=gnu23... -v
checking for C libraries of i686-linux-gnu-gcc -std=gnu23...  -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether i686-linux-gnu-gfortran appends underscores to external names... yes
checking whether i686-linux-gnu-gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether i686-linux-gnu-gfortran and i686-linux-gnu-gcc -std=gnu23 agree on int and double... yes
checking whether i686-linux-gnu-gfortran and i686-linux-gnu-gcc -std=gnu23 agree on double complex... yes
checking for i686-linux-gnu-gfortran option to support OpenMP... -fopenmp
checking whether i686-linux-gnu-g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking for ObjC runtime library... 
checking whether i686-linux-gnu-gcc accepts -fobjc-exceptions... no
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether i686-linux-gnu-g++  supports C++17 features with -std=gnu++17... yes
checking whether i686-linux-gnu-g++  supports C++20 features with -std=gnu++20... yes
checking whether i686-linux-gnu-g++  supports C++23 features with -std=gnu++23... yes
checking whether i686-linux-gnu-g++  supports C++26 features with -std=gnu++26... yes
checking whether i686-linux-gnu-g++ -std=gnu++20 can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking for i686-linux-gnu-g++ -std=gnu++20 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... yes
checking for atan2pi... yes
checking for cospi... yes
checking for exp10... yes
checking for pown... no
checking for sinpi... yes
checking for tanpi... yes
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for stpcpy... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether the base type of an enum can be specified... yes
checking whether mktime, gmtime, localtime work correctly in 2020... yes
checking whether mktime sets errno... yes
checking whether mktime works correctly after 2037... no
checking whether mktime works correctly before 1902... no
checking whether mktime works correctly in 1969... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
configure: searching for an external BLAS
configure: searching for BLAS in default libraries
checking for dgemm_... no
configure: searching for OpenBLAS
checking for sgemm_ in -lopenblas... no
configure: searching for BLIS
checking for sgemm_ in -lblis... no
configure: searching for ATLAS
checking for ATL_xerbla in -latlas... no
configure: searching for PhiPACK
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
configure: searching for IBM ESSL
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
configure: searching for generic BLAS library
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... yes
checking for tirpc/rpc/xdr.h... yes
checking for XDR library... -ltirpc
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for ZSTD_versionNumber in -lzstd... yes
checking for zstd.h... yes
checking if zstd version >= 1.3.3... yes
checking for ZSTD_decompressBound... yes
checking for libdeflate.h... yes
checking for libdeflate_alloc_compressor in -ldeflate... yes
yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 8.14.1
checking for curl/curl.h... yes
checking if libcurl is >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for i686-linux-gnu-gcc -std=gnu23 option to enable large file support... -D_FILE_OFFSET_BITS=64
checking for declarations of fseeko and ftello... yes
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for i686-linux-gnu-gfortran option to support OpenMP... (cached) -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a race-free mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for i686-linux-gnu-ranlib... (cached) i686-linux-gnu-ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by i686-linux-gnu-gcc -std=gnu23... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... (cached) yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.8.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for i686-pc-linux-gnu

  Source directory:            .
  Installation directory:      /usr

  C compiler:                  i686-linux-gnu-gcc -std=gnu23  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  Fortran fixed-form compiler: i686-linux-gnu-gfortran  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong

  Default C++ compiler:        i686-linux-gnu-g++ -std=gnu++20  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  Fortran free-form compiler:  i686-linux-gnu-gfortran  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong
  Obj-C compiler:	       i686-linux-gnu-gcc 

  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, BLAS(generic), LAPACK(generic), curl, libdeflate
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling, libdeflate for lazyload

  Capabilities skipped:        
  Options not enabled:         shared BLAS

  Recommended packages:        no

configure: WARNING: 32-bit build -- this is little tested
touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"			\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"			\
		FFLAGS="-g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong"			\
		CC=i686-linux-gnu-gcc				\
		CXX=i686-linux-gnu-g++				\
		F77=i686-linux-gnu-gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R_GZIPCMD="/bin/gzip -n"		\
		MAKEFLAGS="-j32"                \
		R
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/m4'
make[2]: Entering directory '/build/r-base-4.6.0/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tools'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/html'
make[3]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[2]: Entering directory '/build/r-base-4.6.0/etc'
make[2]: Leaving directory '/build/r-base-4.6.0/etc'
make[2]: Entering directory '/build/r-base-4.6.0/share'
make[2]: Leaving directory '/build/r-base-4.6.0/share'
make[2]: Entering directory '/build/r-base-4.6.0/src'
make[3]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Entering directory '/build/r-base-4.6.0/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Entering directory '/build/r-base-4.6.0/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/build/r-base-4.6.0/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/build/r-base-4.6.0/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.6.0/src/include'
make[3]: Entering directory '/build/r-base-4.6.0/src/extra'
make[4]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c regcomp.c -o regcomp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c regerror.c -o regerror.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c regexec.c -o regexec.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-ast.c -o tre-ast.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-compile.c -o tre-compile.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-mem.c -o tre-mem.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-parse.c -o tre-parse.o
i686-linux-gnu-gcc -std=gnu23 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c tre-stack.c -o tre-stack.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o
i686-linux-gnu-ranlib libtre.a
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[4]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[3]: Leaving directory '/build/r-base-4.6.0/src/extra'
make[3]: Entering directory '/build/r-base-4.6.0/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/build/r-base-4.6.0/src/appl'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c integrate.c -o integrate.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c interv.c -o interv.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c maxcol.c -o maxcol.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c optim.c -o optim.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pretty.c -o pretty.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c uncmin.c -o uncmin.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dpbfa.f -o dpbfa.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dpbsl.f -o dpbsl.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dpoco.f -o dpoco.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dpodi.f -o dpodi.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dpofa.f -o dpofa.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dposl.f -o dposl.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dqrdc.f -o dqrdc.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dqrdc2.f -o dqrdc2.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dqrls.f -o dqrls.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dqrsl.f -o dqrsl.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dqrutl.f -o dqrutl.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dsvdc.f -o dsvdc.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dtrco.f -o dtrco.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o  
i686-linux-gnu-ranlib libappl.a
make[4]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Entering directory '/build/r-base-4.6.0/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/build/r-base-4.6.0/src/nmath'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c mlutils.c -o mlutils.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c d1mach.c -o d1mach.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c i1mach.c -o i1mach.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fmax2.c -o fmax2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fmin2.c -o fmin2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fprec.c -o fprec.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fround.c -o fround.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c ftrunc.c -o ftrunc.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sign.c -o sign.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fsign.c -o fsign.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c imax2.c -o imax2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c imin2.c -o imin2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c chebyshev.c -o chebyshev.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c log1p.c -o log1p.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lgammacor.c -o lgammacor.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gammalims.c -o gammalims.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c stirlerr.c -o stirlerr.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bd0.c -o bd0.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gamma.c -o gamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lgamma.c -o lgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gamma_cody.c -o gamma_cody.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c beta.c -o beta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lbeta.c -o lbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c polygamma.c -o polygamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cospi.c -o cospi.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bessel_i.c -o bessel_i.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bessel_j.c -o bessel_j.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bessel_k.c -o bessel_k.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bessel_y.c -o bessel_y.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c choose.c -o choose.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c snorm.c -o snorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sexp.c -o sexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dgamma.c -o dgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pgamma.c -o pgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qgamma.c -o qgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rgamma.c -o rgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dbeta.c -o dbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pbeta.c -o pbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qbeta.c -o qbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rbeta.c -o rbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dunif.c -o dunif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c punif.c -o punif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qunif.c -o qunif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c runif.c -o runif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dnorm.c -o dnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pnorm.c -o pnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qnorm.c -o qnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rnorm.c -o rnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dlnorm.c -o dlnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c plnorm.c -o plnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qlnorm.c -o qlnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rlnorm.c -o rlnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c df.c -o df.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pf.c -o pf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qf.c -o qf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rf.c -o rf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dnf.c -o dnf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dt.c -o dt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pt.c -o pt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qt.c -o qt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rt.c -o rt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dnt.c -o dnt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dchisq.c -o dchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pchisq.c -o pchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qchisq.c -o qchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rchisq.c -o rchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rnchisq.c -o rnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dbinom.c -o dbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pbinom.c -o pbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qbinom.c -o qbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rbinom.c -o rbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rmultinom.c -o rmultinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dcauchy.c -o dcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pcauchy.c -o pcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qcauchy.c -o qcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rcauchy.c -o rcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dexp.c -o dexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pexp.c -o pexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qexp.c -o qexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rexp.c -o rexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dgeom.c -o dgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pgeom.c -o pgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qgeom.c -o qgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rgeom.c -o rgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dhyper.c -o dhyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c phyper.c -o phyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qhyper.c -o qhyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rhyper.c -o rhyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dnbinom.c -o dnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pnbinom.c -o pnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qnbinom.c -o qnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qnbinom_mu.c -o qnbinom_mu.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rnbinom.c -o rnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dpois.c -o dpois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c ppois.c -o ppois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qpois.c -o qpois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rpois.c -o rpois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dweibull.c -o dweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pweibull.c -o pweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qweibull.c -o qweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rweibull.c -o rweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dlogis.c -o dlogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c plogis.c -o plogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qlogis.c -o qlogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rlogis.c -o rlogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dnchisq.c -o dnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pnchisq.c -o pnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qnchisq.c -o qnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dnbeta.c -o dnbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pnbeta.c -o pnbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qnbeta.c -o qnbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pnf.c -o pnf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pnt.c -o pnt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qnf.c -o qnf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qnt.c -o qnt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c ptukey.c -o ptukey.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qtukey.c -o qtukey.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c toms708.c -o toms708.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c wilcox.c -o wilcox.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
i686-linux-gnu-ranlib libnmath.a
make[4]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Entering directory '/build/r-base-4.6.0/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Rembedded.c -o Rembedded.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dynload.c -o dynload.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c system.c -o system.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -c ./sys-unix.c -o sys-unix.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sys-std.c -o sys-std.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
i686-linux-gnu-ranlib libunix.a
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.6.0"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Entering directory '/build/r-base-4.6.0/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making flexiblas.d from flexiblas.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making inlined.d from inlined.c
making identical.d from identical.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making machine.d from machine.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making util.d from util.c
making unique.d from unique.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c CommandLineArgs.c -o CommandLineArgs.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Rdynload.c -o Rdynload.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Renviron.c -o Renviron.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c RNG.c -o RNG.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c agrep.c -o agrep.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c altclasses.c -o altclasses.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c altrep.c -o altrep.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c apply.c -o apply.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c arithmetic.c -o arithmetic.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c array.c -o array.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c attrib.c -o attrib.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bind.c -o bind.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c builtin.c -o builtin.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c character.c -o character.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c clippath.c -o clippath.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c coerce.c -o coerce.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c colors.c -o colors.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c complex.c -o complex.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c connections.c -o connections.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c context.c -o context.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cum.c -o cum.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dcf.c -o dcf.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c datetime.c -o datetime.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c debug.c -o debug.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c deparse.c -o deparse.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c devices.c -o devices.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dotcode.c -o dotcode.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dounzip.c -o dounzip.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dstruct.c -o dstruct.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c duplicate.c -o duplicate.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c edit.c -o edit.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c engine.c -o engine.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c envir.c -o envir.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c errors.c -o errors.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c eval.c -o eval.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c flexiblas.c -o flexiblas.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c format.c -o format.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gevents.c -o gevents.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gram.c -o gram.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gram-ex.c -o gram-ex.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c graphics.c -o graphics.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c grep.c -o grep.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c identical.c -o identical.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c inlined.c -o inlined.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c inspect.c -o inspect.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c internet.c -o internet.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c iosupport.c -o iosupport.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lapack.c -o lapack.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c list.c -o list.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c localecharset.c -o localecharset.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c logic.c -o logic.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c machine.c -o machine.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c main.c -o main.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c mapply.c -o mapply.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c mask.c -o mask.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c match.c -o match.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c memory.c -o memory.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c names.c -o names.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c objects.c -o objects.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c options.c -o options.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c paste.c -o paste.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c patterns.c -o patterns.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c platform.c -o platform.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c plot.c -o plot.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c plot3d.c -o plot3d.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c plotmath.c -o plotmath.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c print.c -o print.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c printarray.c -o printarray.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c printvector.c -o printvector.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c printutils.c -o printutils.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c qsort.c -o qsort.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c radixsort.c -o radixsort.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c random.c -o random.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c raw.c -o raw.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c registration.c -o registration.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c relop.c -o relop.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rlocale.c -o rlocale.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c saveload.c -o saveload.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c scan.c -o scan.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c seq.c -o seq.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c serialize.c -o serialize.o
seq.c: In function 'do_sequence':
seq.c:1167:47: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'R_xlen_t' {aka 'int'} [-Wformat=]
 1167 |             snprintf(msg, 99, "length(nvec) %ld < %ld = max(length(from), length(by))",
      |                                             ~~^
      |                                               |
      |                                               long int
      |                                             %d
 1168 |                      lengths_len, max_len);
      |                      ~~~~~~~~~~~               
      |                      |
      |                      R_xlen_t {aka int}
seq.c:1167:53: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'R_xlen_t' {aka 'int'} [-Wformat=]
 1167 |             snprintf(msg, 99, "length(nvec) %ld < %ld = max(length(from), length(by))",
      |                                                   ~~^
      |                                                     |
      |                                                     long int
      |                                                   %d
 1168 |                      lengths_len, max_len);
      |                                   ~~~~~~~            
      |                                   |
      |                                   R_xlen_t {aka int}
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sort.c -o sort.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c source.c -o source.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c split.c -o split.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sprintf.c -o sprintf.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c startup.c -o startup.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c subassign.c -o subassign.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c subscript.c -o subscript.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c subset.c -o subset.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c summary.c -o summary.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sysutils.c -o sysutils.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c times.c -o times.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c unique.c -o unique.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c util.c -o util.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c version.c -o version.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c g_alab_her.c -o g_alab_her.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c g_cntrlify.c -o g_cntrlify.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c g_fontdb.c -o g_fontdb.o
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c g_her_glyph.c -o g_her_glyph.o
i686-linux-gnu-gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c xxxpr.f -o xxxpr.o
i686-linux-gnu-gcc -std=gnu23 -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a    -lblas -lgfortran -lm -lquadmath   -lreadline  -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n   
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
mkdir -p -- /build/r-base-4.6.0/bin/exec
mkdir -p -- /build/r-base-4.6.0/lib
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
i686-linux-gnu-gcc -std=gnu23 -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Rmain.c -o Rmain.o
i686-linux-gnu-gcc -std=gnu23 -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Entering directory '/build/r-base-4.6.0/src/modules'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
making Rhttpd.d from Rhttpd.c
making Lapack.d from Lapack.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
making devX11.d from devX11.c
making rbitmap.d from rbitmap.c
making rotated.d from rotated.c
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Lapack.c -o Lapack.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c  ../../main/flexiblas.c -o flexiblas.o
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -fvisibility=hidden -c Rsock.c -o Rsock.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -fvisibility=hidden -c internet.c -o internet.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -fvisibility=hidden -c libcurl.c -o libcurl.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -fvisibility=hidden -c sock.c -o sock.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -fvisibility=hidden -c sockconn.c -o sockconn.o
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
i686-linux-gnu-gcc -std=gnu23 -I/usr/include/libpng16  -I/usr/include/i386-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c devX11.c -o devX11.o
i686-linux-gnu-gcc -std=gnu23 -I/usr/include/libpng16  -I/usr/include/i386-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rotated.c -o rotated.o
i686-linux-gnu-gcc -std=gnu23 -I/usr/include/libpng16  -I/usr/include/i386-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rbitmap.c -o rbitmap.o
i686-linux-gnu-gcc -std=gnu23 -I/usr/include/libpng16  -I/usr/include/i386-linux-gnu -I/usr/include/webp  -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dataentry.c -o dataentry.o
i686-linux-gnu-gcc -std=gnu23 -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR  
make[6]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
mkdir -p -- /build/r-base-4.6.0/modules
make[6]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
i686-linux-gnu-gcc -std=gnu23 -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext  -lX11 -lXt  -lR -lm 
i686-linux-gnu-gcc -std=gnu23 -shared -L"../../../lib" -Wl,-z,relro -o lapack.so  Lapack.o  flexiblas.o -lR  -llapack -lblas -lgfortran -lm -lquadmath
make[6]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[6]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
i686-linux-gnu-gcc -std=gnu23 -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff  -ljpeg  -lpng16  -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext  -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.6.0/src/modules'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/build/r-base-4.6.0/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/profile'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/build/r-base-4.6.0/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
mkdir -p -- ../../../library/tools/misc
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c text.c -o text.o
making Rsha256.d from Rsha256.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
making sha256.d from sha256.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Rmd5.c -o Rmd5.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c md5.c -o md5.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c signals.c -o signals.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c install.c -o install.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c getfmts.c -o getfmts.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c http.c -o http.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gramLatex.c -o gramLatex.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gramRd.c -o gramRd.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pdscan.c -o pdscan.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Rsha256.c -o Rsha256.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sha256.c -o sha256.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o Rsha256.o sha256.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making stubs.d from stubs.c
making sock.d from sock.c
making utils.d from utils.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c io.c -o io.o
making hashtab.d from hashtab.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c size.c -o size.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sock.c -o sock.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c stubs.c -o stubs.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.c -o utils.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c hashtab.c -o hashtab.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/fonts/Roboto
mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c axis_scales.c -o axis_scales.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c chull.c -o chull.o
making devQuartz.d from devQuartz.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c devices.c -o devices.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c stubs.c -o stubs.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c colors.c -o colors.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c clippath.c -o clippath.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c patterns.c -o patterns.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c mask.c -o mask.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c group.c -o group.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c devCairo.c -o devCairo.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c devPicTeX.c -o devPicTeX.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c devPS.c -o devPS.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c devQuartz.c -o devQuartz.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[8]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
mkdir -p -- ../../../../library/grDevices/libs
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cairoBM.c -o cairoBM.o
i686-linux-gnu-gcc -std=gnu23 -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff  -ljpeg  -lpng16  -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lcairo -lpng16  -L"../../../../../lib" -lR -lm 
make[10]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
making plot.d from plot.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c base.c -o base.o
making plot3d.d from plot3d.c
making stem.d from stem.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c graphics.c -o graphics.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c par.c -o par.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c plot.c -o plot.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c plot3d.c -o plot3d.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c stem.c -o stem.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
mkdir -p -- ../../../library/stats/doc
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making d2x2xk.d from d2x2xk.c
making chisqsim.d from chisqsim.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
making permdist.d from permdist.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kmeans.c -o kmeans.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c ansari.c -o ansari.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bandwidths.c -o bandwidths.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c chisqsim.c -o chisqsim.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c d2x2xk.c -o d2x2xk.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fexact.c -o fexact.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kendall.c -o kendall.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c ks.c -o ks.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c line.c -o line.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c smooth.c -o smooth.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c prho.c -o prho.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c swilk.c -o swilk.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c ksmooth.c -o ksmooth.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c loessc.c -o loessc.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c monoSpl.c -o monoSpl.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c isoreg.c -o isoreg.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Srunmed.c -o Srunmed.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dblcen.c -o dblcen.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c distance.c -o distance.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c hclust-utils.c -o hclust-utils.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c nls.c -o nls.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rWishart.c -o rWishart.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c HoltWinters.c -o HoltWinters.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c PPsum.c -o PPsum.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c arima.c -o arima.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c burg.c -o burg.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c filter.c -o filter.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c mAR.c -o mAR.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pacf.c -o pacf.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c starma.c -o starma.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c port.c -o port.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c family.c -o family.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sbart.c -o sbart.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c approx.c -o approx.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c loglin.c -o loglin.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lowess.c -o lowess.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c massdist.c -o massdist.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c splines.c -o splines.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lm.c -o lm.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c complete_cases.c -o complete_cases.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cov.c -o cov.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c deriv.c -o deriv.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fft.c -o fft.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fourier.c -o fourier.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c model.c -o model.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c optim.c -o optim.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c optimize.c -o optimize.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c integrate.c -o integrate.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c random.c -o random.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c distn.c -o distn.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c zeroin.c -o zeroin.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rcont.c -o rcont.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c influence.c -o influence.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c permdist.c -o permdist.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c bsplvd.f -o bsplvd.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c bvalue.f -o bvalue.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c bvalus.f -o bvalus.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c loessf.f -o loessf.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c ppr.f -o ppr.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c qsbart.f -o qsbart.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c sgram.f -o sgram.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c sinerp.f -o sinerp.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c sslvrg.f -o sslvrg.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c stxwx.f -o stxwx.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c hclust.f -o hclust.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c kmns.f -o kmns.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c eureka.f -o eureka.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c stl.f -o stl.o
i686-linux-gnu-gfortran -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -msse2 -mfpmath=sse  -c portsrc.f -o portsrc.o
i686-linux-gnu-gfortran -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong  -c lminfl.f -o lminfl.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o permdist.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making methods_list_dispatch.d from methods_list_dispatch.c
making init.d from init.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c do_substitute_direct.c -o do_substitute_direct.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c methods_list_dispatch.c -o methods_list_dispatch.o
making utils.d from utils.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c slot.c -o slot.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c class_support.c -o class_support.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c tests.c -o tests.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.c -o utils.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
byte-compiling package 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making typeset.d from typeset.c
making unit.d from unit.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c clippath.c -o clippath.o
making util.d from util.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gpar.c -o gpar.o
making viewport.d from viewport.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c grid.c -o grid.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c just.c -o just.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c layout.c -o layout.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c mask.c -o mask.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c matrix.c -o matrix.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c path.c -o path.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c register.c -o register.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c state.c -o state.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c typeset.c -o typeset.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c unit.c -o unit.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c util.c -o util.o
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c viewport.c -o viewport.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c splines.c -o splines.o
making splines.d from splines.c
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
making init.d from init.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c tcltk.c -o tcltk.o
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c tcltk_unix.c -o tcltk_unix.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/i386-linux-gnu -ltcl8.6 -L/usr/lib/i386-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
making init.d from init.c
making rngstream.d from rngstream.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rngstream.c -o rngstream.o
making fork.d from fork.c
i686-linux-gnu-gcc -std=gnu23 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fork.c -o fork.o
i686-linux-gnu-gcc -std=gnu23 -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
installing parsed NAMESPACE files
installing R bibliographies
installing R dictionaries
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[2]: Leaving directory '/build/r-base-4.6.0/src'
make[2]: Entering directory '/build/r-base-4.6.0/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/build/r-base-4.6.0'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"		\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"	\
		FFLAGS="-g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -D_REENTRANT"	\
		CC=i686-linux-gnu-gcc				\
		CXX=i686-linux-gnu-g++				\
		F77=i686-linux-gnu-gfortran			\
		R_GZIPCMD="/bin/gzip -n"		\
		MAKEFLAGS="-j32"                \
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/build/r-base-4.6.0/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
Copying source files
make[2]: Entering directory '/build/r-base-4.6.0/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/build/r-base-4.6.0/src/include'
make[2]: Entering directory '/build/r-base-4.6.0/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/build/r-base-4.6.0/src/nmath/standalone'
make[2]: Entering directory '/build/r-base-4.6.0/src/nmath/standalone'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.lo
make[2]: Entering directory '/build/r-base-4.6.0/src/nmath/standalone'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c std_unif.c -o std_unif.o
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.lo
i686-linux-gnu-gcc -std=gnu23 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c std_unif.c -o std_unif.lo
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
i686-linux-gnu-ranlib libRmath.a
make[2]: Leaving directory '/build/r-base-4.6.0/src/nmath/standalone'
i686-linux-gnu-gcc -std=gnu23 -shared -fopenmp -Wl,-z,relro -o libRmath.so  mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/build/r-base-4.6.0/src/nmath/standalone'
make[1]: Leaving directory '/build/r-base-4.6.0/src/nmath/standalone'
R_GZIPCMD="/bin/gzip -n" \
	/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/m4'
make[2]: Entering directory '/build/r-base-4.6.0/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tools'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/html'
make[3]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[2]: Entering directory '/build/r-base-4.6.0/etc'
make[2]: Leaving directory '/build/r-base-4.6.0/etc'
make[2]: Entering directory '/build/r-base-4.6.0/share'
make[2]: Leaving directory '/build/r-base-4.6.0/share'
make[2]: Entering directory '/build/r-base-4.6.0/src'
make[3]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Entering directory '/build/r-base-4.6.0/src/include'
make[4]: Entering directory '/build/r-base-4.6.0/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.6.0/src/include'
make[3]: Entering directory '/build/r-base-4.6.0/src/extra'
make[4]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[4]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[3]: Leaving directory '/build/r-base-4.6.0/src/extra'
make[3]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.6.0"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Entering directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/lib/libR.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/bin/exec/R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Entering directory '/build/r-base-4.6.0/src/modules'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
/build/r-base-4.6.0/modules/R_X11.so is unchanged
/build/r-base-4.6.0/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.6.0/src/modules'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/profile'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
all.R is unchanged
make[5]: '../../../library/tools/misc/wre.txt' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
installing parsed NAMESPACE files
installing R bibliographies
installing R dictionaries
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[2]: Leaving directory '/build/r-base-4.6.0/src'
make[2]: Entering directory '/build/r-base-4.6.0/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tests'
you should 'make docs' now ...
make[2]: Entering directory '/build/r-base-4.6.0/doc'
creating doc/NEWS
creating doc/NEWS.pdf
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/build/r-base-4.6.0/doc/html'
make[4]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[2]: Entering directory '/build/r-base-4.6.0/src/library'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
installing parsed Rd
make[4]: Entering directory '/build/r-base-4.6.0/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
writing package indices
make[4]: Entering directory '/build/r-base-4.6.0/src/library'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[2]: Leaving directory '/build/r-base-4.6.0/src/library'
make[1]: Leaving directory '/build/r-base-4.6.0'
/usr/bin/make javaconf
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/m4'
make[2]: Entering directory '/build/r-base-4.6.0/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tools'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/html'
make[3]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[2]: Entering directory '/build/r-base-4.6.0/etc'
make[2]: Leaving directory '/build/r-base-4.6.0/etc'
make[2]: Entering directory '/build/r-base-4.6.0/share'
make[2]: Leaving directory '/build/r-base-4.6.0/share'
make[2]: Entering directory '/build/r-base-4.6.0/src'
make[3]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Entering directory '/build/r-base-4.6.0/src/include'
make[4]: Entering directory '/build/r-base-4.6.0/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.6.0/src/include'
make[3]: Entering directory '/build/r-base-4.6.0/src/extra'
make[4]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[4]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[3]: Leaving directory '/build/r-base-4.6.0/src/extra'
make[3]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.6.0"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Entering directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/lib/libR.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/bin/exec/R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Entering directory '/build/r-base-4.6.0/src/modules'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
/build/r-base-4.6.0/modules/R_X11.so is unchanged
/build/r-base-4.6.0/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.6.0/src/modules'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/profile'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
all.R is unchanged
make[5]: '../../../library/tools/misc/wre.txt' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
installing parsed NAMESPACE files
installing R bibliographies
installing R dictionaries
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[2]: Leaving directory '/build/r-base-4.6.0/src'
make[2]: Entering directory '/build/r-base-4.6.0/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tests'
make[2]: Entering directory '/build/r-base-4.6.0'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/bin/java
Java version     : 21.0.10
Java home path   : /usr/lib/jvm/default-java
Java compiler    : /usr/lib/jvm/default-java/bin/javac
Java headers gen.: 
Java archive tool: /usr/lib/jvm/default-java/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
using C compiler: 'i686-linux-gnu-gcc (Debian 14.2.0-19) 14.2.0'
make[3]: Entering directory '/tmp/Rjavareconf.NdP9JD'
i686-linux-gnu-gcc -std=gnu23 -I"/build/r-base-4.6.0/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c conftest.c -o conftest.o
i686-linux-gnu-gcc -std=gnu23 -shared -L/build/r-base-4.6.0/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/r-base-4.6.0/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.NdP9JD'


JAVA_HOME        : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /build/r-base-4.6.0
Done.

make[2]: Leaving directory '/build/r-base-4.6.0'
make[1]: Leaving directory '/build/r-base-4.6.0'
touch make-arch-stamp
*** make-indep ***
/usr/bin/make -k docs
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/m4'
make[2]: Entering directory '/build/r-base-4.6.0/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tools'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/html'
make[3]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[2]: Entering directory '/build/r-base-4.6.0/etc'
make[2]: Leaving directory '/build/r-base-4.6.0/etc'
make[2]: Entering directory '/build/r-base-4.6.0/share'
make[2]: Leaving directory '/build/r-base-4.6.0/share'
make[2]: Entering directory '/build/r-base-4.6.0/src'
make[3]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Entering directory '/build/r-base-4.6.0/src/include'
make[4]: Entering directory '/build/r-base-4.6.0/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.6.0/src/include'
make[3]: Entering directory '/build/r-base-4.6.0/src/extra'
make[4]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[4]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[3]: Leaving directory '/build/r-base-4.6.0/src/extra'
make[3]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.6.0"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Entering directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/lib/libR.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/bin/exec/R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Entering directory '/build/r-base-4.6.0/src/modules'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
/build/r-base-4.6.0/modules/R_X11.so is unchanged
/build/r-base-4.6.0/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.6.0/src/modules'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/profile'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
all.R is unchanged
make[5]: '../../../library/tools/misc/wre.txt' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
installing parsed NAMESPACE files
installing R bibliographies
installing R dictionaries
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[2]: Leaving directory '/build/r-base-4.6.0/src'
make[2]: Entering directory '/build/r-base-4.6.0/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tests'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
make[4]: Entering directory '/build/r-base-4.6.0/doc/html'
make[4]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[2]: Entering directory '/build/r-base-4.6.0/src/library'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
installing parsed Rd
make[4]: Entering directory '/build/r-base-4.6.0/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
writing package indices
make[4]: Entering directory '/build/r-base-4.6.0/src/library'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library'
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[2]: Leaving directory '/build/r-base-4.6.0/src/library'
make[1]: Leaving directory '/build/r-base-4.6.0'
(cd doc/manual && /usr/bin/make html)
make[1]: Entering directory '/build/r-base-4.6.0/doc/manual'
make[2]: Entering directory '/build/r-base-4.6.0/doc/html'
make[2]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[1]: Leaving directory '/build/r-base-4.6.0/doc/manual'
/usr/bin/make info
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
/usr/bin/texi2any --enable-encoding -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -I. R-data.texi
/usr/bin/texi2any --enable-encoding -I. R-exts.texi
/usr/bin/texi2any --enable-encoding -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -I. R-lang.texi
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[1]: Leaving directory '/build/r-base-4.6.0'
(cd doc/manual && \
	MAKEFLAGS="-j32"                             \
	/usr/bin/make refman.pdf R-admin.pdf R-data.pdf R-exts.pdf \
		R-FAQ.pdf R-intro.pdf R-ints.pdf R-lang.pdf)
make[1]: Entering directory '/build/r-base-4.6.0/doc/manual'
creating doc/manual/version.tex
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-admin.texi
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-data.texi
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-exts.texi
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-FAQ.texi
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-ints.texi
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-lang.texi
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-intro.texi
collecting LaTeX docs for package 'splines' ...
collecting LaTeX docs for package 'grDevices' ...
collecting LaTeX docs for package 'compiler' ...
collecting LaTeX docs for package 'tools' ...
collecting LaTeX docs for package 'tcltk' ...
collecting LaTeX docs for package 'stats4' ...
collecting LaTeX docs for package 'base' ...
collecting LaTeX docs for package 'utils' ...
collecting LaTeX docs for package 'methods' ...
collecting LaTeX docs for package 'parallel' ...
collecting LaTeX docs for package 'grid' ...
collecting LaTeX docs for package 'graphics' ...
collecting LaTeX docs for package 'datasets' ...
collecting LaTeX docs for package 'stats' ...
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(./R-data.texientering extended mode
(./R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, pdf, fonts, fonts,This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
 glyphs, glyphs, page headings, page headings,
tables,
tables, conditionals, conditionals, indexing, indexing, sectioning, sectioning, toc, toc, environments, environments, defuns, defuns, macros, macros,
cross references,
cross references, insertions, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
)
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, localization,entering extended mode
(./R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts,This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
 formatting, microtype, formatting, and turning on texinfo input format. microtype, and turning on texinfo input format.))
Writing index file R-data.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex
Writing index file R-ints.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi)
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map)
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.mapConverting parsed Rd's to LaTeX Converting parsed Rd's to LaTeX  glyphs, page headings,
tables, conditionals,entering extended mode
(./R-exts.texi indexing, (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: sectioning, toc, pdf, environments,This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
 defuns, fonts, macros,
cross references, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,Converting parsed Rd's to LaTeX This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(./R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts, formatting, microtype, and turning on texinfo input format.)Converting parsed Rd's to LaTeX 
(/build/r-base-4.6.0/doc/manual/R-defs.texientering extended mode
(./R-intro.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex) (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:) pdf, [1{/var/lib/texmf/fonts/map/pdftex/u
pdmap/pdftex.mapConverting parsed Rd's to LaTeX  fonts,Converting parsed Rd's to LaTeX Converting parsed Rd's to LaTeX  glyphs, page headings,
tables, conditionals, indexing, sectioning,This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
 toc, environments, defuns, macros, glyphs,
cross references, page headings,
tables,Converting parsed Rd's to LaTeX  insertions,Converting parsed Rd's to LaTeX  conditionals, (/build/r-base-4.6.0/doc/manual/epsf.tex indexing,
This is `epsf.tex' v2.7.4 <14 February 2011>
) sectioning, localization, toc, environments, defuns, macros,
cross references, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,entering extended mode
(./R-admin.texi (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: formatting, microtype, and turning on texinfo input format. pdf, formatting, microtype,) fonts, and turning on texinfo input format.
Writing index file R-lang.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex)))
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.mapConverting parsed Rd's to LaTeX 
Writing index file R-exts.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex) formatting, microtype, and turning on texinfo input format.)
(/build/r-base-4.6.0/doc/manual/version.texi)) [1
Writing index file R-intro.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.mapConverting parsed Rd's to LaTeX  glyphs, page headings,Converting parsed Rd's to LaTeX 
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,Converting parsed Rd's to LaTeX Converting parsed Rd's to LaTeX  formatting, microtype, and turning on texinfo input format.)
Writing index file R-admin.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map
..
}] [2]
 [-1] Chapter 1
Writing index file R-ints.cp
[1] [2}]] [2] [3 [-1] Chapter 1]
Writing index file R-lang.cp
Chapter 2 [1 [4]] [5}] [2] [2]] [6 Cross reference values unknown; you must run TeX again. [-1] (Preface)]}
Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256
 @textbf storage.mode| 
[3]
Cross reference values unknown; you must run TeX again. Chapter 1 [1 [2] [7]] [-1]] (Acknowledgements)
Writing index file R-intro.cp
[2 [8 [4]] [1] [9] [3 Chapter 1 [2]]] [5 [10
Writing index file R-data.cp
Cross reference values unknown; you must run TeX again.]] [4 [3]] [11 [6] [5] [4] [12]] [7 Chapter 2 [6] [5 [13] [7]] [8]] [8
Underfull \hbox (badness 10000) in paragraph at lines 425--428
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

Underfull \hbox (badness 10000) in paragraph at lines 436--440
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6 Chapter 3 [14 [9]]]] Chapter 2 [7] [10 [15 [9] [8]]] [16 [9. [11]]] [10 [12 [17]] [10]] [11 [13]]
[18 [11] [14 [12]]]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1444--1444
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1445--1445
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1446--1446
 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the 
Ops
 (group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1447--1447
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19 [12]] Chapter 3 [13 [15}]] [13 [20]] [16 Chapter 3 [14]]]
[14 [-1] Chapter 1]
[17 [21 [15]] [15]] Chapter 2 [18 [1 [22 Chapter 4 Chapter 4 [16
[16]]]]] [19
Cross reference values unknown; you must run TeX again. [17] [23
Underfull \hbox (badness 10000) in paragraph at lines 1200--1212
@textrm (@texttt https://  www.  ibm.  com/  products/  informix[]@textrm )[]; 
[][]Oracle (@texttt https://  www.  oracle.  com[]@textrm )[];

Underfull \hbox (badness 10000) in paragraph at lines 1200--1212
@textrm (@texttt https://  www.  microsoft.  com/  sql-server/  []@textrm )[] o
n Win-dows) and aca-demic and
[17] [2]] [20 Chapter 5 [18] [18 [24]] [19]]] [21] Chapter 2 [25 [19 [20]] [22]
Underfull \hbox (badness 10000) in paragraph at lines 256--285
@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][]@textrm ),
[3]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1953--1953
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26 [21]] [23] [20] [27] [22 Chapter 4 [24]]] [28 [4] [21] [23 [25 [29]]]] Chapter 3 [30 [22] [26 [24 [5].] [31 Chapter 5] [23]]] [27 Chapter 4 [32]]
[25 [6
Underfull \hbox (badness 10000) in paragraph at lines 1758--1764
[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6] [24 Chapter 5 [33
[28]] [29]]] [26 Chapter 5 Chapter 7 [34 [25 [30]]]]
Chapter 6
Underfull \hbox (badness 10000) in paragraph at lines 613--618
@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[7 [35 [27 [31]]] Chapter 6 [28] [26] [36]] [29 [8 [32] [37 [27]]]] [30 [38 [33 [28]]]] [9 [39. [31} [29 [34]]]]] [2] Chapter 3 [10 Chapter 7 [40] Chapter 8 [32 [30]]] Chapter 6 [35] Chapter 9 [-1
[31]] (Acknowledgements)]
Underfull \hbox (badness 10000) in paragraph at lines 3046--3052
 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in
g glyphs (e.g., via
[41] [36 [11 [33 Chapter 1 [1]] [42]] (References) [37 [32]
Writing index file R-exts.cp
Cross reference values unknown; you must run TeX again.] [34 [12 [43]] [38 [2]]
Chapter 8 [35 (Function and variable index)] [33]] [44 [13 [39]]]
No file R-data.vrs.
(Concept index)] [34] [36 [45
No file R-data.cps.
[35]] [14 [40] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb] [3] [46>
[41] </build/r-base-4.6.0/doc/manual/images/hist.pdf]</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb> [37]] [42 [15> [47 </bui
ld/r-base-4.6.0/doc/manual/images/ecdf.pdf>] [38</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb]] </build/r-base-4.6.0/doc/manua
l/images/QQ.pdf>]> [43 [39</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb]] [48 [16 Chapter 7 [44] </build/r-base-4.6.0/doc/manual/images/ice.pdf [4>] [40>]] Chapter 7 [49
[41]]</usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb] Chapter 9 [42]> [17</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb [45 [5
Underfull \hbox (badness 10000) in paragraph at lines 3709--3716
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,
[50]]]> Chapter 8 [46]]
Underfull \hbox (badness 10000) in paragraph at lines 1479--1482
[]@textrm See [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_programming
_language# 

Underfull \hbox (badness 10000) in paragraph at lines 1479--1482
@texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial-
ized ver-sions of
Chapter 4< [43/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt1
0.pfb
Overfull \hbox (16.81319pt too wide) in paragraph at lines 3759--3763
 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [18 [51]]]> [47</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb Chapter 5 [19 Chapter 10] [44 Chapter 9 [48
[6]]>
]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb [52]] [45 [49>]]</usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb
[50 [20 [53]] Chapter 10] [51 [46]
Underfull \hbox (badness 10000) in paragraph at lines 513--516
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[7>]</usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb [54] [52></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb] [47] [21]>] [55 [53 [8 [48]]]] [54 [49
Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value
[] @textrm pairs (with @textsl value[] @textrm a

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[] func-tions used

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56]]
Overfull \hbox (14.27353pt too wide) in paragraph at lines 1754--1754
 []@smalltt KernSmooth    Functions for Kernel Smoothing Supporting Wand & Jone
s (1995)[] 

Overfull \hbox (14.27353pt too wide) in paragraph at lines 1755--1755
 []@smalltt MASS          Support Functions and Datasets for Venables and Riple
y
s MASS[] 
[22]] [50 [23 [55 [9] [57]]] [51]] [56} Chapter 6] [24] [58
[52 [2] [10]]] [57
] [53] [59] Chapter 11 [-1 [54 [25]] Chapter 1] [58]] [11 [55 (References) [60 [59 Chapter 7] [26]]]
(Function and variable index) [60]] [56 [61
No file R-lang.vrs.
(Concept index)] [61]
Output written on R-data.pdf (38 pages, 266597 bytes).
Transcript written on R-data.log.

Writing index file R-admin.cp
Writing index file R-admin.en
[1] [12
No file R-lang.cps.
[62] [27 [57 )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb]]]]
Underfull \hbox (badness 10000) in paragraph at lines 4469--4474
 @texttt blog.  r-project.  org/  2022/  04/  08/  enhancements-to-html-documen
tation/
[62>]</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb [58 Chapter 2 [28 [2 [13]]> [63]</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb]] [59> Cross reference values unknown; you must run TeX again.</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb] [29 [64 [14]>
[3 [60] [65]]]</usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb] [30> [66<
Underfull \hbox (badness 10000) in paragraph at lines 4726--4728
 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , 
@texttt identity[]@textrm ,
[61/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb]]] [4 Chapter 9 [15 [67>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb [62]]]> [31 [68</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb [63]] [5]>
 Chapter 10 [69 [16]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb] Chapter 11 [64
[70]>] [32 Chapter 12 [71</usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb]] [65 [6]> Chapter 13 [72]</usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb.]]
Underfull \hbox (badness 10000) in paragraph at lines 5139--5149
 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm 
(@texttt https://  CRAN.  R-project.  org/
[66>
Underfull \hbox (badness 10000) in paragraph at lines 1327--1328
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1328--1329
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1331--1333
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1333--1335
 @texttt ~/.R/Makevars.win64[]@textrm ,
[17 [73
[33]</usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb]]]> [7 (Function and variable index)
[74</usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb Chapter 12 [67]] [75]]
Underfull \hbox (badness 10000) in paragraph at lines 1341--1342
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1342--1343
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1345--1347
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1347--1349
 @texttt ~/.R/Makevars.win64[]@textrm ,
[18> [34
No file R-ints.vrs.
(Concept index)] [76</usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt12.pfb]] [8 [68>
No file R-ints.cps.
[77<]/usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt9.pfb]] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb> [35 [19> [9] [69</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb]]]> [70 [36</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmr10.pfb]] [20 [10> [71]</usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmr7.pfb]] [37>
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5603--5603
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72 [21</usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmr8.pfb] [11].>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mr9.pfb] [73] [12>
Writing index file R-FAQ.fn
[38</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pf
b [74]
Overfull \hbox (95.42339pt too wide) in paragraph at lines 1613--1613
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 1614--1614
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 1615--1615
 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 

Underfull \hbox (badness 10000) in paragraph at lines 1647--1654
@texttt org/  package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te
xtrm (@texttt https://  CRAN.  R-project.  org/
[22]]>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb [75
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1049--1049
 []         @texttt c++2b gnu++2b (from 2022.2) c++23 gnu++23 (at least from 20
24.0)[] 
[13>]</
usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb
Underfull \hbox (badness 10000) in paragraph at lines 3037--3051
@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[39 [76]>]</usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb [23]
Output written on R-lang.pdf (65 pages, 348314 bytes).
Transcript written on R-lang.log.
 [14]> </build/r-base-4.6.0/doc/manual/images/fig11.pdf>
[77]]</usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb [24 </build/r-base-4.6.0/doc/manual/images/fig12.pdf> [78> [40]</usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb] [79 [15]>]] [25 [80</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmtt12.pfb]]> Chapter 3 [16</usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmtt9.pfb [81 [41]]>] Chapter 8 [26 [42
Chapter 13] [82]] [17
Underfull \hbox (badness 10000) in paragraph at lines 6298--6303
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83
Overfull \hbox (32.18782pt too wide) in paragraph at lines 2058--2058
 []@texttt $ pkg-config --exists 
libtiff-4 >= 4.1.0
 --print-errors # check the status[] 
[27 Chapter 9] [43] Chapter 14] [84]] [18 [85] [44 Chapter 4 [28] [19]]]
Underfull \hbox (badness 10000) in paragraph at lines 6493--6498
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86] [45 Appendix A [87.] [20 [29]
 (Acknowledgments)
[46] [88]]] [47] [89
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2282--2282
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb [21
Output written on R-ints.pdf (80 pages, 425036 bytes).
Transcript written on R-ints.log.
] [90]> Appendix B] [91] [31</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb] Chapter 5 [92
[22]]> [32 [93</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb]] Chapter 6 [23 [94>]</usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb [33]] [95>]</usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb [34
[96>
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1865--1865
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24]]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb] [97>] [35</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb [25 [98]]]> Appendix C [99]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2689--2689
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2691--2691
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[36 [100]]>
Underfull \hbox (badness 6842) in paragraph at lines 2089--2097
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26 (References) [37 [101]]]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb
(Function and variable index) [102]>
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2830--2830
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[38</usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb
No file R-intro.vrs.
(Concept index)
Overfull \hbox (37.93651pt too wide) in paragraph at lines 2162--2162
 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran -
lquadmath[] 
[27 [103]]>
No file R-intro.cps.
[104]</usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb [39>]> [28</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb</usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb]
Underfull \hbox (badness 7221) in paragraph at lines 3036--3039
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[40>></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb]</usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb [29>
Overfull \hbox (60.93126pt too wide) in paragraph at lines 3100--3100
 []            @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX
20PICFLAGS)")[] 
[41]></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb]</usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb [30 [42>>]]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi7.pfb</usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb>< [43/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
mi9.pfb>]> [31</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb
 [44<]/usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb]>></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2614--2614
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt
t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[32>
Overfull \hbox (43.6852pt too wide) in paragraph at lines 3355--3355
 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[45></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb] Chapter 7] [33</usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>]</usr/share/tex
live/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb>> [46</usr/share/texlive/tex
mf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb [34]>]</usr/share/texlive/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmsl9.pfb [47></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmsltt10.pfb] [35>]</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb [48> Chapter 8 [36</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb]]> Chapter 9 [37</usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy9.pfb]></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmti10.pfb [49 [38]>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
9.pfb [39]>.
Appendix A</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb [40 [50]>
]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb [51This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb [41]></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb]> [52]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3192--3192
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[42
Output written on R-FAQ.pdf (49 pages, 351361 bytes).
Transcript written on R-FAQ.log.
] [53] [54 [43]]entering extended mode
(./R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: [55 [44 pdf,] fonts,] [56
Underfull \hbox (badness 10000) in paragraph at lines 3415--3417
[]@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https://  github.  
com/  ebiggers/  libdeflate[][]@textrm ) is used by
[45]]. [57
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3513--3513
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[] 
[46]] [47 [58
Output written on R-intro.pdf (107 pages, 573635 bytes).
Transcript written on R-intro.log.
]] [48 [59]] [49]
[60 [50]] [51 [61]] [52]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 4733--4733
 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62 [53]] glyphs, page headings, [63
Underfull \hbox (badness 10000) in paragraph at lines 4154--4157
[]@textrm There is also `Re-cur-sive-LA-PACK' ([][]@texttt https://  github.  c
om/  HPAC/  ReLAPACK?
[54
tables, conditionals,] indexing,] Appendix B [55 sectioning,] toc, environments, [56 defuns, [64 macros,]
cross references,] insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex [57
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,
Overfull \hbox (81.29893pt too wide) in paragraph at lines 4964--4964
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
[65]] [58]
Overfull \hbox (59.61772pt too wide) in paragraph at lines 4983--4983
 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[66] [59This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
]. [60 formatting, microtype,] [67 and turning on texinfo input format. Appendix C [61)]]
Writing index file R-data.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi [62
(/usr/share/texmf/tex/texinfo/txi-en.tex] [68) [63)
(/build/r-base-4.6.0/doc/manual/version.texi) [1]{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map]
[64 [69]]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4883--4883
 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER
TIONS[] 
[65entering extended mode
(./R-lang.texi] (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: [66 [70 pdf,] fonts,]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5077--5077
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
[67] [71
Overfull \hbox (122.85329pt too wide) in paragraph at lines 5164--5164
 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/pcre2-10.44-da
rwin.23-arm64.tar.xz[] 

Overfull \hbox (105.60722pt too wide) in paragraph at lines 5166--5166
 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/xz-5.6.3-darwi
n.23-arm64.tar.xz[] 
[68]]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 5294--5294
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20
-arm64.tar.gz[] 
[69]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5444--5444
 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2
3 24 25[] 

Overfull \hbox (53.86903pt too wide) in paragraph at lines 5460--5460
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5462--5462
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 5463--5463
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

Overfull \hbox (76.86378pt too wide) in paragraph at lines 5478--5478
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[72]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 5301--5301
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15.
6.tar.gz[] 

Overfull \hbox (38.79282pt too wide) in paragraph at lines 5340--5341
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][]@smallrm .| 
[70] [73] [71] [74] [72] [75]
Overfull \hbox (72.77429pt too wide) in paragraph at lines 5608--5608
[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| 

Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5645
@texttt OpenMathLib/  OpenBLAS/  releases[][]@textrm ) by sym-link-ing @texttt 
/opt/OpenBLAS/lib/libopenblas.dylib[]
[73.] [76
Underfull \hbox (badness 10000) in paragraph at lines 5720--5731
@texttt zulu-community/  ?  os=macos&  architecture=arm-64-bit&  package=jdk[][
] @textrm and from
[74]] [75 [77 glyphs,. page headings,]
tables, conditionals,This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
 indexing,]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5879--5879
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5.
dylib \[] 
[76 sectioning,] toc, environments,
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5891--5891
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[78 defuns,
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5884--5884
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0.
dylib \[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 5902--5902
 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 5925--5925
 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx-
version-min=11"[] 
[77 macros,]
cross references,] insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex [78
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,] [79 (Function and variable index) [79]]
No file R-admin.vrs.
(Environment variable index) [80].
No file R-admin.ens.
(Concept index) [81]
Underfull \hbox (badness 10000) in paragraph at lines 6058--6061
 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[80
No file R-admin.cps.
[82]entering extended mode
(./R-ints.texi] )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:> formatting, microtype,
Overfull \hbox (19.3769pt too wide) in paragraph at lines 6145--6145
 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[81 pdf,</usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb and turning on texinfo input format. fonts,])>
Writing index file R-lang.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi</usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb [82
(/usr/share/texmf/tex/texinfo/txi-en.tex>)</usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb)]
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map>
Overfull \hbox (53.86903pt too wide) in paragraph at lines 6290--6290
 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[83</usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb]></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr8.pfb
Overfull \hbox (13.62822pt too wide) in paragraph at lines 6355--6355
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[84></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmr9.pfb]>
Overfull \hbox (48.12035pt too wide) in paragraph at lines 6432--6432
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 6444--6444
 []@texttt warning: argument 1 value 
18446744073709551615
 exceeds maximum object[] 

Overfull \hbox (111.35591pt too wide) in paragraph at lines 6459--6459
 []    @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj)
, (double) nelem);[] 
Writing index file R-exts.ap
[85</usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsl10.pfb]></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsltt10.pfb>
Underfull \hbox (badness 10000) in paragraph at lines 6512--6513
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[86</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy10.pfb>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
i10.pfb> [87</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb
]><./usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb [88>]</usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfbThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
> glyphs,</usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb page headings, [89
tables, conditionals,> indexing,] sectioning, toc, [90 environments, defuns,] macros,
cross references, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex [91
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,]
Writing index file R-exts.ae

Overfull \hbox (19.3769pt too wide) in paragraph at lines 7004--7004
 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[92]entering extended mode
(./R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: [93 pdf,] fonts, formatting, microtype, and turning on texinfo input format. Chapter 2 [94)]
Writing index file R-ints.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex) [95
Output written on R-admin.pdf (85 pages, 474811 bytes).
Transcript written on R-admin.log.
)
(/build/r-base-4.6.0/doc/manual/version.texi)] [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map [96] [97] [98] [99] [100.]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
 [101 glyphs, page headings,
tables,] conditionals, indexing, sectioning, [102 toc, environments,] defuns, macros,
cross references, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex [103
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,]
[104]entering extended mode
(./R-intro.texi [105 (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:] formatting, microtype, pdf, and turning on texinfo input format. fonts,)
(/build/r-base-4.6.0/doc/manual/R-defs.texi [106
(/usr/share/texmf/tex/texinfo/txi-en.tex)]) [1{/var/lib/texmf/fonts/map/pdftex/u
pdmap/pdftex.map
Underfull \hbox (badness 7451) in paragraph at lines 8147--8161
@texttt \code{"\link[=abc-class]{abc}"}[] @textrm and @texttt \code{\link[=xyz-
methods]{xyz}}[] @textrm could
[107] [108]
Underfull \hbox (badness 10000) in paragraph at lines 8269--8276
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[109] [110] glyphs, page headings,
tables, conditionals, indexing, sectioning,
Underfull \hbox (badness 10000) in paragraph at lines 8485--8490
 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[111 toc,} environments,]] defuns, [2 macros,] (/build/r-base-4.6.0/doc/manual/R-data.toc
cross references,. insertions,)
(/build/r-base-4.6.0/doc/manual/R-data.toc (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, [112.] [-1]) [-2]
(/build/r-base-4.6.0/doc/manual/R-data.toc)
(/build/r-base-4.6.0/doc/manual/R-data.toc [113]) (Acknowledgements)
(/build/r-base-4.6.0/doc/manual/R-data.aux formatting, microtype, and turning on texinfo input format.)) [114
Writing index file R-intro.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi [1]
(/usr/share/texmf/tex/texinfo/txi-en.tex)] Chapter 1 [2])
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map [115
Writing index file R-data.cp
[3]] [4 Chapter 3 [116]] [5] [117]
Underfull \hbox (badness 10000) in paragraph at lines 425--428
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

Underfull \hbox (badness 10000) in paragraph at lines 436--440
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6] [118 Chapter 2 [7]] [8 [119]] [9] [120 [10]] [121 [11]]
[122 [12]] [13
Overfull \hbox (43.6852pt too wide) in paragraph at lines 9339--9339
 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[123] Chapter 3 [14]] Chapter 4 [124] [15 [125]] Chapter 4
[16] [126]
Underfull \hbox (badness 10000) in paragraph at lines 1200--1212
@textrm (@texttt https://  www.  ibm.  com/  products/  informix[]@textrm )[]; 
[][]Oracle (@texttt https://  www.  oracle.  com[]@textrm )[];

Underfull \hbox (badness 10000) in paragraph at lines 1200--1212
@textrm (@texttt https://  www.  microsoft.  com/  sql-server/  []@textrm )[] o
n Win-dows) and aca-demic and
[17]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9608--9608
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[127 [18]]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 9649--9649
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[128 [19]]}] [2] (/build/r-base-4.6.0/doc/manual/R-lang.toc
Overfull \hbox (20.53261pt too wide) in paragraph at lines 9755--9755
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 9785--9794
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[129 [20)
(/build/r-base-4.6.0/doc/manual/R-lang.toc]]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
 [130 [21 [-1]]] [22 [131] Chapter 5] [23] [-2 [132]
Underfull \hbox (badness 10000) in paragraph at lines 1758--1764
[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24]]) [-3 Chapter 7 [25entering extended mode
(./R-admin.texi] [-4]
(/build/r-base-4.6.0/doc/manual/R-lang.toc
Underfull \hbox (badness 10000) in paragraph at lines 10046--10051
@smalltt developer.  apple.  com/  documentation/  xcode/  diagnosing-memory-th
read-and-crash-issues-early[][]@smallrm .

Underfull \hbox (badness 10000) in paragraph at lines 10044--10057
@texttt controlling-code-generation[][]@textrm , [][]@texttt https://  clang.  
llvm.  org/  docs/  AddressSanitizer.

Overfull \hbox (48.90796pt too wide) in paragraph at lines 10061--10062
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[133])
(/build/r-base-4.6.0/doc/manual/R-lang.toc (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:] pdf, [26 fonts, [134]) Chapter 1]
(/build/r-base-4.6.0/doc/manual/R-lang.aux [27] [28]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 10212--10212
 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 

Overfull \hbox (32.81921pt too wide) in paragraph at lines 10238--10241
[][]@smalltt https://  developer.  apple.  com/  documentation/  xcode/  diagno
sing-memory-thread-and-crash-issues-early[][]@smallrm .| 

Overfull \hbox (33.15736pt too wide) in paragraph at lines 10251--10254
[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[135 [29])] Chapter 8 [30
Writing index file R-lang.cp
Chapter 2 [1] [136] Chapter 9]
[31] [2] (References)
Underfull \hbox (badness 10000) in paragraph at lines 10350--10354
[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][]

Overfull \hbox (112.66945pt too wide) in paragraph at lines 10366--10366
 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 10367--10367
 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

Overfull \hbox (181.6537pt too wide) in paragraph at lines 10370--10370
 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

Overfull \hbox (37.93651pt too wide) in paragraph at lines 10378--10378
 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 

Overfull \hbox (2.03816pt too wide) in paragraph at lines 10417--10421
[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.
[137 [32]]} (Function and variable index) [33]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256
 @textbf storage.mode| 
[3] [2
(/build/r-base-4.6.0/doc/manual/R-data.vrs] (/build/r-base-4.6.0/doc/manual/R-ints.toc
Overfull \hbox (72.42863pt too wide) in paragraph at lines 10440--10440
 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10485--10485
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10488--10488
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[138])
(/build/r-base-4.6.0/doc/manual/R-ints.toc] [139 [4 [34 [-1]]]]. [5 glyphs,. page headings,
Overfull \hbox (26.43913pt too wide) in paragraph at lines 10567--10567
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[140]
tables,) conditionals, (Concept index) [35 indexing, [-2] [141 sectioning,]]
(/build/r-base-4.6.0/doc/manual/R-data.cps] [6 toc,) [-3] environments,
(/build/r-base-4.6.0/doc/manual/R-ints.toc)] defuns,
(/build/r-base-4.6.0/doc/manual/R-ints.toc [142 macros,
cross references,] insertions,) (/build/r-base-4.6.0/doc/manual/epsf.tex [36 [7
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,])] Chapter 1 [37]
(/build/r-base-4.6.0/doc/manual/R-ints.aux
Underfull \hbox (badness 10000) in paragraph at lines 10802--10804
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[143 )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb [8]]></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb Chapter 3 [9
Overfull \hbox (124.16682pt too wide) in paragraph at lines 10858--10858
 []@texttt boot.f:61: warning: type of 
ddot
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (147.16158pt too wide) in paragraph at lines 10877--10877
 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (141.41289pt too wide) in paragraph at lines 10888--10888
 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10908--10908
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10917--10917
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (43.6852pt too wide) in paragraph at lines 10918--10918
 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
[144)]] Chapter 5> [145]</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb [10
Writing index file R-ints.cp
[1]> formatting, microtype,</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb] and turning on texinfo input format. [11>) [146</usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb [2]] [12>
Writing index file R-admin.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb]]
(/usr/share/texmf/tex/texinfo/txi-en.tex)) [3
(/build/r-base-4.6.0/doc/manual/version.texi>) [13 [1 [147{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map]]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb]> [14</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb [4 [148]]]> [15</u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb [5] [149]></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb] [16]> [6</usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb [150]]
[17></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb} [7] [151] (/build/r-base-4.6.0/doc/manual/R-FAQ.toc]]>)
(/build/r-base-4.6.0/doc/manual/R-FAQ.toc [18</usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb [152 [8]>]</usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb] [19 [-1> [153 [9]]]] [20 [10 [154]]] [21
[155 [11]] [-2]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 11720--11720
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 11784--11784
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[156 [22] [12]]] [157 [23]) [-3] [13 Chapter 4 [24
Overfull \hbox (60.93126pt too wide) in paragraph at lines 11950--11950
 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[158]]
(/build/r-base-4.6.0/doc/manual/R-FAQ.toc]])
(/build/r-base-4.6.0/doc/manual/R-FAQ.toc [14 [25 [159]]] [15 [26]]) Chapter 1 [160
(/build/r-base-4.6.0/doc/manual/R-FAQ.aux
Output written on R-data.pdf (41 pages, 302785 bytes).
Transcript written on R-data.log.
 [16 [27] [161]]] [17 [162 Chapter 5
[28]]] [29].) [163
[18 [30]]] Chapter 2
Overfull \hbox (37.93651pt too wide) in paragraph at lines 12390--12390
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[164 [1
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1444--1444
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1445--1445
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1446--1446
 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the 
Ops
 (group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1447--1447
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19]] [31]] [165 [2 [20]]] [32 [166]] [21
Underfull \hbox (badness 10000) in paragraph at lines 256--285
@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][]@textrm ),
[3 [33]] [167] [22 [4] [34}]]]] [2] (/build/r-base-4.6.0/doc/manual/R-intro.toc Chapter 6 [168 [35 [23 [5)]
(/build/r-base-4.6.0/doc/manual/R-intro.toc]]] [24 [36]] [169 [-1 [6 Chapter 2 [25 [37]]]]]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1953--1953
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26 [38
Underfull \hbox (badness 10000) in paragraph at lines 613--618
@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[7]]] [170 [27] [39 [-2] [8] [28] [171]]] [40 [9 [29]]]
[41. Chapter 3 [-3 [10 Chapter 3] [30]] [42]] [11. [31]] [43) [-4 Chapter 4 [32] [12 Chapter 7 [44]]]] [172
(/build/r-base-4.6.0/doc/manual/R-intro.toc [13])
(/build/r-base-4.6.0/doc/manual/R-intro.toc [33].] [14 [45 Chapter 5] [34]] Chapter 8 [46 [173] [15
Chapter 6] [35]] [47) (Preface)
(/build/r-base-4.6.0/doc/manual/R-intro.aux [16 [174] [36 Chapter 9 [48]]]] [37 [49 [17]]]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 13320--13320
 []        @texttt Rf_error("value is not a numeric vector with at least one el
ement");[] 
[175
[50 [38
Underfull \hbox (badness 10000) in paragraph at lines 1479--1482
[]@textrm See [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_programming
_language# 

Underfull \hbox (badness 10000) in paragraph at lines 1479--1482
@texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial-
ized ver-sions of
Chapter 4 [18]]] Chapter 10 [51]] Chapter 5 [19] [39)] [52 Chapter 1 [1 [20 [40]]]]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 13395--13395
 []    @texttt if(ign == NA_LOGICAL) Rf_error("
ignore_quotes
 must be TRUE or FALSE");[] 
[176.
Underfull \hbox (badness 10000) in paragraph at lines 3046--3052
 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in
g glyphs (e.g., via
[41 [53] [21]
Writing index file R-intro.cp
[2]] [42] [54]] [3
Overfull \hbox (14.27353pt too wide) in paragraph at lines 1754--1754
 []@smalltt KernSmooth    Functions for Kernel Smoothing Supporting Wand & Jone
s (1995)[] 

Overfull \hbox (14.27353pt too wide) in paragraph at lines 1755--1755
 []@smalltt MASS          Support Functions and Datasets for Venables and Riple
y
s MASS[] 
[22] [43] [23] [55]] [4 [44] Chapter 6 [24] [56]
Underfull \hbox (badness 10000) in paragraph at lines 13456--13461
[]@textrm Some use-ful pre-allocated val-ues are avail-able as @texttt R_BlankS
calarString[]@textrm ,
[177 [45 [5]] [25]] [57] [46] Chapter 7 [26] Chapter 2 [6] [58] [47 [7]] [27] (References) [59]] [8
(Function and variable index) [60] [48 (/build/r-base-4.6.0/doc/manual/R-lang.vrs] [28]] Chapter 7 [49
Underfull \hbox (badness 7576) in paragraph at lines 13635--13643
[]@textrm Some con-ve-nience func-tions for work-ing with pairlist ob-jects in-
clude @texttt Rf_
[178] [29 [9]
Underfull \hbox (badness 10000) in paragraph at lines 3709--3716
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,
[50]]
[61] [30
Overfull \hbox (16.81319pt too wide) in paragraph at lines 3759--3763
 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51 [10]]] [179]) [31] [52 [11]]] (Concept index) [62 [180 [32 [53] (/build/r-base-4.6.0/doc/manual/R-lang.cps [12]]]] [181]
[33 [54] Chapter 3 [13]]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 13998--13998
 []            @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T
AG(args)));[] 
[182 [34]] [55)
[14].] [35]
Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value
[] @textrm pairs (with @textsl value[] @textrm a

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[] func-tions used

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56 [15] [183 [36] Chapter 4] [16] [57]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 14170--14170
 []    @texttt if(!Rf_isEnvironment(rho)) Rf_error("
rho
 should be an environment");[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 14198--14198
 []    @texttt if(!Rf_isEnvironment(rho)) Rf_error("
rho
 should be an environment");[] 
[184] [37] [63] [17 [185 [58]]
Writing index file R-FAQ.fn
[38]]
[64] Chapter 5
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14311--14311
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[186] [18] [59] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb [19]] [187
Underfull \hbox (badness 10000) in paragraph at lines 3037--3051
@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[39]></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb] [20 [60
Overfull \hbox (32.18782pt too wide) in paragraph at lines 14435--14435
 []    @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t
heta)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14442--14442
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (60.93126pt too wide) in paragraph at lines 14443--14443
 []        @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)),
 rho, TRUE));[] 
[188]]]> [21</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb [40] [61
Overfull \hbox (32.18782pt too wide) in paragraph at lines 14497--14497
 []    @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t
heta)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14510--14510
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (60.93126pt too wide) in paragraph at lines 14511--14511
 []        @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)),
 rho, TRUE));[] 
[189>]]</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb [22]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14611--14611
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[190>]]</usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb
Underfull \hbox (badness 10000) in paragraph at lines 4469--4474
 @texttt blog.  r-project.  org/  2022/  04/  08/  enhancements-to-html-documen
tation/
[62 [41>] [191</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb [23] Chapter 8 [42]]] [63>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb Chapter 9 [43 [24]> [64 [192</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb]]] [44 [65>]]</u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb
[25 [66 [45>]]</usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14793--14793
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[193] Chapter 9 [67 (Acknowledgments)
[46]]]> [47] [26</usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb]> [68</usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb>] [27}</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb>] Chapter 10] [69 Chapter 6 [28 [2]]</usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb] Chapter 11 (/build/r-base-4.6.0/doc/manual/R-admin.toc
[70
Overfull \hbox (60.93126pt too wide) in paragraph at lines 14885--14885
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"),
 R_NilValue);[] 
[194>]>)
(/build/r-base-4.6.0/doc/manual/R-admin.toc] Chapter 12 [29 [71</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb</usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt10.pfb]]> Chapter 13 [72></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb]</usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt12.pfb [-1></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb [30 [73>
Overfull \hbox (72.42863pt too wide) in paragraph at lines 15022--15022
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[195</usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb]]>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb]> (Function and variable index)
[74 [31>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb [75]] (/build/r-base-4.6.0/doc/manual/R-ints.vrs [-2> Chapter 7 [196 [32</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b]]]></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb) [33 [-3>]</usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb]
(/build/r-base-4.6.0/doc/manual/R-admin.tocThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
> [34)</usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb
(/build/r-base-4.6.0/doc/manual/R-admin.toc [76]>
Chapter 8 [35</usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb Chapter 6 [197]]>]</usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb) Chapter 1
(/build/r-base-4.6.0/doc/manual/R-admin.aux [36> [198</usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb]]> [77</usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb </build/r-base-4.6.0/doc/manual/images/hist.pdf>>] [37 [199)])</usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb </bui
ld/r-base-4.6.0/doc/manual/images/ecdf.pdf
(Concept index)> [78]> [38entering extended mode
(./R-data.texi]]</usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb (/build/r-base-4.6.0/doc/manual/R-ints.cps </build/r-base-4.6.0/doc/manua
l/images/QQ.pdf> (/usr/share/texmf/tex/texinfo/texinfo.tex
Writing index file R-admin.cp
Writing index file R-admin.en
[1
Output written on R-lang.pdf (70 pages, 390883 bytes).
Transcript written on R-lang.log.

Loading texinfo [version 2023-09-19.19]:> [200 [39 pdf,]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb]]>) fonts, </build/r-base-4.6.0/doc/manual/images/ice.pdf> [79 [40 Chapter 2 [2]
[41]]] Chapter 9 [42] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb [3>.</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb]
Writing index file R-exts.for
[201] [43> [4</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb] [202]]> Chapter 10 [44</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb] [5></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb] [45></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb [203] [6]>] [46]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb [7 [204>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb [47]>] [8</u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb] [48 [205>]] [9
Output written on R-FAQ.pdf (51 pages, 368482 bytes).
Transcript written on R-FAQ.log.
 [206</usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb]] [49]>
Overfull \hbox (20.69044pt too wide) in paragraph at lines 16042--16042
 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

Underfull \hbox (badness 10000) in paragraph at lines 16060--16065
@texttt com/  content/  www/  us/  en/  docs/  fortran-compiler/  developer-gui
de-reference/
[207</usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb] [10 [50>]] [208</usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb] [51 [11> glyphs, page headings,</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb]]
tables, conditionals, [12 indexing,> [209]</usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmti9.pfb sectioning,
[52] toc,> environments,]</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb defuns, macros, [53
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1049--1049
 []         @texttt c++2b gnu++2b (from 2022.2) c++23 gnu++23 (at least from 20
24.0)[] 
[13]>
cross references, Chapter 11 [54]] insertions, [210 (/build/r-base-4.6.0/doc/manual/epsf.tex</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb
This is `epsf.tex' v2.7.4 <14 February 2011>
) [14 localization,]> [55</usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb]]> [15 [56]] Chapter 3 [16] [57 [211]] [17 [58]] formatting, microtype, [18 and turning on texinfo input format.] Chapter 4 [19) [59]] [212
Writing index file R-data.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi.]
(/usr/share/texmf/tex/texinfo/txi-en.tex) [60 [20)]
(/build/r-base-4.6.0/doc/manual/version.texi) [1.]{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map
Underfull \hbox (badness 10000) in paragraph at lines 4726--4728
 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , 
@texttt identity[]@textrm ,
[61 [21] [213] [62] Chapter 5
[22]] [63] Chapter 6 [23
Output written on R-ints.pdf (84 pages, 473625 bytes).
Transcript written on R-ints.log.
] [64 [214]] [65]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1865--1865
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24 [215]]
Underfull \hbox (badness 10000) in paragraph at lines 5139--5149
 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm 
(@texttt https://  CRAN.  R-project.  org/
[66 [25] [216]] Chapter 12 [67]
Underfull \hbox (badness 6842) in paragraph at lines 2089--2097
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
Underfull \hbox (badness 10000) in paragraph at lines 16873--16877
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[217 [68]]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 2162--2162
 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran -
lquadmath[] 
[27] [69 [28]] [70 [29 [218]]] [30 [71] [219] [31]]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5603--5603
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2614--2614
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt
t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[32 [220] Chapter 7 [73 [33]]] [74 [34]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 17159--17159
 []                     @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd
ata);[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 17166--17166
 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 17195--17195
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[221]] [75] [35 [76 [222]]] Chapter 8 [36 </build/r-base-4.6.0/doc/manual/images/fig11.pdf>]
[77 Chapter 9 [37] [223]] </build/r-base-4.6.0/doc/manual/images/fig12.pdf> [38 [78]] [79] [39 [224]]
Appendix A [40] [80] [225 [81]] [41]
Chapter 13 [82 [226]]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3192--3192
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[42]
Underfull \hbox (badness 10000) in paragraph at lines 6298--6303
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83] Chapter 14 [84] [227 [43] [85]] [228]
Underfull \hbox (badness 10000) in paragraph at lines 6493--6498
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86 [44] [229 Appendix A] [87]] [230 [88
Underfull \hbox (badness 10000) in paragraph at lines 3415--3417
[]@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https://  github.  
com/  ebiggers/  libdeflate[][]@textrm ) is used by
[45]]] [89]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3513--3513
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[] 
[46 [231 [90]]] Appendix B [91] [47 [92]]
Underfull \hbox (badness 10000) in paragraph at lines 18004--18014
@texttt R_BindingTypeValue[]@textrm , @texttt R_BindingTypeMissing[]@textrm , @
texttt R_BindingTypeDelayed[]@textrm , @texttt R_
[232 [93 [48]]] [94] [49 [233 [95]]] [234] Chapter 7 [235] [50
[96] [236]] [97 Chapter 8 [237 [51]]] [98] [238 Appendix C [52 [99]]] [100
Writing index file R-exts.em
[239 [53]]] (References) [101]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 18615--18615
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[240
Underfull \hbox (badness 10000) in paragraph at lines 4154--4157
[]@textrm There is also `Re-cur-sive-LA-PACK' ([][]@texttt https://  github.  c
om/  HPAC/  ReLAPACK?
[54
(Function and variable index) [102]]] (/build/r-base-4.6.0/doc/manual/R-intro.vrs
 Appendix B [55]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 18658--18658
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 18673--18673
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[241] [56][103This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
] [57 [242]] [243] [58 [104] [244 [59]]]. [60] [245) Appendix C [61]]entering extended mode
(./R-lang.texi [246 [62 (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:]] pdf, [63 [247 (Concept index) [105 fonts,]]. [248]
[64] (/build/r-base-4.6.0/doc/manual/R-intro.cps] [249]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4883--4883
 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER
TIONS[] 
[65
(Function and variable index)] [250
[106] [66]
No file R-exts.vrs.
(API index) [251]]) [107]
No file R-exts.aps.
(Fortran API index) [252]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5077--5077
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
[67 )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb]
No file R-exts.fors.
(Experimental API index) [253]>
Overfull \hbox (122.85329pt too wide) in paragraph at lines 5164--5164
 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/pcre2-10.44-da
rwin.23-arm64.tar.xz[] 

Overfull \hbox (105.60722pt too wide) in paragraph at lines 5166--5166
 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/xz-5.6.3-darwi
n.23-arm64.tar.xz[] 
l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-pg'.</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb
No file R-exts.aes.
(Embedding API index) [68 [254]]>
No file R-exts.ems.
(Concept index) [255]</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb
Overfull \hbox (60.93126pt too wide) in paragraph at lines 5294--5294
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20
-arm64.tar.gz[] 

Overfull \hbox (32.18782pt too wide) in paragraph at lines 5301--5301
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15.
6.tar.gz[] 
[69
No file R-exts.cps.
[256]]></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb>
Overfull \hbox (38.79282pt too wide) in paragraph at lines 5340--5341
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][]@smallrm .| 
[70</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb> [71></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb]>> glyphs,</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pf
b page headings,
tables, [72 conditionals,> indexing,></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi7.pfb] sectioning,.> toc,<>/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb environments, defuns, macros,</usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb
Overfull \hbox (72.77429pt too wide) in paragraph at lines 5608--5608
[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| 

Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5645
@texttt OpenMathLib/  OpenBLAS/  releases[][]@textrm ) by sym-link-ing @texttt 
/opt/OpenBLAS/lib/libopenblas.dylib[]
[73>
cross references,> insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex]</usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,>></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb
Underfull \hbox (badness 10000) in paragraph at lines 5720--5731
@texttt zulu-community/  ?  os=macos&  architecture=arm-64-bit&  package=jdk[][
] @textrm and from
[74></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb]</usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb> [75]></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmsl10.pfb
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5879--5879
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5.
dylib \[] 
[76</usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb>]></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmsl9.pfb formatting,</usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb microtype, and turning on texinfo input format.></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsltt10.pfb>
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5884--5884
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0.
dylib \[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 5902--5902
 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 5925--5925
 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx-
version-min=11"[] 
[77)</usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb]>
Writing index file R-lang.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi</usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsy10.pfb [78
(/usr/share/texmf/tex/texinfo/txi-en.tex)>></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy7.pfb)
(/build/r-base-4.6.0/doc/manual/version.texi])</usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmsy7.pfb [1 (Function and variable index) [79{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map]>}
(/build/r-base-4.6.0/doc/manual/R-admin.vrs></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
10.pfb]</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy9.pfb) [2 (Environment variable index)
[80] (/build/r-base-4.6.0/doc/manual/R-data.toc>]></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmti10.pfb (/build/r-base-4.6.0/doc/manual/R-admin.ens)
(/build/r-base-4.6.0/doc/manual/R-data.toc</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb>>
</usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti9.pfb)</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb [-1> (Concept index) [81></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmtt10.pfb]</usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb.
(/build/r-base-4.6.0/doc/manual/R-admin.cps]>) [-2>]
(/build/r-base-4.6.0/doc/manual/R-data.toc</usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb)
(/build/r-base-4.6.0/doc/manual/R-data.toc</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
12.pfb)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
>></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb</usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb) (Acknowledgements)> [82
(/build/r-base-4.6.0/doc/manual/R-data.aux>
]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pf
b)> )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb> [1</usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb] Chapter 1 [2]></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb
Writing index file R-data.cp
[3></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb]>entering extended mode
(./R-ints.texi</usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb [4> (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:.</usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmmi9.pfb pdf,]> fonts,</usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmr10.pfb [5>]</usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmr7.pfb
Underfull \hbox (badness 10000) in paragraph at lines 425--428
[]@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS 
@textrm (@texttt https://  CRAN.  R-project.  org/

Underfull \hbox (badness 10000) in paragraph at lines 436--440
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
[6></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr8.pfb] Chapter 2 [7>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr9.pfb [8>
Output written on R-intro.pdf (113 pages, 625240 bytes).
Transcript written on R-intro.log.
]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10
.pfb [9>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb
> [10
Output written on R-exts.pdf (259 pages, 1057493 bytes).
Transcript written on R-exts.log.
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb]></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb [11]></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb [12]></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb [13]> Chapter 3 [14]</usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt9.pfb> [15] glyphs, Chapter 4
[16 page headings,]
tables, conditionals, indexing,. sectioning,
Underfull \hbox (badness 10000) in paragraph at lines 1200--1212
@textrm (@texttt https://  www.  ibm.  com/  products/  informix[]@textrm )[]; 
[][]Oracle (@texttt https://  www.  oracle.  com[]@textrm )[];

Underfull \hbox (badness 10000) in paragraph at lines 1200--1212
@textrm (@texttt https://  www.  microsoft.  com/  sql-server/  []@textrm )[] o
n Win-dows) and aca-demic and
[17 toc, environments,] defuns, macros, [18
cross references, insertions,] (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, [19]
 [20] [21 formatting,] microtype, and turning on texinfo input format.) [22]
Writing index file R-ints.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi Chapter 5 [23
(/usr/share/texmf/tex/texinfo/txi-en.tex)])
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map
Output written on R-admin.pdf (87 pages, 517470 bytes).
Transcript written on R-admin.log.

Underfull \hbox (badness 10000) in paragraph at lines 1758--1764
[]@textrm Packages [][]@textbf h5 @textrm (@texttt https://  CRAN.  R-project. 
 org/  package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm ,
Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9
[31] (References) [32] (Function and variable index) [33]
(/build/r-base-4.6.0/doc/manual/R-data.vrs [34]) (Concept index) [35]
(/build/r-base-4.6.0/doc/manual/R-data.cps) [36] [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>..
Output written on R-data.pdf (41 pages, 302797 bytes).
Transcript written on R-data.log.
}] [2] (/build/r-base-4.6.0/doc/manual/R-lang.toc)
(/build/r-base-4.6.0/doc/manual/R-lang.toc.. [-1] [-2]) [-3] [-4]
(/build/r-base-4.6.0/doc/manual/R-lang.toc)
(/build/r-base-4.6.0/doc/manual/R-lang.tocThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
) Chapter 1
(/build/r-base-4.6.0/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1]entering extended mode
(./R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex [2
Loading texinfo [version 2023-09-19.19]: pdf,] fonts,
Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] glyphs, [11 page headings,
tables,] conditionals, indexing, [12] sectioning, toc, environments,. defuns, [13 macros,]
cross references, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex [14This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.

This is `epsf.tex' v2.7.4 <14 February 2011>
) localization,] [15}]] [2] (/build/r-base-4.6.0/doc/manual/R-ints.toc [16)
(/build/r-base-4.6.0/doc/manual/R-ints.toc]
[17 [-1] formatting, microtype, and turning on texinfo input format. [18])]
Writing index file R-intro.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texientering extended mode
(./R-admin.texi [19 [-2
(/usr/share/texmf/tex/texinfo/txi-en.tex)] (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:)
(/build/r-base-4.6.0/doc/manual/version.texi)] [1 pdf,){/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map [-3 [20]
(/build/r-base-4.6.0/doc/manual/R-ints.toc)
(/build/r-base-4.6.0/doc/manual/R-ints.toc fonts,] [21]) Chapter 1 [22
(/build/r-base-4.6.0/doc/manual/R-ints.aux] [23]) Chapter 4 [24]
Writing index file R-ints.cp
[1 [25]] [2 [26]] [27 [3]] Chapter 5
[28 [4] [29]] [30 [5]] [31 [6]] glyphs, [32 page headings,
tables, conditionals,] indexing, [7 sectioning, [33 toc, environments,]] defuns, macros, [34 [8
cross references, insertions,] (/build/r-base-4.6.0/doc/manual/epsf.tex]
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, Chapter 6 [35 [9]] [36 [10]] [37 [11]] [38] [12 [39 formatting,] microtype,] and turning on texinfo input format.) [13 [40]]
Writing index file R-admin.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi
[41
(/usr/share/texmf/tex/texinfo/txi-en.tex)] [14)
(/build/r-base-4.6.0/doc/manual/version.texi) [42 [1]{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map] [15 [43]] Chapter 7 [44] [16.] [17 [45]] Chapter 8 [46]
[18 [47]] Chapter 9 [48]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 1444--1444
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 

Overfull \hbox (78.17732pt too wide) in paragraph at lines 1445--1445
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 1446--1446
 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the 
Ops
 (group)generic[] 

Overfull \hbox (158.65895pt too wide) in paragraph at lines 1447--1447
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19 [49]]
[50] [20 Chapter 10 [51]] [52 [21]]. [53] [22] [54] [23 [55]] [24 [56]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
] Chapter 2 [25 [57]]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 1953--1953
 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26 [58]] [27 (References) [59]]
(Function and variable index) [60] [28 (/build/r-base-4.6.0/doc/manual/R-lang.vrs] [29] Chapter 3 [30
[61]entering extended mode
(./R-exts.texi [31] (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]:]) pdf, Chapter 4 [32] fonts, (Concept index) [62 [33] (/build/r-base-4.6.0/doc/manual/R-lang.cps] Chapter 5 [34]
Chapter 6 [35]) [36] [37] [38] [39 [63] [40]
[64]] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb
Underfull \hbox (badness 10000) in paragraph at lines 3046--3052
 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in
g glyphs (e.g., via
[41]></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb [42]></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb [43]></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb [44><]/usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb glyphs, page headings,
tables,> [45 conditionals,</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb indexing,.] sectioning,> [46 toc, environments,</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb] defuns, macros,>
cross references,</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb [47 insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
)]> localization,</u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb [48.>]</usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb Chapter 7 [49]></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb
Underfull \hbox (badness 10000) in paragraph at lines 3709--3716
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,
[50></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb]
Overfull \hbox (16.81319pt too wide) in paragraph at lines 3759--3763
 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb formatting,] microtype, and turning on texinfo input format.></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmtt10.pfb) [52]>
Writing index file R-exts.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi</usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt12.pfb
(/usr/share/texmf/tex/texinfo/txi-en.tex) [53>)
(/build/r-base-4.6.0/doc/manual/version.texi])</usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map> [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value
[] @textrm pairs (with @textsl value[] @textrm a

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex
tbf codetools

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm (@texttt https://  CRAN.  R-project.  org/  package=codetools[]@textrm
 )[] func-tions used

Underfull \hbox (badness 10000) in paragraph at lines 4097--4105
 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa
tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61
Output written on R-lang.pdf (70 pages, 390882 bytes).
Transcript written on R-lang.log.
]}] [2]
Underfull \hbox (badness 10000) in paragraph at lines 4469--4474
 @texttt blog.  r-project.  org/  2022/  04/  08/  enhancements-to-html-documen
tation/
[62 (/build/r-base-4.6.0/doc/manual/R-intro.toc])
(/build/r-base-4.6.0/doc/manual/R-intro.toc [63] [-1 [64]] [65] [-2 [66] Chapter 9 [67]] [68 [-3] Chapter 10 [69]] Chapter 11
[70]. Chapter 12 [71]) [-4 Chapter 13 [72]]
(/build/r-base-4.6.0/doc/manual/R-intro.toc) [73
(/build/r-base-4.6.0/doc/manual/R-intro.toc] (Function and variable index)
[74] [75] (/build/r-base-4.6.0/doc/manual/R-ints.vrs
) (Preface)
(/build/r-base-4.6.0/doc/manual/R-intro.aux [76)] Chapter 1 [1].
Writing index file R-intro.cp
[2 [77] [3])]
(Concept index) [78] (/build/r-base-4.6.0/doc/manual/R-ints.cps [4]) [79 [5}]]] [2] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb (/build/r-base-4.6.0/doc/manual/R-admin.toc Chapter 2 [6)
(/build/r-base-4.6.0/doc/manual/R-admin.toc>]</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb [7]> [8 [-1</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb]></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb]></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb [9></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb] [-2>] [10</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb]>)</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb [-3 [11></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb]]
(/build/r-base-4.6.0/doc/manual/R-admin.toc)>
(/build/r-base-4.6.0/doc/manual/R-admin.toc [12</usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb]></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb Chapter 3 [13]>)</usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb Chapter 1
(/build/r-base-4.6.0/doc/manual/R-admin.aux>
[14</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmti10.pfb]></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmti9.pfb [15></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmtt10.pfb]) Chapter 4 [16>]</usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmtt12.pfb
Writing index file R-admin.cp
Writing index file R-admin.en
[1> [17</usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmtt9.pfb]]> Chapter 2 [2 Chapter 5 [18]] [19] [20 [3]] [21] [4 [22]] [5] [23] [6] [24 [7]]
Output written on R-ints.pdf (84 pages, 473629 bytes).
Transcript written on R-ints.log.
 [8
[25]] [9]. [26] [10 [27]] Chapter 6 [28] [11] [29 [12]]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1049--1049
 []         @texttt c++2b gnu++2b (from 2022.2) c++23 gnu++23 (at least from 20
24.0)[] 
[13 [30]] [14 [31]] Chapter 7 [32] [15] Chapter 3 [16 [33]
] [17 [34]]
Chapter 8 [35] [18] Chapter 4 [19] [36] [20] </build/r-base-4.6.0/doc/manual/images/hist.pdf> [37] [21 </bui
ld/r-base-4.6.0/doc/manual/images/ecdf.pdf> [38]] </build/r-base-4.6.0/doc/manua
l/images/QQ.pdf}>] Chapter 5
[22 [2 [39]] (/build/r-base-4.6.0/doc/manual/R-exts.toc] </build/r-base-4.6.0/doc/manual/images/ice.pdf>. [40] Chapter 6 [23)
(/build/r-base-4.6.0/doc/manual/R-exts.toc
[41]] Chapter 9 [42] [-1
Overfull \hbox (14.94176pt too wide) in paragraph at lines 1865--1865
 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24 [43]]] [25 Chapter 10 [44]] [45 [-2
Underfull \hbox (badness 6842) in paragraph at lines 2089--2097
[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]]] [46
Overfull \hbox (37.93651pt too wide) in paragraph at lines 2162--2162
 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran -
lquadmath[] 
[27]] [47 [28 [-3]] [48]] [29] [49] [30 [50] [-4] [51 [31]]]
[52
Overfull \hbox (20.69044pt too wide) in paragraph at lines 2614--2614
 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt
t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
[32] [-5] [53 Chapter 7 [33]] Chapter 11 [54]]) [-6]
(/build/r-base-4.6.0/doc/manual/R-exts.toc [55 [34)
(/build/r-base-4.6.0/doc/manual/R-exts.toc]] [56] [35] [57 Chapter 8] [36] Chapter 9 [37] [58] [38] [39) (Acknowledgements) [59
(/build/r-base-4.6.0/doc/manual/R-exts.aux]]
Appendix A [40] [60] [41
Underfull \hbox (badness 10000) in paragraph at lines 4726--4728
 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , 
@texttt identity[]@textrm ,
[61]]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 3192--3192
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[42 [62]] [63]) [43 Chapter 1 [1] [64]] [65
Writing index file R-exts.cp
[2] [44]]
Underfull \hbox (badness 10000) in paragraph at lines 5139--5149
 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm 
(@texttt https://  CRAN.  R-project.  org/
[66]
Underfull \hbox (badness 10000) in paragraph at lines 3415--3417
[]@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https://  github.  
com/  ebiggers/  libdeflate[][]@textrm ) is used by
[45 [3. Chapter 12 [67]]]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 3513--3513
 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6
4/jre[] 
[46 [68]] [4 [47 [69]]] [5] [48 [70]] [6 [71 [49]]]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5603--5603
 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[72
Underfull \hbox (badness 10000) in paragraph at lines 513--516
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[7]] [50] [73] [8 [51] [74]] [9 [75 [52]]] [76 [10] [53]] </build/r-base-4.6.0/doc/manual/images/fig11.pdf>
[77 [11]
Underfull \hbox (badness 10000) in paragraph at lines 4154--4157
[]@textrm There is also `Re-cur-sive-LA-PACK' ([][]@texttt https://  github.  c
om/  HPAC/  ReLAPACK?
[54 </build/r-base-4.6.0/doc/manual/images/fig12.pdf]> [78]] Appendix B [55 [79 [12]]] [56 [80] [13]] [81] [57 [14]
Chapter 13 [82]] [58 [15
Underfull \hbox (badness 10000) in paragraph at lines 6298--6303
[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[83]]] Chapter 14 [84] [59 [16] [85]] [60]
Underfull \hbox (badness 10000) in paragraph at lines 6493--6498
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[86 Appendix C
Underfull \hbox (badness 10000) in paragraph at lines 1327--1328
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1328--1329
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1331--1333
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1333--1335
 @texttt ~/.R/Makevars.win64[]@textrm ,
[17 [61]] Appendix A [87]]
Underfull \hbox (badness 10000) in paragraph at lines 1341--1342
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1342--1343
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1345--1347
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1347--1349
 @texttt ~/.R/Makevars.win64[]@textrm ,
[18 [62 [88]]] [63 [89] [19] [90]] Appendix B [91]
[64 [20] [92]]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 4883--4883
 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER
TIONS[] 
[65 [21 [93]]] [66 [94
Overfull \hbox (95.42339pt too wide) in paragraph at lines 1613--1613
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 1614--1614
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 1615--1615
 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 

Underfull \hbox (badness 10000) in paragraph at lines 1647--1654
@texttt org/  package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te
xtrm (@texttt https://  CRAN.  R-project.  org/
[22]]] [95
Overfull \hbox (26.43913pt too wide) in paragraph at lines 5077--5077
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 
[67]] [23
[96]]
Overfull \hbox (122.85329pt too wide) in paragraph at lines 5164--5164
 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/pcre2-10.44-da
rwin.23-arm64.tar.xz[] 

Overfull \hbox (105.60722pt too wide) in paragraph at lines 5166--5166
 []@texttt curl -OL https://mac.r-project.org/bin/darwin23/arm64/xz-5.6.3-darwi
n.23-arm64.tar.xz[] 
l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
l.5220: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [68 [24 [97]]]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 5294--5294
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20
-arm64.tar.gz[] 

Overfull \hbox (32.18782pt too wide) in paragraph at lines 5301--5301
 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin15.
6.tar.gz[] 
[69 [98 [25]] Appendix C [99]] [100
Overfull \hbox (38.79282pt too wide) in paragraph at lines 5340--5341
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][]@smallrm .| 
[70 [26]]] (References) [101
Overfull \hbox (32.18782pt too wide) in paragraph at lines 2058--2058
 []@texttt $ pkg-config --exists 
libtiff-4 >= 4.1.0
 --print-errors # check the status[] 
[27] [71
(Function and variable index) [102]]] (/build/r-base-4.6.0/doc/manual/R-intro.vrs
. [28 [72]] [29[103]
Overfull \hbox (72.77429pt too wide) in paragraph at lines 5608--5608
[][][][][]@smalltt https://  cran.  r-project.  org/  bin/  macosx/  RMacOSX-FA
Q.  html#  Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| 

Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5645
@texttt OpenMathLib/  OpenBLAS/  releases[][]@textrm ) by sym-link-ing @texttt 
/opt/OpenBLAS/lib/libopenblas.dylib[]
[73]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2282--2282
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30]] [31
Underfull \hbox (badness 10000) in paragraph at lines 5720--5731
@texttt zulu-community/  ?  os=macos&  architecture=arm-64-bit&  package=jdk[][
] @textrm and from
[74]] [104. [32] [75]] [33]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5879--5879
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5.
dylib \[] 
[76 [34]])
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5884--5884
 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0.
dylib \[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 5902--5902
 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab
i.a[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 5925--5925
 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx-
version-min=11"[] 
[77 [35]]. [78
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2689--2689
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2691--2691
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[36]] (Function and variable index) (Concept index) [79 [105] [37]
(/build/r-base-4.6.0/doc/manual/R-admin.vrs) (Environment variable index)
[80
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2830--2830
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[38]] (/build/r-base-4.6.0/doc/manual/R-admin.ens] (/build/r-base-4.6.0/doc/manual/R-intro.cps [39)] (Concept index) [81
[106
Underfull \hbox (badness 7221) in paragraph at lines 3036--3039
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[40]
(/build/r-base-4.6.0/doc/manual/R-admin.cps]])
Overfull \hbox (60.93126pt too wide) in paragraph at lines 3100--3100
 []            @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX
20PICFLAGS)")[] 
[41 [107])] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb [82 [42>]]</usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb )
(see the transcript file for additional information)
pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been
 referenced but does not exist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb [43>]> [44</usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb]</usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb>
Overfull \hbox (43.6852pt too wide) in paragraph at lines 3355--3355
 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[45></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb]>></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb [46</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb>]</usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb> [47</usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pf
b>]></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmr10.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb [48>>]</usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb</usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmr7.pfb> [49</usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb><]/usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr8.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr9.pfb> [50</usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmr9.pfb>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10
.pfb [51>]></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmsl10.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb
>> [52</usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmsl9.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb]>></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsltt10.pfb</usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb [53>></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmsy10.pfb]</usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb> [54</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmsy7.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>]</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
10.pfb> [55></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb]></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb [56>]></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb [57>]</usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb> [58</usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>] [59]
[60] [61]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 4733--4733
 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62] [63] [64
Output written on R-admin.pdf (87 pages, 517470 bytes).
Transcript written on R-admin.log.
]
Overfull \hbox (81.29893pt too wide) in paragraph at lines 4964--4964
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
[65]
Overfull \hbox (59.61772pt too wide) in paragraph at lines 4983--4983
 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[66] [67
Output written on R-intro.pdf (113 pages, 625322 bytes).
Transcript written on R-intro.log.
] [68] [69] [70.] [71]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5444--5444
 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2
3 24 25[] 

Overfull \hbox (53.86903pt too wide) in paragraph at lines 5460--5460
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5462--5462
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 5463--5463
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

Overfull \hbox (76.86378pt too wide) in paragraph at lines 5478--5478
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[72] [73] [74.] [75] [76] [77]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5891--5891
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[78] [79]
Underfull \hbox (badness 10000) in paragraph at lines 6058--6061
 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[80]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 6145--6145
 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[81] [82]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 6290--6290
 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[83]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 6355--6355
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[84]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 6432--6432
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 6444--6444
 []@texttt warning: argument 1 value 
18446744073709551615
 exceeds maximum object[] 

Overfull \hbox (111.35591pt too wide) in paragraph at lines 6459--6459
 []    @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj)
, (double) nelem);[] 
Writing index file R-exts.ap
[85]
Underfull \hbox (badness 10000) in paragraph at lines 6512--6513
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[86] [87] [88] [89] [90] [91]
Writing index file R-exts.ae

Overfull \hbox (19.3769pt too wide) in paragraph at lines 7004--7004
 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[92] [93] Chapter 2 [94] [95] [96] [97] [98] [99] [100] [101] [102]. [103]
[104] [105] [106]
Underfull \hbox (badness 7451) in paragraph at lines 8147--8161
@texttt \code{"\link[=abc-class]{abc}"}[] @textrm and @texttt \code{\link[=xyz-
methods]{xyz}}[] @textrm could
[107] [108]
Underfull \hbox (badness 10000) in paragraph at lines 8269--8276
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[109] [110]
Underfull \hbox (badness 10000) in paragraph at lines 8485--8490
 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[111]. [112] [113] [114] [115] Chapter 3 [116] [117] [118] [119] [120] [121]
[122]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 9339--9339
 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[123] Chapter 4 [124] [125] [126]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9608--9608
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[127]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 9649--9649
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[128]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 9755--9755
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 9785--9794
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[129] [130] [131] [132]
Underfull \hbox (badness 10000) in paragraph at lines 10046--10051
@smalltt developer.  apple.  com/  documentation/  xcode/  diagnosing-memory-th
read-and-crash-issues-early[][]@smallrm .

Underfull \hbox (badness 10000) in paragraph at lines 10044--10057
@texttt controlling-code-generation[][]@textrm , [][]@texttt https://  clang.  
llvm.  org/  docs/  AddressSanitizer.

Overfull \hbox (48.90796pt too wide) in paragraph at lines 10061--10062
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[133] [134]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 10212--10212
 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 

Overfull \hbox (32.81921pt too wide) in paragraph at lines 10238--10241
[][]@smalltt https://  developer.  apple.  com/  documentation/  xcode/  diagno
sing-memory-thread-and-crash-issues-early[][]@smallrm .| 

Overfull \hbox (33.15736pt too wide) in paragraph at lines 10251--10254
[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[135] [136]
Underfull \hbox (badness 10000) in paragraph at lines 10350--10354
[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][]

Overfull \hbox (112.66945pt too wide) in paragraph at lines 10366--10366
 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 10367--10367
 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

Overfull \hbox (181.6537pt too wide) in paragraph at lines 10370--10370
 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

Overfull \hbox (37.93651pt too wide) in paragraph at lines 10378--10378
 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 

Overfull \hbox (2.03816pt too wide) in paragraph at lines 10417--10421
[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.
[137]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 10440--10440
 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10485--10485
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10488--10488
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[138] [139]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 10567--10567
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[140] [141] [142]
Underfull \hbox (badness 10000) in paragraph at lines 10802--10804
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[143]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 10858--10858
 []@texttt boot.f:61: warning: type of 
ddot
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (147.16158pt too wide) in paragraph at lines 10877--10877
 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (141.41289pt too wide) in paragraph at lines 10888--10888
 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10908--10908
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10917--10917
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (43.6852pt too wide) in paragraph at lines 10918--10918
 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
[144] Chapter 5 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155].
Overfull \hbox (30.87428pt too wide) in paragraph at lines 11720--11720
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 11784--11784
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[156] [157]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 11950--11950
 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[158] [159]. [160] [161] [162] [163]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 12390--12390
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[164] [165] [166] [167] [168] [169] [170] [171] [172].. [173] [174]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 13320--13320
 []        @texttt Rf_error("value is not a numeric vector with at least one el
ement");[] 
[175]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 13395--13395
 []    @texttt if(ign == NA_LOGICAL) Rf_error("
ignore_quotes
 must be TRUE or FALSE");[] 
[176]
Underfull \hbox (badness 10000) in paragraph at lines 13456--13461
[]@textrm Some use-ful pre-allocated val-ues are avail-able as @texttt R_BlankS
calarString[]@textrm ,
[177]
Underfull \hbox (badness 7576) in paragraph at lines 13635--13643
[]@textrm Some con-ve-nience func-tions for work-ing with pairlist ob-jects in-
clude @texttt Rf_
[178] [179] [180] [181]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 13998--13998
 []            @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T
AG(args)));[] 
[182] [183]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 14170--14170
 []    @texttt if(!Rf_isEnvironment(rho)) Rf_error("
rho
 should be an environment");[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 14198--14198
 []    @texttt if(!Rf_isEnvironment(rho)) Rf_error("
rho
 should be an environment");[] 
[184] [185]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14311--14311
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[186] [187]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 14435--14435
 []    @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t
heta)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14442--14442
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (60.93126pt too wide) in paragraph at lines 14443--14443
 []        @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)),
 rho, TRUE));[] 
[188]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 14497--14497
 []    @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t
heta)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14510--14510
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (60.93126pt too wide) in paragraph at lines 14511--14511
 []        @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)),
 rho, TRUE));[] 
[189]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14611--14611
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[190] [191] [192]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14793--14793
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[193]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 14885--14885
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"),
 R_NilValue);[] 
[194]

Overfull \hbox (72.42863pt too wide) in paragraph at lines 15022--15022
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[195] [196] Chapter 6 [197] [198] [199] [200]
Writing index file R-exts.for
[201] [202] [203] [204] [205] [206]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 16042--16042
 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

Underfull \hbox (badness 10000) in paragraph at lines 16060--16065
@texttt com/  content/  www/  us/  en/  docs/  fortran-compiler/  developer-gui
de-reference/
[207] [208] [209] [210] [211.] [212] [213] [214] [215] [216]
Underfull \hbox (badness 10000) in paragraph at lines 16873--16877
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[217] [218] [219] [220]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 17159--17159
 []                     @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd
ata);[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 17166--17166
 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 17195--17195
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
Underfull \hbox (badness 10000) in paragraph at lines 18004--18014
@texttt R_BindingTypeValue[]@textrm , @texttt R_BindingTypeMissing[]@textrm , @
texttt R_BindingTypeDelayed[]@textrm , @texttt R_
[232] [233] [234] Chapter 7 [235] [236.] Chapter 8 [237] [238]
Writing index file R-exts.em
[239]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 18615--18615
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[240]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 18658--18658
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 18673--18673
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[241] [242] [243] [244] [245] [246] [247] [248] [249].
(Function and variable index) [250] (/build/r-base-4.6.0/doc/manual/R-exts.vrs
[251] [252].. [253] [254] [255] [256] [257]) (API index) [258]
(/build/r-base-4.6.0/doc/manual/R-exts.aps [259] [260] [261] [262])
(Fortran API index) [263] (/build/r-base-4.6.0/doc/manual/R-exts.fors)
(Experimental API index) [264] (/build/r-base-4.6.0/doc/manual/R-exts.aes
[265].) (Embedding API index) [266] (/build/r-base-4.6.0/doc/manual/R-exts.ems)
(Concept index) [267] (/build/r-base-4.6.0/doc/manual/R-exts.cps [268])
[269] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>.
Output written on R-exts.pdf (277 pages, 1170326 bytes).
Transcript written on R-exts.log.
...
..
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(./R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2023-09-19.19]: pdf, fonts,. glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (/build/r-base-4.6.0/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, microtype, and turning on texinfo input format.)
Writing index file R-exts.vr
(/build/r-base-4.6.0/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
(/build/r-base-4.6.0/doc/manual/version.texi) [1{/var/lib/texmf/fonts/map/pdfte
x/updmap/pdftex.map..}] [2] (/build/r-base-4.6.0/doc/manual/R-exts.toc)
(/build/r-base-4.6.0/doc/manual/R-exts.toc [-1] [-2] [-3] [-4] [-5]) [-6]
(/build/r-base-4.6.0/doc/manual/R-exts.toc)
(/build/r-base-4.6.0/doc/manual/R-exts.toc) (Acknowledgements)
(/build/r-base-4.6.0/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 513--516
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[7] [8] [9] [10]. [11] [12] [13] [14] [15] [16]
Underfull \hbox (badness 10000) in paragraph at lines 1327--1328
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1328--1329
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1331--1333
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1333--1335
 @texttt ~/.R/Makevars.win64[]@textrm ,
[17]
Underfull \hbox (badness 10000) in paragraph at lines 1341--1342
@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1342--1343
 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

Underfull \hbox (badness 10000) in paragraph at lines 1345--1347
@texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars-

Underfull \hbox (badness 10000) in paragraph at lines 1347--1349
 @texttt ~/.R/Makevars.win64[]@textrm ,
[18] [19] [20] [21]
Overfull \hbox (95.42339pt too wide) in paragraph at lines 1613--1613
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

Overfull \hbox (72.42863pt too wide) in paragraph at lines 1614--1614
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 1615--1615
 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 

Underfull \hbox (badness 10000) in paragraph at lines 1647--1654
@texttt org/  package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te
xtrm (@texttt https://  CRAN.  R-project.  org/
[22] [23] [24] [25] [26]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 2058--2058
 []@texttt $ pkg-config --exists 
libtiff-4 >= 4.1.0
 --print-errors # check the status[] 
[27] [28] [29]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 2282--2282
 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30]. [31] [32] [33.] [34] [35]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2689--2689
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2691--2691
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[36] [37]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2830--2830
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[38] [39]
Underfull \hbox (badness 7221) in paragraph at lines 3036--3039
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][] @smallrm or
[40]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 3100--3100
 []            @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX
20PICFLAGS)")[] 
[41] [42] [43] [44]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 3355--3355
 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59]
[60] [61]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 4733--4733
 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62] [63] [64]
Overfull \hbox (81.29893pt too wide) in paragraph at lines 4964--4964
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
[65]
Overfull \hbox (59.61772pt too wide) in paragraph at lines 4983--4983
 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf
ig CXXPICFLAGS^^R[] 
[66] [67] [68] [69] [70] [71]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 5444--5444
 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2
3 24 25[] 

Overfull \hbox (53.86903pt too wide) in paragraph at lines 5460--5460
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

Overfull \hbox (48.12035pt too wide) in paragraph at lines 5462--5462
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

Overfull \hbox (65.36641pt too wide) in paragraph at lines 5463--5463
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

Overfull \hbox (76.86378pt too wide) in paragraph at lines 5478--5478
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[72] [73] [74] [75] [76] [77]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 5891--5891
 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[78] [79]
Underfull \hbox (badness 10000) in paragraph at lines 6058--6061
 @texttt gcc/  C-Extensions.  html[][] @textrm and [][]@texttt https://  gcc.  
gnu.  org/  onlinedocs/  gcc/
[80]
Overfull \hbox (19.3769pt too wide) in paragraph at lines 6145--6145
 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[81] [82]
Overfull \hbox (53.86903pt too wide) in paragraph at lines 6290--6290
 []@texttt 
register
 storage class specifier is deprecated and incompatible with C++17[] 
[83]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 6355--6355
 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[84]
Overfull \hbox (48.12035pt too wide) in paragraph at lines 6432--6432
 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:
kdenestmlcvb
 :: kdenestmlcvb[] 

Overfull \hbox (25.1256pt too wide) in paragraph at lines 6444--6444
 []@texttt warning: argument 1 value 
18446744073709551615
 exceeds maximum object[] 

Overfull \hbox (111.35591pt too wide) in paragraph at lines 6459--6459
 []    @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj)
, (double) nelem);[] 
Writing index file R-exts.ap
[85]
Underfull \hbox (badness 10000) in paragraph at lines 6512--6513
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[86] [87] [88] [89] [90] [91]
Writing index file R-exts.ae

Overfull \hbox (19.3769pt too wide) in paragraph at lines 7004--7004
 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[92] [93]. Chapter 2 [94] [95] [96] [97] [98] [99] [100] [101.] [102] [103]
[104] [105] [106]
Underfull \hbox (badness 7451) in paragraph at lines 8147--8161
@texttt \code{"\link[=abc-class]{abc}"}[] @textrm and @texttt \code{\link[=xyz-
methods]{xyz}}[] @textrm could
[107] [108]
Underfull \hbox (badness 10000) in paragraph at lines 8269--8276
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[109] [110]
Underfull \hbox (badness 10000) in paragraph at lines 8485--8490
 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[111] [112] [113] [114] [115] Chapter 3 [116] [117] [118] [119] [120] [121]
[122]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 9339--9339
 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[123] Chapter 4 [124] [125] [126]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 9608--9608
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[127]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 9649--9649
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[128]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 9755--9755
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 9785--9794
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[129] [130] [131] [132]
Underfull \hbox (badness 10000) in paragraph at lines 10046--10051
@smalltt developer.  apple.  com/  documentation/  xcode/  diagnosing-memory-th
read-and-crash-issues-early[][]@smallrm .

Underfull \hbox (badness 10000) in paragraph at lines 10044--10057
@texttt controlling-code-generation[][]@textrm , [][]@texttt https://  clang.  
llvm.  org/  docs/  AddressSanitizer.

Overfull \hbox (48.90796pt too wide) in paragraph at lines 10061--10062
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[133] [134]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 10212--10212
 []@texttt setenv ASAN_OPTIONS 
alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0
[] 

Overfull \hbox (32.81921pt too wide) in paragraph at lines 10238--10241
[][]@smalltt https://  developer.  apple.  com/  documentation/  xcode/  diagno
sing-memory-thread-and-crash-issues-early[][]@smallrm .| 

Overfull \hbox (33.15736pt too wide) in paragraph at lines 10251--10254
[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[135] [136]
Underfull \hbox (badness 10000) in paragraph at lines 10350--10354
[][]@texttt https://  blog.  llvm.  org/  2011/  05/  what-every-c-programmer-s
hould-know.  html[][]

Overfull \hbox (112.66945pt too wide) in paragraph at lines 10366--10366
 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

Overfull \hbox (170.15633pt too wide) in paragraph at lines 10367--10367
 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

Overfull \hbox (181.6537pt too wide) in paragraph at lines 10370--10370
 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

Overfull \hbox (37.93651pt too wide) in paragraph at lines 10378--10378
 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 

Overfull \hbox (2.03816pt too wide) in paragraph at lines 10417--10421
[]@textrm See [][]@texttt https://  gcc.  gnu.  org/  onlinedocs/  gcc-10.  1. 
 0/  gcc/  Static-Analyzer-Options.
[137]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 10440--10440
 []@texttt Fortran runtime error: Index 
1
 of dimension 1 of array 
x
 above upper bound of 0[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10485--10485
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10488--10488
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[138] [139]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 10567--10567
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[140] [141] [142]
Underfull \hbox (badness 10000) in paragraph at lines 10802--10804
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][]@smallrm :
[143]
Overfull \hbox (124.16682pt too wide) in paragraph at lines 10858--10858
 []@texttt boot.f:61: warning: type of 
ddot
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (147.16158pt too wide) in paragraph at lines 10877--10877
 []@texttt rkpk2.f:77:5: warning: type of 
dstup
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (141.41289pt too wide) in paragraph at lines 10888--10888
 []@texttt reg.f:78:33: warning: type of 
dqrdc
 does not match original declaration [-Wlto-type-mismatch][] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10908--10908
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 10917--10917
 []                                                                        @tex
ttt 1[] 

Overfull \hbox (43.6852pt too wide) in paragraph at lines 10918--10918
 []@texttt Warning: Type mismatch in argument 
jpvt
 at (1); passed REAL(8) to INTEGER(4)[] 
[144] Chapter 5 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154]
[155]
Overfull \hbox (30.87428pt too wide) in paragraph at lines 11720--11720
 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

Overfull \hbox (51.66371pt too wide) in paragraph at lines 11784--11784
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[156] [157]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 11950--11950
 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[158] [159] [160] [161] [162] [163]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 12390--12390
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[164] [165] [166]. [167] [168] [169] [170] [171] [172]. [173] [174]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 13320--13320
 []        @texttt Rf_error("value is not a numeric vector with at least one el
ement");[] 
[175.]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 13395--13395
 []    @texttt if(ign == NA_LOGICAL) Rf_error("
ignore_quotes
 must be TRUE or FALSE");[] 
[176]
Underfull \hbox (badness 10000) in paragraph at lines 13456--13461
[]@textrm Some use-ful pre-allocated val-ues are avail-able as @texttt R_BlankS
calarString[]@textrm ,
[177]
Underfull \hbox (badness 7576) in paragraph at lines 13635--13643
[]@textrm Some con-ve-nience func-tions for work-ing with pairlist ob-jects in-
clude @texttt Rf_
[178] [179] [180] [181]
Overfull \hbox (49.43388pt too wide) in paragraph at lines 13998--13998
 []            @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T
AG(args)));[] 
[182] [183]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 14170--14170
 []    @texttt if(!Rf_isEnvironment(rho)) Rf_error("
rho
 should be an environment");[] 

Overfull \hbox (20.69044pt too wide) in paragraph at lines 14198--14198
 []    @texttt if(!Rf_isEnvironment(rho)) Rf_error("
rho
 should be an environment");[] 
[184] [185]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14311--14311
 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[186] [187]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 14435--14435
 []    @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t
heta)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14442--14442
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (60.93126pt too wide) in paragraph at lines 14443--14443
 []        @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)),
 rho, TRUE));[] 
[188]
Overfull \hbox (32.18782pt too wide) in paragraph at lines 14497--14497
 []    @texttt gradient = PROTECT(Rf_allocMatrix(REALSXP, LENGTH(ans), LENGTH(t
heta)));[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 14510--14510
 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

Overfull \hbox (60.93126pt too wide) in paragraph at lines 14511--14511
 []        @texttt par = PROTECT(R_getVar(Rf_installChar(STRING_ELT(theta, i)),
 rho, TRUE));[] 
[189]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 14611--14611
 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[190] [191] [192]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 14793--14793
 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[193]
Overfull \hbox (60.93126pt too wide) in paragraph at lines 14885--14885
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"),
 R_NilValue);[] 
[194]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 15022--15022
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[195] [196] Chapter 6 [197] [198] [199] [200]
Writing index file R-exts.for
[201] [202] [203] [204] [205] [206]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 16042--16042
 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 

Underfull \hbox (badness 10000) in paragraph at lines 16060--16065
@texttt com/  content/  www/  us/  en/  docs/  fortran-compiler/  developer-gui
de-reference/
[207] [208] [209] [210] [211]. [212] [213] [214] [215] [216]
Underfull \hbox (badness 10000) in paragraph at lines 16873--16877
 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[217] [218] [219] [220]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 17159--17159
 []                     @texttt SEXP (*hndlr)(SEXP cond, void *hdata), void *hd
ata);[] 

Overfull \hbox (66.67995pt too wide) in paragraph at lines 17166--17166
 []                               @texttt SEXP (*hndlr)(SEXP cond, void *hdata)
, void *hdata)[] 

Overfull \hbox (26.43913pt too wide) in paragraph at lines 17195--17195
 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231]
Underfull \hbox (badness 10000) in paragraph at lines 18004--18014
@texttt R_BindingTypeValue[]@textrm , @texttt R_BindingTypeMissing[]@textrm , @
texttt R_BindingTypeDelayed[]@textrm , @texttt R_
[232] [233] [234] Chapter 7 [235] [236] Chapter 8 [237] [238].
Writing index file R-exts.em
[239]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 18615--18615
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s
tatic libR[] 
[240]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 18658--18658
 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 18673--18673
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[241] [242] [243] [244] [245] [246] [247] [248] [249]
(Function and variable index) [250] (/build/r-base-4.6.0/doc/manual/R-exts.vrs
[251] [252] [253.] [254] [255] [256] [257]) (API index) [258]
(/build/r-base-4.6.0/doc/manual/R-exts.aps [259] [260] [261] [262])
(Fortran API index) [263] (/build/r-base-4.6.0/doc/manual/R-exts.fors)
(Experimental API index) [264]. (/build/r-base-4.6.0/doc/manual/R-exts.aes
[265]) (Embedding API index) [266] (/build/r-base-4.6.0/doc/manual/R-exts.ems)
(Concept index) [267] (/build/r-base-4.6.0/doc/manual/R-exts.cps [268])
[269] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb

></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>.
Output written on R-exts.pdf (277 pages, 1170388 bytes).
Transcript written on R-exts.log.
.........................................
.............
PDF/LaTeX documentation: reference index ...
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file refman.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}]
No file refman.toc.
(./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 150--158
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 338--341
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 573--579
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657
 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when  
\TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 
`[] 

[43]
[44]
[45]
[46]
[47]
Underfull \hbox (badness 1721) in paragraph at lines 2977--2981
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[48]
[49]
[50]
[51]
[52]
[53]
[54]
Underfull \hbox (badness 2538) in paragraph at lines 3469--3472
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[55]
[56]
[57]
[58]
[59]
Underfull \vbox (badness 3803) has occurred while \output is active
[60]
[61]
[62]
[63]
[64]
[65]
[66]
[67]
Underfull \hbox (badness 10000) in paragraph at lines 4265--4267
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
[88]
Underfull \hbox (badness 2521) in paragraph at lines 5623--5625
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
[108]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
Underfull \hbox (badness 2253) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn
ection[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 2846) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke
t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class

[118]
[119]
[120]
[121]
Underfull \hbox (badness 2261) in paragraph at lines 7873--7878
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[122]
[123]
[124]
Underfull \vbox (badness 10000) has occurred while \output is active
[125]
[126]
[127]
[128]
[129]
[130]
[131]
[132]
[133]
Underfull \hbox (badness 2096) in paragraph at lines 8618--8622
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[134]
[135]
Underfull \hbox (badness 2351) in paragraph at lines 8734--8737
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[136]
[137]
[138]
[139]
[140]
Underfull \hbox (badness 4479) in paragraph at lines 9051--9062
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[141]
[142]
[143]
[144]
[145]
[146]
Underfull \hbox (badness 2698) in paragraph at lines 9465--9471
[]\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 
mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.
finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n
/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 9492--9504
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9492--9504
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[147]
[148]
[149]
Underfull \hbox (badness 3657) in paragraph at lines 9692--9694
[][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac
-tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , 
[]\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 ,

[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
[158]
[159]
Underfull \hbox (badness 1178) in paragraph at lines 10351--10355
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
[194]
[195]
[196]
Underfull \hbox (badness 2744) in paragraph at lines 12723--12725
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[197]
[198]
[199]
[200]
[201]
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
[227]
[228]
Underfull \hbox (badness 2253) in paragraph at lines 14943--14945
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

[229]
Underfull \hbox (badness 1490) in paragraph at lines 14978--14981
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[230]
Underfull \hbox (badness 1565) in paragraph at lines 15064--15068
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[231]
Underfull \hbox (badness 4927) in paragraph at lines 15115--15117
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[232]
[233]
Underfull \hbox (badness 1466) in paragraph at lines 15266--15269
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[234]
[235]
Underfull \hbox (badness 10000) in paragraph at lines 15397--15401
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15408--15411
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[236]
[237]
[238]
[239]
[240]
Underfull \hbox (badness 3965) in paragraph at lines 15712--15716
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[241]
[242]
[243]
[244]
[245]
[246]
[247]
[248]
Underfull \hbox (badness 5260) in paragraph at lines 16225--16225
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[249]
[250]
[251]
[252]
[253]
Underfull \hbox (badness 4429) in paragraph at lines 16517--16520
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[254]
[255]
Underfull \hbox (badness 10000) in paragraph at lines 16624--16626
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[256]
Underfull \hbox (badness 2035) in paragraph at lines 16697--16701
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[257]
Underfull \vbox (badness 10000) has occurred while \output is active
[258]
[259]
[260]
[261]
[262]
[263]
[264]
[265]
[266]
Underfull \hbox (badness 2452) in paragraph at lines 17323--17327
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17323--17327
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[267]
[268]
[269]
Underfull \hbox (badness 1092) in paragraph at lines 17516--17521
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[270]
[271]
[272]
Underfull \hbox (badness 6741) in paragraph at lines 17769--17773
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[273]
[274]
[275]
[276]
[277]
[278]
[279]
[280]
[281]
[282]
[283]
[284]
Underfull \vbox (badness 10000) has occurred while \output is active
[285]
[286]
[287]
[288]
[289]
[290]
[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 1769) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[296]
[297]
[298]
[299]
[300]
Underfull \hbox (badness 10000) in paragraph at lines 19592--19594
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19598--19607
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[301]
[302]
[303]
[304]
[305]
[306]
[307]
[308]
[309]
Underfull \hbox (badness 1442) in paragraph at lines 20210--20212
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[310]
[311]
Underfull \hbox (badness 2452) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[312]
[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 1248) in paragraph at lines 20704--20707
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[318]
[319]
[320]
[321]
[322]
Underfull \hbox (badness 4739) in paragraph at lines 20975--20977
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[323]
[324]
[325]
[326]
[327]
Underfull \vbox (badness 3803) has occurred while \output is active
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
[337]
[338]
[339]
[340]
[341]
Underfull \hbox (badness 2469) in paragraph at lines 22168--22173
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[342]
[343]
Underfull \hbox (badness 1675) in paragraph at lines 22255--22264
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 22265--22278
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 22313--22316
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 22313--22316
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[344]
[345]
Underfull \hbox (badness 1014) in paragraph at lines 22448--22453
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
[354]
[355]
[356]
[357]
[358]
Underfull \hbox (badness 1264) in paragraph at lines 23309--23317
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

[359]
Underfull \hbox (badness 4441) in paragraph at lines 23344--23347
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[360]
[361]
[362]
[363]
[364]
[365]
[366]
[367]
[368]
[369]
[370]
[371]
Underfull \hbox (badness 5231) in paragraph at lines 24169--24171
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
[384]
[385]
[386]
[387]
[388]
[389]
[390]
Underfull \hbox (badness 6380) in paragraph at lines 25335--25341
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 25335--25341
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[391]
[392]
[393]
[394]
[395]
[396]
[397]
[398]
Underfull \hbox (badness 2790) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[399]
[400]
[401]
[402]
[403]
Underfull \hbox (badness 1194) in paragraph at lines 26180--26183
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[404]
[405]
[406]
Underfull \hbox (badness 2368) in paragraph at lines 26390--26396
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[407]
[408]
[409]
[410]
[411]
[412]
Underfull \hbox (badness 10000) in paragraph at lines 26783--26786
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[413]
[414]
[415]
[416]
[417]
[418]
[419]
[420]
[421]
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27435--27437
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[423]
[424]
[425]
[426]
[427]
[428]
[429]
Underfull \hbox (badness 2443) in paragraph at lines 27928--27936
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[430]
[431]
[432]
[433]
[434]
[435]
[436]
Underfull \hbox (badness 1881) in paragraph at lines 28360--28363
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 28385--28387
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[437]
[438]
Underfull \hbox (badness 2142) in paragraph at lines 28532--28536
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

[439]
Underfull \hbox (badness 1968) in paragraph at lines 28589--28594
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[440]
[441]
[442]
Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28910--28913
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

[443]
Underfull \hbox (badness 2689) in paragraph at lines 28936--28938
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28984--28989
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 29002--29005
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[444]
[445]
[446]
[447]
[448]
[449]
Underfull \hbox (badness 10000) in paragraph at lines 29420--29424
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[450]
[451]
[452]
Underfull \hbox (badness 10000) in paragraph at lines 29569--29572
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[453]
Underfull \hbox (badness 7925) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29651--29655
[]\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is 
al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]
\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29656--29665
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s,

[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
[463]
[464]
[465]
[466]
[467]
[468]
[469]
Underfull \hbox (badness 2726) in paragraph at lines 30692--30695
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
[482]
[483]
[484]
[485]
[486]
[487]
[488]
Underfull \vbox (badness 3803) has occurred while \output is active
[489]
[490]
[491]
[492]
[493]
[494]
[495]
[496]
[497]
Underfull \hbox (badness 1533) in paragraph at lines 32526--32529
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[498]
[499]
[500]
Underfull \hbox (badness 1163) in paragraph at lines 32698--32709
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[501]
[502]
[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
[520]
[521]
[522]
[523]
[524]
[525]
[526]
Underfull \hbox (badness 10000) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 34403--34405
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 34406--34410
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[527]
[528]
Underfull \vbox (badness 10000) has occurred while \output is active
[529]
[530]
[531]
[532]
[533]
[534]
[535]
[536]
Underfull \hbox (badness 1655) in paragraph at lines 35014--35016
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
[549]
[550]
[551]
[552]
[553]
[554]
[555]
Underfull \hbox (badness 2261) in paragraph at lines 36229--36234
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
[565]
[566]
[567]
[568]
[569]
[570]
[571]
[572]
Underfull \hbox (badness 3668) in paragraph at lines 37332--37336
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[573]
Underfull \hbox (badness 10000) in paragraph at lines 37423--37434
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
[591]
[592]
[593]
Underfull \vbox (badness 3803) has occurred while \output is active
[594]
[595]
[596]
[597]
[598]
[599]
Underfull \hbox (badness 10000) in paragraph at lines 39086--39088
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[600]
[601]
[602]
[603]
[604]
[605]
Underfull \hbox (badness 2913) in paragraph at lines 39504--39508
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[606]
[607]
[608]
[609]
Underfull \hbox (badness 1072) in paragraph at lines 39755--39759
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 39760--39764
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

[610]
Underfull \hbox (badness 3009) in paragraph at lines 39815--39822
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[611]
[612]
[613]
Underfull \hbox (badness 2644) in paragraph at lines 40050--40054
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
[630]
[631]
[632]
[633]
[634]
[635]
[636]
[637]
[638]
Underfull \hbox (badness 4144) in paragraph at lines 41632--41640
[]\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][
][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary
.data.frame[]\T1/ptm/m/n/10 ). In

Underfull \hbox (badness 1158) in paragraph at lines 41642--41644
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[639]
[640]
[641]
[642]
[643]
[644]
[645] [646]
[647]
[648]
[649]
Underfull \hbox (badness 1137) in paragraph at lines 42291--42297
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 42309--42314
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[650]
[651]
Underfull \hbox (badness 1616) in paragraph at lines 42432--42437
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[652]
[653]
[654]
[655]
Underfull \vbox (badness 3803) has occurred while \output is active
[656]
[657]
[658]
[659]
[660]
Underfull \hbox (badness 1472) in paragraph at lines 42980--42983
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[661]
[662]
[663]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 43192.


[664]
[665]
[666]
[667]
[668]
[669]
[670]
[671]
[672]
[673]
[674]
[675]
Underfull \hbox (badness 10000) in paragraph at lines 43937--43941
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
[684]
[685]
[686]
[687]
[688]
[689]
[690]
[691]
[692]
[693]
Underfull \hbox (badness 10000) in paragraph at lines 45135--45138
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[694]
[695]
[696]
[697]
[698]
[699]
Underfull \vbox (badness 10000) has occurred while \output is active
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
Underfull \hbox (badness 1990) in paragraph at lines 46056--46064
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 46056--46064
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
[720]
[721]
[722]
[723]
[724]
[725]
[726]
[727]
[728]
[729]
Underfull \hbox (badness 1014) in paragraph at lines 47504--47507
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[730]
[731]
Underfull \hbox (badness 2401) in paragraph at lines 47638--47642
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[732]
[733]
Underfull \hbox (badness 3492) in paragraph at lines 47765--47767
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[734]
[735]
Underfull \hbox (badness 2111) in paragraph at lines 47851--47856
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[736]
[737]
[738]
[739]
[740]
[741]
[742]
[743]
[744]
[745]
Underfull \hbox (badness 5417) in paragraph at lines 48517--48521
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[746]
Underfull \hbox (badness 10000) in paragraph at lines 48578--48582
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[747]) (./compiler-pkg.tex
[748]
Chapter 2.

[749]
[750]
[751]
[752]) (./datasets-pkg.tex
Chapter 3.

[753]
Underfull \hbox (badness 1199) in paragraph at lines 55--59
[]\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e
ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN

[754]
[755]
[756]
[757] [758]
[759]
[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]
[774]
[775]
[776]
[777]
[778]
[779]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704
 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co
l = adjustcolor("thistle", 1/3))[] 

[780]
[781]
[782]
[783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[817]
[818]
[819]
[820]
Underfull \hbox (badness 10000) in paragraph at lines 4210--4216
[]\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been
 avail-able at

[821]
[822]
[823]
[824]
[825]
[826]
[827]
[828]
[829]
[830]
[831]
[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]) (./grDevices-pkg.tex
Chapter 4.

[841]
[842]
[843]
[844]
[845]
Underfull \hbox (badness 2221) in paragraph at lines 284--288
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 299--304
[]\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1
0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1
0 in

[846]
[847]
[848]
[849]
[850]
[851]
[852]
[853]
[854]
[855]
Underfull \hbox (badness 1424) in paragraph at lines 925--927
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[856]
Underfull \vbox (badness 3803) has occurred while \output is active
[857]
[858]
[859]
[860]
Underfull \hbox (badness 5175) in paragraph at lines 1253--1255
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[861]
[862]
Underfull \hbox (badness 2512) in paragraph at lines 1372--1374
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[863]
[864]
[865]
[866]
[867]
Underfull \hbox (badness 1490) in paragraph at lines 1672--1677
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1685--1689
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[868]
[869]
[870]
[871]
[872]
[873]
[874]
Underfull \hbox (badness 1325) in paragraph at lines 2100--2110
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[875]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2214
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[876]
[877]
[878]
Underfull \hbox (badness 6758) in paragraph at lines 2400--2403
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[879]
[880]
[881]
[882]
[883]
[884]
Underfull \hbox (badness 1694) in paragraph at lines 2759--2762
[]\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T
1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to

[885]
[886]
[887]
[888]
[889]
[890]
Underfull \hbox (badness 10000) in paragraph at lines 3171--3172


[891]
[892]
[893]
[894]
[895]
[896]
[897]
[898]
[899]
[900]
[901]
[902]
Underfull \vbox (badness 3803) has occurred while \output is active
[903]
[904]
[905]
Underfull \hbox (badness 1484) in paragraph at lines 4137--4140
\T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki
pedia . org / w / index . php ? title = HCL _ color _ space &

[906]
Underfull \vbox (badness 10000) has occurred while \output is active
[907]
[908]
[909]
[910]
Underfull \hbox (badness 1418) in paragraph at lines 4463--4470
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[911]
[912]
[913]
[914]
Underfull \hbox (badness 1152) in paragraph at lines 4750--4757
[]\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col
ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 ,

[915]
[916]
[917]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4933 \aliasA{symbol}{plotmath}{symbol}
                                         [918] [919]
[920]
[921]
Underfull \vbox (badness 3803) has occurred while \output is active
[922]
[923]
Underfull \hbox (badness 1584) in paragraph at lines 5325--5327
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5329--5336
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[924]
[925]
[926]
[927]
Underfull \hbox (badness 1377) in paragraph at lines 5631--5636
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[928]
[929]
Underfull \hbox (badness 1377) in paragraph at lines 5735--5740
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[930]
Underfull \hbox (badness 7344) in paragraph at lines 5804--5806
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[931]
[932]
Underfull \hbox (badness 2035) in paragraph at lines 5944--5953
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[933]
Underfull \hbox (badness 10000) in paragraph at lines 6010--6015
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[934]
[935]
[936]
Underfull \hbox (badness 1546) in paragraph at lines 6151--6159
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[937]
[938]
[939]
[940]
[941]
[942]
Underfull \hbox (badness 3343) in paragraph at lines 6595--6598
[]\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla
y-ing the Graph-ics En-

Underfull \hbox (badness 7740) in paragraph at lines 6595--6598
\T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech 
. wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 /

[943]
[944]
Underfull \hbox (badness 10000) in paragraph at lines 6699--6702
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[945]
[946]
[947]
[948]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[949]
[950]
[951]
[952]
[953]
[954]
[955]
[956]
[957]
[958]
Underfull \hbox (badness 1189) in paragraph at lines 7565--7567
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[959]
Underfull \hbox (badness 10000) in paragraph at lines 7670--7672
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
[968]) (./graphics-pkg.tex
Chapter 5.

[969]
[970]
[971]
[972]
[973]
[974]
[975]
[976]
[977]
[978]
[979]
Underfull \vbox (badness 3803) has occurred while \output is active
[980]
[981]
[982]
[983]
[984]
[985]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[986]
Underfull \vbox (badness 10000) has occurred while \output is active
[987]
[988]
[989]
[990]
[991]
[992]
Underfull \hbox (badness 4634) in paragraph at lines 1459--1462
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[993]
[994]
[995]
[996]
[997]
[998]
[999]
[1000]
[1001]
Underfull \vbox (badness 3803) has occurred while \output is active
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
Underfull \hbox (badness 1728) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[1009]
[1010]
Underfull \hbox (badness 1009) in paragraph at lines 2555--2562
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
[1021]
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \vbox (badness 10000) has occurred while \output is active
[1035]
[1036]
[1037]
[1038]
[1039]
[1040]
Underfull \vbox (badness 3803) has occurred while \output is active
[1041]
[1042]
[1043]
[1044]
[1045]
[1046]
[1047]
Underfull \hbox (badness 3229) in paragraph at lines 4852--4857
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1048]
[1049]
[1050]
[1051]
[1052]
Underfull \hbox (badness 1107) in paragraph at lines 5352--5358
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1053]
[1054]
Underfull \hbox (badness 10000) in paragraph at lines 5481--5484


[1055 </build/r-base-4.6.0/library/graphics/help/figures/mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5542--5544


Underfull \vbox (badness 10000) has occurred while \output is active
[1056]
[1057 </build/r-base-4.6.0/library/graphics/help/figures/oma.pdf>]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6231 \aliasA{plot}{plot.default}{plot}
                                        
[1067]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1
0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are

Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its
 are com-puted from

[1068]
[1069]
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168
[][] 

[1082 </build/r-base-4.6.0/library/graphics/help/figures/pch.pdf>]
[1083]
Underfull \vbox (badness 10000) has occurred while \output is active
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
[1103]
[1104]
[1105]
[1106]
[1107]
[1108]
[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
Underfull \hbox (badness 4954) in paragraph at lines 9309--9311
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1117]
[1118]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
[1119]
[1120]
[1121]
[1122]) (./grid-pkg.tex
Chapter 6.

[1123]
[1124]
[1125]
[1126]
[1127]
[1128]
[1129]
[1130]
[1131]
Underfull \hbox (badness 2680) in paragraph at lines 552--555
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1132]
[1133]
[1134]
[1135]
[1136] [1137]
[1138]
[1139]
[1140]
[1141]
[1142]
Underfull \hbox (badness 4279) in paragraph at lines 1191--1200
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
Underfull \hbox (badness 10000) in paragraph at lines 3106--3108
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1175]
[1176]
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \vbox (badness 10000) has occurred while \output is active
[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
[1204]
Underfull \hbox (badness 1067) in paragraph at lines 4845--4848
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1205]
[1206]
[1207]
[1208]
[1209]
[1210]
Underfull \hbox (badness 7256) in paragraph at lines 5196--5198
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
Underfull \hbox (badness 2142) in paragraph at lines 5652--5656
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1218]
[1219]
Underfull \hbox (badness 4699) in paragraph at lines 5734--5739
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]
[1238]
[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
[1247]
[1248]
[1249]
[1250]
[1251]) (./methods-pkg.tex
[1252]
Chapter 7.

[1253]
[1254]
[1255]
[1256]
[1257]
[1258]
[1259]
[1260]
Underfull \vbox (badness 3803) has occurred while \output is active
[1261]
Underfull \vbox (badness 10000) has occurred while \output is active
[1262]
[1263]
[1264]
[1265]
[1266]
[1267]
[1268]
[1269]
[1270]
[1271]
Underfull \hbox (badness 2237) in paragraph at lines 1393--1395
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1272]
[1273]
[1274]
[1275]
[1276]
[1277]
[1278]
[1279]
[1280]
Underfull \hbox (badness 10000) in paragraph at lines 1995--2000
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1995--2000
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1281]
[1282]
[1283]
Underfull \hbox (badness 2213) in paragraph at lines 2227--2232
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1284]
[1285]
[1286]
[1287]
[1288]
Underfull \hbox (badness 10000) in paragraph at lines 2592--2595
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1289]
[1290]
Underfull \hbox (badness 1132) in paragraph at lines 2732--2736
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1291]
Underfull \hbox (badness 1033) in paragraph at lines 2768--2773
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1292]
[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
Underfull \hbox (badness 1102) in paragraph at lines 3331--3333
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1299]
[1300]
[1301]
[1302]
[1303]
[1304]
Underfull \hbox (badness 10000) in paragraph at lines 3668--3677
[]\T1/ptm/m/n/10 The

[1305]
Underfull \hbox (badness 10000) in paragraph at lines 3788--3789
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1306]
Underfull \hbox (badness 10000) in paragraph at lines 3872--3873
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
[1313]
[1314]
[1315]
[1316]
Underfull \hbox (badness 1769) in paragraph at lines 4515--4521
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4515--4521
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1317]
[1318]
[1319]
Underfull \vbox (badness 5681) has occurred while \output is active
[1320]
[1321]
[1322]
[1323]
Underfull \vbox (badness 1681) has occurred while \output is active
[1324]
[1325]
Underfull \vbox (badness 10000) has occurred while \output is active
[1326]
Underfull \vbox (badness 10000) has occurred while \output is active
[1327]
[1328]
[1329]
Underfull \hbox (badness 4036) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1330]
Underfull \hbox (badness 3803) in paragraph at lines 5497--5499
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1331]
[1332]
[1333]
[1334]
Underfull \hbox (badness 1087) in paragraph at lines 5731--5736
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1335]
[1336]
[1337]
[1338]
[1339]
[1340]
[1341]
[1342]
Underfull \hbox (badness 1675) in paragraph at lines 6448--6454
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1343]
[1344]
[1345]
[1346]
Underfull \vbox (badness 10000) has occurred while \output is active
[1347]
[1348]
[1349]
[1350]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1351]
[1352]
[1353]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7236 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7240 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7241 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1354]
Underfull \hbox (badness 2050) in paragraph at lines 7303--7307
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1355]
[1356]
[1357]
Underfull \hbox (badness 1286) in paragraph at lines 7496--7498
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
[1385]
[1386]
[1387]
[1388]
[1389]
[1390]
[1391]
[1392]
[1393]
[1394]
[1395]
[1396]
[1397]
[1398]
[1399]
Underfull \hbox (badness 2197) in paragraph at lines 10545--10548
[]\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi
4/m/sl/10 https : / / johnmchambers . su . domains /

[1400]
Underfull \hbox (badness 1852) in paragraph at lines 10623--10627
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1401]
[1402]
[1403]
[1404]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1405]
[1406]
[1407]
[1408]
[1409]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1410]
[1411]
[1412]
[1413]
[1414]
[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
Underfull \hbox (badness 3386) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1427]
[1428]
[1429]) (./splines-pkg.tex
[1430]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
[1445]
[1446]) (./stats-pkg.tex
Chapter 10.

[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
Underfull \hbox (badness 1412) in paragraph at lines 903--905
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
Underfull \hbox (badness 2503) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798
 []  \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq(
rx[1], rx[2], length.out = 25) }[] 

[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
[1487]
[1488]
[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
Underfull \hbox (badness 2503) in paragraph at lines 3626--3629
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1504]
[1505]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3741.


[1506]
[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
[1524]
Underfull \hbox (badness 3989) in paragraph at lines 4916--4923
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
Underfull \hbox (badness 2556) in paragraph at lines 5581--5584
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1535]
[1536]
[1537]
[1538]
[1539]
[1540]
[1541]
Underfull \hbox (badness 2503) in paragraph at lines 5997--6001
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1542]
[1543]
[1544]
[1545]
[1546]
[1547]
[1548]
[1549]
[1550]
[1551]
[1552]
[1553]
[1554]
Underfull \hbox (badness 7081) in paragraph at lines 6802--6805
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6806--6808
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1555]
[1556]
[1557]
[1558]
[1559]
[1560]
Underfull \vbox (badness 10000) has occurred while \output is active
[1561]
[1562]
[1563]
Underfull \vbox (badness 10000) has occurred while \output is active
[1564]
[1565]
[1566]
[1567]
[1568]
Underfull \hbox (badness 10000) in paragraph at lines 7704--7707
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/
zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the

[1569]
[1570]
[1571]
Underfull \hbox (badness 2635) in paragraph at lines 7848--7851
[]\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T
1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view =

[1572]
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
[1579]
[1580]
[1581]
[1582]
[1583]
Underfull \hbox (badness 1960) in paragraph at lines 8597--8600
[]\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to 
be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which
 case

[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
Underfull \hbox (badness 2626) in paragraph at lines 9439--9442
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1597]
[1598]
Underfull \hbox (badness 2503) in paragraph at lines 9546--9550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1599]
[1600]
[1601]
[1602]
[1603]
[1604]
[1605]
[1606]
[1607]
[1608]
[1609]
Underfull \hbox (badness 1253) in paragraph at lines 10301--10306
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo
r all pa-ram-e-ters:

Underfull \hbox (badness 1337) in paragraph at lines 10306--10309
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1610]
[1611]
[1612]
Underfull \vbox (badness 10000) has occurred while \output is active
[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
[1621]
[1622]
[1623]
[1624]
Underfull \hbox (badness 4518) in paragraph at lines 11250--11255
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1625]
[1626]
[1627]
[1628]
[1629]
Underfull \hbox (badness 2142) in paragraph at lines 11621--11624
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11640--11643
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1630]
Underfull \hbox (badness 1708) in paragraph at lines 11702--11706
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1631]
[1632]
[1633]
Underfull \hbox (badness 1005) in paragraph at lines 11924--11928
[]\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been 
rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean
 dis-tances

[1634]
[1635]
[1636]
Underfull \hbox (badness 1694) in paragraph at lines 12118--12121
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1637]
[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
[1645]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12627 \aliasA{hat}{influence.measures}{hat}
                                             
[1646]
[1647]
Underfull \hbox (badness 1484) in paragraph at lines 12783--12785
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1648]
[1649]
[1650]
[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
Underfull \hbox (badness 10000) in paragraph at lines 13391--13393
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1659]
[1660]
[1661]
[1662]
[1663]
Underfull \hbox (badness 2894) in paragraph at lines 13735--13739
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
Underfull \hbox (badness 1281) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and 
Re-lated Re-gres-sion Meth-

[1676]
Underfull \hbox (badness 4518) in paragraph at lines 14567--14572
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1677]
[1678]
[1679]
[1680]
[1681]
[1682]
[1683]
[1684]
[1685]
[1686]
Underfull \hbox (badness 1596) in paragraph at lines 15205--15208
\T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(<loadings>, ...)[]\T1/ptm/m/n/10 , he
nce, e.g., []\T1/zi4/m/sl/10 cutoff = <frac>[]\T1/ptm/m/n/10 ; ig-nored for

[1687]
Underfull \hbox (badness 4518) in paragraph at lines 15263--15268
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1688]
[1689]
Underfull \hbox (badness 6412) in paragraph at lines 15404--15408
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 15411--15413
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
Underfull \hbox (badness 2503) in paragraph at lines 16503--16507
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1708]
[1709]
Underfull \vbox (badness 3803) has occurred while \output is active
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 10000) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1717]
[1718]
[1719]
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
[1734]
[1735]
[1736]
[1737]
[1738]
[1739]
[1740]
[1741]
[1742]
Underfull \hbox (badness 1158) in paragraph at lines 18695--18698
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1743]
[1744]
Underfull \vbox (badness 3803) has occurred while \output is active
[1745]
Underfull \vbox (badness 10000) has occurred while \output is active
[1746]
Underfull \vbox (badness 10000) has occurred while \output is active
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1377) in paragraph at lines 19758--19763
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19763--19766
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19776--19780
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19776--19780
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19784--19788
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1761]
[1762]
[1763]
Underfull \vbox (badness 10000) has occurred while \output is active
[1764]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1765]
[1766]
[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
Underfull \hbox (badness 1337) in paragraph at lines 20505--20508
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
Underfull \hbox (badness 10000) in paragraph at lines 20985--20991
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1782]
[1783]
[1784]
[1785]
[1786]
[1787]
[1788]
Underfull \hbox (badness 1194) in paragraph at lines 21419--21422
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
Underfull \hbox (badness 2503) in paragraph at lines 21801--21804
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1795]
Underfull \hbox (badness 3919) in paragraph at lines 21828--21830
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1796]
[1797]
[1798]
[1799]
[1800]
Underfull \hbox (badness 1337) in paragraph at lines 22168--22171
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
Underfull \hbox (badness 10000) in paragraph at lines 23168--23174
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1817]
[1818]
[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
[1835]
[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
Underfull \hbox (badness 1337) in paragraph at lines 24658--24664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1842]
[1843]
[1844]
[1845]
[1846]
[1847]
[1848]
[1849]
Underfull \hbox (badness 1436) in paragraph at lines 25147--25150
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

Underfull \hbox (badness 1009) in paragraph at lines 25150--25153
[]\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro
rs when []\T1/zi4/m/sl/10 j <-

[1850]
[1851]
Underfull \hbox (badness 10000) in paragraph at lines 25316--25317
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
Underfull \hbox (badness 1824) in paragraph at lines 26289--26295
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 26289--26295
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

Underfull \hbox (badness 10000) in paragraph at lines 26310--26313
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
[1874]
[1875]
Underfull \vbox (badness 10000) has occurred while \output is active
[1876]
[1877]
Underfull \hbox (badness 2165) in paragraph at lines 26894--26899
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1878]
[1879]
[1880]
Underfull \hbox (badness 1867) in paragraph at lines 27102--27104
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 27118--27122
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1881]
[1882]
[1883]
[1884]
[1885]
[1886]
[1887]
[1888]
[1889]
[1890]
[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
Underfull \vbox (badness 10000) has occurred while \output is active
[1907]
Underfull \hbox (badness 3514) in paragraph at lines 28799--28804
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1908]
[1909]
[1910]
[1911]
[1912]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 29069--29075
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1913]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1914]
[1915]
[1916]
Underfull \hbox (badness 3514) in paragraph at lines 29302--29307
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1917]
[1918]
Underfull \hbox (badness 3514) in paragraph at lines 29389--29394
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1919]
Underfull \hbox (badness 3514) in paragraph at lines 29454--29459
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1920]
[1921]
Underfull \hbox (badness 3514) in paragraph at lines 29548--29553
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1922]
Underfull \hbox (badness 6691) in paragraph at lines 29640--29645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
Underfull \hbox (badness 4024) in paragraph at lines 30135--30138
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
Underfull \hbox (badness 5431) in paragraph at lines 30753--30755
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1941]
[1942]
[1943]
[1944]
Underfull \hbox (badness 5431) in paragraph at lines 30971--30974
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1945]
[1946]
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 31286--31290
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
Underfull \hbox (badness 1127) in paragraph at lines 31428--31431
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1953]
[1954]
[1955]
Underfull \hbox (badness 1616) in paragraph at lines 31646--31649
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1956]
[1957]
[1958]
[1959]
[1960]
[1961]
[1962]
[1963]
[1964]
[1965]
[1966]
[1967]
[1968]
[1969]
[1970]
[1971]
[1972]
[1973]
[1974]
[1975]
Underfull \hbox (badness 3557) in paragraph at lines 32900--32904
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1976]
[1977]
[1978]
Underfull \vbox (badness 10000) has occurred while \output is active
[1979]
[1980]
[1981]
Underfull \hbox (badness 1337) in paragraph at lines 33268--33272
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1982]
[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
[1990]
Underfull \hbox (badness 1337) in paragraph at lines 33816--33820
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1991]
[1992]
[1993]
[1994]
[1995]
[1996]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1997]
[1998]
[1999]
[2000]
[2001]) (./stats4-pkg.tex
[2002]
Chapter 11.

[2003]
[2004]
[2005]
Underfull \vbox (badness 10000) has occurred while \output is active
[2006]
Underfull \vbox (badness 10000) has occurred while \output is active
[2007]
[2008]
[2009]
[2010]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.506 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[2011]
[2012]
[2013]) (./tcltk-pkg.tex
[2014]
Chapter 12.

[2015]
[2016]
[2017]
[2018]
[2019]
[2020]
[2021]
Underfull \vbox (badness 10000) has occurred while \output is active
[2022]
Underfull \vbox (badness 10000) has occurred while \output is active
[2023]
Underfull \hbox (badness 1546) in paragraph at lines 687--694
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[2024]
[2025]
[2026]
[2027]
[2028]
Underfull \vbox (badness 10000) has occurred while \output is active
[2029]
[2030]
[2031]
[2032]
[2033]
[2034]
[2035]
[2036]) (./tools-pkg.tex
Chapter 13.

[2037]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2038]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2039]
[2040]
[2041]
Underfull \hbox (badness 1308) in paragraph at lines 326--339
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 326--339
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2042]
[2043]
Underfull \hbox (badness 3039) in paragraph at lines 429--431
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2044]
Underfull \hbox (badness 1142) in paragraph at lines 501--505
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2045]
[2046]
[2047]
[2048]
[2049]
[2050]
[2051] [2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
Underfull \hbox (badness 1014) in paragraph at lines 1346--1348
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1352--1354
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2059]
Underfull \hbox (badness 10000) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2060]
[2061]
[2062]
[2063]
[2064]
[2065]
Underfull \hbox (badness 10000) in paragraph at lines 1783--1794
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 
, []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR
AN_check_details() []\T1/ptm/m/n/10 and

[2066]
[2067]
Underfull \hbox (badness 4096) in paragraph at lines 1934--1942
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2068]
Underfull \hbox (badness 1082) in paragraph at lines 1944--1946
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2069]
[2070]
[2071]
[2072]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2073]
[2074]
[2075]
[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 3386) in paragraph at lines 2736--2739
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2081]
[2082]
[2083]
Underfull \hbox (badness 4096) in paragraph at lines 2899--2907
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2084]
[2085]
[2086]
[2087]
[2088]
[2089]
[2090]
[2091]
[2092]
[2093]
[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
Underfull \hbox (badness 1424) in paragraph at lines 3933--3935
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2100]
[2101]
[2102]
Underfull \hbox (badness 4792) in paragraph at lines 4106--4107
[]\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in

[2103]
[2104]
[2105]
[2106]
[2107]
[2108]
[2109]
[2110]
[2111]
[2112]
Underfull \hbox (badness 10000) in paragraph at lines 4717--4719
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2113]
[2114]
[2115]
[2116]
[2117]
[2118]
Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047
 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping")    # "a Small Fox is .."
     (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha
nge)% i.e. BUG[] 

[2119]
[2120]
[2121]
Underfull \hbox (badness 1796) in paragraph at lines 5256--5261
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=

[2122]
Underfull \hbox (badness 1838) in paragraph at lines 5342--5348
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 5342--5348
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
Underfull \hbox (badness 2197) in paragraph at lines 5693--5703
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2129]
Underfull \hbox (badness 1571) in paragraph at lines 5768--5772
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2130]
[2131]
[2132]
[2133]) (./utils-pkg.tex
[2134]
Chapter 14.

[2135]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',

[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
Underfull \hbox (badness 10000) in paragraph at lines 727--733
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 727--733
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2146]
[2147]
[2148]
Underfull \hbox (badness 3861) in paragraph at lines 942--947
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2149]
[2150]
[2151]
Underfull \hbox (badness 10000) in paragraph at lines 1146--1148
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2152]
[2153]
[2154]
Underfull \vbox (badness 3803) has occurred while \output is active
[2155]
[2156]
[2157]
[2158]
[2159]
[2160]
[2161]
Underfull \hbox (badness 3919) in paragraph at lines 1755--1758
[]\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer
red from the

Underfull \hbox (badness 1371) in paragraph at lines 1765--1767
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
Underfull \hbox (badness 2057) in paragraph at lines 2387--2389
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2172]
[2173]
Underfull \hbox (badness 2150) in paragraph at lines 2473--2480
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2473--2480
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2174]
[2175]
[2176]
[2177]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2756 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2178]
[2179]
[2180]
[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
[2195]
[2196]
[2197]
[2198]
Underfull \hbox (badness 6842) in paragraph at lines 4074--4079
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2199]
Underfull \hbox (badness 1430) in paragraph at lines 4156--4160
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2200]
Underfull \hbox (badness 1184) in paragraph at lines 4232--4248
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2201]
[2202]
Underfull \hbox (badness 10000) in paragraph at lines 4382--4384
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2203]
[2204]
[2205]
[2206]
[2207]
[2208]
[2209]
[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
[2216]
[2217]
[2218]
[2219]
[2220]
[2221]
[2222]
[2223]
Underfull \hbox (badness 1622) in paragraph at lines 5684--5688
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2224]
[2225]
[2226]
[2227]
[2228]
[2229]
Underfull \hbox (badness 1448) in paragraph at lines 6069--6074
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2230]
[2231]
[2232]
[2233]
[2234]
[2235]
[2236]
[2237]
Underfull \hbox (badness 1371) in paragraph at lines 6629--6631
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2238]
[2239]
Underfull \hbox (badness 1502) in paragraph at lines 6718--6724
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6718--6724
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2240]
[2241]
[2242]
Underfull \hbox (badness 10000) in paragraph at lines 6904--6913
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6904--6913
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2243]
Underfull \hbox (badness 2150) in paragraph at lines 6967--6970
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2244]
[2245]
Underfull \hbox (badness 3118) in paragraph at lines 7105--7107
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2246]
[2247]
Underfull \hbox (badness 1325) in paragraph at lines 7283--7287
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2248]
[2249]
Underfull \hbox (badness 1424) in paragraph at lines 7375--7378
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2250]
Underfull \hbox (badness 3219) in paragraph at lines 7457--7464
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7457--7464
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

Underfull \hbox (badness 1629) in paragraph at lines 7470--7472
[]\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from 
[][]$\T1/zi4/m/it/10 https : / / CRAN .

[2251]
Underfull \hbox (badness 1024) in paragraph at lines 7586--7589
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will

[2252]
Underfull \hbox (badness 10000) in paragraph at lines 7620--7625
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2253]
Underfull \hbox (badness 5133) in paragraph at lines 7685--7689
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2254]
[2255]
[2256]
[2257]
[2258]
[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
Underfull \hbox (badness 10000) in paragraph at lines 8356--8358
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2265]
[2266]
[2267]
[2268]
[2269]
[2270]
[2271]
[2272] [2273]
[2274]
Underfull \hbox (badness 3690) in paragraph at lines 8992--8995
[]\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in
g[][][] for the pack-age

[2275]
[2276]
[2277]
Underfull \hbox (badness 2310) in paragraph at lines 9145--9150
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
[2284]
[2285]
[2286]
Underfull \hbox (badness 1248) in paragraph at lines 9725--9729
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2287]
[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 2600) in paragraph at lines 10024--10027
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2292]
[2293]
[2294]
[2295]
[2296]
[2297]
[2298]
[2299]
[2300]
Underfull \hbox (badness 1097) in paragraph at lines 10662--10665
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2301]
[2302]
Underfull \hbox (badness 3000) in paragraph at lines 10798--10803
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2303]
[2304]
[2305]
[2306]
[2307]
[2308]
[2309]
[2310]
[2311]
Underfull \hbox (badness 2134) in paragraph at lines 11395--11400
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2312]
Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2313]
[2314]
[2315]
[2316]
[2317]
[2318]
[2319]
[2320]
Underfull \hbox (badness 6110) in paragraph at lines 11951--11954
\T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki
pedia . org / w / index . php ? title = Roman _ numerals &

[2321]
[2322]
[2323]
[2324]
[2325]
[2326]
[2327]
Underfull \hbox (badness 4060) in paragraph at lines 12394--12397
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2328]
[2329]
[2330]
[2331]
Underfull \hbox (badness 2150) in paragraph at lines 12673--12675
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /

[2332]
[2333]
Underfull \hbox (badness 5832) in paragraph at lines 12762--12767
[]\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/
it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/
m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc[]\T1/ptm/m/n/10 ,

[2334]
[2335]
Underfull \vbox (badness 3803) has occurred while \output is active
[2336]
[2337]
Underfull \hbox (badness 10000) in paragraph at lines 13038--13046
[]\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/
m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo
c[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13059--13063
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

[2338]
Underfull \hbox (badness 10000) in paragraph at lines 13092--13098
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

Underfull \hbox (badness 2762) in paragraph at lines 13107--13113
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2339]
[2340]
Underfull \hbox (badness 1009) in paragraph at lines 13296--13308
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

[2341]
Underfull \hbox (badness 4779) in paragraph at lines 13366--13368
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]
Underfull \hbox (badness 3780) in paragraph at lines 13821--13827
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2349]
Underfull \hbox (badness 2635) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2350]
[2351]
[2352]
Underfull \hbox (badness 2302) in paragraph at lines 14048--14050
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2353]
[2354]
[2355]
[2356]
[2357]
Underfull \hbox (badness 4441) in paragraph at lines 14347--14352
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/it/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14356--14359
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2358]
[2359]
[2360]
[2361]
[2362]
[2363]
[2364]
Underfull \hbox (badness 2932) in paragraph at lines 14786--14793
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14786--14793
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2365]
[2366]
[2367]
[2368]
[2369]
[2370]
Underfull \hbox (badness 6510) in paragraph at lines 15194--15198
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

Underfull \hbox (badness 10000) in paragraph at lines 15201--15204
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 15201--15204
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2371]
[2372]
[2373]
[2374]
[2375]
[2376]
[2377]
[2378]
[2379]
[2380]
[2381]
Underfull \hbox (badness 10000) in paragraph at lines 15905--15910
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15905--15910
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15911--15913
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

[2382]
Underfull \hbox (badness 10000) in paragraph at lines 15975--15978
[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2383]
[2384]
[2385]
[2386]
[2387]
[2388]
[2389]
[2390]
[2391]
[2392]
[2393]
[2394]
[2395]
[2396]
[2397]
[2398])
No file refman.ind.
(./refman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix.Rdash.class} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.MethodsList.Rdash.class} has been referenced bu
t does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pipe\\unhbox\040\\voidb@x\040\\unskip\040\040\\
ignorespaces\040operator} has been referenced but does not exist, replaced by a
 fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.xfig} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.defunct} has been referenced but doe
s not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt0900
mkdir: cannot create directory '././nonexistent': Permission denied
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt0900
This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt0900.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf
 Ok [100] [109] [98] [99] [108])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf
 Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44]
[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95]
[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137]
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149]
[150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
[162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174]
[175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf
 Ok [185] [178] [179] [170] [186])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf
 Ok [188] [189] [190]) ) ) )
Font metrics written on tctt0900.tfm.
Output written on tctt0900.600gf (128 characters, 17564 bytes).
Transcript written on tctt0900.log.
mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tctt0900.600pk: successfully generated.
 </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/
helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a
.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2399 pages, 6115539 bytes).
Transcript written on refman.log.
This is makeindex, version 2.17 [TeX Live 2025/dev] (kpathsea + Thai support).
Scanning input file refman.idx...................done (15437 entries accepted, 43 rejected).
Sorting entries...................................................................................................................................................................done (238703 comparisons).
Generating output file refman.ind..................done (15395 lines written, 56 warnings).
Output written in refman.ind.
Transcript written in refman.ilg.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./refman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./refman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 150--158
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 338--341
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 573--579
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657
 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when  
\TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 
`[] 

[43]
[44]
[45]
[46]
[47]
Underfull \hbox (badness 1721) in paragraph at lines 2977--2981
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[48]
[49]
[50]
[51]
[52]
[53]
[54]
Underfull \hbox (badness 2538) in paragraph at lines 3469--3472
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[55]
[56]
[57]
[58]
[59]
Underfull \vbox (badness 3803) has occurred while \output is active
[60]
[61]
[62]
[63]
[64]
[65]
[66]
[67]
Underfull \hbox (badness 10000) in paragraph at lines 4265--4267
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
[88]
Underfull \hbox (badness 2521) in paragraph at lines 5623--5625
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
[108]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
Underfull \hbox (badness 2253) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn
ection[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 2846) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke
t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class

[118]
[119]
[120]
[121]
Underfull \hbox (badness 2261) in paragraph at lines 7873--7878
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[122]
[123]
[124]
Underfull \vbox (badness 10000) has occurred while \output is active
[125]
[126]
[127]
[128]
[129]
[130]
[131]
[132]
[133]
Underfull \hbox (badness 2096) in paragraph at lines 8618--8622
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[134]
[135]
Underfull \hbox (badness 2351) in paragraph at lines 8734--8737
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[136]
[137]
[138]
[139]
[140]
Underfull \hbox (badness 4479) in paragraph at lines 9051--9062
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[141]
[142]
[143]
[144]
[145]
[146]
Underfull \hbox (badness 2698) in paragraph at lines 9465--9471
[]\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 
mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.
finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n
/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 9492--9504
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9492--9504
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[147]
[148]
[149]
Underfull \hbox (badness 3657) in paragraph at lines 9692--9694
[][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac
-tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , 
[]\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 ,

[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
[158]
[159]
Underfull \hbox (badness 1178) in paragraph at lines 10351--10355
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
[194]
[195]
[196]
Underfull \hbox (badness 2744) in paragraph at lines 12723--12725
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[197]
[198]
[199]
[200]
[201]
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
[227]
[228]
Underfull \hbox (badness 2253) in paragraph at lines 14943--14945
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

[229]
Underfull \hbox (badness 1490) in paragraph at lines 14978--14981
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[230]
Underfull \hbox (badness 1565) in paragraph at lines 15064--15068
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[231]
Underfull \hbox (badness 4927) in paragraph at lines 15115--15117
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[232]
[233]
Underfull \hbox (badness 1466) in paragraph at lines 15266--15269
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[234]
[235]
Underfull \hbox (badness 10000) in paragraph at lines 15397--15401
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15408--15411
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[236]
[237]
[238]
[239]
[240]
Underfull \hbox (badness 3965) in paragraph at lines 15712--15716
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[241]
[242]
[243]
[244]
[245]
[246]
[247]
[248]
Underfull \hbox (badness 5260) in paragraph at lines 16225--16225
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[249]
[250]
[251]
[252]
[253]
Underfull \hbox (badness 4429) in paragraph at lines 16517--16520
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[254]
[255]
Underfull \hbox (badness 10000) in paragraph at lines 16624--16626
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[256]
Underfull \hbox (badness 2035) in paragraph at lines 16697--16701
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[257]
Underfull \vbox (badness 10000) has occurred while \output is active
[258]
[259]
[260]
[261]
[262]
[263]
[264]
[265]
[266]
Underfull \hbox (badness 2452) in paragraph at lines 17323--17327
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17323--17327
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[267]
[268]
[269]
Underfull \hbox (badness 1092) in paragraph at lines 17516--17521
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[270]
[271]
[272]
Underfull \hbox (badness 6741) in paragraph at lines 17769--17773
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[273]
[274]
[275]
[276]
[277]
[278]
[279]
[280]
[281]
[282]
[283]
[284]
Underfull \vbox (badness 10000) has occurred while \output is active
[285]
[286]
[287]
[288]
[289]
[290]
[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 1769) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[296]
[297]
[298]
[299]
[300]
Underfull \hbox (badness 10000) in paragraph at lines 19592--19594
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19598--19607
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[301]
[302]
[303]
[304]
[305]
[306]
[307]
[308]
[309]
Underfull \hbox (badness 1442) in paragraph at lines 20210--20212
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[310]
[311]
Underfull \hbox (badness 2452) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[312]
[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 1248) in paragraph at lines 20704--20707
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[318]
[319]
[320]
[321]
[322]
Underfull \hbox (badness 4739) in paragraph at lines 20975--20977
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[323]
[324]
[325]
[326]
[327]
Underfull \vbox (badness 3803) has occurred while \output is active
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
[337]
[338]
[339]
[340]
[341]
Underfull \hbox (badness 2469) in paragraph at lines 22168--22173
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[342]
[343]
Underfull \hbox (badness 1675) in paragraph at lines 22255--22264
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 22265--22278
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 22313--22316
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 22313--22316
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[344]
[345]
Underfull \hbox (badness 1014) in paragraph at lines 22448--22453
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
[354]
[355]
[356]
[357]
[358]
Underfull \hbox (badness 1264) in paragraph at lines 23309--23317
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

[359]
Underfull \hbox (badness 4441) in paragraph at lines 23344--23347
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[360]
[361]
[362]
[363]
[364]
[365]
[366]
[367]
[368]
[369]
[370]
[371]
Underfull \hbox (badness 5231) in paragraph at lines 24169--24171
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
[384]
[385]
[386]
[387]
[388]
[389]
[390]
Underfull \hbox (badness 6380) in paragraph at lines 25335--25341
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 25335--25341
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[391]
[392]
[393]
[394]
[395]
[396]
[397]
[398]
Underfull \hbox (badness 2790) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[399]
[400]
[401]
[402]
[403]
Underfull \hbox (badness 1194) in paragraph at lines 26180--26183
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[404]
[405]
[406]
Underfull \hbox (badness 2368) in paragraph at lines 26390--26396
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[407]
[408]
[409]
[410]
[411]
[412]
Underfull \hbox (badness 10000) in paragraph at lines 26783--26786
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[413]
[414]
[415]
[416]
[417]
[418]
[419]
[420]
[421]
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27435--27437
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[423]
[424]
[425]
[426]
[427]
[428]
[429]
Underfull \hbox (badness 2443) in paragraph at lines 27928--27936
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[430]
[431]
[432]
[433]
[434]
[435]
[436]
Underfull \hbox (badness 1881) in paragraph at lines 28360--28363
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 28385--28387
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[437]
[438]
Underfull \hbox (badness 2142) in paragraph at lines 28532--28536
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

[439]
Underfull \hbox (badness 1968) in paragraph at lines 28589--28594
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[440]
[441]
[442]
Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28910--28913
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

[443]
Underfull \hbox (badness 2689) in paragraph at lines 28936--28938
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28984--28989
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 29002--29005
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[444]
[445]
[446]
[447]
[448]
[449]
Underfull \hbox (badness 10000) in paragraph at lines 29420--29424
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[450]
[451]
[452]
Underfull \hbox (badness 10000) in paragraph at lines 29569--29572
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[453]
Underfull \hbox (badness 7925) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29651--29655
[]\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is 
al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]
\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29656--29665
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s,

[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
[463]
[464]
[465]
[466]
[467]
[468]
[469]
Underfull \hbox (badness 2726) in paragraph at lines 30692--30695
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
[482]
[483]
[484]
[485]
[486]
[487]
[488]
Underfull \vbox (badness 3803) has occurred while \output is active
[489]
[490]
[491]
[492]
[493]
[494]
[495]
[496]
[497]
Underfull \hbox (badness 1533) in paragraph at lines 32526--32529
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[498]
[499]
[500]
Underfull \hbox (badness 1163) in paragraph at lines 32698--32709
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[501]
[502]
[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
[520]
[521]
[522]
[523]
[524]
[525]
[526]
Underfull \hbox (badness 10000) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 34403--34405
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 34406--34410
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[527]
[528]
Underfull \vbox (badness 10000) has occurred while \output is active
[529]
[530]
[531]
[532]
[533]
[534]
[535]
[536]
Underfull \hbox (badness 1655) in paragraph at lines 35014--35016
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
[549]
[550]
[551]
[552]
[553]
[554]
[555]
Underfull \hbox (badness 2261) in paragraph at lines 36229--36234
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
[565]
[566]
[567]
[568]
[569]
[570]
[571]
[572]
Underfull \hbox (badness 3668) in paragraph at lines 37332--37336
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[573]
Underfull \hbox (badness 10000) in paragraph at lines 37423--37434
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
[591]
[592]
[593]
Underfull \vbox (badness 3803) has occurred while \output is active
[594]
[595]
[596]
[597]
[598]
[599]
Underfull \hbox (badness 10000) in paragraph at lines 39086--39088
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[600]
[601]
[602]
[603]
[604]
[605]
Underfull \hbox (badness 2913) in paragraph at lines 39504--39508
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[606]
[607]
[608]
[609]
Underfull \hbox (badness 1072) in paragraph at lines 39755--39759
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 39760--39764
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

[610]
Underfull \hbox (badness 3009) in paragraph at lines 39815--39822
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[611]
[612]
[613]
Underfull \hbox (badness 2644) in paragraph at lines 40050--40054
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
[630]
[631]
[632]
[633]
[634]
[635]
[636]
[637]
[638]
Underfull \hbox (badness 4144) in paragraph at lines 41632--41640
[]\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][
][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary
.data.frame[]\T1/ptm/m/n/10 ). In

Underfull \hbox (badness 1158) in paragraph at lines 41642--41644
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[639]
[640]
[641]
[642]
[643]
[644]
[645] [646]
[647]
[648]
[649]
Underfull \hbox (badness 1137) in paragraph at lines 42291--42297
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 42309--42314
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[650]
[651]
Underfull \hbox (badness 1616) in paragraph at lines 42432--42437
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[652]
[653]
[654]
[655]
Underfull \vbox (badness 3803) has occurred while \output is active
[656]
[657]
[658]
[659]
[660]
Underfull \hbox (badness 1472) in paragraph at lines 42980--42983
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[661]
[662]
[663]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 43192.


[664]
[665]
[666]
[667]
[668]
[669]
[670]
[671]
[672]
[673]
[674]
[675]
Underfull \hbox (badness 10000) in paragraph at lines 43937--43941
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
[684]
[685]
[686]
[687]
[688]
[689]
[690]
[691]
[692]
[693]
Underfull \hbox (badness 10000) in paragraph at lines 45135--45138
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[694]
[695]
[696]
[697]
[698]
[699]
Underfull \vbox (badness 10000) has occurred while \output is active
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
Underfull \hbox (badness 1990) in paragraph at lines 46056--46064
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 46056--46064
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
[720]
[721]
[722]
[723]
[724]
[725]
[726]
[727]
[728]
[729]
Underfull \hbox (badness 1014) in paragraph at lines 47504--47507
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[730]
[731]
Underfull \hbox (badness 2401) in paragraph at lines 47638--47642
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[732]
[733]
Underfull \hbox (badness 3492) in paragraph at lines 47765--47767
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[734]
[735]
Underfull \hbox (badness 2111) in paragraph at lines 47851--47856
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[736]
[737]
[738]
[739]
[740]
[741]
[742]
[743]
[744]
[745]
Underfull \hbox (badness 5417) in paragraph at lines 48517--48521
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[746]
Underfull \hbox (badness 10000) in paragraph at lines 48578--48582
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[747]) (./compiler-pkg.tex
[748]
Chapter 2.

[749]
[750]
[751]
[752]) (./datasets-pkg.tex
Chapter 3.

[753]
Underfull \hbox (badness 1199) in paragraph at lines 55--59
[]\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e
ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN

[754]
[755]
[756]
[757] [758]
[759]
[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]
[774]
[775]
[776]
[777]
[778]
[779]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704
 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co
l = adjustcolor("thistle", 1/3))[] 

[780]
[781]
[782]
[783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[817]
[818]
[819]
[820]
Underfull \hbox (badness 10000) in paragraph at lines 4210--4216
[]\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been
 avail-able at

[821]
[822]
[823]
[824]
[825]
[826]
[827]
[828]
[829]
[830]
[831]
[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]) (./grDevices-pkg.tex
Chapter 4.

[841]
[842]
[843]
[844]
[845]
Underfull \hbox (badness 2221) in paragraph at lines 284--288
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 299--304
[]\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1
0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1
0 in

[846]
[847]
[848]
[849]
[850]
[851]
[852]
[853]
[854]
[855]
Underfull \hbox (badness 1424) in paragraph at lines 925--927
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[856]
Underfull \vbox (badness 3803) has occurred while \output is active
[857]
[858]
[859]
[860]
Underfull \hbox (badness 5175) in paragraph at lines 1253--1255
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[861]
[862]
Underfull \hbox (badness 2512) in paragraph at lines 1372--1374
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[863]
[864]
[865]
[866]
[867]
Underfull \hbox (badness 1490) in paragraph at lines 1672--1677
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1685--1689
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[868]
[869]
[870]
[871]
[872]
[873]
[874]
Underfull \hbox (badness 1325) in paragraph at lines 2100--2110
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[875]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2214
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[876]
[877]
[878]
Underfull \hbox (badness 6758) in paragraph at lines 2400--2403
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[879]
[880]
[881]
[882]
[883]
[884]
Underfull \hbox (badness 1694) in paragraph at lines 2759--2762
[]\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T
1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to

[885]
[886]
[887]
[888]
[889]
[890]
Underfull \hbox (badness 10000) in paragraph at lines 3171--3172


[891]
[892]
[893]
[894]
[895]
[896]
[897]
[898]
[899]
[900]
[901]
[902]
Underfull \vbox (badness 3803) has occurred while \output is active
[903]
[904]
[905]
Underfull \hbox (badness 1484) in paragraph at lines 4137--4140
\T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki
pedia . org / w / index . php ? title = HCL _ color _ space &

[906]
Underfull \vbox (badness 10000) has occurred while \output is active
[907]
[908]
[909]
[910]
Underfull \hbox (badness 1418) in paragraph at lines 4463--4470
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[911]
[912]
[913]
[914]
Underfull \hbox (badness 1152) in paragraph at lines 4750--4757
[]\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col
ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 ,

[915]
[916]
[917]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4933 \aliasA{symbol}{plotmath}{symbol}
                                         [918] [919]
[920]
[921]
Underfull \vbox (badness 3803) has occurred while \output is active
[922]
[923]
Underfull \hbox (badness 1584) in paragraph at lines 5325--5327
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5329--5336
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[924]
[925]
[926]
[927]
Underfull \hbox (badness 1377) in paragraph at lines 5631--5636
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[928]
[929]
Underfull \hbox (badness 1377) in paragraph at lines 5735--5740
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[930]
Underfull \hbox (badness 7344) in paragraph at lines 5804--5806
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[931]
[932]
Underfull \hbox (badness 2035) in paragraph at lines 5944--5953
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[933]
Underfull \hbox (badness 10000) in paragraph at lines 6010--6015
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[934]
[935]
[936]
Underfull \hbox (badness 1546) in paragraph at lines 6151--6159
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[937]
[938]
[939]
[940]
[941]
[942]
Underfull \hbox (badness 3343) in paragraph at lines 6595--6598
[]\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla
y-ing the Graph-ics En-

Underfull \hbox (badness 7740) in paragraph at lines 6595--6598
\T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech 
. wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 /

[943]
[944]
Underfull \hbox (badness 10000) in paragraph at lines 6699--6702
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[945]
[946]
[947]
[948]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[949]
[950]
[951]
[952]
[953]
[954]
[955]
[956]
[957]
[958]
Underfull \hbox (badness 1189) in paragraph at lines 7565--7567
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[959]
Underfull \hbox (badness 10000) in paragraph at lines 7670--7672
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
[968]) (./graphics-pkg.tex
Chapter 5.

[969]
[970]
[971]
[972]
[973]
[974]
[975]
[976]
[977]
[978]
[979]
Underfull \vbox (badness 3803) has occurred while \output is active
[980]
[981]
[982]
[983]
[984]
[985]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[986]
Underfull \vbox (badness 10000) has occurred while \output is active
[987]
[988]
[989]
[990]
[991]
[992]
Underfull \hbox (badness 4634) in paragraph at lines 1459--1462
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[993]
[994]
[995]
[996]
[997]
[998]
[999]
[1000]
[1001]
Underfull \vbox (badness 3803) has occurred while \output is active
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
Underfull \hbox (badness 1728) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[1009]
[1010]
Underfull \hbox (badness 1009) in paragraph at lines 2555--2562
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
[1021]
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \vbox (badness 10000) has occurred while \output is active
[1035]
[1036]
[1037]
[1038]
[1039]
[1040]
Underfull \vbox (badness 3803) has occurred while \output is active
[1041]
[1042]
[1043]
[1044]
[1045]
[1046]
[1047]
Underfull \hbox (badness 3229) in paragraph at lines 4852--4857
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1048]
[1049]
[1050]
[1051]
[1052]
Underfull \hbox (badness 1107) in paragraph at lines 5352--5358
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1053]
[1054]
Underfull \hbox (badness 10000) in paragraph at lines 5481--5484


[1055 </build/r-base-4.6.0/library/graphics/help/figures/mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5542--5544


Underfull \vbox (badness 10000) has occurred while \output is active
[1056]
[1057 </build/r-base-4.6.0/library/graphics/help/figures/oma.pdf>]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6231 \aliasA{plot}{plot.default}{plot}
                                        
[1067]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1
0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are

Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its
 are com-puted from

[1068]
[1069]
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168
[][] 

[1082 </build/r-base-4.6.0/library/graphics/help/figures/pch.pdf>]
[1083]
Underfull \vbox (badness 10000) has occurred while \output is active
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
[1103]
[1104]
[1105]
[1106]
[1107]
[1108]
[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
Underfull \hbox (badness 4954) in paragraph at lines 9309--9311
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1117]
[1118]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
[1119]
[1120]
[1121]
[1122]) (./grid-pkg.tex
Chapter 6.

[1123]
[1124]
[1125]
[1126]
[1127]
[1128]
[1129]
[1130]
[1131]
Underfull \hbox (badness 2680) in paragraph at lines 552--555
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1132]
[1133]
[1134]
[1135]
[1136] [1137]
[1138]
[1139]
[1140]
[1141]
[1142]
Underfull \hbox (badness 4279) in paragraph at lines 1191--1200
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
Underfull \hbox (badness 10000) in paragraph at lines 3106--3108
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1175]
[1176]
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \vbox (badness 10000) has occurred while \output is active
[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
[1204]
Underfull \hbox (badness 1067) in paragraph at lines 4845--4848
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1205]
[1206]
[1207]
[1208]
[1209]
[1210]
Underfull \hbox (badness 7256) in paragraph at lines 5196--5198
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
Underfull \hbox (badness 2142) in paragraph at lines 5652--5656
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1218]
[1219]
Underfull \hbox (badness 4699) in paragraph at lines 5734--5739
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]
[1238]
[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
[1247]
[1248]
[1249]
[1250]
[1251]) (./methods-pkg.tex
[1252]
Chapter 7.

[1253]
[1254]
[1255]
[1256]
[1257]
[1258]
[1259]
[1260]
Underfull \vbox (badness 3803) has occurred while \output is active
[1261]
Underfull \vbox (badness 10000) has occurred while \output is active
[1262]
[1263]
[1264]
[1265]
[1266]
[1267]
[1268]
[1269]
[1270]
[1271]
Underfull \hbox (badness 2237) in paragraph at lines 1393--1395
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1272]
[1273]
[1274]
[1275]
[1276]
[1277]
[1278]
[1279]
[1280]
Underfull \hbox (badness 10000) in paragraph at lines 1995--2000
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1995--2000
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1281]
[1282]
[1283]
Underfull \hbox (badness 2213) in paragraph at lines 2227--2232
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1284]
[1285]
[1286]
[1287]
[1288]
Underfull \hbox (badness 10000) in paragraph at lines 2592--2595
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1289]
[1290]
Underfull \hbox (badness 1132) in paragraph at lines 2732--2736
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1291]
Underfull \hbox (badness 1033) in paragraph at lines 2768--2773
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1292]
[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
Underfull \hbox (badness 1102) in paragraph at lines 3331--3333
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1299]
[1300]
[1301]
[1302]
[1303]
[1304]
Underfull \hbox (badness 10000) in paragraph at lines 3668--3677
[]\T1/ptm/m/n/10 The

[1305]
Underfull \hbox (badness 10000) in paragraph at lines 3788--3789
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1306]
Underfull \hbox (badness 10000) in paragraph at lines 3872--3873
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
[1313]
[1314]
[1315]
[1316]
Underfull \hbox (badness 1769) in paragraph at lines 4515--4521
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4515--4521
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1317]
[1318]
[1319]
Underfull \vbox (badness 5681) has occurred while \output is active
[1320]
[1321]
[1322]
[1323]
Underfull \vbox (badness 1681) has occurred while \output is active
[1324]
[1325]
Underfull \vbox (badness 10000) has occurred while \output is active
[1326]
Underfull \vbox (badness 10000) has occurred while \output is active
[1327]
[1328]
[1329]
Underfull \hbox (badness 4036) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1330]
Underfull \hbox (badness 3803) in paragraph at lines 5497--5499
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1331]
[1332]
[1333]
[1334]
Underfull \hbox (badness 1087) in paragraph at lines 5731--5736
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1335]
[1336]
[1337]
[1338]
[1339]
[1340]
[1341]
[1342]
Underfull \hbox (badness 1675) in paragraph at lines 6448--6454
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1343]
[1344]
[1345]
[1346]
Underfull \vbox (badness 10000) has occurred while \output is active
[1347]
[1348]
[1349]
[1350]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1351]
[1352]
[1353]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7236 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7240 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7241 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1354]
Underfull \hbox (badness 2050) in paragraph at lines 7303--7307
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1355]
[1356]
[1357]
Underfull \hbox (badness 1286) in paragraph at lines 7496--7498
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
[1385]
[1386]
[1387]
[1388]
[1389]
[1390]
[1391]
[1392]
[1393]
[1394]
[1395]
[1396]
[1397]
[1398]
[1399]
Underfull \hbox (badness 2197) in paragraph at lines 10545--10548
[]\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi
4/m/sl/10 https : / / johnmchambers . su . domains /

[1400]
Underfull \hbox (badness 1852) in paragraph at lines 10623--10627
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1401]
[1402]
[1403]
[1404]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1405]
[1406]
[1407]
[1408]
[1409]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1410]
[1411]
[1412]
[1413]
[1414]
[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
Underfull \hbox (badness 3386) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1427]
[1428]
[1429]) (./splines-pkg.tex
[1430]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
[1445]
[1446]) (./stats-pkg.tex
Chapter 10.

[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
Underfull \hbox (badness 1412) in paragraph at lines 903--905
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
Underfull \hbox (badness 2503) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798
 []  \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq(
rx[1], rx[2], length.out = 25) }[] 

[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
[1487]
[1488]
[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
Underfull \hbox (badness 2503) in paragraph at lines 3626--3629
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1504]
[1505]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3741.


[1506]
[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
[1524]
Underfull \hbox (badness 3989) in paragraph at lines 4916--4923
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
Underfull \hbox (badness 2556) in paragraph at lines 5581--5584
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1535]
[1536]
[1537]
[1538]
[1539]
[1540]
[1541]
Underfull \hbox (badness 2503) in paragraph at lines 5997--6001
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1542]
[1543]
[1544]
[1545]
[1546]
[1547]
[1548]
[1549]
[1550]
[1551]
[1552]
[1553]
[1554]
Underfull \hbox (badness 7081) in paragraph at lines 6802--6805
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6806--6808
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1555]
[1556]
[1557]
[1558]
[1559]
[1560]
Underfull \vbox (badness 10000) has occurred while \output is active
[1561]
[1562]
[1563]
Underfull \vbox (badness 10000) has occurred while \output is active
[1564]
[1565]
[1566]
[1567]
[1568]
Underfull \hbox (badness 10000) in paragraph at lines 7704--7707
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/
zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the

[1569]
[1570]
[1571]
Underfull \hbox (badness 2635) in paragraph at lines 7848--7851
[]\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T
1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view =

[1572]
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
[1579]
[1580]
[1581]
[1582]
[1583]
Underfull \hbox (badness 1960) in paragraph at lines 8597--8600
[]\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to 
be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which
 case

[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
Underfull \hbox (badness 2626) in paragraph at lines 9439--9442
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1597]
[1598]
Underfull \hbox (badness 2503) in paragraph at lines 9546--9550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1599]
[1600]
[1601]
[1602]
[1603]
[1604]
[1605]
[1606]
[1607]
[1608]
[1609]
Underfull \hbox (badness 1253) in paragraph at lines 10301--10306
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo
r all pa-ram-e-ters:

Underfull \hbox (badness 1337) in paragraph at lines 10306--10309
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1610]
[1611]
[1612]
Underfull \vbox (badness 10000) has occurred while \output is active
[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
[1621]
[1622]
[1623]
[1624]
Underfull \hbox (badness 4518) in paragraph at lines 11250--11255
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1625]
[1626]
[1627]
[1628]
[1629]
Underfull \hbox (badness 2142) in paragraph at lines 11621--11624
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11640--11643
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1630]
Underfull \hbox (badness 1708) in paragraph at lines 11702--11706
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1631]
[1632]
[1633]
Underfull \hbox (badness 1005) in paragraph at lines 11924--11928
[]\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been 
rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean
 dis-tances

[1634]
[1635]
[1636]
Underfull \hbox (badness 1694) in paragraph at lines 12118--12121
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1637]
[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
[1645]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12627 \aliasA{hat}{influence.measures}{hat}
                                             
[1646]
[1647]
Underfull \hbox (badness 1484) in paragraph at lines 12783--12785
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1648]
[1649]
[1650]
[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
Underfull \hbox (badness 10000) in paragraph at lines 13391--13393
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1659]
[1660]
[1661]
[1662]
[1663]
Underfull \hbox (badness 2894) in paragraph at lines 13735--13739
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
Underfull \hbox (badness 1281) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and 
Re-lated Re-gres-sion Meth-

[1676]
Underfull \hbox (badness 4518) in paragraph at lines 14567--14572
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1677]
[1678]
[1679]
[1680]
[1681]
[1682]
[1683]
[1684]
[1685]
[1686]
Underfull \hbox (badness 1596) in paragraph at lines 15205--15208
\T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(<loadings>, ...)[]\T1/ptm/m/n/10 , he
nce, e.g., []\T1/zi4/m/sl/10 cutoff = <frac>[]\T1/ptm/m/n/10 ; ig-nored for

[1687]
Underfull \hbox (badness 4518) in paragraph at lines 15263--15268
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1688]
[1689]
Underfull \hbox (badness 6412) in paragraph at lines 15404--15408
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 15411--15413
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
Underfull \hbox (badness 2503) in paragraph at lines 16503--16507
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1708]
[1709]
Underfull \vbox (badness 3803) has occurred while \output is active
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 10000) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1717]
[1718]
[1719]
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
[1734]
[1735]
[1736]
[1737]
[1738]
[1739]
[1740]
[1741]
[1742]
Underfull \hbox (badness 1158) in paragraph at lines 18695--18698
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1743]
[1744]
Underfull \vbox (badness 3803) has occurred while \output is active
[1745]
Underfull \vbox (badness 10000) has occurred while \output is active
[1746]
Underfull \vbox (badness 10000) has occurred while \output is active
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1377) in paragraph at lines 19758--19763
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19763--19766
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19776--19780
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19776--19780
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19784--19788
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1761]
[1762]
[1763]
Underfull \vbox (badness 10000) has occurred while \output is active
[1764]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1765]
[1766]
[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
Underfull \hbox (badness 1337) in paragraph at lines 20505--20508
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
Underfull \hbox (badness 10000) in paragraph at lines 20985--20991
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1782]
[1783]
[1784]
[1785]
[1786]
[1787]
[1788]
Underfull \hbox (badness 1194) in paragraph at lines 21419--21422
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
Underfull \hbox (badness 2503) in paragraph at lines 21801--21804
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1795]
Underfull \hbox (badness 3919) in paragraph at lines 21828--21830
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1796]
[1797]
[1798]
[1799]
[1800]
Underfull \hbox (badness 1337) in paragraph at lines 22168--22171
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
Underfull \hbox (badness 10000) in paragraph at lines 23168--23174
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1817]
[1818]
[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
[1835]
[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
Underfull \hbox (badness 1337) in paragraph at lines 24658--24664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1842]
[1843]
[1844]
[1845]
[1846]
[1847]
[1848]
[1849]
Underfull \hbox (badness 1436) in paragraph at lines 25147--25150
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

Underfull \hbox (badness 1009) in paragraph at lines 25150--25153
[]\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro
rs when []\T1/zi4/m/sl/10 j <-

[1850]
[1851]
Underfull \hbox (badness 10000) in paragraph at lines 25316--25317
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
Underfull \hbox (badness 1824) in paragraph at lines 26289--26295
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 26289--26295
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

Underfull \hbox (badness 10000) in paragraph at lines 26310--26313
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
[1874]
[1875]
Underfull \vbox (badness 10000) has occurred while \output is active
[1876]
[1877]
Underfull \hbox (badness 2165) in paragraph at lines 26894--26899
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1878]
[1879]
[1880]
Underfull \hbox (badness 1867) in paragraph at lines 27102--27104
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 27118--27122
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1881]
[1882]
[1883]
[1884]
[1885]
[1886]
[1887]
[1888]
[1889]
[1890]
[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
Underfull \vbox (badness 10000) has occurred while \output is active
[1907]
Underfull \hbox (badness 3514) in paragraph at lines 28799--28804
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1908]
[1909]
[1910]
[1911]
[1912]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 29069--29075
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1913]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1914]
[1915]
[1916]
Underfull \hbox (badness 3514) in paragraph at lines 29302--29307
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1917]
[1918]
Underfull \hbox (badness 3514) in paragraph at lines 29389--29394
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1919]
Underfull \hbox (badness 3514) in paragraph at lines 29454--29459
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1920]
[1921]
Underfull \hbox (badness 3514) in paragraph at lines 29548--29553
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1922]
Underfull \hbox (badness 6691) in paragraph at lines 29640--29645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
Underfull \hbox (badness 4024) in paragraph at lines 30135--30138
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
Underfull \hbox (badness 5431) in paragraph at lines 30753--30755
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1941]
[1942]
[1943]
[1944]
Underfull \hbox (badness 5431) in paragraph at lines 30971--30974
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1945]
[1946]
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 31286--31290
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
Underfull \hbox (badness 1127) in paragraph at lines 31428--31431
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1953]
[1954]
[1955]
Underfull \hbox (badness 1616) in paragraph at lines 31646--31649
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1956]
[1957]
[1958]
[1959]
[1960]
[1961]
[1962]
[1963]
[1964]
[1965]
[1966]
[1967]
[1968]
[1969]
[1970]
[1971]
[1972]
[1973]
[1974]
[1975]
Underfull \hbox (badness 3557) in paragraph at lines 32900--32904
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1976]
[1977]
[1978]
Underfull \vbox (badness 10000) has occurred while \output is active
[1979]
[1980]
[1981]
Underfull \hbox (badness 1337) in paragraph at lines 33268--33272
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1982]
[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
[1990]
Underfull \hbox (badness 1337) in paragraph at lines 33816--33820
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1991]
[1992]
[1993]
[1994]
[1995]
[1996]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1997]
[1998]
[1999]
[2000]
[2001]) (./stats4-pkg.tex
[2002]
Chapter 11.

[2003]
[2004]
[2005]
Underfull \vbox (badness 10000) has occurred while \output is active
[2006]
Underfull \vbox (badness 10000) has occurred while \output is active
[2007]
[2008]
[2009]
[2010]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.506 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[2011]
[2012]
[2013]) (./tcltk-pkg.tex
[2014]
Chapter 12.

[2015]
[2016]
[2017]
[2018]
[2019]
[2020]
[2021]
Underfull \vbox (badness 10000) has occurred while \output is active
[2022]
Underfull \vbox (badness 10000) has occurred while \output is active
[2023]
Underfull \hbox (badness 1546) in paragraph at lines 687--694
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[2024]
[2025]
[2026]
[2027]
[2028]
Underfull \vbox (badness 10000) has occurred while \output is active
[2029]
[2030]
[2031]
[2032]
[2033]
[2034]
[2035]
[2036]) (./tools-pkg.tex
Chapter 13.

[2037]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2038]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2039]
[2040]
[2041]
Underfull \hbox (badness 1308) in paragraph at lines 326--339
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 326--339
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2042]
[2043]
Underfull \hbox (badness 3039) in paragraph at lines 429--431
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2044]
Underfull \hbox (badness 1142) in paragraph at lines 501--505
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2045]
[2046]
[2047]
[2048]
[2049]
[2050]
[2051] [2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
Underfull \hbox (badness 1014) in paragraph at lines 1346--1348
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1352--1354
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2059]
Underfull \hbox (badness 10000) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2060]
[2061]
[2062]
[2063]
[2064]
[2065]
Underfull \hbox (badness 10000) in paragraph at lines 1783--1794
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 
, []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR
AN_check_details() []\T1/ptm/m/n/10 and

[2066]
[2067]
Underfull \hbox (badness 4096) in paragraph at lines 1934--1942
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2068]
Underfull \hbox (badness 1082) in paragraph at lines 1944--1946
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2069]
[2070]
[2071]
[2072]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2073]
[2074]
[2075]
[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 3386) in paragraph at lines 2736--2739
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2081]
[2082]
[2083]
Underfull \hbox (badness 4096) in paragraph at lines 2899--2907
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2084]
[2085]
[2086]
[2087]
[2088]
[2089]
[2090]
[2091]
[2092]
[2093]
[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
Underfull \hbox (badness 1424) in paragraph at lines 3933--3935
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2100]
[2101]
[2102]
Underfull \hbox (badness 4792) in paragraph at lines 4106--4107
[]\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in

[2103]
[2104]
[2105]
[2106]
[2107]
[2108]
[2109]
[2110]
[2111]
[2112]
Underfull \hbox (badness 10000) in paragraph at lines 4717--4719
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2113]
[2114]
[2115]
[2116]
[2117]
[2118]
Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047
 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping")    # "a Small Fox is .."
     (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha
nge)% i.e. BUG[] 

[2119]
[2120]
[2121]
Underfull \hbox (badness 1796) in paragraph at lines 5256--5261
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=

[2122]
Underfull \hbox (badness 1838) in paragraph at lines 5342--5348
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 5342--5348
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
Underfull \hbox (badness 2197) in paragraph at lines 5693--5703
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2129]
Underfull \hbox (badness 1571) in paragraph at lines 5768--5772
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2130]
[2131]
[2132]
[2133]) (./utils-pkg.tex
[2134]
Chapter 14.

[2135]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',

[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
Underfull \hbox (badness 10000) in paragraph at lines 727--733
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 727--733
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2146]
[2147]
[2148]
Underfull \hbox (badness 3861) in paragraph at lines 942--947
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2149]
[2150]
[2151]
Underfull \hbox (badness 10000) in paragraph at lines 1146--1148
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2152]
[2153]
[2154]
Underfull \vbox (badness 3803) has occurred while \output is active
[2155]
[2156]
[2157]
[2158]
[2159]
[2160]
[2161]
Underfull \hbox (badness 3919) in paragraph at lines 1755--1758
[]\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer
red from the

Underfull \hbox (badness 1371) in paragraph at lines 1765--1767
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
Underfull \hbox (badness 2057) in paragraph at lines 2387--2389
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2172]
[2173]
Underfull \hbox (badness 2150) in paragraph at lines 2473--2480
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2473--2480
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2174]
[2175]
[2176]
[2177]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2756 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2178]
[2179]
[2180]
[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
[2195]
[2196]
[2197]
[2198]
Underfull \hbox (badness 6842) in paragraph at lines 4074--4079
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2199]
Underfull \hbox (badness 1430) in paragraph at lines 4156--4160
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2200]
Underfull \hbox (badness 1184) in paragraph at lines 4232--4248
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2201]
[2202]
Underfull \hbox (badness 10000) in paragraph at lines 4382--4384
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2203]
[2204]
[2205]
[2206]
[2207]
[2208]
[2209]
[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
[2216]
[2217]
[2218]
[2219]
[2220]
[2221]
[2222]
[2223]
Underfull \hbox (badness 1622) in paragraph at lines 5684--5688
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2224]
[2225]
[2226]
[2227]
[2228]
[2229]
Underfull \hbox (badness 1448) in paragraph at lines 6069--6074
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2230]
[2231]
[2232]
[2233]
[2234]
[2235]
[2236]
[2237]
Underfull \hbox (badness 1371) in paragraph at lines 6629--6631
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2238]
[2239]
Underfull \hbox (badness 1502) in paragraph at lines 6718--6724
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6718--6724
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2240]
[2241]
[2242]
Underfull \hbox (badness 10000) in paragraph at lines 6904--6913
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6904--6913
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2243]
Underfull \hbox (badness 2150) in paragraph at lines 6967--6970
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2244]
[2245]
Underfull \hbox (badness 3118) in paragraph at lines 7105--7107
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2246]
[2247]
Underfull \hbox (badness 1325) in paragraph at lines 7283--7287
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2248]
[2249]
Underfull \hbox (badness 1424) in paragraph at lines 7375--7378
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2250]
Underfull \hbox (badness 3219) in paragraph at lines 7457--7464
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7457--7464
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

Underfull \hbox (badness 1629) in paragraph at lines 7470--7472
[]\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from 
[][]$\T1/zi4/m/it/10 https : / / CRAN .

[2251]
Underfull \hbox (badness 1024) in paragraph at lines 7586--7589
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will

[2252]
Underfull \hbox (badness 10000) in paragraph at lines 7620--7625
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2253]
Underfull \hbox (badness 5133) in paragraph at lines 7685--7689
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2254]
[2255]
[2256]
[2257]
[2258]
[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
Underfull \hbox (badness 10000) in paragraph at lines 8356--8358
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2265]
[2266]
[2267]
[2268]
[2269]
[2270]
[2271]
[2272] [2273]
[2274]
Underfull \hbox (badness 3690) in paragraph at lines 8992--8995
[]\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in
g[][][] for the pack-age

[2275]
[2276]
[2277]
Underfull \hbox (badness 2310) in paragraph at lines 9145--9150
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
[2284]
[2285]
[2286]
Underfull \hbox (badness 1248) in paragraph at lines 9725--9729
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2287]
[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 2600) in paragraph at lines 10024--10027
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2292]
[2293]
[2294]
[2295]
[2296]
[2297]
[2298]
[2299]
[2300]
Underfull \hbox (badness 1097) in paragraph at lines 10662--10665
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2301]
[2302]
Underfull \hbox (badness 3000) in paragraph at lines 10798--10803
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2303]
[2304]
[2305]
[2306]
[2307]
[2308]
[2309]
[2310]
[2311]
Underfull \hbox (badness 2134) in paragraph at lines 11395--11400
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2312]
Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2313]
[2314]
[2315]
[2316]
[2317]
[2318]
[2319]
[2320]
Underfull \hbox (badness 6110) in paragraph at lines 11951--11954
\T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki
pedia . org / w / index . php ? title = Roman _ numerals &

[2321]
[2322]
[2323]
[2324]
[2325]
[2326]
[2327]
Underfull \hbox (badness 4060) in paragraph at lines 12394--12397
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2328]
[2329]
[2330]
[2331]
Underfull \hbox (badness 2150) in paragraph at lines 12673--12675
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /

[2332]
[2333]
Underfull \hbox (badness 5832) in paragraph at lines 12762--12767
[]\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/
it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/
m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc[]\T1/ptm/m/n/10 ,

[2334]
[2335]
Underfull \vbox (badness 3803) has occurred while \output is active
[2336]
[2337]
Underfull \hbox (badness 10000) in paragraph at lines 13038--13046
[]\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/
m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo
c[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13059--13063
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

[2338]
Underfull \hbox (badness 10000) in paragraph at lines 13092--13098
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

Underfull \hbox (badness 2762) in paragraph at lines 13107--13113
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2339]
[2340]
Underfull \hbox (badness 1009) in paragraph at lines 13296--13308
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

[2341]
Underfull \hbox (badness 4779) in paragraph at lines 13366--13368
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]
Underfull \hbox (badness 3780) in paragraph at lines 13821--13827
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2349]
Underfull \hbox (badness 2635) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2350]
[2351]
[2352]
Underfull \hbox (badness 2302) in paragraph at lines 14048--14050
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2353]
[2354]
[2355]
[2356]
[2357]
Underfull \hbox (badness 4441) in paragraph at lines 14347--14352
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/it/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14356--14359
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2358]
[2359]
[2360]
[2361]
[2362]
[2363]
[2364]
Underfull \hbox (badness 2932) in paragraph at lines 14786--14793
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14786--14793
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2365]
[2366]
[2367]
[2368]
[2369]
[2370]
Underfull \hbox (badness 6510) in paragraph at lines 15194--15198
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

Underfull \hbox (badness 10000) in paragraph at lines 15201--15204
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 15201--15204
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2371]
[2372]
[2373]
[2374]
[2375]
[2376]
[2377]
[2378]
[2379]
[2380]
[2381]
Underfull \hbox (badness 10000) in paragraph at lines 15905--15910
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15905--15910
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15911--15913
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

[2382]
Underfull \hbox (badness 10000) in paragraph at lines 15975--15978
[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2383]
[2384]
[2385]
[2386]
[2387]
[2388]
[2389]
[2390]
[2391]
[2392]
[2393]
[2394]
[2395]
[2396]
[2397]
[2398]) (./refman.ind

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]

[2432]

[2433]

[2434]

[2435]

[2436]

[2437]

[2438]

[2439]

[2440]

[2441]

[2442]

[2443]

[2444]

[2445]

[2446]

[2447]

[2448]

[2449]

[2450]

[2451]

[2452]

[2453]

[2454]

[2455]

[2456]

[2457]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10174--10176
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2458]

[2459]

[2460]

[2461]

[2462]

[2463]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11585--11587
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2464]

[2465]

[2466]

[2467]

[2468]

[2469]

[2470]

[2471]

[2472]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13466--13468
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13468--13470
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13470--13472
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 


[2473]

[2474]

[2475]

[2476]

[2477]

[2478]

[2479]

[2480]

[2481]

[2482]) (./refman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix.Rdash.class} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.MethodsList.Rdash.class} has been referenced bu
t does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pipe\\unhbox\040\\voidb@x\040\\unskip\040\040\\
ignorespaces\040operator} has been referenced but does not exist, replaced by a
 fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.xfig} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.defunct} has been referenced but doe
s not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/
helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a
.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2515 pages, 6877554 bytes).
Transcript written on refman.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file refman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./refman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./refman.out) (./refman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./refman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 150--158
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 338--341
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 573--579
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657
 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when  
\TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 
`[] 

[43]
[44]
[45]
[46]
[47]
Underfull \hbox (badness 1721) in paragraph at lines 2977--2981
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[48]
[49]
[50]
[51]
[52]
[53]
[54]
Underfull \hbox (badness 2538) in paragraph at lines 3469--3472
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[55]
[56]
[57]
[58]
[59]
Underfull \vbox (badness 3803) has occurred while \output is active
[60]
[61]
[62]
[63]
[64]
[65]
[66]
[67]
Underfull \hbox (badness 10000) in paragraph at lines 4265--4267
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
[88]
Underfull \hbox (badness 2521) in paragraph at lines 5623--5625
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
[108]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
Underfull \hbox (badness 2253) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn
ection[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 2846) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke
t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class

[118]
[119]
[120]
[121]
Underfull \hbox (badness 2261) in paragraph at lines 7873--7878
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[122]
[123]
[124]
Underfull \vbox (badness 10000) has occurred while \output is active
[125]
[126]
[127]
[128]
[129]
[130]
[131]
[132]
[133]
Underfull \hbox (badness 2096) in paragraph at lines 8618--8622
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[134]
[135]
Underfull \hbox (badness 2351) in paragraph at lines 8734--8737
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[136]
[137]
[138]
[139]
[140]
Underfull \hbox (badness 4479) in paragraph at lines 9051--9062
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[141]
[142]
[143]
[144]
[145]
[146]
Underfull \hbox (badness 2698) in paragraph at lines 9465--9471
[]\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 
mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.
finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n
/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 9492--9504
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9492--9504
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[147]
[148]
[149]
Underfull \hbox (badness 3657) in paragraph at lines 9692--9694
[][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac
-tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , 
[]\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 ,

[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
[158]
[159]
Underfull \hbox (badness 1178) in paragraph at lines 10351--10355
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
[194]
[195]
[196]
Underfull \hbox (badness 2744) in paragraph at lines 12723--12725
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[197]
[198]
[199]
[200]
[201]
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
[227]
[228]
Underfull \hbox (badness 2253) in paragraph at lines 14943--14945
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

[229]
Underfull \hbox (badness 1490) in paragraph at lines 14978--14981
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[230]
Underfull \hbox (badness 1565) in paragraph at lines 15064--15068
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[231]
Underfull \hbox (badness 4927) in paragraph at lines 15115--15117
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[232]
[233]
Underfull \hbox (badness 1466) in paragraph at lines 15266--15269
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[234]
[235]
Underfull \hbox (badness 10000) in paragraph at lines 15397--15401
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15408--15411
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[236]
[237]
[238]
[239]
[240]
Underfull \hbox (badness 3965) in paragraph at lines 15712--15716
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[241]
[242]
[243]
[244]
[245]
[246]
[247]
[248]
Underfull \hbox (badness 5260) in paragraph at lines 16225--16225
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[249]
[250]
[251]
[252]
[253]
Underfull \hbox (badness 4429) in paragraph at lines 16517--16520
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[254]
[255]
Underfull \hbox (badness 10000) in paragraph at lines 16624--16626
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[256]
Underfull \hbox (badness 2035) in paragraph at lines 16697--16701
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[257]
Underfull \vbox (badness 10000) has occurred while \output is active
[258]
[259]
[260]
[261]
[262]
[263]
[264]
[265]
[266]
Underfull \hbox (badness 2452) in paragraph at lines 17323--17327
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17323--17327
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[267]
[268]
[269]
Underfull \hbox (badness 1092) in paragraph at lines 17516--17521
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[270]
[271]
[272]
Underfull \hbox (badness 6741) in paragraph at lines 17769--17773
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[273]
[274]
[275]
[276]
[277]
[278]
[279]
[280]
[281]
[282]
[283]
[284]
Underfull \vbox (badness 10000) has occurred while \output is active
[285]
[286]
[287]
[288]
[289]
[290]
[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 1769) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[296]
[297]
[298]
[299]
[300]
Underfull \hbox (badness 10000) in paragraph at lines 19592--19594
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19598--19607
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[301]
[302]
[303]
[304]
[305]
[306]
[307]
[308]
[309]
Underfull \hbox (badness 1442) in paragraph at lines 20210--20212
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[310]
[311]
Underfull \hbox (badness 2452) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[312]
[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 1248) in paragraph at lines 20704--20707
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[318]
[319]
[320]
[321]
[322]
Underfull \hbox (badness 4739) in paragraph at lines 20975--20977
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[323]
[324]
[325]
[326]
[327]
Underfull \vbox (badness 3803) has occurred while \output is active
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
[337]
[338]
[339]
[340]
[341]
Underfull \hbox (badness 2469) in paragraph at lines 22168--22173
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[342]
[343]
Underfull \hbox (badness 1675) in paragraph at lines 22255--22264
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 22265--22278
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 22313--22316
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 22313--22316
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[344]
[345]
Underfull \hbox (badness 1014) in paragraph at lines 22448--22453
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
[354]
[355]
[356]
[357]
[358]
Underfull \hbox (badness 1264) in paragraph at lines 23309--23317
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

[359]
Underfull \hbox (badness 4441) in paragraph at lines 23344--23347
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[360]
[361]
[362]
[363]
[364]
[365]
[366]
[367]
[368]
[369]
[370]
[371]
Underfull \hbox (badness 5231) in paragraph at lines 24169--24171
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
[384]
[385]
[386]
[387]
[388]
[389]
[390]
Underfull \hbox (badness 6380) in paragraph at lines 25335--25341
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 25335--25341
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[391]
[392]
[393]
[394]
[395]
[396]
[397]
[398]
Underfull \hbox (badness 2790) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[399]
[400]
[401]
[402]
[403]
Underfull \hbox (badness 1194) in paragraph at lines 26180--26183
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[404]
[405]
[406]
Underfull \hbox (badness 2368) in paragraph at lines 26390--26396
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[407]
[408]
[409]
[410]
[411]
[412]
Underfull \hbox (badness 10000) in paragraph at lines 26783--26786
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[413]
[414]
[415]
[416]
[417]
[418]
[419]
[420]
[421]
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27435--27437
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[423]
[424]
[425]
[426]
[427]
[428]
[429]
Underfull \hbox (badness 2443) in paragraph at lines 27928--27936
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[430]
[431]
[432]
[433]
[434]
[435]
[436]
Underfull \hbox (badness 1881) in paragraph at lines 28360--28363
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 28385--28387
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[437]
[438]
Underfull \hbox (badness 2142) in paragraph at lines 28532--28536
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

[439]
Underfull \hbox (badness 1968) in paragraph at lines 28589--28594
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[440]
[441]
[442]
Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28910--28913
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

[443]
Underfull \hbox (badness 2689) in paragraph at lines 28936--28938
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28984--28989
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 29002--29005
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[444]
[445]
[446]
[447]
[448]
[449]
Underfull \hbox (badness 10000) in paragraph at lines 29420--29424
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[450]
[451]
[452]
Underfull \hbox (badness 10000) in paragraph at lines 29569--29572
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[453]
Underfull \hbox (badness 7925) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29651--29655
[]\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is 
al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]
\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29656--29665
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s,

[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
[463]
[464]
[465]
[466]
[467]
[468]
[469]
Underfull \hbox (badness 2726) in paragraph at lines 30692--30695
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
[482]
[483]
[484]
[485]
[486]
[487]
[488]
Underfull \vbox (badness 3803) has occurred while \output is active
[489]
[490]
[491]
[492]
[493]
[494]
[495]
[496]
[497]
Underfull \hbox (badness 1533) in paragraph at lines 32526--32529
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[498]
[499]
[500]
Underfull \hbox (badness 1163) in paragraph at lines 32698--32709
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[501]
[502]
[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
[520]
[521]
[522]
[523]
[524]
[525]
[526]
Underfull \hbox (badness 10000) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 34403--34405
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 34406--34410
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[527]
[528]
Underfull \vbox (badness 10000) has occurred while \output is active
[529]
[530]
[531]
[532]
[533]
[534]
[535]
[536]
Underfull \hbox (badness 1655) in paragraph at lines 35014--35016
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
[549]
[550]
[551]
[552]
[553]
[554]
[555]
Underfull \hbox (badness 2261) in paragraph at lines 36229--36234
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
[565]
[566]
[567]
[568]
[569]
[570]
[571]
[572]
Underfull \hbox (badness 3668) in paragraph at lines 37332--37336
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[573]
Underfull \hbox (badness 10000) in paragraph at lines 37423--37434
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
[591]
[592]
[593]
Underfull \vbox (badness 3803) has occurred while \output is active
[594]
[595]
[596]
[597]
[598]
[599]
Underfull \hbox (badness 10000) in paragraph at lines 39086--39088
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[600]
[601]
[602]
[603]
[604]
[605]
Underfull \hbox (badness 2913) in paragraph at lines 39504--39508
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[606]
[607]
[608]
[609]
Underfull \hbox (badness 1072) in paragraph at lines 39755--39759
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 39760--39764
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

[610]
Underfull \hbox (badness 3009) in paragraph at lines 39815--39822
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[611]
[612]
[613]
Underfull \hbox (badness 2644) in paragraph at lines 40050--40054
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
[630]
[631]
[632]
[633]
[634]
[635]
[636]
[637]
[638]
Underfull \hbox (badness 4144) in paragraph at lines 41632--41640
[]\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][
][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary
.data.frame[]\T1/ptm/m/n/10 ). In

Underfull \hbox (badness 1158) in paragraph at lines 41642--41644
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[639]
[640]
[641]
[642]
[643]
[644]
[645] [646]
[647]
[648]
[649]
Underfull \hbox (badness 1137) in paragraph at lines 42291--42297
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 42309--42314
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[650]
[651]
Underfull \hbox (badness 1616) in paragraph at lines 42432--42437
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[652]
[653]
[654]
[655]
Underfull \vbox (badness 3803) has occurred while \output is active
[656]
[657]
[658]
[659]
[660]
Underfull \hbox (badness 1472) in paragraph at lines 42980--42983
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[661]
[662]
[663]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 43192.


[664]
[665]
[666]
[667]
[668]
[669]
[670]
[671]
[672]
[673]
[674]
[675]
Underfull \hbox (badness 10000) in paragraph at lines 43937--43941
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
[684]
[685]
[686]
[687]
[688]
[689]
[690]
[691]
[692]
[693]
Underfull \hbox (badness 10000) in paragraph at lines 45135--45138
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[694]
[695]
[696]
[697]
[698]
[699]
Underfull \vbox (badness 10000) has occurred while \output is active
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
Underfull \hbox (badness 1990) in paragraph at lines 46056--46064
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 46056--46064
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
[720]
[721]
[722]
[723]
[724]
[725]
[726]
[727]
[728]
[729]
Underfull \hbox (badness 1014) in paragraph at lines 47504--47507
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[730]
[731]
Underfull \hbox (badness 2401) in paragraph at lines 47638--47642
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[732]
[733]
Underfull \hbox (badness 3492) in paragraph at lines 47765--47767
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[734]
[735]
Underfull \hbox (badness 2111) in paragraph at lines 47851--47856
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[736]
[737]
[738]
[739]
[740]
[741]
[742]
[743]
[744]
[745]
Underfull \hbox (badness 5417) in paragraph at lines 48517--48521
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[746]
Underfull \hbox (badness 10000) in paragraph at lines 48578--48582
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[747]) (./compiler-pkg.tex
[748]
Chapter 2.

[749]
[750]
[751]
[752]) (./datasets-pkg.tex
Chapter 3.

[753]
Underfull \hbox (badness 1199) in paragraph at lines 55--59
[]\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e
ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN

[754]
[755]
[756]
[757] [758]
[759]
[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]
[774]
[775]
[776]
[777]
[778]
[779]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704
 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co
l = adjustcolor("thistle", 1/3))[] 

[780]
[781]
[782]
[783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[817]
[818]
[819]
[820]
Underfull \hbox (badness 10000) in paragraph at lines 4210--4216
[]\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been
 avail-able at

[821]
[822]
[823]
[824]
[825]
[826]
[827]
[828]
[829]
[830]
[831]
[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]) (./grDevices-pkg.tex
Chapter 4.

[841]
[842]
[843]
[844]
[845]
Underfull \hbox (badness 2221) in paragraph at lines 284--288
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 299--304
[]\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1
0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1
0 in

[846]
[847]
[848]
[849]
[850]
[851]
[852]
[853]
[854]
[855]
Underfull \hbox (badness 1424) in paragraph at lines 925--927
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[856]
Underfull \vbox (badness 3803) has occurred while \output is active
[857]
[858]
[859]
[860]
Underfull \hbox (badness 5175) in paragraph at lines 1253--1255
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[861]
[862]
Underfull \hbox (badness 2512) in paragraph at lines 1372--1374
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[863]
[864]
[865]
[866]
[867]
Underfull \hbox (badness 1490) in paragraph at lines 1672--1677
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1685--1689
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[868]
[869]
[870]
[871]
[872]
[873]
[874]
Underfull \hbox (badness 1325) in paragraph at lines 2100--2110
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[875]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2214
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[876]
[877]
[878]
Underfull \hbox (badness 6758) in paragraph at lines 2400--2403
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[879]
[880]
[881]
[882]
[883]
[884]
Underfull \hbox (badness 1694) in paragraph at lines 2759--2762
[]\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T
1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to

[885]
[886]
[887]
[888]
[889]
[890]
Underfull \hbox (badness 10000) in paragraph at lines 3171--3172


[891]
[892]
[893]
[894]
[895]
[896]
[897]
[898]
[899]
[900]
[901]
[902]
Underfull \vbox (badness 3803) has occurred while \output is active
[903]
[904]
[905]
Underfull \hbox (badness 1484) in paragraph at lines 4137--4140
\T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki
pedia . org / w / index . php ? title = HCL _ color _ space &

[906]
Underfull \vbox (badness 10000) has occurred while \output is active
[907]
[908]
[909]
[910]
Underfull \hbox (badness 1418) in paragraph at lines 4463--4470
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[911]
[912]
[913]
[914]
Underfull \hbox (badness 1152) in paragraph at lines 4750--4757
[]\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col
ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 ,

[915]
[916]
[917]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4933 \aliasA{symbol}{plotmath}{symbol}
                                         [918] [919]
[920]
[921]
Underfull \vbox (badness 3803) has occurred while \output is active
[922]
[923]
Underfull \hbox (badness 1584) in paragraph at lines 5325--5327
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5329--5336
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[924]
[925]
[926]
[927]
Underfull \hbox (badness 1377) in paragraph at lines 5631--5636
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[928]
[929]
Underfull \hbox (badness 1377) in paragraph at lines 5735--5740
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[930]
Underfull \hbox (badness 7344) in paragraph at lines 5804--5806
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[931]
[932]
Underfull \hbox (badness 2035) in paragraph at lines 5944--5953
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[933]
Underfull \hbox (badness 10000) in paragraph at lines 6010--6015
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[934]
[935]
[936]
Underfull \hbox (badness 1546) in paragraph at lines 6151--6159
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[937]
[938]
[939]
[940]
[941]
[942]
Underfull \hbox (badness 3343) in paragraph at lines 6595--6598
[]\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla
y-ing the Graph-ics En-

Underfull \hbox (badness 7740) in paragraph at lines 6595--6598
\T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech 
. wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 /

[943]
[944]
Underfull \hbox (badness 10000) in paragraph at lines 6699--6702
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[945]
[946]
[947]
[948]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[949]
[950]
[951]
[952]
[953]
[954]
[955]
[956]
[957]
[958]
Underfull \hbox (badness 1189) in paragraph at lines 7565--7567
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[959]
Underfull \hbox (badness 10000) in paragraph at lines 7670--7672
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
[968]) (./graphics-pkg.tex
Chapter 5.

[969]
[970]
[971]
[972]
[973]
[974]
[975]
[976]
[977]
[978]
[979]
Underfull \vbox (badness 3803) has occurred while \output is active
[980]
[981]
[982]
[983]
[984]
[985]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[986]
Underfull \vbox (badness 10000) has occurred while \output is active
[987]
[988]
[989]
[990]
[991]
[992]
Underfull \hbox (badness 4634) in paragraph at lines 1459--1462
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[993]
[994]
[995]
[996]
[997]
[998]
[999]
[1000]
[1001]
Underfull \vbox (badness 3803) has occurred while \output is active
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
Underfull \hbox (badness 1728) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[1009]
[1010]
Underfull \hbox (badness 1009) in paragraph at lines 2555--2562
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
[1021]
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \vbox (badness 10000) has occurred while \output is active
[1035]
[1036]
[1037]
[1038]
[1039]
[1040]
Underfull \vbox (badness 3803) has occurred while \output is active
[1041]
[1042]
[1043]
[1044]
[1045]
[1046]
[1047]
Underfull \hbox (badness 3229) in paragraph at lines 4852--4857
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1048]
[1049]
[1050]
[1051]
[1052]
Underfull \hbox (badness 1107) in paragraph at lines 5352--5358
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1053]
[1054]
Underfull \hbox (badness 10000) in paragraph at lines 5481--5484


[1055 </build/r-base-4.6.0/library/graphics/help/figures/mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5542--5544


Underfull \vbox (badness 10000) has occurred while \output is active
[1056]
[1057 </build/r-base-4.6.0/library/graphics/help/figures/oma.pdf>]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6231 \aliasA{plot}{plot.default}{plot}
                                        
[1067]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1
0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are

Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its
 are com-puted from

[1068]
[1069]
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168
[][] 

[1082 </build/r-base-4.6.0/library/graphics/help/figures/pch.pdf>]
[1083]
Underfull \vbox (badness 10000) has occurred while \output is active
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
[1103]
[1104]
[1105]
[1106]
[1107]
[1108]
[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
Underfull \hbox (badness 4954) in paragraph at lines 9309--9311
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1117]
[1118]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
[1119]
[1120]
[1121]
[1122]) (./grid-pkg.tex
Chapter 6.

[1123]
[1124]
[1125]
[1126]
[1127]
[1128]
[1129]
[1130]
[1131]
Underfull \hbox (badness 2680) in paragraph at lines 552--555
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1132]
[1133]
[1134]
[1135]
[1136] [1137]
[1138]
[1139]
[1140]
[1141]
[1142]
Underfull \hbox (badness 4279) in paragraph at lines 1191--1200
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
Underfull \hbox (badness 10000) in paragraph at lines 3106--3108
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1175]
[1176]
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \vbox (badness 10000) has occurred while \output is active
[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
[1204]
Underfull \hbox (badness 1067) in paragraph at lines 4845--4848
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1205]
[1206]
[1207]
[1208]
[1209]
[1210]
Underfull \hbox (badness 7256) in paragraph at lines 5196--5198
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
Underfull \hbox (badness 2142) in paragraph at lines 5652--5656
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1218]
[1219]
Underfull \hbox (badness 4699) in paragraph at lines 5734--5739
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]
[1238]
[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
[1247]
[1248]
[1249]
[1250]
[1251]) (./methods-pkg.tex
[1252]
Chapter 7.

[1253]
[1254]
[1255]
[1256]
[1257]
[1258]
[1259]
[1260]
Underfull \vbox (badness 3803) has occurred while \output is active
[1261]
Underfull \vbox (badness 10000) has occurred while \output is active
[1262]
[1263]
[1264]
[1265]
[1266]
[1267]
[1268]
[1269]
[1270]
[1271]
Underfull \hbox (badness 2237) in paragraph at lines 1393--1395
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1272]
[1273]
[1274]
[1275]
[1276]
[1277]
[1278]
[1279]
[1280]
Underfull \hbox (badness 10000) in paragraph at lines 1995--2000
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1995--2000
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1281]
[1282]
[1283]
Underfull \hbox (badness 2213) in paragraph at lines 2227--2232
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1284]
[1285]
[1286]
[1287]
[1288]
Underfull \hbox (badness 10000) in paragraph at lines 2592--2595
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1289]
[1290]
Underfull \hbox (badness 1132) in paragraph at lines 2732--2736
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1291]
Underfull \hbox (badness 1033) in paragraph at lines 2768--2773
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1292]
[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
Underfull \hbox (badness 1102) in paragraph at lines 3331--3333
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1299]
[1300]
[1301]
[1302]
[1303]
[1304]
Underfull \hbox (badness 10000) in paragraph at lines 3668--3677
[]\T1/ptm/m/n/10 The

[1305]
Underfull \hbox (badness 10000) in paragraph at lines 3788--3789
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1306]
Underfull \hbox (badness 10000) in paragraph at lines 3872--3873
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
[1313]
[1314]
[1315]
[1316]
Underfull \hbox (badness 1769) in paragraph at lines 4515--4521
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4515--4521
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1317]
[1318]
[1319]
Underfull \vbox (badness 5681) has occurred while \output is active
[1320]
[1321]
[1322]
[1323]
Underfull \vbox (badness 1681) has occurred while \output is active
[1324]
[1325]
Underfull \vbox (badness 10000) has occurred while \output is active
[1326]
Underfull \vbox (badness 10000) has occurred while \output is active
[1327]
[1328]
[1329]
Underfull \hbox (badness 4036) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1330]
Underfull \hbox (badness 3803) in paragraph at lines 5497--5499
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1331]
[1332]
[1333]
[1334]
Underfull \hbox (badness 1087) in paragraph at lines 5731--5736
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1335]
[1336]
[1337]
[1338]
[1339]
[1340]
[1341]
[1342]
Underfull \hbox (badness 1675) in paragraph at lines 6448--6454
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1343]
[1344]
[1345]
[1346]
Underfull \vbox (badness 10000) has occurred while \output is active
[1347]
[1348]
[1349]
[1350]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1351]
[1352]
[1353]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7236 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7240 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7241 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1354]
Underfull \hbox (badness 2050) in paragraph at lines 7303--7307
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1355]
[1356]
[1357]
Underfull \hbox (badness 1286) in paragraph at lines 7496--7498
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
[1385]
[1386]
[1387]
[1388]
[1389]
[1390]
[1391]
[1392]
[1393]
[1394]
[1395]
[1396]
[1397]
[1398]
[1399]
Underfull \hbox (badness 2197) in paragraph at lines 10545--10548
[]\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi
4/m/sl/10 https : / / johnmchambers . su . domains /

[1400]
Underfull \hbox (badness 1852) in paragraph at lines 10623--10627
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1401]
[1402]
[1403]
[1404]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1405]
[1406]
[1407]
[1408]
[1409]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1410]
[1411]
[1412]
[1413]
[1414]
[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
Underfull \hbox (badness 3386) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1427]
[1428]
[1429]) (./splines-pkg.tex
[1430]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
[1445]
[1446]) (./stats-pkg.tex
Chapter 10.

[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
Underfull \hbox (badness 1412) in paragraph at lines 903--905
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
Underfull \hbox (badness 2503) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798
 []  \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq(
rx[1], rx[2], length.out = 25) }[] 

[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
[1487]
[1488]
[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
Underfull \hbox (badness 2503) in paragraph at lines 3626--3629
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1504]
[1505]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3741.


[1506]
[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
[1524]
Underfull \hbox (badness 3989) in paragraph at lines 4916--4923
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
Underfull \hbox (badness 2556) in paragraph at lines 5581--5584
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1535]
[1536]
[1537]
[1538]
[1539]
[1540]
[1541]
Underfull \hbox (badness 2503) in paragraph at lines 5997--6001
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1542]
[1543]
[1544]
[1545]
[1546]
[1547]
[1548]
[1549]
[1550]
[1551]
[1552]
[1553]
[1554]
Underfull \hbox (badness 7081) in paragraph at lines 6802--6805
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6806--6808
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1555]
[1556]
[1557]
[1558]
[1559]
[1560]
Underfull \vbox (badness 10000) has occurred while \output is active
[1561]
[1562]
[1563]
Underfull \vbox (badness 10000) has occurred while \output is active
[1564]
[1565]
[1566]
[1567]
[1568]
Underfull \hbox (badness 10000) in paragraph at lines 7704--7707
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/
zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the

[1569]
[1570]
[1571]
Underfull \hbox (badness 2635) in paragraph at lines 7848--7851
[]\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T
1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view =

[1572]
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
[1579]
[1580]
[1581]
[1582]
[1583]
Underfull \hbox (badness 1960) in paragraph at lines 8597--8600
[]\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to 
be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which
 case

[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
Underfull \hbox (badness 2626) in paragraph at lines 9439--9442
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1597]
[1598]
Underfull \hbox (badness 2503) in paragraph at lines 9546--9550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1599]
[1600]
[1601]
[1602]
[1603]
[1604]
[1605]
[1606]
[1607]
[1608]
[1609]
Underfull \hbox (badness 1253) in paragraph at lines 10301--10306
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo
r all pa-ram-e-ters:

Underfull \hbox (badness 1337) in paragraph at lines 10306--10309
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1610]
[1611]
[1612]
Underfull \vbox (badness 10000) has occurred while \output is active
[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
[1621]
[1622]
[1623]
[1624]
Underfull \hbox (badness 4518) in paragraph at lines 11250--11255
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1625]
[1626]
[1627]
[1628]
[1629]
Underfull \hbox (badness 2142) in paragraph at lines 11621--11624
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11640--11643
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1630]
Underfull \hbox (badness 1708) in paragraph at lines 11702--11706
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1631]
[1632]
[1633]
Underfull \hbox (badness 1005) in paragraph at lines 11924--11928
[]\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been 
rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean
 dis-tances

[1634]
[1635]
[1636]
Underfull \hbox (badness 1694) in paragraph at lines 12118--12121
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1637]
[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
[1645]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12627 \aliasA{hat}{influence.measures}{hat}
                                             
[1646]
[1647]
Underfull \hbox (badness 1484) in paragraph at lines 12783--12785
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1648]
[1649]
[1650]
[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
Underfull \hbox (badness 10000) in paragraph at lines 13391--13393
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1659]
[1660]
[1661]
[1662]
[1663]
Underfull \hbox (badness 2894) in paragraph at lines 13735--13739
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
Underfull \hbox (badness 1281) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and 
Re-lated Re-gres-sion Meth-

[1676]
Underfull \hbox (badness 4518) in paragraph at lines 14567--14572
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1677]
[1678]
[1679]
[1680]
[1681]
[1682]
[1683]
[1684]
[1685]
[1686]
Underfull \hbox (badness 1596) in paragraph at lines 15205--15208
\T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(<loadings>, ...)[]\T1/ptm/m/n/10 , he
nce, e.g., []\T1/zi4/m/sl/10 cutoff = <frac>[]\T1/ptm/m/n/10 ; ig-nored for

[1687]
Underfull \hbox (badness 4518) in paragraph at lines 15263--15268
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1688]
[1689]
Underfull \hbox (badness 6412) in paragraph at lines 15404--15408
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 15411--15413
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
Underfull \hbox (badness 2503) in paragraph at lines 16503--16507
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1708]
[1709]
Underfull \vbox (badness 3803) has occurred while \output is active
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 10000) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1717]
[1718]
[1719]
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
[1734]
[1735]
[1736]
[1737]
[1738]
[1739]
[1740]
[1741]
[1742]
Underfull \hbox (badness 1158) in paragraph at lines 18695--18698
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1743]
[1744]
Underfull \vbox (badness 3803) has occurred while \output is active
[1745]
Underfull \vbox (badness 10000) has occurred while \output is active
[1746]
Underfull \vbox (badness 10000) has occurred while \output is active
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1377) in paragraph at lines 19758--19763
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19763--19766
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19776--19780
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19776--19780
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19784--19788
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1761]
[1762]
[1763]
Underfull \vbox (badness 10000) has occurred while \output is active
[1764]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1765]
[1766]
[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
Underfull \hbox (badness 1337) in paragraph at lines 20505--20508
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
Underfull \hbox (badness 10000) in paragraph at lines 20985--20991
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1782]
[1783]
[1784]
[1785]
[1786]
[1787]
[1788]
Underfull \hbox (badness 1194) in paragraph at lines 21419--21422
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
Underfull \hbox (badness 2503) in paragraph at lines 21801--21804
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1795]
Underfull \hbox (badness 3919) in paragraph at lines 21828--21830
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1796]
[1797]
[1798]
[1799]
[1800]
Underfull \hbox (badness 1337) in paragraph at lines 22168--22171
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
Underfull \hbox (badness 10000) in paragraph at lines 23168--23174
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1817]
[1818]
[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
[1835]
[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
Underfull \hbox (badness 1337) in paragraph at lines 24658--24664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1842]
[1843]
[1844]
[1845]
[1846]
[1847]
[1848]
[1849]
Underfull \hbox (badness 1436) in paragraph at lines 25147--25150
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

Underfull \hbox (badness 1009) in paragraph at lines 25150--25153
[]\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro
rs when []\T1/zi4/m/sl/10 j <-

[1850]
[1851]
Underfull \hbox (badness 10000) in paragraph at lines 25316--25317
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
Underfull \hbox (badness 1824) in paragraph at lines 26289--26295
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 26289--26295
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

Underfull \hbox (badness 10000) in paragraph at lines 26310--26313
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
[1874]
[1875]
Underfull \vbox (badness 10000) has occurred while \output is active
[1876]
[1877]
Underfull \hbox (badness 2165) in paragraph at lines 26894--26899
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1878]
[1879]
[1880]
Underfull \hbox (badness 1867) in paragraph at lines 27102--27104
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 27118--27122
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1881]
[1882]
[1883]
[1884]
[1885]
[1886]
[1887]
[1888]
[1889]
[1890]
[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
Underfull \vbox (badness 10000) has occurred while \output is active
[1907]
Underfull \hbox (badness 3514) in paragraph at lines 28799--28804
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1908]
[1909]
[1910]
[1911]
[1912]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 29069--29075
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1913]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1914]
[1915]
[1916]
Underfull \hbox (badness 3514) in paragraph at lines 29302--29307
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1917]
[1918]
Underfull \hbox (badness 3514) in paragraph at lines 29389--29394
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1919]
Underfull \hbox (badness 3514) in paragraph at lines 29454--29459
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1920]
[1921]
Underfull \hbox (badness 3514) in paragraph at lines 29548--29553
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1922]
Underfull \hbox (badness 6691) in paragraph at lines 29640--29645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
Underfull \hbox (badness 4024) in paragraph at lines 30135--30138
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
Underfull \hbox (badness 5431) in paragraph at lines 30753--30755
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1941]
[1942]
[1943]
[1944]
Underfull \hbox (badness 5431) in paragraph at lines 30971--30974
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1945]
[1946]
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 31286--31290
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
Underfull \hbox (badness 1127) in paragraph at lines 31428--31431
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1953]
[1954]
[1955]
Underfull \hbox (badness 1616) in paragraph at lines 31646--31649
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1956]
[1957]
[1958]
[1959]
[1960]
[1961]
[1962]
[1963]
[1964]
[1965]
[1966]
[1967]
[1968]
[1969]
[1970]
[1971]
[1972]
[1973]
[1974]
[1975]
Underfull \hbox (badness 3557) in paragraph at lines 32900--32904
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1976]
[1977]
[1978]
Underfull \vbox (badness 10000) has occurred while \output is active
[1979]
[1980]
[1981]
Underfull \hbox (badness 1337) in paragraph at lines 33268--33272
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1982]
[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
[1990]
Underfull \hbox (badness 1337) in paragraph at lines 33816--33820
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1991]
[1992]
[1993]
[1994]
[1995]
[1996]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1997]
[1998]
[1999]
[2000]
[2001]) (./stats4-pkg.tex
[2002]
Chapter 11.

[2003]
[2004]
[2005]
Underfull \vbox (badness 10000) has occurred while \output is active
[2006]
Underfull \vbox (badness 10000) has occurred while \output is active
[2007]
[2008]
[2009]
[2010]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.506 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[2011]
[2012]
[2013]) (./tcltk-pkg.tex
[2014]
Chapter 12.

[2015]
[2016]
[2017]
[2018]
[2019]
[2020]
[2021]
Underfull \vbox (badness 10000) has occurred while \output is active
[2022]
Underfull \vbox (badness 10000) has occurred while \output is active
[2023]
Underfull \hbox (badness 1546) in paragraph at lines 687--694
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[2024]
[2025]
[2026]
[2027]
[2028]
Underfull \vbox (badness 10000) has occurred while \output is active
[2029]
[2030]
[2031]
[2032]
[2033]
[2034]
[2035]
[2036]) (./tools-pkg.tex
Chapter 13.

[2037]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2038]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2039]
[2040]
[2041]
Underfull \hbox (badness 1308) in paragraph at lines 326--339
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 326--339
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2042]
[2043]
Underfull \hbox (badness 3039) in paragraph at lines 429--431
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2044]
Underfull \hbox (badness 1142) in paragraph at lines 501--505
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2045]
[2046]
[2047]
[2048]
[2049]
[2050]
[2051] [2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
Underfull \hbox (badness 1014) in paragraph at lines 1346--1348
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1352--1354
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2059]
Underfull \hbox (badness 10000) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2060]
[2061]
[2062]
[2063]
[2064]
[2065]
Underfull \hbox (badness 10000) in paragraph at lines 1783--1794
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 
, []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR
AN_check_details() []\T1/ptm/m/n/10 and

[2066]
[2067]
Underfull \hbox (badness 4096) in paragraph at lines 1934--1942
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2068]
Underfull \hbox (badness 1082) in paragraph at lines 1944--1946
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2069]
[2070]
[2071]
[2072]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2073]
[2074]
[2075]
[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 3386) in paragraph at lines 2736--2739
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2081]
[2082]
[2083]
Underfull \hbox (badness 4096) in paragraph at lines 2899--2907
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2084]
[2085]
[2086]
[2087]
[2088]
[2089]
[2090]
[2091]
[2092]
[2093]
[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
Underfull \hbox (badness 1424) in paragraph at lines 3933--3935
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2100]
[2101]
[2102]
Underfull \hbox (badness 4792) in paragraph at lines 4106--4107
[]\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in

[2103]
[2104]
[2105]
[2106]
[2107]
[2108]
[2109]
[2110]
[2111]
[2112]
Underfull \hbox (badness 10000) in paragraph at lines 4717--4719
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2113]
[2114]
[2115]
[2116]
[2117]
[2118]
Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047
 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping")    # "a Small Fox is .."
     (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha
nge)% i.e. BUG[] 

[2119]
[2120]
[2121]
Underfull \hbox (badness 1796) in paragraph at lines 5256--5261
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=

[2122]
Underfull \hbox (badness 1838) in paragraph at lines 5342--5348
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 5342--5348
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
Underfull \hbox (badness 2197) in paragraph at lines 5693--5703
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2129]
Underfull \hbox (badness 1571) in paragraph at lines 5768--5772
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2130]
[2131]
[2132]
[2133]) (./utils-pkg.tex
[2134]
Chapter 14.

[2135]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',

[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
Underfull \hbox (badness 10000) in paragraph at lines 727--733
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 727--733
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2146]
[2147]
[2148]
Underfull \hbox (badness 3861) in paragraph at lines 942--947
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2149]
[2150]
[2151]
Underfull \hbox (badness 10000) in paragraph at lines 1146--1148
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2152]
[2153]
[2154]
Underfull \vbox (badness 3803) has occurred while \output is active
[2155]
[2156]
[2157]
[2158]
[2159]
[2160]
[2161]
Underfull \hbox (badness 3919) in paragraph at lines 1755--1758
[]\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer
red from the

Underfull \hbox (badness 1371) in paragraph at lines 1765--1767
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
Underfull \hbox (badness 2057) in paragraph at lines 2387--2389
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2172]
[2173]
Underfull \hbox (badness 2150) in paragraph at lines 2473--2480
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2473--2480
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2174]
[2175]
[2176]
[2177]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2756 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2178]
[2179]
[2180]
[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
[2195]
[2196]
[2197]
[2198]
Underfull \hbox (badness 6842) in paragraph at lines 4074--4079
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2199]
Underfull \hbox (badness 1430) in paragraph at lines 4156--4160
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2200]
Underfull \hbox (badness 1184) in paragraph at lines 4232--4248
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2201]
[2202]
Underfull \hbox (badness 10000) in paragraph at lines 4382--4384
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2203]
[2204]
[2205]
[2206]
[2207]
[2208]
[2209]
[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
[2216]
[2217]
[2218]
[2219]
[2220]
[2221]
[2222]
[2223]
Underfull \hbox (badness 1622) in paragraph at lines 5684--5688
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2224]
[2225]
[2226]
[2227]
[2228]
[2229]
Underfull \hbox (badness 1448) in paragraph at lines 6069--6074
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2230]
[2231]
[2232]
[2233]
[2234]
[2235]
[2236]
[2237]
Underfull \hbox (badness 1371) in paragraph at lines 6629--6631
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2238]
[2239]
Underfull \hbox (badness 1502) in paragraph at lines 6718--6724
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6718--6724
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2240]
[2241]
[2242]
Underfull \hbox (badness 10000) in paragraph at lines 6904--6913
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6904--6913
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2243]
Underfull \hbox (badness 2150) in paragraph at lines 6967--6970
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2244]
[2245]
Underfull \hbox (badness 3118) in paragraph at lines 7105--7107
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2246]
[2247]
Underfull \hbox (badness 1325) in paragraph at lines 7283--7287
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2248]
[2249]
Underfull \hbox (badness 1424) in paragraph at lines 7375--7378
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2250]
Underfull \hbox (badness 3219) in paragraph at lines 7457--7464
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7457--7464
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

Underfull \hbox (badness 1629) in paragraph at lines 7470--7472
[]\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from 
[][]$\T1/zi4/m/it/10 https : / / CRAN .

[2251]
Underfull \hbox (badness 1024) in paragraph at lines 7586--7589
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will

[2252]
Underfull \hbox (badness 10000) in paragraph at lines 7620--7625
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2253]
Underfull \hbox (badness 5133) in paragraph at lines 7685--7689
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2254]
[2255]
[2256]
[2257]
[2258]
[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
Underfull \hbox (badness 10000) in paragraph at lines 8356--8358
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2265]
[2266]
[2267]
[2268]
[2269]
[2270]
[2271]
[2272] [2273]
[2274]
Underfull \hbox (badness 3690) in paragraph at lines 8992--8995
[]\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in
g[][][] for the pack-age

[2275]
[2276]
[2277]
Underfull \hbox (badness 2310) in paragraph at lines 9145--9150
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
[2284]
[2285]
[2286]
Underfull \hbox (badness 1248) in paragraph at lines 9725--9729
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2287]
[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 2600) in paragraph at lines 10024--10027
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2292]
[2293]
[2294]
[2295]
[2296]
[2297]
[2298]
[2299]
[2300]
Underfull \hbox (badness 1097) in paragraph at lines 10662--10665
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2301]
[2302]
Underfull \hbox (badness 3000) in paragraph at lines 10798--10803
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2303]
[2304]
[2305]
[2306]
[2307]
[2308]
[2309]
[2310]
[2311]
Underfull \hbox (badness 2134) in paragraph at lines 11395--11400
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2312]
Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2313]
[2314]
[2315]
[2316]
[2317]
[2318]
[2319]
[2320]
Underfull \hbox (badness 6110) in paragraph at lines 11951--11954
\T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki
pedia . org / w / index . php ? title = Roman _ numerals &

[2321]
[2322]
[2323]
[2324]
[2325]
[2326]
[2327]
Underfull \hbox (badness 4060) in paragraph at lines 12394--12397
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2328]
[2329]
[2330]
[2331]
Underfull \hbox (badness 2150) in paragraph at lines 12673--12675
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /

[2332]
[2333]
Underfull \hbox (badness 5832) in paragraph at lines 12762--12767
[]\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/
it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/
m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc[]\T1/ptm/m/n/10 ,

[2334]
[2335]
Underfull \vbox (badness 3803) has occurred while \output is active
[2336]
[2337]
Underfull \hbox (badness 10000) in paragraph at lines 13038--13046
[]\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/
m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo
c[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13059--13063
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

[2338]
Underfull \hbox (badness 10000) in paragraph at lines 13092--13098
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

Underfull \hbox (badness 2762) in paragraph at lines 13107--13113
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2339]
[2340]
Underfull \hbox (badness 1009) in paragraph at lines 13296--13308
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

[2341]
Underfull \hbox (badness 4779) in paragraph at lines 13366--13368
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]
Underfull \hbox (badness 3780) in paragraph at lines 13821--13827
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2349]
Underfull \hbox (badness 2635) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2350]
[2351]
[2352]
Underfull \hbox (badness 2302) in paragraph at lines 14048--14050
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2353]
[2354]
[2355]
[2356]
[2357]
Underfull \hbox (badness 4441) in paragraph at lines 14347--14352
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/it/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14356--14359
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2358]
[2359]
[2360]
[2361]
[2362]
[2363]
[2364]
Underfull \hbox (badness 2932) in paragraph at lines 14786--14793
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14786--14793
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2365]
[2366]
[2367]
[2368]
[2369]
[2370]
Underfull \hbox (badness 6510) in paragraph at lines 15194--15198
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

Underfull \hbox (badness 10000) in paragraph at lines 15201--15204
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 15201--15204
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2371]
[2372]
[2373]
[2374]
[2375]
[2376]
[2377]
[2378]
[2379]
[2380]
[2381]
Underfull \hbox (badness 10000) in paragraph at lines 15905--15910
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15905--15910
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15911--15913
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

[2382]
Underfull \hbox (badness 10000) in paragraph at lines 15975--15978
[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2383]
[2384]
[2385]
[2386]
[2387]
[2388]
[2389]
[2390]
[2391]
[2392]
[2393]
[2394]
[2395]
[2396]
[2397]
[2398]) (./refman.ind

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]

[2432]

[2433]

[2434]

[2435]

[2436]

[2437]

[2438]

[2439]

[2440]

[2441]

[2442]

[2443]

[2444]

[2445]

[2446]

[2447]

[2448]

[2449]

[2450]

[2451]

[2452]

[2453]

[2454]

[2455]

[2456]

[2457]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10174--10176
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2458]

[2459]

[2460]

[2461]

[2462]

[2463]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11585--11587
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2464]

[2465]

[2466]

[2467]

[2468]

[2469]

[2470]

[2471]

[2472]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13466--13468
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13468--13470
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13470--13472
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 


[2473]

[2474]

[2475]

[2476]

[2477]

[2478]

[2479]

[2480]

[2481]

[2482]) (./refman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix.Rdash.class} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.MethodsList.Rdash.class} has been referenced bu
t does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pipe\\unhbox\040\\voidb@x\040\\unskip\040\040\\
ignorespaces\040operator} has been referenced but does not exist, replaced by a
 fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.xfig} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.defunct} has been referenced but doe
s not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/
helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a
.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/urw/times/utmri8a.pfb>
Output written on refman.pdf (2515 pages, 6876994 bytes).
Transcript written on refman.log.
make[1]: Leaving directory '/build/r-base-4.6.0/doc/manual'
/usr/bin/make -k pdf
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file fullrefman.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}]
No file fullrefman.toc.
(./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 150--158
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 338--341
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 573--579
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657
 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when  
\TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 
`[] 

[43]
[44]
[45]
[46]
[47]
Underfull \hbox (badness 1721) in paragraph at lines 2977--2981
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[48]
[49]
[50]
[51]
[52]
[53]
[54]
Underfull \hbox (badness 2538) in paragraph at lines 3469--3472
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[55]
[56]
[57]
[58]
[59]
Underfull \vbox (badness 3803) has occurred while \output is active
[60]
[61]
[62]
[63]
[64]
[65]
[66]
[67]
Underfull \hbox (badness 10000) in paragraph at lines 4265--4267
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
[88]
Underfull \hbox (badness 2521) in paragraph at lines 5623--5625
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
[108]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
Underfull \hbox (badness 2253) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn
ection[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 2846) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke
t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class

[118]
[119]
[120]
[121]
Underfull \hbox (badness 2261) in paragraph at lines 7873--7878
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[122]
[123]
[124]
Underfull \vbox (badness 10000) has occurred while \output is active
[125]
[126]
[127]
[128]
[129]
[130]
[131]
[132]
[133]
Underfull \hbox (badness 2096) in paragraph at lines 8618--8622
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[134]
[135]
Underfull \hbox (badness 2351) in paragraph at lines 8734--8737
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[136]
[137]
[138]
[139]
[140]
Underfull \hbox (badness 4479) in paragraph at lines 9051--9062
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[141]
[142]
[143]
[144]
[145]
[146]
Underfull \hbox (badness 2698) in paragraph at lines 9465--9471
[]\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 
mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.
finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n
/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 9492--9504
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9492--9504
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[147]
[148]
[149]
Underfull \hbox (badness 3657) in paragraph at lines 9692--9694
[][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac
-tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , 
[]\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 ,

[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
[158]
[159]
Underfull \hbox (badness 1178) in paragraph at lines 10351--10355
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
[194]
[195]
[196]
Underfull \hbox (badness 2744) in paragraph at lines 12723--12725
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[197]
[198]
[199]
[200]
[201]
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
[227]
[228]
Underfull \hbox (badness 2253) in paragraph at lines 14943--14945
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

[229]
Underfull \hbox (badness 1490) in paragraph at lines 14978--14981
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[230]
Underfull \hbox (badness 1565) in paragraph at lines 15064--15068
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[231]
Underfull \hbox (badness 4927) in paragraph at lines 15115--15117
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[232]
[233]
Underfull \hbox (badness 1466) in paragraph at lines 15266--15269
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[234]
[235]
Underfull \hbox (badness 10000) in paragraph at lines 15397--15401
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15408--15411
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[236]
[237]
[238]
[239]
[240]
Underfull \hbox (badness 3965) in paragraph at lines 15712--15716
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[241]
[242]
[243]
[244]
[245]
[246]
[247]
[248]
Underfull \hbox (badness 5260) in paragraph at lines 16225--16225
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[249]
[250]
[251]
[252]
[253]
Underfull \hbox (badness 4429) in paragraph at lines 16517--16520
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[254]
[255]
Underfull \hbox (badness 10000) in paragraph at lines 16624--16626
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[256]
Underfull \hbox (badness 2035) in paragraph at lines 16697--16701
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[257]
Underfull \vbox (badness 10000) has occurred while \output is active
[258]
[259]
[260]
[261]
[262]
[263]
[264]
[265]
[266]
Underfull \hbox (badness 2452) in paragraph at lines 17323--17327
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17323--17327
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[267]
[268]
[269]
Underfull \hbox (badness 1092) in paragraph at lines 17516--17521
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[270]
[271]
[272]
Underfull \hbox (badness 6741) in paragraph at lines 17769--17773
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[273]
[274]
[275]
[276]
[277]
[278]
[279]
[280]
[281]
[282]
[283]
[284]
Underfull \vbox (badness 10000) has occurred while \output is active
[285]
[286]
[287]
[288]
[289]
[290]
[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 1769) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[296]
[297]
[298]
[299]
[300]
Underfull \hbox (badness 10000) in paragraph at lines 19592--19594
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19598--19607
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[301]
[302]
[303]
[304]
[305]
[306]
[307]
[308]
[309]
Underfull \hbox (badness 1442) in paragraph at lines 20210--20212
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[310]
[311]
Underfull \hbox (badness 2452) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[312]
[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 1248) in paragraph at lines 20704--20707
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[318]
[319]
[320]
[321]
[322]
Underfull \hbox (badness 4739) in paragraph at lines 20975--20977
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[323]
[324]
[325]
[326]
[327]
Underfull \vbox (badness 3803) has occurred while \output is active
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
[337]
[338]
[339]
[340]
[341]
Underfull \hbox (badness 2469) in paragraph at lines 22168--22173
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[342]
[343]
Underfull \hbox (badness 1675) in paragraph at lines 22255--22264
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 22265--22278
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 22313--22316
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 22313--22316
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[344]
[345]
Underfull \hbox (badness 1014) in paragraph at lines 22448--22453
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
[354]
[355]
[356]
[357]
[358]
Underfull \hbox (badness 1264) in paragraph at lines 23309--23317
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

[359]
Underfull \hbox (badness 4441) in paragraph at lines 23344--23347
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[360]
[361]
[362]
[363]
[364]
[365]
[366]
[367]
[368]
[369]
[370]
[371]
Underfull \hbox (badness 5231) in paragraph at lines 24169--24171
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
[384]
[385]
[386]
[387]
[388]
[389]
[390]
Underfull \hbox (badness 6380) in paragraph at lines 25335--25341
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 25335--25341
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[391]
[392]
[393]
[394]
[395]
[396]
[397]
[398]
Underfull \hbox (badness 2790) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[399]
[400]
[401]
[402]
[403]
Underfull \hbox (badness 1194) in paragraph at lines 26180--26183
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[404]
[405]
[406]
Underfull \hbox (badness 2368) in paragraph at lines 26390--26396
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[407]
[408]
[409]
[410]
[411]
[412]
Underfull \hbox (badness 10000) in paragraph at lines 26783--26786
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[413]
[414]
[415]
[416]
[417]
[418]
[419]
[420]
[421]
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27435--27437
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[423]
[424]
[425]
[426]
[427]
[428]
[429]
Underfull \hbox (badness 2443) in paragraph at lines 27928--27936
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[430]
[431]
[432]
[433]
[434]
[435]
[436]
Underfull \hbox (badness 1881) in paragraph at lines 28360--28363
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 28385--28387
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[437]
[438]
Underfull \hbox (badness 2142) in paragraph at lines 28532--28536
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

[439]
Underfull \hbox (badness 1968) in paragraph at lines 28589--28594
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[440]
[441]
[442]
Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28910--28913
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

[443]
Underfull \hbox (badness 2689) in paragraph at lines 28936--28938
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28984--28989
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 29002--29005
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[444]
[445]
[446]
[447]
[448]
[449]
Underfull \hbox (badness 10000) in paragraph at lines 29420--29424
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[450]
[451]
[452]
Underfull \hbox (badness 10000) in paragraph at lines 29569--29572
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[453]
Underfull \hbox (badness 7925) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29651--29655
[]\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is 
al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]
\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29656--29665
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s,

[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
[463]
[464]
[465]
[466]
[467]
[468]
[469]
Underfull \hbox (badness 2726) in paragraph at lines 30692--30695
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
[482]
[483]
[484]
[485]
[486]
[487]
[488]
Underfull \vbox (badness 3803) has occurred while \output is active
[489]
[490]
[491]
[492]
[493]
[494]
[495]
[496]
[497]
Underfull \hbox (badness 1533) in paragraph at lines 32526--32529
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[498]
[499]
[500]
Underfull \hbox (badness 1163) in paragraph at lines 32698--32709
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[501]
[502]
[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
[520]
[521]
[522]
[523]
[524]
[525]
[526]
Underfull \hbox (badness 10000) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 34403--34405
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 34406--34410
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[527]
[528]
Underfull \vbox (badness 10000) has occurred while \output is active
[529]
[530]
[531]
[532]
[533]
[534]
[535]
[536]
Underfull \hbox (badness 1655) in paragraph at lines 35014--35016
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
[549]
[550]
[551]
[552]
[553]
[554]
[555]
Underfull \hbox (badness 2261) in paragraph at lines 36229--36234
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
[565]
[566]
[567]
[568]
[569]
[570]
[571]
[572]
Underfull \hbox (badness 3668) in paragraph at lines 37332--37336
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[573]
Underfull \hbox (badness 10000) in paragraph at lines 37423--37434
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
[591]
[592]
[593]
Underfull \vbox (badness 3803) has occurred while \output is active
[594]
[595]
[596]
[597]
[598]
[599]
Underfull \hbox (badness 10000) in paragraph at lines 39086--39088
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[600]
[601]
[602]
[603]
[604]
[605]
Underfull \hbox (badness 2913) in paragraph at lines 39504--39508
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[606]
[607]
[608]
[609]
Underfull \hbox (badness 1072) in paragraph at lines 39755--39759
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 39760--39764
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

[610]
Underfull \hbox (badness 3009) in paragraph at lines 39815--39822
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[611]
[612]
[613]
Underfull \hbox (badness 2644) in paragraph at lines 40050--40054
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
[630]
[631]
[632]
[633]
[634]
[635]
[636]
[637]
[638]
Underfull \hbox (badness 4144) in paragraph at lines 41632--41640
[]\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][
][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary
.data.frame[]\T1/ptm/m/n/10 ). In

Underfull \hbox (badness 1158) in paragraph at lines 41642--41644
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[639]
[640]
[641]
[642]
[643]
[644]
[645] [646]
[647]
[648]
[649]
Underfull \hbox (badness 1137) in paragraph at lines 42291--42297
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 42309--42314
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[650]
[651]
Underfull \hbox (badness 1616) in paragraph at lines 42432--42437
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[652]
[653]
[654]
[655]
Underfull \vbox (badness 3803) has occurred while \output is active
[656]
[657]
[658]
[659]
[660]
Underfull \hbox (badness 1472) in paragraph at lines 42980--42983
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[661]
[662]
[663]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 43192.


[664]
[665]
[666]
[667]
[668]
[669]
[670]
[671]
[672]
[673]
[674]
[675]
Underfull \hbox (badness 10000) in paragraph at lines 43937--43941
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
[684]
[685]
[686]
[687]
[688]
[689]
[690]
[691]
[692]
[693]
Underfull \hbox (badness 10000) in paragraph at lines 45135--45138
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[694]
[695]
[696]
[697]
[698]
[699]
Underfull \vbox (badness 10000) has occurred while \output is active
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
Underfull \hbox (badness 1990) in paragraph at lines 46056--46064
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 46056--46064
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
[720]
[721]
[722]
[723]
[724]
[725]
[726]
[727]
[728]
[729]
Underfull \hbox (badness 1014) in paragraph at lines 47504--47507
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[730]
[731]
Underfull \hbox (badness 2401) in paragraph at lines 47638--47642
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[732]
[733]
Underfull \hbox (badness 3492) in paragraph at lines 47765--47767
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[734]
[735]
Underfull \hbox (badness 2111) in paragraph at lines 47851--47856
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[736]
[737]
[738]
[739]
[740]
[741]
[742]
[743]
[744]
[745]
Underfull \hbox (badness 5417) in paragraph at lines 48517--48521
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[746]
Underfull \hbox (badness 10000) in paragraph at lines 48578--48582
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[747]) (./compiler-pkg.tex
[748]
Chapter 2.

[749]
[750]
[751]
[752]) (./datasets-pkg.tex
Chapter 3.

[753]
Underfull \hbox (badness 1199) in paragraph at lines 55--59
[]\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e
ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN

[754]
[755]
[756]
[757] [758]
[759]
[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]
[774]
[775]
[776]
[777]
[778]
[779]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704
 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co
l = adjustcolor("thistle", 1/3))[] 

[780]
[781]
[782]
[783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[817]
[818]
[819]
[820]
Underfull \hbox (badness 10000) in paragraph at lines 4210--4216
[]\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been
 avail-able at

[821]
[822]
[823]
[824]
[825]
[826]
[827]
[828]
[829]
[830]
[831]
[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]) (./grDevices-pkg.tex
Chapter 4.

[841]
[842]
[843]
[844]
[845]
Underfull \hbox (badness 2221) in paragraph at lines 284--288
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 299--304
[]\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1
0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1
0 in

[846]
[847]
[848]
[849]
[850]
[851]
[852]
[853]
[854]
[855]
Underfull \hbox (badness 1424) in paragraph at lines 925--927
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[856]
Underfull \vbox (badness 3803) has occurred while \output is active
[857]
[858]
[859]
[860]
Underfull \hbox (badness 5175) in paragraph at lines 1253--1255
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[861]
[862]
Underfull \hbox (badness 2512) in paragraph at lines 1372--1374
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[863]
[864]
[865]
[866]
[867]
Underfull \hbox (badness 1490) in paragraph at lines 1672--1677
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1685--1689
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[868]
[869]
[870]
[871]
[872]
[873]
[874]
Underfull \hbox (badness 1325) in paragraph at lines 2100--2110
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[875]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2214
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[876]
[877]
[878]
Underfull \hbox (badness 6758) in paragraph at lines 2400--2403
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[879]
[880]
[881]
[882]
[883]
[884]
Underfull \hbox (badness 1694) in paragraph at lines 2759--2762
[]\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T
1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to

[885]
[886]
[887]
[888]
[889]
[890]
Underfull \hbox (badness 10000) in paragraph at lines 3171--3172


[891]
[892]
[893]
[894]
[895]
[896]
[897]
[898]
[899]
[900]
[901]
[902]
Underfull \vbox (badness 3803) has occurred while \output is active
[903]
[904]
[905]
Underfull \hbox (badness 1484) in paragraph at lines 4137--4140
\T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki
pedia . org / w / index . php ? title = HCL _ color _ space &

[906]
Underfull \vbox (badness 10000) has occurred while \output is active
[907]
[908]
[909]
[910]
Underfull \hbox (badness 1418) in paragraph at lines 4463--4470
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[911]
[912]
[913]
[914]
Underfull \hbox (badness 1152) in paragraph at lines 4750--4757
[]\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col
ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 ,

[915]
[916]
[917]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4933 \aliasA{symbol}{plotmath}{symbol}
                                         [918] [919]
[920]
[921]
Underfull \vbox (badness 3803) has occurred while \output is active
[922]
[923]
Underfull \hbox (badness 1584) in paragraph at lines 5325--5327
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5329--5336
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[924]
[925]
[926]
[927]
Underfull \hbox (badness 1377) in paragraph at lines 5631--5636
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[928]
[929]
Underfull \hbox (badness 1377) in paragraph at lines 5735--5740
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[930]
Underfull \hbox (badness 7344) in paragraph at lines 5804--5806
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[931]
[932]
Underfull \hbox (badness 2035) in paragraph at lines 5944--5953
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[933]
Underfull \hbox (badness 10000) in paragraph at lines 6010--6015
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[934]
[935]
[936]
Underfull \hbox (badness 1546) in paragraph at lines 6151--6159
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[937]
[938]
[939]
[940]
[941]
[942]
Underfull \hbox (badness 3343) in paragraph at lines 6595--6598
[]\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla
y-ing the Graph-ics En-

Underfull \hbox (badness 7740) in paragraph at lines 6595--6598
\T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech 
. wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 /

[943]
[944]
Underfull \hbox (badness 10000) in paragraph at lines 6699--6702
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[945]
[946]
[947]
[948]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[949]
[950]
[951]
[952]
[953]
[954]
[955]
[956]
[957]
[958]
Underfull \hbox (badness 1189) in paragraph at lines 7565--7567
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[959]
Underfull \hbox (badness 10000) in paragraph at lines 7670--7672
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
[968]) (./graphics-pkg.tex
Chapter 5.

[969]
[970]
[971]
[972]
[973]
[974]
[975]
[976]
[977]
[978]
[979]
Underfull \vbox (badness 3803) has occurred while \output is active
[980]
[981]
[982]
[983]
[984]
[985]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[986]
Underfull \vbox (badness 10000) has occurred while \output is active
[987]
[988]
[989]
[990]
[991]
[992]
Underfull \hbox (badness 4634) in paragraph at lines 1459--1462
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[993]
[994]
[995]
[996]
[997]
[998]
[999]
[1000]
[1001]
Underfull \vbox (badness 3803) has occurred while \output is active
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
Underfull \hbox (badness 1728) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[1009]
[1010]
Underfull \hbox (badness 1009) in paragraph at lines 2555--2562
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
[1021]
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \vbox (badness 10000) has occurred while \output is active
[1035]
[1036]
[1037]
[1038]
[1039]
[1040]
Underfull \vbox (badness 3803) has occurred while \output is active
[1041]
[1042]
[1043]
[1044]
[1045]
[1046]
[1047]
Underfull \hbox (badness 3229) in paragraph at lines 4852--4857
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1048]
[1049]
[1050]
[1051]
[1052]
Underfull \hbox (badness 1107) in paragraph at lines 5352--5358
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1053]
[1054]
Underfull \hbox (badness 10000) in paragraph at lines 5481--5484


[1055 </build/r-base-4.6.0/library/graphics/help/figures/mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5542--5544


Underfull \vbox (badness 10000) has occurred while \output is active
[1056]
[1057 </build/r-base-4.6.0/library/graphics/help/figures/oma.pdf>]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6231 \aliasA{plot}{plot.default}{plot}
                                        
[1067]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1
0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are

Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its
 are com-puted from

[1068]
[1069]
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168
[][] 

[1082 </build/r-base-4.6.0/library/graphics/help/figures/pch.pdf>]
[1083]
Underfull \vbox (badness 10000) has occurred while \output is active
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
[1103]
[1104]
[1105]
[1106]
[1107]
[1108]
[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
Underfull \hbox (badness 4954) in paragraph at lines 9309--9311
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1117]
[1118]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
[1119]
[1120]
[1121]
[1122]) (./grid-pkg.tex
Chapter 6.

[1123]
[1124]
[1125]
[1126]
[1127]
[1128]
[1129]
[1130]
[1131]
Underfull \hbox (badness 2680) in paragraph at lines 552--555
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1132]
[1133]
[1134]
[1135]
[1136] [1137]
[1138]
[1139]
[1140]
[1141]
[1142]
Underfull \hbox (badness 4279) in paragraph at lines 1191--1200
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
Underfull \hbox (badness 10000) in paragraph at lines 3106--3108
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1175]
[1176]
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \vbox (badness 10000) has occurred while \output is active
[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
[1204]
Underfull \hbox (badness 1067) in paragraph at lines 4845--4848
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1205]
[1206]
[1207]
[1208]
[1209]
[1210]
Underfull \hbox (badness 7256) in paragraph at lines 5196--5198
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
Underfull \hbox (badness 2142) in paragraph at lines 5652--5656
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1218]
[1219]
Underfull \hbox (badness 4699) in paragraph at lines 5734--5739
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]
[1238]
[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
[1247]
[1248]
[1249]
[1250]
[1251]) (./methods-pkg.tex
[1252]
Chapter 7.

[1253]
[1254]
[1255]
[1256]
[1257]
[1258]
[1259]
[1260]
Underfull \vbox (badness 3803) has occurred while \output is active
[1261]
Underfull \vbox (badness 10000) has occurred while \output is active
[1262]
[1263]
[1264]
[1265]
[1266]
[1267]
[1268]
[1269]
[1270]
[1271]
Underfull \hbox (badness 2237) in paragraph at lines 1393--1395
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1272]
[1273]
[1274]
[1275]
[1276]
[1277]
[1278]
[1279]
[1280]
Underfull \hbox (badness 10000) in paragraph at lines 1995--2000
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1995--2000
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1281]
[1282]
[1283]
Underfull \hbox (badness 2213) in paragraph at lines 2227--2232
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1284]
[1285]
[1286]
[1287]
[1288]
Underfull \hbox (badness 10000) in paragraph at lines 2592--2595
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1289]
[1290]
Underfull \hbox (badness 1132) in paragraph at lines 2732--2736
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1291]
Underfull \hbox (badness 1033) in paragraph at lines 2768--2773
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1292]
[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
Underfull \hbox (badness 1102) in paragraph at lines 3331--3333
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1299]
[1300]
[1301]
[1302]
[1303]
[1304]
Underfull \hbox (badness 10000) in paragraph at lines 3668--3677
[]\T1/ptm/m/n/10 The

[1305]
Underfull \hbox (badness 10000) in paragraph at lines 3788--3789
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1306]
Underfull \hbox (badness 10000) in paragraph at lines 3872--3873
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
[1313]
[1314]
[1315]
[1316]
Underfull \hbox (badness 1769) in paragraph at lines 4515--4521
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4515--4521
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1317]
[1318]
[1319]
Underfull \vbox (badness 5681) has occurred while \output is active
[1320]
[1321]
[1322]
[1323]
Underfull \vbox (badness 1681) has occurred while \output is active
[1324]
[1325]
Underfull \vbox (badness 10000) has occurred while \output is active
[1326]
Underfull \vbox (badness 10000) has occurred while \output is active
[1327]
[1328]
[1329]
Underfull \hbox (badness 4036) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1330]
Underfull \hbox (badness 3803) in paragraph at lines 5497--5499
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1331]
[1332]
[1333]
[1334]
Underfull \hbox (badness 1087) in paragraph at lines 5731--5736
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1335]
[1336]
[1337]
[1338]
[1339]
[1340]
[1341]
[1342]
Underfull \hbox (badness 1675) in paragraph at lines 6448--6454
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1343]
[1344]
[1345]
[1346]
Underfull \vbox (badness 10000) has occurred while \output is active
[1347]
[1348]
[1349]
[1350]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1351]
[1352]
[1353]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7236 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7240 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7241 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1354]
Underfull \hbox (badness 2050) in paragraph at lines 7303--7307
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1355]
[1356]
[1357]
Underfull \hbox (badness 1286) in paragraph at lines 7496--7498
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
[1385]
[1386]
[1387]
[1388]
[1389]
[1390]
[1391]
[1392]
[1393]
[1394]
[1395]
[1396]
[1397]
[1398]
[1399]
Underfull \hbox (badness 2197) in paragraph at lines 10545--10548
[]\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi
4/m/sl/10 https : / / johnmchambers . su . domains /

[1400]
Underfull \hbox (badness 1852) in paragraph at lines 10623--10627
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1401]
[1402]
[1403]
[1404]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1405]
[1406]
[1407]
[1408]
[1409]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1410]
[1411]
[1412]
[1413]
[1414]
[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
Underfull \hbox (badness 3386) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1427]
[1428]
[1429]) (./splines-pkg.tex
[1430]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
[1445]
[1446]) (./stats-pkg.tex
Chapter 10.

[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
Underfull \hbox (badness 1412) in paragraph at lines 903--905
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
Underfull \hbox (badness 2503) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798
 []  \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq(
rx[1], rx[2], length.out = 25) }[] 

[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
[1487]
[1488]
[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
Underfull \hbox (badness 2503) in paragraph at lines 3626--3629
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1504]
[1505]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3741.


[1506]
[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
[1524]
Underfull \hbox (badness 3989) in paragraph at lines 4916--4923
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
Underfull \hbox (badness 2556) in paragraph at lines 5581--5584
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1535]
[1536]
[1537]
[1538]
[1539]
[1540]
[1541]
Underfull \hbox (badness 2503) in paragraph at lines 5997--6001
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1542]
[1543]
[1544]
[1545]
[1546]
[1547]
[1548]
[1549]
[1550]
[1551]
[1552]
[1553]
[1554]
Underfull \hbox (badness 7081) in paragraph at lines 6802--6805
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6806--6808
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1555]
[1556]
[1557]
[1558]
[1559]
[1560]
Underfull \vbox (badness 10000) has occurred while \output is active
[1561]
[1562]
[1563]
Underfull \vbox (badness 10000) has occurred while \output is active
[1564]
[1565]
[1566]
[1567]
[1568]
Underfull \hbox (badness 10000) in paragraph at lines 7704--7707
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/
zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the

[1569]
[1570]
[1571]
Underfull \hbox (badness 2635) in paragraph at lines 7848--7851
[]\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T
1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view =

[1572]
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
[1579]
[1580]
[1581]
[1582]
[1583]
Underfull \hbox (badness 1960) in paragraph at lines 8597--8600
[]\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to 
be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which
 case

[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
Underfull \hbox (badness 2626) in paragraph at lines 9439--9442
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1597]
[1598]
Underfull \hbox (badness 2503) in paragraph at lines 9546--9550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1599]
[1600]
[1601]
[1602]
[1603]
[1604]
[1605]
[1606]
[1607]
[1608]
[1609]
Underfull \hbox (badness 1253) in paragraph at lines 10301--10306
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo
r all pa-ram-e-ters:

Underfull \hbox (badness 1337) in paragraph at lines 10306--10309
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1610]
[1611]
[1612]
Underfull \vbox (badness 10000) has occurred while \output is active
[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
[1621]
[1622]
[1623]
[1624]
Underfull \hbox (badness 4518) in paragraph at lines 11250--11255
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1625]
[1626]
[1627]
[1628]
[1629]
Underfull \hbox (badness 2142) in paragraph at lines 11621--11624
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11640--11643
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1630]
Underfull \hbox (badness 1708) in paragraph at lines 11702--11706
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1631]
[1632]
[1633]
Underfull \hbox (badness 1005) in paragraph at lines 11924--11928
[]\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been 
rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean
 dis-tances

[1634]
[1635]
[1636]
Underfull \hbox (badness 1694) in paragraph at lines 12118--12121
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1637]
[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
[1645]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12627 \aliasA{hat}{influence.measures}{hat}
                                             
[1646]
[1647]
Underfull \hbox (badness 1484) in paragraph at lines 12783--12785
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1648]
[1649]
[1650]
[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
Underfull \hbox (badness 10000) in paragraph at lines 13391--13393
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1659]
[1660]
[1661]
[1662]
[1663]
Underfull \hbox (badness 2894) in paragraph at lines 13735--13739
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
Underfull \hbox (badness 1281) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and 
Re-lated Re-gres-sion Meth-

[1676]
Underfull \hbox (badness 4518) in paragraph at lines 14567--14572
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1677]
[1678]
[1679]
[1680]
[1681]
[1682]
[1683]
[1684]
[1685]
[1686]
Underfull \hbox (badness 1596) in paragraph at lines 15205--15208
\T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(<loadings>, ...)[]\T1/ptm/m/n/10 , he
nce, e.g., []\T1/zi4/m/sl/10 cutoff = <frac>[]\T1/ptm/m/n/10 ; ig-nored for

[1687]
Underfull \hbox (badness 4518) in paragraph at lines 15263--15268
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1688]
[1689]
Underfull \hbox (badness 6412) in paragraph at lines 15404--15408
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 15411--15413
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
Underfull \hbox (badness 2503) in paragraph at lines 16503--16507
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1708]
[1709]
Underfull \vbox (badness 3803) has occurred while \output is active
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 10000) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1717]
[1718]
[1719]
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
[1734]
[1735]
[1736]
[1737]
[1738]
[1739]
[1740]
[1741]
[1742]
Underfull \hbox (badness 1158) in paragraph at lines 18695--18698
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1743]
[1744]
Underfull \vbox (badness 3803) has occurred while \output is active
[1745]
Underfull \vbox (badness 10000) has occurred while \output is active
[1746]
Underfull \vbox (badness 10000) has occurred while \output is active
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1377) in paragraph at lines 19758--19763
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19763--19766
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19776--19780
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19776--19780
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19784--19788
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1761]
[1762]
[1763]
Underfull \vbox (badness 10000) has occurred while \output is active
[1764]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1765]
[1766]
[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
Underfull \hbox (badness 1337) in paragraph at lines 20505--20508
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
Underfull \hbox (badness 10000) in paragraph at lines 20985--20991
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1782]
[1783]
[1784]
[1785]
[1786]
[1787]
[1788]
Underfull \hbox (badness 1194) in paragraph at lines 21419--21422
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
Underfull \hbox (badness 2503) in paragraph at lines 21801--21804
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1795]
Underfull \hbox (badness 3919) in paragraph at lines 21828--21830
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1796]
[1797]
[1798]
[1799]
[1800]
Underfull \hbox (badness 1337) in paragraph at lines 22168--22171
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
Underfull \hbox (badness 10000) in paragraph at lines 23168--23174
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1817]
[1818]
[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
[1835]
[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
Underfull \hbox (badness 1337) in paragraph at lines 24658--24664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1842]
[1843]
[1844]
[1845]
[1846]
[1847]
[1848]
[1849]
Underfull \hbox (badness 1436) in paragraph at lines 25147--25150
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

Underfull \hbox (badness 1009) in paragraph at lines 25150--25153
[]\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro
rs when []\T1/zi4/m/sl/10 j <-

[1850]
[1851]
Underfull \hbox (badness 10000) in paragraph at lines 25316--25317
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
Underfull \hbox (badness 1824) in paragraph at lines 26289--26295
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 26289--26295
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

Underfull \hbox (badness 10000) in paragraph at lines 26310--26313
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
[1874]
[1875]
Underfull \vbox (badness 10000) has occurred while \output is active
[1876]
[1877]
Underfull \hbox (badness 2165) in paragraph at lines 26894--26899
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1878]
[1879]
[1880]
Underfull \hbox (badness 1867) in paragraph at lines 27102--27104
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 27118--27122
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1881]
[1882]
[1883]
[1884]
[1885]
[1886]
[1887]
[1888]
[1889]
[1890]
[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
Underfull \vbox (badness 10000) has occurred while \output is active
[1907]
Underfull \hbox (badness 3514) in paragraph at lines 28799--28804
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1908]
[1909]
[1910]
[1911]
[1912]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 29069--29075
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1913]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1914]
[1915]
[1916]
Underfull \hbox (badness 3514) in paragraph at lines 29302--29307
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1917]
[1918]
Underfull \hbox (badness 3514) in paragraph at lines 29389--29394
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1919]
Underfull \hbox (badness 3514) in paragraph at lines 29454--29459
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1920]
[1921]
Underfull \hbox (badness 3514) in paragraph at lines 29548--29553
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1922]
Underfull \hbox (badness 6691) in paragraph at lines 29640--29645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
Underfull \hbox (badness 4024) in paragraph at lines 30135--30138
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
Underfull \hbox (badness 5431) in paragraph at lines 30753--30755
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1941]
[1942]
[1943]
[1944]
Underfull \hbox (badness 5431) in paragraph at lines 30971--30974
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1945]
[1946]
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 31286--31290
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
Underfull \hbox (badness 1127) in paragraph at lines 31428--31431
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1953]
[1954]
[1955]
Underfull \hbox (badness 1616) in paragraph at lines 31646--31649
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1956]
[1957]
[1958]
[1959]
[1960]
[1961]
[1962]
[1963]
[1964]
[1965]
[1966]
[1967]
[1968]
[1969]
[1970]
[1971]
[1972]
[1973]
[1974]
[1975]
Underfull \hbox (badness 3557) in paragraph at lines 32900--32904
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1976]
[1977]
[1978]
Underfull \vbox (badness 10000) has occurred while \output is active
[1979]
[1980]
[1981]
Underfull \hbox (badness 1337) in paragraph at lines 33268--33272
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1982]
[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
[1990]
Underfull \hbox (badness 1337) in paragraph at lines 33816--33820
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1991]
[1992]
[1993]
[1994]
[1995]
[1996]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1997]
[1998]
[1999]
[2000]
[2001]) (./stats4-pkg.tex
[2002]
Chapter 11.

[2003]
[2004]
[2005]
Underfull \vbox (badness 10000) has occurred while \output is active
[2006]
Underfull \vbox (badness 10000) has occurred while \output is active
[2007]
[2008]
[2009]
[2010]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.506 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[2011]
[2012]
[2013]) (./tcltk-pkg.tex
[2014]
Chapter 12.

[2015]
[2016]
[2017]
[2018]
[2019]
[2020]
[2021]
Underfull \vbox (badness 10000) has occurred while \output is active
[2022]
Underfull \vbox (badness 10000) has occurred while \output is active
[2023]
Underfull \hbox (badness 1546) in paragraph at lines 687--694
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[2024]
[2025]
[2026]
[2027]
[2028]
Underfull \vbox (badness 10000) has occurred while \output is active
[2029]
[2030]
[2031]
[2032]
[2033]
[2034]
[2035]
[2036]) (./tools-pkg.tex
Chapter 13.

[2037]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2038]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2039]
[2040]
[2041]
Underfull \hbox (badness 1308) in paragraph at lines 326--339
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 326--339
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2042]
[2043]
Underfull \hbox (badness 3039) in paragraph at lines 429--431
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2044]
Underfull \hbox (badness 1142) in paragraph at lines 501--505
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2045]
[2046]
[2047]
[2048]
[2049]
[2050]
[2051] [2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
Underfull \hbox (badness 1014) in paragraph at lines 1346--1348
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1352--1354
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2059]
Underfull \hbox (badness 10000) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2060]
[2061]
[2062]
[2063]
[2064]
[2065]
Underfull \hbox (badness 10000) in paragraph at lines 1783--1794
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 
, []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR
AN_check_details() []\T1/ptm/m/n/10 and

[2066]
[2067]
Underfull \hbox (badness 4096) in paragraph at lines 1934--1942
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2068]
Underfull \hbox (badness 1082) in paragraph at lines 1944--1946
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2069]
[2070]
[2071]
[2072]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2073]
[2074]
[2075]
[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 3386) in paragraph at lines 2736--2739
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2081]
[2082]
[2083]
Underfull \hbox (badness 4096) in paragraph at lines 2899--2907
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2084]
[2085]
[2086]
[2087]
[2088]
[2089]
[2090]
[2091]
[2092]
[2093]
[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
Underfull \hbox (badness 1424) in paragraph at lines 3933--3935
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2100]
[2101]
[2102]
Underfull \hbox (badness 4792) in paragraph at lines 4106--4107
[]\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in

[2103]
[2104]
[2105]
[2106]
[2107]
[2108]
[2109]
[2110]
[2111]
[2112]
Underfull \hbox (badness 10000) in paragraph at lines 4717--4719
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2113]
[2114]
[2115]
[2116]
[2117]
[2118]
Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047
 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping")    # "a Small Fox is .."
     (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha
nge)% i.e. BUG[] 

[2119]
[2120]
[2121]
Underfull \hbox (badness 1796) in paragraph at lines 5256--5261
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=

[2122]
Underfull \hbox (badness 1838) in paragraph at lines 5342--5348
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 5342--5348
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
Underfull \hbox (badness 2197) in paragraph at lines 5693--5703
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2129]
Underfull \hbox (badness 1571) in paragraph at lines 5768--5772
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2130]
[2131]
[2132]
[2133]) (./utils-pkg.tex
[2134]
Chapter 14.

[2135]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',

[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
Underfull \hbox (badness 10000) in paragraph at lines 727--733
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 727--733
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2146]
[2147]
[2148]
Underfull \hbox (badness 3861) in paragraph at lines 942--947
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2149]
[2150]
[2151]
Underfull \hbox (badness 10000) in paragraph at lines 1146--1148
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2152]
[2153]
[2154]
Underfull \vbox (badness 3803) has occurred while \output is active
[2155]
[2156]
[2157]
[2158]
[2159]
[2160]
[2161]
Underfull \hbox (badness 3919) in paragraph at lines 1755--1758
[]\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer
red from the

Underfull \hbox (badness 1371) in paragraph at lines 1765--1767
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
Underfull \hbox (badness 2057) in paragraph at lines 2387--2389
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2172]
[2173]
Underfull \hbox (badness 2150) in paragraph at lines 2473--2480
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2473--2480
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2174]
[2175]
[2176]
[2177]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2756 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2178]
[2179]
[2180]
[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
[2195]
[2196]
[2197]
[2198]
Underfull \hbox (badness 6842) in paragraph at lines 4074--4079
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2199]
Underfull \hbox (badness 1430) in paragraph at lines 4156--4160
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2200]
Underfull \hbox (badness 1184) in paragraph at lines 4232--4248
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2201]
[2202]
Underfull \hbox (badness 10000) in paragraph at lines 4382--4384
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2203]
[2204]
[2205]
[2206]
[2207]
[2208]
[2209]
[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
[2216]
[2217]
[2218]
[2219]
[2220]
[2221]
[2222]
[2223]
Underfull \hbox (badness 1622) in paragraph at lines 5684--5688
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2224]
[2225]
[2226]
[2227]
[2228]
[2229]
Underfull \hbox (badness 1448) in paragraph at lines 6069--6074
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2230]
[2231]
[2232]
[2233]
[2234]
[2235]
[2236]
[2237]
Underfull \hbox (badness 1371) in paragraph at lines 6629--6631
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2238]
[2239]
Underfull \hbox (badness 1502) in paragraph at lines 6718--6724
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6718--6724
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2240]
[2241]
[2242]
Underfull \hbox (badness 10000) in paragraph at lines 6904--6913
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6904--6913
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2243]
Underfull \hbox (badness 2150) in paragraph at lines 6967--6970
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2244]
[2245]
Underfull \hbox (badness 3118) in paragraph at lines 7105--7107
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2246]
[2247]
Underfull \hbox (badness 1325) in paragraph at lines 7283--7287
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2248]
[2249]
Underfull \hbox (badness 1424) in paragraph at lines 7375--7378
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2250]
Underfull \hbox (badness 3219) in paragraph at lines 7457--7464
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7457--7464
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

Underfull \hbox (badness 1629) in paragraph at lines 7470--7472
[]\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from 
[][]$\T1/zi4/m/it/10 https : / / CRAN .

[2251]
Underfull \hbox (badness 1024) in paragraph at lines 7586--7589
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will

[2252]
Underfull \hbox (badness 10000) in paragraph at lines 7620--7625
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2253]
Underfull \hbox (badness 5133) in paragraph at lines 7685--7689
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2254]
[2255]
[2256]
[2257]
[2258]
[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
Underfull \hbox (badness 10000) in paragraph at lines 8356--8358
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2265]
[2266]
[2267]
[2268]
[2269]
[2270]
[2271]
[2272] [2273]
[2274]
Underfull \hbox (badness 3690) in paragraph at lines 8992--8995
[]\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in
g[][][] for the pack-age

[2275]
[2276]
[2277]
Underfull \hbox (badness 2310) in paragraph at lines 9145--9150
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
[2284]
[2285]
[2286]
Underfull \hbox (badness 1248) in paragraph at lines 9725--9729
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2287]
[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 2600) in paragraph at lines 10024--10027
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2292]
[2293]
[2294]
[2295]
[2296]
[2297]
[2298]
[2299]
[2300]
Underfull \hbox (badness 1097) in paragraph at lines 10662--10665
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2301]
[2302]
Underfull \hbox (badness 3000) in paragraph at lines 10798--10803
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2303]
[2304]
[2305]
[2306]
[2307]
[2308]
[2309]
[2310]
[2311]
Underfull \hbox (badness 2134) in paragraph at lines 11395--11400
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2312]
Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2313]
[2314]
[2315]
[2316]
[2317]
[2318]
[2319]
[2320]
Underfull \hbox (badness 6110) in paragraph at lines 11951--11954
\T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki
pedia . org / w / index . php ? title = Roman _ numerals &

[2321]
[2322]
[2323]
[2324]
[2325]
[2326]
[2327]
Underfull \hbox (badness 4060) in paragraph at lines 12394--12397
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2328]
[2329]
[2330]
[2331]
Underfull \hbox (badness 2150) in paragraph at lines 12673--12675
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /

[2332]
[2333]
Underfull \hbox (badness 5832) in paragraph at lines 12762--12767
[]\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/
it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/
m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc[]\T1/ptm/m/n/10 ,

[2334]
[2335]
Underfull \vbox (badness 3803) has occurred while \output is active
[2336]
[2337]
Underfull \hbox (badness 10000) in paragraph at lines 13038--13046
[]\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/
m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo
c[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13059--13063
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

[2338]
Underfull \hbox (badness 10000) in paragraph at lines 13092--13098
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

Underfull \hbox (badness 2762) in paragraph at lines 13107--13113
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2339]
[2340]
Underfull \hbox (badness 1009) in paragraph at lines 13296--13308
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

[2341]
Underfull \hbox (badness 4779) in paragraph at lines 13366--13368
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]
Underfull \hbox (badness 3780) in paragraph at lines 13821--13827
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2349]
Underfull \hbox (badness 2635) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2350]
[2351]
[2352]
Underfull \hbox (badness 2302) in paragraph at lines 14048--14050
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2353]
[2354]
[2355]
[2356]
[2357]
Underfull \hbox (badness 4441) in paragraph at lines 14347--14352
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/it/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14356--14359
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2358]
[2359]
[2360]
[2361]
[2362]
[2363]
[2364]
Underfull \hbox (badness 2932) in paragraph at lines 14786--14793
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14786--14793
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2365]
[2366]
[2367]
[2368]
[2369]
[2370]
Underfull \hbox (badness 6510) in paragraph at lines 15194--15198
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

Underfull \hbox (badness 10000) in paragraph at lines 15201--15204
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 15201--15204
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2371]
[2372]
[2373]
[2374]
[2375]
[2376]
[2377]
[2378]
[2379]
[2380]
[2381]
Underfull \hbox (badness 10000) in paragraph at lines 15905--15910
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15905--15910
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15911--15913
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

[2382]
Underfull \hbox (badness 10000) in paragraph at lines 15975--15978
[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2383]
[2384]
[2385]
[2386]
[2387]
[2388]
[2389]
[2390]
[2391]
[2392]
[2393]
[2394]
[2395]
[2396]
[2397]
[2398])
No file fullrefman.ind.
(./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix.Rdash.class} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.MethodsList.Rdash.class} has been referenced bu
t does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pipe\\unhbox\040\\voidb@x\040\\unskip\040\040\\
ignorespaces\040operator} has been referenced but does not exist, replaced by a
 fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.xfig} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.defunct} has been referenced but doe
s not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/
helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a
.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2399 pages, 6115539 bytes).
Transcript written on fullrefman.log.
This is makeindex, version 2.17 [TeX Live 2025/dev] (kpathsea + Thai support).
Scanning input file fullrefman.idx...................done (15437 entries accepted, 43 rejected).
Sorting entries...................................................................................................................................................................done (238703 comparisons).
Generating output file fullrefman.ind..................done (15395 lines written, 56 warnings).
Output written in fullrefman.ind.
Transcript written in fullrefman.ilg.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./fullrefman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 150--158
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 338--341
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 573--579
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657
 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when  
\TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 
`[] 

[43]
[44]
[45]
[46]
[47]
Underfull \hbox (badness 1721) in paragraph at lines 2977--2981
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[48]
[49]
[50]
[51]
[52]
[53]
[54]
Underfull \hbox (badness 2538) in paragraph at lines 3469--3472
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[55]
[56]
[57]
[58]
[59]
Underfull \vbox (badness 3803) has occurred while \output is active
[60]
[61]
[62]
[63]
[64]
[65]
[66]
[67]
Underfull \hbox (badness 10000) in paragraph at lines 4265--4267
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
[88]
Underfull \hbox (badness 2521) in paragraph at lines 5623--5625
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
[108]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
Underfull \hbox (badness 2253) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn
ection[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 2846) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke
t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class

[118]
[119]
[120]
[121]
Underfull \hbox (badness 2261) in paragraph at lines 7873--7878
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[122]
[123]
[124]
Underfull \vbox (badness 10000) has occurred while \output is active
[125]
[126]
[127]
[128]
[129]
[130]
[131]
[132]
[133]
Underfull \hbox (badness 2096) in paragraph at lines 8618--8622
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[134]
[135]
Underfull \hbox (badness 2351) in paragraph at lines 8734--8737
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[136]
[137]
[138]
[139]
[140]
Underfull \hbox (badness 4479) in paragraph at lines 9051--9062
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[141]
[142]
[143]
[144]
[145]
[146]
Underfull \hbox (badness 2698) in paragraph at lines 9465--9471
[]\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 
mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.
finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n
/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 9492--9504
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9492--9504
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[147]
[148]
[149]
Underfull \hbox (badness 3657) in paragraph at lines 9692--9694
[][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac
-tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , 
[]\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 ,

[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
[158]
[159]
Underfull \hbox (badness 1178) in paragraph at lines 10351--10355
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
[194]
[195]
[196]
Underfull \hbox (badness 2744) in paragraph at lines 12723--12725
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[197]
[198]
[199]
[200]
[201]
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
[227]
[228]
Underfull \hbox (badness 2253) in paragraph at lines 14943--14945
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

[229]
Underfull \hbox (badness 1490) in paragraph at lines 14978--14981
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[230]
Underfull \hbox (badness 1565) in paragraph at lines 15064--15068
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[231]
Underfull \hbox (badness 4927) in paragraph at lines 15115--15117
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[232]
[233]
Underfull \hbox (badness 1466) in paragraph at lines 15266--15269
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[234]
[235]
Underfull \hbox (badness 10000) in paragraph at lines 15397--15401
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15408--15411
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[236]
[237]
[238]
[239]
[240]
Underfull \hbox (badness 3965) in paragraph at lines 15712--15716
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[241]
[242]
[243]
[244]
[245]
[246]
[247]
[248]
Underfull \hbox (badness 5260) in paragraph at lines 16225--16225
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[249]
[250]
[251]
[252]
[253]
Underfull \hbox (badness 4429) in paragraph at lines 16517--16520
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[254]
[255]
Underfull \hbox (badness 10000) in paragraph at lines 16624--16626
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[256]
Underfull \hbox (badness 2035) in paragraph at lines 16697--16701
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[257]
Underfull \vbox (badness 10000) has occurred while \output is active
[258]
[259]
[260]
[261]
[262]
[263]
[264]
[265]
[266]
Underfull \hbox (badness 2452) in paragraph at lines 17323--17327
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17323--17327
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[267]
[268]
[269]
Underfull \hbox (badness 1092) in paragraph at lines 17516--17521
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[270]
[271]
[272]
Underfull \hbox (badness 6741) in paragraph at lines 17769--17773
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[273]
[274]
[275]
[276]
[277]
[278]
[279]
[280]
[281]
[282]
[283]
[284]
Underfull \vbox (badness 10000) has occurred while \output is active
[285]
[286]
[287]
[288]
[289]
[290]
[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 1769) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[296]
[297]
[298]
[299]
[300]
Underfull \hbox (badness 10000) in paragraph at lines 19592--19594
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19598--19607
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[301]
[302]
[303]
[304]
[305]
[306]
[307]
[308]
[309]
Underfull \hbox (badness 1442) in paragraph at lines 20210--20212
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[310]
[311]
Underfull \hbox (badness 2452) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[312]
[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 1248) in paragraph at lines 20704--20707
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[318]
[319]
[320]
[321]
[322]
Underfull \hbox (badness 4739) in paragraph at lines 20975--20977
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[323]
[324]
[325]
[326]
[327]
Underfull \vbox (badness 3803) has occurred while \output is active
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
[337]
[338]
[339]
[340]
[341]
Underfull \hbox (badness 2469) in paragraph at lines 22168--22173
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[342]
[343]
Underfull \hbox (badness 1675) in paragraph at lines 22255--22264
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 22265--22278
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 22313--22316
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 22313--22316
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[344]
[345]
Underfull \hbox (badness 1014) in paragraph at lines 22448--22453
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
[354]
[355]
[356]
[357]
[358]
Underfull \hbox (badness 1264) in paragraph at lines 23309--23317
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

[359]
Underfull \hbox (badness 4441) in paragraph at lines 23344--23347
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[360]
[361]
[362]
[363]
[364]
[365]
[366]
[367]
[368]
[369]
[370]
[371]
Underfull \hbox (badness 5231) in paragraph at lines 24169--24171
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
[384]
[385]
[386]
[387]
[388]
[389]
[390]
Underfull \hbox (badness 6380) in paragraph at lines 25335--25341
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 25335--25341
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[391]
[392]
[393]
[394]
[395]
[396]
[397]
[398]
Underfull \hbox (badness 2790) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[399]
[400]
[401]
[402]
[403]
Underfull \hbox (badness 1194) in paragraph at lines 26180--26183
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[404]
[405]
[406]
Underfull \hbox (badness 2368) in paragraph at lines 26390--26396
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[407]
[408]
[409]
[410]
[411]
[412]
Underfull \hbox (badness 10000) in paragraph at lines 26783--26786
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[413]
[414]
[415]
[416]
[417]
[418]
[419]
[420]
[421]
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27435--27437
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[423]
[424]
[425]
[426]
[427]
[428]
[429]
Underfull \hbox (badness 2443) in paragraph at lines 27928--27936
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[430]
[431]
[432]
[433]
[434]
[435]
[436]
Underfull \hbox (badness 1881) in paragraph at lines 28360--28363
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 28385--28387
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[437]
[438]
Underfull \hbox (badness 2142) in paragraph at lines 28532--28536
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

[439]
Underfull \hbox (badness 1968) in paragraph at lines 28589--28594
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[440]
[441]
[442]
Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28910--28913
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

[443]
Underfull \hbox (badness 2689) in paragraph at lines 28936--28938
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28984--28989
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 29002--29005
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[444]
[445]
[446]
[447]
[448]
[449]
Underfull \hbox (badness 10000) in paragraph at lines 29420--29424
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[450]
[451]
[452]
Underfull \hbox (badness 10000) in paragraph at lines 29569--29572
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[453]
Underfull \hbox (badness 7925) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29651--29655
[]\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is 
al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]
\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29656--29665
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s,

[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
[463]
[464]
[465]
[466]
[467]
[468]
[469]
Underfull \hbox (badness 2726) in paragraph at lines 30692--30695
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
[482]
[483]
[484]
[485]
[486]
[487]
[488]
Underfull \vbox (badness 3803) has occurred while \output is active
[489]
[490]
[491]
[492]
[493]
[494]
[495]
[496]
[497]
Underfull \hbox (badness 1533) in paragraph at lines 32526--32529
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[498]
[499]
[500]
Underfull \hbox (badness 1163) in paragraph at lines 32698--32709
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[501]
[502]
[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
[520]
[521]
[522]
[523]
[524]
[525]
[526]
Underfull \hbox (badness 10000) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 34403--34405
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 34406--34410
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[527]
[528]
Underfull \vbox (badness 10000) has occurred while \output is active
[529]
[530]
[531]
[532]
[533]
[534]
[535]
[536]
Underfull \hbox (badness 1655) in paragraph at lines 35014--35016
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
[549]
[550]
[551]
[552]
[553]
[554]
[555]
Underfull \hbox (badness 2261) in paragraph at lines 36229--36234
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
[565]
[566]
[567]
[568]
[569]
[570]
[571]
[572]
Underfull \hbox (badness 3668) in paragraph at lines 37332--37336
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[573]
Underfull \hbox (badness 10000) in paragraph at lines 37423--37434
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
[591]
[592]
[593]
Underfull \vbox (badness 3803) has occurred while \output is active
[594]
[595]
[596]
[597]
[598]
[599]
Underfull \hbox (badness 10000) in paragraph at lines 39086--39088
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[600]
[601]
[602]
[603]
[604]
[605]
Underfull \hbox (badness 2913) in paragraph at lines 39504--39508
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[606]
[607]
[608]
[609]
Underfull \hbox (badness 1072) in paragraph at lines 39755--39759
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 39760--39764
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

[610]
Underfull \hbox (badness 3009) in paragraph at lines 39815--39822
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[611]
[612]
[613]
Underfull \hbox (badness 2644) in paragraph at lines 40050--40054
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
[630]
[631]
[632]
[633]
[634]
[635]
[636]
[637]
[638]
Underfull \hbox (badness 4144) in paragraph at lines 41632--41640
[]\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][
][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary
.data.frame[]\T1/ptm/m/n/10 ). In

Underfull \hbox (badness 1158) in paragraph at lines 41642--41644
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[639]
[640]
[641]
[642]
[643]
[644]
[645] [646]
[647]
[648]
[649]
Underfull \hbox (badness 1137) in paragraph at lines 42291--42297
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 42309--42314
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[650]
[651]
Underfull \hbox (badness 1616) in paragraph at lines 42432--42437
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[652]
[653]
[654]
[655]
Underfull \vbox (badness 3803) has occurred while \output is active
[656]
[657]
[658]
[659]
[660]
Underfull \hbox (badness 1472) in paragraph at lines 42980--42983
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[661]
[662]
[663]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 43192.


[664]
[665]
[666]
[667]
[668]
[669]
[670]
[671]
[672]
[673]
[674]
[675]
Underfull \hbox (badness 10000) in paragraph at lines 43937--43941
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
[684]
[685]
[686]
[687]
[688]
[689]
[690]
[691]
[692]
[693]
Underfull \hbox (badness 10000) in paragraph at lines 45135--45138
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[694]
[695]
[696]
[697]
[698]
[699]
Underfull \vbox (badness 10000) has occurred while \output is active
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
Underfull \hbox (badness 1990) in paragraph at lines 46056--46064
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 46056--46064
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
[720]
[721]
[722]
[723]
[724]
[725]
[726]
[727]
[728]
[729]
Underfull \hbox (badness 1014) in paragraph at lines 47504--47507
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[730]
[731]
Underfull \hbox (badness 2401) in paragraph at lines 47638--47642
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[732]
[733]
Underfull \hbox (badness 3492) in paragraph at lines 47765--47767
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[734]
[735]
Underfull \hbox (badness 2111) in paragraph at lines 47851--47856
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[736]
[737]
[738]
[739]
[740]
[741]
[742]
[743]
[744]
[745]
Underfull \hbox (badness 5417) in paragraph at lines 48517--48521
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[746]
Underfull \hbox (badness 10000) in paragraph at lines 48578--48582
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[747]) (./compiler-pkg.tex
[748]
Chapter 2.

[749]
[750]
[751]
[752]) (./datasets-pkg.tex
Chapter 3.

[753]
Underfull \hbox (badness 1199) in paragraph at lines 55--59
[]\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e
ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN

[754]
[755]
[756]
[757] [758]
[759]
[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]
[774]
[775]
[776]
[777]
[778]
[779]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704
 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co
l = adjustcolor("thistle", 1/3))[] 

[780]
[781]
[782]
[783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[817]
[818]
[819]
[820]
Underfull \hbox (badness 10000) in paragraph at lines 4210--4216
[]\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been
 avail-able at

[821]
[822]
[823]
[824]
[825]
[826]
[827]
[828]
[829]
[830]
[831]
[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]) (./grDevices-pkg.tex
Chapter 4.

[841]
[842]
[843]
[844]
[845]
Underfull \hbox (badness 2221) in paragraph at lines 284--288
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 299--304
[]\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1
0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1
0 in

[846]
[847]
[848]
[849]
[850]
[851]
[852]
[853]
[854]
[855]
Underfull \hbox (badness 1424) in paragraph at lines 925--927
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[856]
Underfull \vbox (badness 3803) has occurred while \output is active
[857]
[858]
[859]
[860]
Underfull \hbox (badness 5175) in paragraph at lines 1253--1255
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[861]
[862]
Underfull \hbox (badness 2512) in paragraph at lines 1372--1374
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[863]
[864]
[865]
[866]
[867]
Underfull \hbox (badness 1490) in paragraph at lines 1672--1677
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1685--1689
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[868]
[869]
[870]
[871]
[872]
[873]
[874]
Underfull \hbox (badness 1325) in paragraph at lines 2100--2110
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[875]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2214
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[876]
[877]
[878]
Underfull \hbox (badness 6758) in paragraph at lines 2400--2403
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[879]
[880]
[881]
[882]
[883]
[884]
Underfull \hbox (badness 1694) in paragraph at lines 2759--2762
[]\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T
1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to

[885]
[886]
[887]
[888]
[889]
[890]
Underfull \hbox (badness 10000) in paragraph at lines 3171--3172


[891]
[892]
[893]
[894]
[895]
[896]
[897]
[898]
[899]
[900]
[901]
[902]
Underfull \vbox (badness 3803) has occurred while \output is active
[903]
[904]
[905]
Underfull \hbox (badness 1484) in paragraph at lines 4137--4140
\T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki
pedia . org / w / index . php ? title = HCL _ color _ space &

[906]
Underfull \vbox (badness 10000) has occurred while \output is active
[907]
[908]
[909]
[910]
Underfull \hbox (badness 1418) in paragraph at lines 4463--4470
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[911]
[912]
[913]
[914]
Underfull \hbox (badness 1152) in paragraph at lines 4750--4757
[]\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col
ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 ,

[915]
[916]
[917]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4933 \aliasA{symbol}{plotmath}{symbol}
                                         [918] [919]
[920]
[921]
Underfull \vbox (badness 3803) has occurred while \output is active
[922]
[923]
Underfull \hbox (badness 1584) in paragraph at lines 5325--5327
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5329--5336
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[924]
[925]
[926]
[927]
Underfull \hbox (badness 1377) in paragraph at lines 5631--5636
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[928]
[929]
Underfull \hbox (badness 1377) in paragraph at lines 5735--5740
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[930]
Underfull \hbox (badness 7344) in paragraph at lines 5804--5806
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[931]
[932]
Underfull \hbox (badness 2035) in paragraph at lines 5944--5953
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[933]
Underfull \hbox (badness 10000) in paragraph at lines 6010--6015
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[934]
[935]
[936]
Underfull \hbox (badness 1546) in paragraph at lines 6151--6159
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[937]
[938]
[939]
[940]
[941]
[942]
Underfull \hbox (badness 3343) in paragraph at lines 6595--6598
[]\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla
y-ing the Graph-ics En-

Underfull \hbox (badness 7740) in paragraph at lines 6595--6598
\T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech 
. wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 /

[943]
[944]
Underfull \hbox (badness 10000) in paragraph at lines 6699--6702
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[945]
[946]
[947]
[948]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[949]
[950]
[951]
[952]
[953]
[954]
[955]
[956]
[957]
[958]
Underfull \hbox (badness 1189) in paragraph at lines 7565--7567
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[959]
Underfull \hbox (badness 10000) in paragraph at lines 7670--7672
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
[968]) (./graphics-pkg.tex
Chapter 5.

[969]
[970]
[971]
[972]
[973]
[974]
[975]
[976]
[977]
[978]
[979]
Underfull \vbox (badness 3803) has occurred while \output is active
[980]
[981]
[982]
[983]
[984]
[985]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[986]
Underfull \vbox (badness 10000) has occurred while \output is active
[987]
[988]
[989]
[990]
[991]
[992]
Underfull \hbox (badness 4634) in paragraph at lines 1459--1462
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[993]
[994]
[995]
[996]
[997]
[998]
[999]
[1000]
[1001]
Underfull \vbox (badness 3803) has occurred while \output is active
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
Underfull \hbox (badness 1728) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[1009]
[1010]
Underfull \hbox (badness 1009) in paragraph at lines 2555--2562
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
[1021]
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \vbox (badness 10000) has occurred while \output is active
[1035]
[1036]
[1037]
[1038]
[1039]
[1040]
Underfull \vbox (badness 3803) has occurred while \output is active
[1041]
[1042]
[1043]
[1044]
[1045]
[1046]
[1047]
Underfull \hbox (badness 3229) in paragraph at lines 4852--4857
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1048]
[1049]
[1050]
[1051]
[1052]
Underfull \hbox (badness 1107) in paragraph at lines 5352--5358
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1053]
[1054]
Underfull \hbox (badness 10000) in paragraph at lines 5481--5484


[1055 </build/r-base-4.6.0/library/graphics/help/figures/mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5542--5544


Underfull \vbox (badness 10000) has occurred while \output is active
[1056]
[1057 </build/r-base-4.6.0/library/graphics/help/figures/oma.pdf>]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6231 \aliasA{plot}{plot.default}{plot}
                                        
[1067]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1
0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are

Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its
 are com-puted from

[1068]
[1069]
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168
[][] 

[1082 </build/r-base-4.6.0/library/graphics/help/figures/pch.pdf>]
[1083]
Underfull \vbox (badness 10000) has occurred while \output is active
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
[1103]
[1104]
[1105]
[1106]
[1107]
[1108]
[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
Underfull \hbox (badness 4954) in paragraph at lines 9309--9311
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1117]
[1118]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
[1119]
[1120]
[1121]
[1122]) (./grid-pkg.tex
Chapter 6.

[1123]
[1124]
[1125]
[1126]
[1127]
[1128]
[1129]
[1130]
[1131]
Underfull \hbox (badness 2680) in paragraph at lines 552--555
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1132]
[1133]
[1134]
[1135]
[1136] [1137]
[1138]
[1139]
[1140]
[1141]
[1142]
Underfull \hbox (badness 4279) in paragraph at lines 1191--1200
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
Underfull \hbox (badness 10000) in paragraph at lines 3106--3108
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1175]
[1176]
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \vbox (badness 10000) has occurred while \output is active
[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
[1204]
Underfull \hbox (badness 1067) in paragraph at lines 4845--4848
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1205]
[1206]
[1207]
[1208]
[1209]
[1210]
Underfull \hbox (badness 7256) in paragraph at lines 5196--5198
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
Underfull \hbox (badness 2142) in paragraph at lines 5652--5656
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1218]
[1219]
Underfull \hbox (badness 4699) in paragraph at lines 5734--5739
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]
[1238]
[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
[1247]
[1248]
[1249]
[1250]
[1251]) (./methods-pkg.tex
[1252]
Chapter 7.

[1253]
[1254]
[1255]
[1256]
[1257]
[1258]
[1259]
[1260]
Underfull \vbox (badness 3803) has occurred while \output is active
[1261]
Underfull \vbox (badness 10000) has occurred while \output is active
[1262]
[1263]
[1264]
[1265]
[1266]
[1267]
[1268]
[1269]
[1270]
[1271]
Underfull \hbox (badness 2237) in paragraph at lines 1393--1395
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1272]
[1273]
[1274]
[1275]
[1276]
[1277]
[1278]
[1279]
[1280]
Underfull \hbox (badness 10000) in paragraph at lines 1995--2000
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1995--2000
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1281]
[1282]
[1283]
Underfull \hbox (badness 2213) in paragraph at lines 2227--2232
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1284]
[1285]
[1286]
[1287]
[1288]
Underfull \hbox (badness 10000) in paragraph at lines 2592--2595
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1289]
[1290]
Underfull \hbox (badness 1132) in paragraph at lines 2732--2736
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1291]
Underfull \hbox (badness 1033) in paragraph at lines 2768--2773
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1292]
[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
Underfull \hbox (badness 1102) in paragraph at lines 3331--3333
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1299]
[1300]
[1301]
[1302]
[1303]
[1304]
Underfull \hbox (badness 10000) in paragraph at lines 3668--3677
[]\T1/ptm/m/n/10 The

[1305]
Underfull \hbox (badness 10000) in paragraph at lines 3788--3789
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1306]
Underfull \hbox (badness 10000) in paragraph at lines 3872--3873
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
[1313]
[1314]
[1315]
[1316]
Underfull \hbox (badness 1769) in paragraph at lines 4515--4521
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4515--4521
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1317]
[1318]
[1319]
Underfull \vbox (badness 5681) has occurred while \output is active
[1320]
[1321]
[1322]
[1323]
Underfull \vbox (badness 1681) has occurred while \output is active
[1324]
[1325]
Underfull \vbox (badness 10000) has occurred while \output is active
[1326]
Underfull \vbox (badness 10000) has occurred while \output is active
[1327]
[1328]
[1329]
Underfull \hbox (badness 4036) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1330]
Underfull \hbox (badness 3803) in paragraph at lines 5497--5499
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1331]
[1332]
[1333]
[1334]
Underfull \hbox (badness 1087) in paragraph at lines 5731--5736
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1335]
[1336]
[1337]
[1338]
[1339]
[1340]
[1341]
[1342]
Underfull \hbox (badness 1675) in paragraph at lines 6448--6454
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1343]
[1344]
[1345]
[1346]
Underfull \vbox (badness 10000) has occurred while \output is active
[1347]
[1348]
[1349]
[1350]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1351]
[1352]
[1353]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7236 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7240 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7241 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1354]
Underfull \hbox (badness 2050) in paragraph at lines 7303--7307
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1355]
[1356]
[1357]
Underfull \hbox (badness 1286) in paragraph at lines 7496--7498
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
[1385]
[1386]
[1387]
[1388]
[1389]
[1390]
[1391]
[1392]
[1393]
[1394]
[1395]
[1396]
[1397]
[1398]
[1399]
Underfull \hbox (badness 2197) in paragraph at lines 10545--10548
[]\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi
4/m/sl/10 https : / / johnmchambers . su . domains /

[1400]
Underfull \hbox (badness 1852) in paragraph at lines 10623--10627
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1401]
[1402]
[1403]
[1404]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1405]
[1406]
[1407]
[1408]
[1409]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1410]
[1411]
[1412]
[1413]
[1414]
[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
Underfull \hbox (badness 3386) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1427]
[1428]
[1429]) (./splines-pkg.tex
[1430]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
[1445]
[1446]) (./stats-pkg.tex
Chapter 10.

[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
Underfull \hbox (badness 1412) in paragraph at lines 903--905
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
Underfull \hbox (badness 2503) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798
 []  \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq(
rx[1], rx[2], length.out = 25) }[] 

[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
[1487]
[1488]
[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
Underfull \hbox (badness 2503) in paragraph at lines 3626--3629
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1504]
[1505]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3741.


[1506]
[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
[1524]
Underfull \hbox (badness 3989) in paragraph at lines 4916--4923
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
Underfull \hbox (badness 2556) in paragraph at lines 5581--5584
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1535]
[1536]
[1537]
[1538]
[1539]
[1540]
[1541]
Underfull \hbox (badness 2503) in paragraph at lines 5997--6001
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1542]
[1543]
[1544]
[1545]
[1546]
[1547]
[1548]
[1549]
[1550]
[1551]
[1552]
[1553]
[1554]
Underfull \hbox (badness 7081) in paragraph at lines 6802--6805
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6806--6808
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1555]
[1556]
[1557]
[1558]
[1559]
[1560]
Underfull \vbox (badness 10000) has occurred while \output is active
[1561]
[1562]
[1563]
Underfull \vbox (badness 10000) has occurred while \output is active
[1564]
[1565]
[1566]
[1567]
[1568]
Underfull \hbox (badness 10000) in paragraph at lines 7704--7707
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/
zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the

[1569]
[1570]
[1571]
Underfull \hbox (badness 2635) in paragraph at lines 7848--7851
[]\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T
1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view =

[1572]
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
[1579]
[1580]
[1581]
[1582]
[1583]
Underfull \hbox (badness 1960) in paragraph at lines 8597--8600
[]\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to 
be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which
 case

[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
Underfull \hbox (badness 2626) in paragraph at lines 9439--9442
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1597]
[1598]
Underfull \hbox (badness 2503) in paragraph at lines 9546--9550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1599]
[1600]
[1601]
[1602]
[1603]
[1604]
[1605]
[1606]
[1607]
[1608]
[1609]
Underfull \hbox (badness 1253) in paragraph at lines 10301--10306
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo
r all pa-ram-e-ters:

Underfull \hbox (badness 1337) in paragraph at lines 10306--10309
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1610]
[1611]
[1612]
Underfull \vbox (badness 10000) has occurred while \output is active
[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
[1621]
[1622]
[1623]
[1624]
Underfull \hbox (badness 4518) in paragraph at lines 11250--11255
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1625]
[1626]
[1627]
[1628]
[1629]
Underfull \hbox (badness 2142) in paragraph at lines 11621--11624
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11640--11643
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1630]
Underfull \hbox (badness 1708) in paragraph at lines 11702--11706
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1631]
[1632]
[1633]
Underfull \hbox (badness 1005) in paragraph at lines 11924--11928
[]\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been 
rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean
 dis-tances

[1634]
[1635]
[1636]
Underfull \hbox (badness 1694) in paragraph at lines 12118--12121
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1637]
[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
[1645]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12627 \aliasA{hat}{influence.measures}{hat}
                                             
[1646]
[1647]
Underfull \hbox (badness 1484) in paragraph at lines 12783--12785
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1648]
[1649]
[1650]
[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
Underfull \hbox (badness 10000) in paragraph at lines 13391--13393
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1659]
[1660]
[1661]
[1662]
[1663]
Underfull \hbox (badness 2894) in paragraph at lines 13735--13739
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
Underfull \hbox (badness 1281) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and 
Re-lated Re-gres-sion Meth-

[1676]
Underfull \hbox (badness 4518) in paragraph at lines 14567--14572
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1677]
[1678]
[1679]
[1680]
[1681]
[1682]
[1683]
[1684]
[1685]
[1686]
Underfull \hbox (badness 1596) in paragraph at lines 15205--15208
\T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(<loadings>, ...)[]\T1/ptm/m/n/10 , he
nce, e.g., []\T1/zi4/m/sl/10 cutoff = <frac>[]\T1/ptm/m/n/10 ; ig-nored for

[1687]
Underfull \hbox (badness 4518) in paragraph at lines 15263--15268
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1688]
[1689]
Underfull \hbox (badness 6412) in paragraph at lines 15404--15408
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 15411--15413
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
Underfull \hbox (badness 2503) in paragraph at lines 16503--16507
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1708]
[1709]
Underfull \vbox (badness 3803) has occurred while \output is active
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 10000) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1717]
[1718]
[1719]
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
[1734]
[1735]
[1736]
[1737]
[1738]
[1739]
[1740]
[1741]
[1742]
Underfull \hbox (badness 1158) in paragraph at lines 18695--18698
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1743]
[1744]
Underfull \vbox (badness 3803) has occurred while \output is active
[1745]
Underfull \vbox (badness 10000) has occurred while \output is active
[1746]
Underfull \vbox (badness 10000) has occurred while \output is active
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1377) in paragraph at lines 19758--19763
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19763--19766
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19776--19780
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19776--19780
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19784--19788
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1761]
[1762]
[1763]
Underfull \vbox (badness 10000) has occurred while \output is active
[1764]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1765]
[1766]
[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
Underfull \hbox (badness 1337) in paragraph at lines 20505--20508
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
Underfull \hbox (badness 10000) in paragraph at lines 20985--20991
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1782]
[1783]
[1784]
[1785]
[1786]
[1787]
[1788]
Underfull \hbox (badness 1194) in paragraph at lines 21419--21422
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
Underfull \hbox (badness 2503) in paragraph at lines 21801--21804
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1795]
Underfull \hbox (badness 3919) in paragraph at lines 21828--21830
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1796]
[1797]
[1798]
[1799]
[1800]
Underfull \hbox (badness 1337) in paragraph at lines 22168--22171
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
Underfull \hbox (badness 10000) in paragraph at lines 23168--23174
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1817]
[1818]
[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
[1835]
[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
Underfull \hbox (badness 1337) in paragraph at lines 24658--24664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1842]
[1843]
[1844]
[1845]
[1846]
[1847]
[1848]
[1849]
Underfull \hbox (badness 1436) in paragraph at lines 25147--25150
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

Underfull \hbox (badness 1009) in paragraph at lines 25150--25153
[]\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro
rs when []\T1/zi4/m/sl/10 j <-

[1850]
[1851]
Underfull \hbox (badness 10000) in paragraph at lines 25316--25317
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
Underfull \hbox (badness 1824) in paragraph at lines 26289--26295
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 26289--26295
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

Underfull \hbox (badness 10000) in paragraph at lines 26310--26313
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
[1874]
[1875]
Underfull \vbox (badness 10000) has occurred while \output is active
[1876]
[1877]
Underfull \hbox (badness 2165) in paragraph at lines 26894--26899
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1878]
[1879]
[1880]
Underfull \hbox (badness 1867) in paragraph at lines 27102--27104
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 27118--27122
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1881]
[1882]
[1883]
[1884]
[1885]
[1886]
[1887]
[1888]
[1889]
[1890]
[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
Underfull \vbox (badness 10000) has occurred while \output is active
[1907]
Underfull \hbox (badness 3514) in paragraph at lines 28799--28804
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1908]
[1909]
[1910]
[1911]
[1912]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 29069--29075
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1913]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1914]
[1915]
[1916]
Underfull \hbox (badness 3514) in paragraph at lines 29302--29307
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1917]
[1918]
Underfull \hbox (badness 3514) in paragraph at lines 29389--29394
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1919]
Underfull \hbox (badness 3514) in paragraph at lines 29454--29459
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1920]
[1921]
Underfull \hbox (badness 3514) in paragraph at lines 29548--29553
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1922]
Underfull \hbox (badness 6691) in paragraph at lines 29640--29645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
Underfull \hbox (badness 4024) in paragraph at lines 30135--30138
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
Underfull \hbox (badness 5431) in paragraph at lines 30753--30755
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1941]
[1942]
[1943]
[1944]
Underfull \hbox (badness 5431) in paragraph at lines 30971--30974
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1945]
[1946]
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 31286--31290
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
Underfull \hbox (badness 1127) in paragraph at lines 31428--31431
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1953]
[1954]
[1955]
Underfull \hbox (badness 1616) in paragraph at lines 31646--31649
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1956]
[1957]
[1958]
[1959]
[1960]
[1961]
[1962]
[1963]
[1964]
[1965]
[1966]
[1967]
[1968]
[1969]
[1970]
[1971]
[1972]
[1973]
[1974]
[1975]
Underfull \hbox (badness 3557) in paragraph at lines 32900--32904
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1976]
[1977]
[1978]
Underfull \vbox (badness 10000) has occurred while \output is active
[1979]
[1980]
[1981]
Underfull \hbox (badness 1337) in paragraph at lines 33268--33272
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1982]
[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
[1990]
Underfull \hbox (badness 1337) in paragraph at lines 33816--33820
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1991]
[1992]
[1993]
[1994]
[1995]
[1996]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1997]
[1998]
[1999]
[2000]
[2001]) (./stats4-pkg.tex
[2002]
Chapter 11.

[2003]
[2004]
[2005]
Underfull \vbox (badness 10000) has occurred while \output is active
[2006]
Underfull \vbox (badness 10000) has occurred while \output is active
[2007]
[2008]
[2009]
[2010]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.506 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[2011]
[2012]
[2013]) (./tcltk-pkg.tex
[2014]
Chapter 12.

[2015]
[2016]
[2017]
[2018]
[2019]
[2020]
[2021]
Underfull \vbox (badness 10000) has occurred while \output is active
[2022]
Underfull \vbox (badness 10000) has occurred while \output is active
[2023]
Underfull \hbox (badness 1546) in paragraph at lines 687--694
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[2024]
[2025]
[2026]
[2027]
[2028]
Underfull \vbox (badness 10000) has occurred while \output is active
[2029]
[2030]
[2031]
[2032]
[2033]
[2034]
[2035]
[2036]) (./tools-pkg.tex
Chapter 13.

[2037]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2038]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2039]
[2040]
[2041]
Underfull \hbox (badness 1308) in paragraph at lines 326--339
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 326--339
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2042]
[2043]
Underfull \hbox (badness 3039) in paragraph at lines 429--431
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2044]
Underfull \hbox (badness 1142) in paragraph at lines 501--505
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2045]
[2046]
[2047]
[2048]
[2049]
[2050]
[2051] [2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
Underfull \hbox (badness 1014) in paragraph at lines 1346--1348
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1352--1354
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2059]
Underfull \hbox (badness 10000) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2060]
[2061]
[2062]
[2063]
[2064]
[2065]
Underfull \hbox (badness 10000) in paragraph at lines 1783--1794
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 
, []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR
AN_check_details() []\T1/ptm/m/n/10 and

[2066]
[2067]
Underfull \hbox (badness 4096) in paragraph at lines 1934--1942
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2068]
Underfull \hbox (badness 1082) in paragraph at lines 1944--1946
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2069]
[2070]
[2071]
[2072]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2073]
[2074]
[2075]
[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 3386) in paragraph at lines 2736--2739
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2081]
[2082]
[2083]
Underfull \hbox (badness 4096) in paragraph at lines 2899--2907
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2084]
[2085]
[2086]
[2087]
[2088]
[2089]
[2090]
[2091]
[2092]
[2093]
[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
Underfull \hbox (badness 1424) in paragraph at lines 3933--3935
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2100]
[2101]
[2102]
Underfull \hbox (badness 4792) in paragraph at lines 4106--4107
[]\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in

[2103]
[2104]
[2105]
[2106]
[2107]
[2108]
[2109]
[2110]
[2111]
[2112]
Underfull \hbox (badness 10000) in paragraph at lines 4717--4719
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2113]
[2114]
[2115]
[2116]
[2117]
[2118]
Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047
 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping")    # "a Small Fox is .."
     (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha
nge)% i.e. BUG[] 

[2119]
[2120]
[2121]
Underfull \hbox (badness 1796) in paragraph at lines 5256--5261
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=

[2122]
Underfull \hbox (badness 1838) in paragraph at lines 5342--5348
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 5342--5348
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
Underfull \hbox (badness 2197) in paragraph at lines 5693--5703
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2129]
Underfull \hbox (badness 1571) in paragraph at lines 5768--5772
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2130]
[2131]
[2132]
[2133]) (./utils-pkg.tex
[2134]
Chapter 14.

[2135]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',

[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
Underfull \hbox (badness 10000) in paragraph at lines 727--733
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 727--733
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2146]
[2147]
[2148]
Underfull \hbox (badness 3861) in paragraph at lines 942--947
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2149]
[2150]
[2151]
Underfull \hbox (badness 10000) in paragraph at lines 1146--1148
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2152]
[2153]
[2154]
Underfull \vbox (badness 3803) has occurred while \output is active
[2155]
[2156]
[2157]
[2158]
[2159]
[2160]
[2161]
Underfull \hbox (badness 3919) in paragraph at lines 1755--1758
[]\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer
red from the

Underfull \hbox (badness 1371) in paragraph at lines 1765--1767
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
Underfull \hbox (badness 2057) in paragraph at lines 2387--2389
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2172]
[2173]
Underfull \hbox (badness 2150) in paragraph at lines 2473--2480
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2473--2480
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2174]
[2175]
[2176]
[2177]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2756 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2178]
[2179]
[2180]
[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
[2195]
[2196]
[2197]
[2198]
Underfull \hbox (badness 6842) in paragraph at lines 4074--4079
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2199]
Underfull \hbox (badness 1430) in paragraph at lines 4156--4160
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2200]
Underfull \hbox (badness 1184) in paragraph at lines 4232--4248
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2201]
[2202]
Underfull \hbox (badness 10000) in paragraph at lines 4382--4384
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2203]
[2204]
[2205]
[2206]
[2207]
[2208]
[2209]
[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
[2216]
[2217]
[2218]
[2219]
[2220]
[2221]
[2222]
[2223]
Underfull \hbox (badness 1622) in paragraph at lines 5684--5688
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2224]
[2225]
[2226]
[2227]
[2228]
[2229]
Underfull \hbox (badness 1448) in paragraph at lines 6069--6074
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2230]
[2231]
[2232]
[2233]
[2234]
[2235]
[2236]
[2237]
Underfull \hbox (badness 1371) in paragraph at lines 6629--6631
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2238]
[2239]
Underfull \hbox (badness 1502) in paragraph at lines 6718--6724
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6718--6724
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2240]
[2241]
[2242]
Underfull \hbox (badness 10000) in paragraph at lines 6904--6913
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6904--6913
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2243]
Underfull \hbox (badness 2150) in paragraph at lines 6967--6970
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2244]
[2245]
Underfull \hbox (badness 3118) in paragraph at lines 7105--7107
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2246]
[2247]
Underfull \hbox (badness 1325) in paragraph at lines 7283--7287
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2248]
[2249]
Underfull \hbox (badness 1424) in paragraph at lines 7375--7378
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2250]
Underfull \hbox (badness 3219) in paragraph at lines 7457--7464
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7457--7464
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

Underfull \hbox (badness 1629) in paragraph at lines 7470--7472
[]\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from 
[][]$\T1/zi4/m/it/10 https : / / CRAN .

[2251]
Underfull \hbox (badness 1024) in paragraph at lines 7586--7589
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will

[2252]
Underfull \hbox (badness 10000) in paragraph at lines 7620--7625
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2253]
Underfull \hbox (badness 5133) in paragraph at lines 7685--7689
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2254]
[2255]
[2256]
[2257]
[2258]
[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
Underfull \hbox (badness 10000) in paragraph at lines 8356--8358
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2265]
[2266]
[2267]
[2268]
[2269]
[2270]
[2271]
[2272] [2273]
[2274]
Underfull \hbox (badness 3690) in paragraph at lines 8992--8995
[]\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in
g[][][] for the pack-age

[2275]
[2276]
[2277]
Underfull \hbox (badness 2310) in paragraph at lines 9145--9150
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
[2284]
[2285]
[2286]
Underfull \hbox (badness 1248) in paragraph at lines 9725--9729
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2287]
[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 2600) in paragraph at lines 10024--10027
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2292]
[2293]
[2294]
[2295]
[2296]
[2297]
[2298]
[2299]
[2300]
Underfull \hbox (badness 1097) in paragraph at lines 10662--10665
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2301]
[2302]
Underfull \hbox (badness 3000) in paragraph at lines 10798--10803
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2303]
[2304]
[2305]
[2306]
[2307]
[2308]
[2309]
[2310]
[2311]
Underfull \hbox (badness 2134) in paragraph at lines 11395--11400
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2312]
Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2313]
[2314]
[2315]
[2316]
[2317]
[2318]
[2319]
[2320]
Underfull \hbox (badness 6110) in paragraph at lines 11951--11954
\T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki
pedia . org / w / index . php ? title = Roman _ numerals &

[2321]
[2322]
[2323]
[2324]
[2325]
[2326]
[2327]
Underfull \hbox (badness 4060) in paragraph at lines 12394--12397
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2328]
[2329]
[2330]
[2331]
Underfull \hbox (badness 2150) in paragraph at lines 12673--12675
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /

[2332]
[2333]
Underfull \hbox (badness 5832) in paragraph at lines 12762--12767
[]\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/
it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/
m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc[]\T1/ptm/m/n/10 ,

[2334]
[2335]
Underfull \vbox (badness 3803) has occurred while \output is active
[2336]
[2337]
Underfull \hbox (badness 10000) in paragraph at lines 13038--13046
[]\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/
m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo
c[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13059--13063
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

[2338]
Underfull \hbox (badness 10000) in paragraph at lines 13092--13098
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

Underfull \hbox (badness 2762) in paragraph at lines 13107--13113
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2339]
[2340]
Underfull \hbox (badness 1009) in paragraph at lines 13296--13308
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

[2341]
Underfull \hbox (badness 4779) in paragraph at lines 13366--13368
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]
Underfull \hbox (badness 3780) in paragraph at lines 13821--13827
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2349]
Underfull \hbox (badness 2635) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2350]
[2351]
[2352]
Underfull \hbox (badness 2302) in paragraph at lines 14048--14050
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2353]
[2354]
[2355]
[2356]
[2357]
Underfull \hbox (badness 4441) in paragraph at lines 14347--14352
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/it/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14356--14359
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2358]
[2359]
[2360]
[2361]
[2362]
[2363]
[2364]
Underfull \hbox (badness 2932) in paragraph at lines 14786--14793
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14786--14793
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2365]
[2366]
[2367]
[2368]
[2369]
[2370]
Underfull \hbox (badness 6510) in paragraph at lines 15194--15198
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

Underfull \hbox (badness 10000) in paragraph at lines 15201--15204
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 15201--15204
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2371]
[2372]
[2373]
[2374]
[2375]
[2376]
[2377]
[2378]
[2379]
[2380]
[2381]
Underfull \hbox (badness 10000) in paragraph at lines 15905--15910
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15905--15910
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15911--15913
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

[2382]
Underfull \hbox (badness 10000) in paragraph at lines 15975--15978
[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2383]
[2384]
[2385]
[2386]
[2387]
[2388]
[2389]
[2390]
[2391]
[2392]
[2393]
[2394]
[2395]
[2396]
[2397]
[2398]) (./fullrefman.ind

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]

[2432]

[2433]

[2434]

[2435]

[2436]

[2437]

[2438]

[2439]

[2440]

[2441]

[2442]

[2443]

[2444]

[2445]

[2446]

[2447]

[2448]

[2449]

[2450]

[2451]

[2452]

[2453]

[2454]

[2455]

[2456]

[2457]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10174--10176
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2458]

[2459]

[2460]

[2461]

[2462]

[2463]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11585--11587
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2464]

[2465]

[2466]

[2467]

[2468]

[2469]

[2470]

[2471]

[2472]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13466--13468
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13468--13470
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13470--13472
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 


[2473]

[2474]

[2475]

[2476]

[2477]

[2478]

[2479]

[2480]

[2481]

[2482]) (./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.


Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix.Rdash.class} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.MethodsList.Rdash.class} has been referenced bu
t does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pipe\\unhbox\040\\voidb@x\040\\unskip\040\040\\
ignorespaces\040operator} has been referenced but does not exist, replaced by a
 fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.xfig} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.defunct} has been referenced but doe
s not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/
helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a
.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2515 pages, 6877554 bytes).
Transcript written on fullrefman.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2024/06/29 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./fullrefman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-
dist/fonts/enc/dvips/base/8r.enc}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd)
[1{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30])
[31]
[32] (./base-pkg.tex
Chapter 1.

[1]
[2]
Underfull \hbox (badness 6252) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

Underfull \hbox (badness 10000) in paragraph at lines 150--158
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

Underfull \hbox (badness 4995) in paragraph at lines 150--158
[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,

[3]
[4]
[5]
Underfull \hbox (badness 1178) in paragraph at lines 338--341
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues

[6]
[7]
[8]
[9]
Underfull \hbox (badness 2556) in paragraph at lines 573--579
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',

[10]
[11]
[12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}]
[14]
[15]
[16]
[17]
[18]
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
[35]
[36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2303--2303
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 

[37]
[38]
[39]
[40]
[41]
[42]
Overfull \hbox (20.69484pt too wide) in paragraph at lines 2657--2657
 []\T1/zi4/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when  
\TS1/cmtt/m/n/9 `\T1/zi4/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 
`[] 

[43]
[44]
[45]
[46]
[47]
Underfull \hbox (badness 1721) in paragraph at lines 2977--2981
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,

[48]
[49]
[50]
[51]
[52]
[53]
[54]
Underfull \hbox (badness 2538) in paragraph at lines 3469--3472
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,

[55]
[56]
[57]
[58]
[59]
Underfull \vbox (badness 3803) has occurred while \output is active
[60]
[61]
[62]
[63]
[64]
[65]
[66]
[67]
Underfull \hbox (badness 10000) in paragraph at lines 4265--4267
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting

[68]
[69]
[70]
[71]
[72]
[73]
[74]
[75]
[76]
[77]
[78]
[79]
[80]
[81]
[82]
[83]
[84]
[85]
[86]
[87]
[88]
Underfull \hbox (badness 2521) in paragraph at lines 5623--5625
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by

[89]
[90]
[91]
[92]
[93]
[94]
[95]
[96]
[97]
[98]
[99]
[100]
[101]
[102]
[103]
[104]
[105]
[106]
[107]
[108]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6942--6942
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 

[109]
[110]
[111]
[112]
[113]
[114]
[115]
[116]
[117]
Underfull \hbox (badness 2253) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/zi4/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 zstdfile[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 unz[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 socketConn
ection[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 2846) in paragraph at lines 7557--7562
[]\T1/zi4/m/n/10 socketAccept []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 serverSocke
t []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject which in-her-its from class

[118]
[119]
[120]
[121]
Underfull \hbox (badness 2261) in paragraph at lines 7873--7878
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /

[122]
[123]
[124]
Underfull \vbox (badness 10000) has occurred while \output is active
[125]
[126]
[127]
[128]
[129]
[130]
[131]
[132]
[133]
Underfull \hbox (badness 2096) in paragraph at lines 8618--8622
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .

[134]
[135]
Underfull \hbox (badness 2351) in paragraph at lines 8734--8737
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,

[136]
[137]
[138]
[139]
[140]
Underfull \hbox (badness 4479) in paragraph at lines 9051--9062
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),

[141]
[142]
[143]
[144]
[145]
[146]
Underfull \hbox (badness 2698) in paragraph at lines 9465--9471
[]\T1/ptm/m/n/10 Further im-ple-mented meth-ods com-prise [][][]\T1/zi4/m/n/10 
mean[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 summary[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 unique[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.
finite[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 length<-[][][][]\T1/ptm/m/n
/10 ,

Underfull \hbox (badness 1629) in paragraph at lines 9492--9504
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9492--9504
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31

[147]
[148]
[149]
Underfull \hbox (badness 3657) in paragraph at lines 9692--9694
[][][]\T1/zi4/m/n/10 weekdays[][][][]\T1/ptm/m/n/10 , for con-ve-nience ex-trac
-tion func-tions (also in-clud-ing []\T1/zi4/m/n/10 months()[]\T1/ptm/m/n/10 , 
[]\T1/zi4/m/n/10 quarters()[]\T1/ptm/m/n/10 ,

[150]
[151]
[152]
[153]
[154]
[155]
[156]
[157]
[158]
[159]
Underfull \hbox (badness 1178) in paragraph at lines 10351--10355
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-

[160]
[161]
[162]
[163]
[164]
[165]
[166]
[167]
[168]
[169]
[170]
[171]
[172]
[173]
[174]
[175]
[176]
[177]
[178]
[179]
[180]
[181]
[182]
[183]
[184]
[185]
[186]
[187]
[188]
[189]
[190]
[191]
[192]
[193]
[194]
[195]
[196]
Underfull \hbox (badness 2744) in paragraph at lines 12723--12725
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see

[197]
[198]
[199]
[200]
[201]
[202]
[203]
[204]
[205]
[206]
[207]
[208]
[209]
[210]
[211]
[212]
[213]
[214]
[215]
[216]
[217]
[218]
[219]
[220]
[221]
[222]
[223]
[224]
[225]
[226]
[227]
[228]
Underfull \hbox (badness 2253) in paragraph at lines 14943--14945
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see

[229]
Underfull \hbox (badness 1490) in paragraph at lines 14978--14981
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the

[230]
Underfull \hbox (badness 1565) in paragraph at lines 15064--15068
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and

[231]
Underfull \hbox (badness 4927) in paragraph at lines 15115--15117
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =

[232]
[233]
Underfull \hbox (badness 1466) in paragraph at lines 15266--15269
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and

[234]
[235]
Underfull \hbox (badness 10000) in paragraph at lines 15397--15401
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15408--15411
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /

[236]
[237]
[238]
[239]
[240]
Underfull \hbox (badness 3965) in paragraph at lines 15712--15716
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,

[241]
[242]
[243]
[244]
[245]
[246]
[247]
[248]
Underfull \hbox (badness 5260) in paragraph at lines 16225--16225
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,

[249]
[250]
[251]
[252]
[253]
Underfull \hbox (badness 4429) in paragraph at lines 16517--16520
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for

[254]
[255]
Underfull \hbox (badness 10000) in paragraph at lines 16624--16626
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,

[256]
Underfull \hbox (badness 2035) in paragraph at lines 16697--16701
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within

[257]
Underfull \vbox (badness 10000) has occurred while \output is active
[258]
[259]
[260]
[261]
[262]
[263]
[264]
[265]
[266]
Underfull \hbox (badness 2452) in paragraph at lines 17323--17327
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17323--17327
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and

[267]
[268]
[269]
Underfull \hbox (badness 1092) in paragraph at lines 17516--17521
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing

[270]
[271]
[272]
Underfull \hbox (badness 6741) in paragraph at lines 17769--17773
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,

[273]
[274]
[275]
[276]
[277]
[278]
[279]
[280]
[281]
[282]
[283]
[284]
Underfull \vbox (badness 10000) has occurred while \output is active
[285]
[286]
[287]
[288]
[289]
[290]
[291]
[292]
[293]
[294]
[295]
Underfull \hbox (badness 1769) in paragraph at lines 19283--19286
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor

[296]
[297]
[298]
[299]
[300]
Underfull \hbox (badness 10000) in paragraph at lines 19592--19594
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19598--19607
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /

[301]
[302]
[303]
[304]
[305]
[306]
[307]
[308]
[309]
Underfull \hbox (badness 1442) in paragraph at lines 20210--20212
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see

[310]
[311]
Underfull \hbox (badness 2452) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 20306--20332
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]

[312]
[313]
[314]
[315]
[316]
[317]
Underfull \hbox (badness 1248) in paragraph at lines 20704--20707
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,

[318]
[319]
[320]
[321]
[322]
Underfull \hbox (badness 4739) in paragraph at lines 20975--20977
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see

[323]
[324]
[325]
[326]
[327]
Underfull \vbox (badness 3803) has occurred while \output is active
[328]
[329]
[330]
[331]
[332]
[333]
[334]
[335]
[336]
[337]
[338]
[339]
[340]
[341]
Underfull \hbox (badness 2469) in paragraph at lines 22168--22173
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and

[342]
[343]
Underfull \hbox (badness 1675) in paragraph at lines 22255--22264
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 22265--22278
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 22313--22316
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 22313--22316
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by

[344]
[345]
Underfull \hbox (badness 1014) in paragraph at lines 22448--22453
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if

[346]
[347]
[348]
[349]
[350]
[351]
[352]
[353]
[354]
[355]
[356]
[357]
[358]
Underfull \hbox (badness 1264) in paragraph at lines 23309--23317
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:

[359]
Underfull \hbox (badness 4441) in paragraph at lines 23344--23347
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,

[360]
[361]
[362]
[363]
[364]
[365]
[366]
[367]
[368]
[369]
[370]
[371]
Underfull \hbox (badness 5231) in paragraph at lines 24169--24171
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==

[372]
[373]
[374]
[375]
[376]
[377]
[378]
[379]
[380]
[381]
[382]
[383]
[384]
[385]
[386]
[387]
[388]
[389]
[390]
Underfull \hbox (badness 6380) in paragraph at lines 25335--25341
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 25335--25341
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]

[391]
[392]
[393]
[394]
[395]
[396]
[397]
[398]
Underfull \hbox (badness 2790) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25848--25851
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by

[399]
[400]
[401]
[402]
[403]
Underfull \hbox (badness 1194) in paragraph at lines 26180--26183
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls

[404]
[405]
[406]
Underfull \hbox (badness 2368) in paragraph at lines 26390--26396
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,

[407]
[408]
[409]
[410]
[411]
[412]
Underfull \hbox (badness 10000) in paragraph at lines 26783--26786
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by

[413]
[414]
[415]
[416]
[417]
[418]
[419]
[420]
[421]
[422]
Underfull \hbox (badness 10000) in paragraph at lines 27435--27437
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%

[423]
[424]
[425]
[426]
[427]
[428]
[429]
Underfull \hbox (badness 2443) in paragraph at lines 27928--27936
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For

[430]
[431]
[432]
[433]
[434]
[435]
[436]
Underfull \hbox (badness 1881) in paragraph at lines 28360--28363
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 28385--28387
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see


[437]
[438]
Underfull \hbox (badness 2142) in paragraph at lines 28532--28536
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

[439]
Underfull \hbox (badness 1968) in paragraph at lines 28589--28594
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

[440]
[441]
[442]
Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28897--28903
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28910--28913
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

[443]
Underfull \hbox (badness 2689) in paragraph at lines 28936--28938
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28984--28989
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly

Underfull \hbox (badness 2529) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28990--29001
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 29002--29005
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and

[444]
[445]
[446]
[447]
[448]
[449]
Underfull \hbox (badness 10000) in paragraph at lines 29420--29424
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],

[450]
[451]
[452]
Underfull \hbox (badness 10000) in paragraph at lines 29569--29572
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,

[453]
Underfull \hbox (badness 7925) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29651--29655
[]\T1/zi4/m/n/10 parse(text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is 
al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]
\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29656--29665
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to []\T1/zi4/m/n/10 parse(text = s,

[454]
[455]
[456]
[457]
[458]
[459]
[460]
[461]
[462]
[463]
[464]
[465]
[466]
[467]
[468]
[469]
Underfull \hbox (badness 2726) in paragraph at lines 30692--30695
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see

[470]
[471]
[472]
[473]
[474]
[475]
[476]
[477]
[478]
[479]
[480]
[481]
[482]
[483]
[484]
[485]
[486]
[487]
[488]
Underfull \vbox (badness 3803) has occurred while \output is active
[489]
[490]
[491]
[492]
[493]
[494]
[495]
[496]
[497]
Underfull \hbox (badness 1533) in paragraph at lines 32526--32529
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the

[498]
[499]
[500]
Underfull \hbox (badness 1163) in paragraph at lines 32698--32709
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in

[501]
[502]
[503]
[504]
[505]
[506]
[507]
[508]
[509]
[510]
[511]
[512]
[513]
[514]
[515]
[516]
[517]
[518]
[519]
[520]
[521]
[522]
[523]
[524]
[525]
[526]
Underfull \hbox (badness 10000) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 34382--34386
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 34403--34405
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 34406--34410
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /

[527]
[528]
Underfull \vbox (badness 10000) has occurred while \output is active
[529]
[530]
[531]
[532]
[533]
[534]
[535]
[536]
Underfull \hbox (badness 1655) in paragraph at lines 35014--35016
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for

[537]
[538]
[539]
[540]
[541]
[542]
[543]
[544]
[545]
[546]
[547]
[548]
[549]
[550]
[551]
[552]
[553]
[554]
[555]
Underfull \hbox (badness 2261) in paragraph at lines 36229--36234
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if

[556]
[557]
[558]
[559]
[560]
[561]
[562]
[563]
[564]
[565]
[566]
[567]
[568]
[569]
[570]
[571]
[572]
Underfull \hbox (badness 3668) in paragraph at lines 37332--37336
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with

[573]
Underfull \hbox (badness 10000) in paragraph at lines 37423--37434
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?

[574]
[575]
[576]
[577]
[578]
[579]
[580]
[581]
[582]
[583]
[584]
[585]
[586]
[587]
[588]
[589]
[590]
[591]
[592]
[593]
Underfull \vbox (badness 3803) has occurred while \output is active
[594]
[595]
[596]
[597]
[598]
[599]
Underfull \hbox (badness 10000) in paragraph at lines 39086--39088
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for

[600]
[601]
[602]
[603]
[604]
[605]
Underfull \hbox (badness 2913) in paragraph at lines 39504--39508
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by

[606]
[607]
[608]
[609]
Underfull \hbox (badness 1072) in paragraph at lines 39755--39759
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 39760--39764
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39800--39806
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

[610]
Underfull \hbox (badness 3009) in paragraph at lines 39815--39822
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39815--39822
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from

[611]
[612]
[613]
Underfull \hbox (badness 2644) in paragraph at lines 40050--40054
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an


[614]
[615]
[616]
[617]
[618]
[619]
[620]
[621]
[622]
[623]
[624]
[625]
[626]
[627]
[628]
[629]
[630]
[631]
[632]
[633]
[634]
[635]
[636]
[637]
[638]
Underfull \hbox (badness 4144) in paragraph at lines 41632--41640
[]\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][
][]\T1/zi4/m/n/10 format[][][]() []\T1/ptm/m/n/10 (for []\T1/zi4/m/n/10 summary
.data.frame[]\T1/ptm/m/n/10 ). In

Underfull \hbox (badness 1158) in paragraph at lines 41642--41644
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault

[639]
[640]
[641]
[642]
[643]
[644]
[645] [646]
[647]
[648]
[649]
Underfull \hbox (badness 1137) in paragraph at lines 42291--42297
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

Underfull \hbox (badness 4967) in paragraph at lines 42309--42314
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple

[650]
[651]
Underfull \hbox (badness 1616) in paragraph at lines 42432--42437
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions

[652]
[653]
[654]
[655]
Underfull \vbox (badness 3803) has occurred while \output is active
[656]
[657]
[658]
[659]
[660]
Underfull \hbox (badness 1472) in paragraph at lines 42980--42983
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see

[661]
[662]
[663]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 43192.


[664]
[665]
[666]
[667]
[668]
[669]
[670]
[671]
[672]
[673]
[674]
[675]
Underfull \hbox (badness 10000) in paragraph at lines 43937--43941
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >

[676]
[677]
[678]
[679]
[680]
[681]
[682]
[683]
[684]
[685]
[686]
[687]
[688]
[689]
[690]
[691]
[692]
[693]
Underfull \hbox (badness 10000) in paragraph at lines 45135--45138
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /

[694]
[695]
[696]
[697]
[698]
[699]
Underfull \vbox (badness 10000) has occurred while \output is active
[700]
[701]
[702]
[703]
[704]
[705]
[706]
[707]
Underfull \hbox (badness 1990) in paragraph at lines 46056--46064
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 46056--46064
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less

[708]
[709]
[710]
[711]
[712]
[713]
[714]
[715]
[716]
[717]
[718]
[719]
[720]
[721]
[722]
[723]
[724]
[725]
[726]
[727]
[728]
[729]
Underfull \hbox (badness 1014) in paragraph at lines 47504--47507
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if

[730]
[731]
Underfull \hbox (badness 2401) in paragraph at lines 47638--47642
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a

[732]
[733]
Underfull \hbox (badness 3492) in paragraph at lines 47765--47767
[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,

[734]
[735]
Underfull \hbox (badness 2111) in paragraph at lines 47851--47856
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.

[736]
[737]
[738]
[739]
[740]
[741]
[742]
[743]
[744]
[745]
Underfull \hbox (badness 5417) in paragraph at lines 48517--48521
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas

[746]
Underfull \hbox (badness 10000) in paragraph at lines 48578--48582
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named

[747]) (./compiler-pkg.tex
[748]
Chapter 2.

[749]
[750]
[751]
[752]) (./datasets-pkg.tex
Chapter 3.

[753]
Underfull \hbox (badness 1199) in paragraph at lines 55--59
[]\T1/ptm/m/n/10 Bartholomew DJ (1987). \T1/ptm/m/it/10 La-tent Vari-able Mod-e
ls and Fac-tor Anal-y-sis\T1/ptm/m/n/10 . Grif-fin. ISBN

[754]
[755]
[756]
[757] [758]
[759]
[760]
[761]
[762]
[763]
[764]
[765]
[766]
[767]
[768]
[769]
[770]
[771]
[772]
[773]
[774]
[775]
[776]
[777]
[778]
[779]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1704--1704
 []\T1/zi4/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co
l = adjustcolor("thistle", 1/3))[] 

[780]
[781]
[782]
[783]
[784]
[785]
[786]
[787]
[788]
[789]
[790]
[791]
[792]
[793]
[794]
[795]
[796]
[797]
[798]
[799]
[800]
[801]
[802]
[803]
[804]
[805]
[806]
[807]
[808]
[809]
[810]
[811]
[812]
[813]
[814]
[815]
[816]
Overfull \hbox (2.27475pt too wide) in paragraph at lines 3940--3940
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 

[817]
[818]
[819]
[820]
Underfull \hbox (badness 10000) in paragraph at lines 4210--4216
[]\T1/ptm/m/n/10 Files for all 182 dis-tricts in 1888 and other years have been
 avail-able at

[821]
[822]
[823]
[824]
[825]
[826]
[827]
[828]
[829]
[830]
[831]
[832]
[833]
[834]
[835]
[836]
[837]
[838]
[839]
[840]) (./grDevices-pkg.tex
Chapter 4.

[841]
[842]
[843]
[844]
[845]
Underfull \hbox (badness 2221) in paragraph at lines 284--288
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

Underfull \hbox (badness 10000) in paragraph at lines 299--304
[]\T1/ptm/m/n/10 Apart from that, []\T1/zi4/m/sl/10 axisTicks() []\T1/ptm/m/n/1
0 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1/ptm/m/n/1
0 in

[846]
[847]
[848]
[849]
[850]
[851]
[852]
[853]
[854]
[855]
Underfull \hbox (badness 1424) in paragraph at lines 925--927
[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as

[856]
Underfull \vbox (badness 3803) has occurred while \output is active
[857]
[858]
[859]
[860]
Underfull \hbox (badness 5175) in paragraph at lines 1253--1255
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in

[861]
[862]
Underfull \hbox (badness 2512) in paragraph at lines 1372--1374
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /

[863]
[864]
[865]
[866]
[867]
Underfull \hbox (badness 1490) in paragraph at lines 1672--1677
\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

Underfull \hbox (badness 3302) in paragraph at lines 1685--1689
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of

[868]
[869]
[870]
[871]
[872]
[873]
[874]
Underfull \hbox (badness 1325) in paragraph at lines 2100--2110
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,

[875]
Underfull \hbox (badness 10000) in paragraph at lines 2212--2214
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of

[876]
[877]
[878]
Underfull \hbox (badness 6758) in paragraph at lines 2400--2403
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are

[879]
[880]
[881]
[882]
[883]
[884]
Underfull \hbox (badness 1694) in paragraph at lines 2759--2762
[]\T1/ptm/m/n/10 Axis co-or-di-nate set-tings for vari-able fonts. Ei-ther []\T
1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 , or a call to

[885]
[886]
[887]
[888]
[889]
[890]
Underfull \hbox (badness 10000) in paragraph at lines 3171--3172


[891]
[892]
[893]
[894]
[895]
[896]
[897]
[898]
[899]
[900]
[901]
[902]
Underfull \vbox (badness 3803) has occurred while \output is active
[903]
[904]
[905]
Underfull \hbox (badness 1484) in paragraph at lines 4137--4140
\T1/ptm/m/n/10 Ac-cessed 2019-03-26, [][]$\T1/zi4/m/sl/10 https : / / en . wiki
pedia . org / w / index . php ? title = HCL _ color _ space &

[906]
Underfull \vbox (badness 10000) has occurred while \output is active
[907]
[908]
[909]
[910]
Underfull \hbox (badness 1418) in paragraph at lines 4463--4470
\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,

[911]
[912]
[913]
[914]
Underfull \hbox (badness 1152) in paragraph at lines 4750--4757
[]\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pointsize[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 pagecentre[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 col
ormodel[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 useDingbats[]\T1/ptm/m/n/10 ,

[915]
[916]
[917]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4933 \aliasA{symbol}{plotmath}{symbol}
                                         [918] [919]
[920]
[921]
Underfull \vbox (badness 3803) has occurred while \output is active
[922]
[923]
Underfull \hbox (badness 1584) in paragraph at lines 5325--5327
[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

Underfull \hbox (badness 1067) in paragraph at lines 5329--5336
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-

[924]
[925]
[926]
[927]
Underfull \hbox (badness 1377) in paragraph at lines 5631--5636
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues

[928]
[929]
Underfull \hbox (badness 1377) in paragraph at lines 5735--5740
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and

[930]
Underfull \hbox (badness 7344) in paragraph at lines 5804--5806
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso

[931]
[932]
Underfull \hbox (badness 2035) in paragraph at lines 5944--5953
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 5944--5953
[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,

[933]
Underfull \hbox (badness 10000) in paragraph at lines 6010--6015
[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /

[934]
[935]
[936]
Underfull \hbox (badness 1546) in paragraph at lines 6151--6159
[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,

[937]
[938]
[939]
[940]
[941]
[942]
Underfull \hbox (badness 3343) in paragraph at lines 6595--6598
[]\T1/ptm/m/n/10 Murrell P, Ooms J, Al-laire JJ (2015). ``Record-ing and Re-pla
y-ing the Graph-ics En-

Underfull \hbox (badness 7740) in paragraph at lines 6595--6598
\T1/ptm/m/n/10 gine Dis-play List.'' [][]$\T1/zi4/m/sl/10 https : / / stattech 
. wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 /

[943]
[944]
Underfull \hbox (badness 10000) in paragraph at lines 6699--6702
[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space

[945]
[946]
[947]
[948]
Overfull \hbox (9.73488pt too wide) in paragraph at lines 6936--6936
 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 

[949]
[950]
[951]
[952]
[953]
[954]
[955]
[956]
[957]
[958]
Underfull \hbox (badness 1189) in paragraph at lines 7565--7567
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of

[959]
Underfull \hbox (badness 10000) in paragraph at lines 7670--7672
[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and

[960]
[961]
[962]
[963]
[964]
[965]
[966]
[967]
[968]) (./graphics-pkg.tex
Chapter 5.

[969]
[970]
[971]
[972]
[973]
[974]
[975]
[976]
[977]
[978]
[979]
Underfull \vbox (badness 3803) has occurred while \output is active
[980]
[981]
[982]
[983]
[984]
[985]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 1071--1071
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 

[986]
Underfull \vbox (badness 10000) has occurred while \output is active
[987]
[988]
[989]
[990]
[991]
[992]
Underfull \hbox (badness 4634) in paragraph at lines 1459--1462
[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,

[993]
[994]
[995]
[996]
[997]
[998]
[999]
[1000]
[1001]
Underfull \vbox (badness 3803) has occurred while \output is active
[1002]
[1003]
[1004]
[1005]
[1006]
[1007]
[1008]
Underfull \hbox (badness 1728) in paragraph at lines 2457--2459
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also

[1009]
[1010]
Underfull \hbox (badness 1009) in paragraph at lines 2555--2562
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to

[1011]
[1012]
[1013]
[1014]
[1015]
[1016]
[1017]
[1018]
[1019]
[1020]
[1021]
[1022]
[1023]
[1024]
[1025]
[1026]
[1027]
[1028]
[1029]
[1030]
[1031]
[1032]
[1033]
[1034]
Underfull \vbox (badness 10000) has occurred while \output is active
[1035]
[1036]
[1037]
[1038]
[1039]
[1040]
Underfull \vbox (badness 3803) has occurred while \output is active
[1041]
[1042]
[1043]
[1044]
[1045]
[1046]
[1047]
Underfull \hbox (badness 3229) in paragraph at lines 4852--4857
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see

[1048]
[1049]
[1050]
[1051]
[1052]
Underfull \hbox (badness 1107) in paragraph at lines 5352--5358
[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),

[1053]
[1054]
Underfull \hbox (badness 10000) in paragraph at lines 5481--5484


[1055 </build/r-base-4.6.0/library/graphics/help/figures/mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5542--5544


Underfull \vbox (badness 10000) has occurred while \output is active
[1056]
[1057 </build/r-base-4.6.0/library/graphics/help/figures/oma.pdf>]
[1058]
[1059]
[1060]
[1061]
[1062]
[1063]
[1064]
[1065]
[1066]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6231 \aliasA{plot}{plot.default}{plot}
                                        
[1067]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 logical, rel-e-vant only when at least one of []\T1/zi4/m/sl/1
0 xlim []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 ylim []\T1/ptm/m/n/10 are

Underfull \hbox (badness 10000) in paragraph at lines 6276--6281
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 and hence cor-re-spond-ing axis lim-its
 are com-puted from

[1068]
[1069]
[1070]
[1071]
[1072]
[1073]
[1074]
[1075]
[1076]
[1077]
[1078]
[1079]
[1080]
[1081]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 7167--7168
[][] 

[1082 </build/r-base-4.6.0/library/graphics/help/figures/pch.pdf>]
[1083]
Underfull \vbox (badness 10000) has occurred while \output is active
[1084]
[1085]
[1086]
[1087]
[1088]
[1089]
[1090]
[1091]
[1092]
[1093]
[1094]
[1095]
[1096]
[1097]
[1098]
[1099]
[1100]
[1101]
[1102]
[1103]
[1104]
[1105]
[1106]
[1107]
[1108]
[1109]
[1110]
[1111]
[1112]
[1113]
[1114]
[1115]
[1116]
Underfull \hbox (badness 4954) in paragraph at lines 9309--9311
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

Underfull \hbox (badness 1019) in paragraph at lines 9311--9313
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",

[1117]
[1118]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9392 \HeaderA{units}{Graphical Units}{units}
                                              
[1119]
[1120]
[1121]
[1122]) (./grid-pkg.tex
Chapter 6.

[1123]
[1124]
[1125]
[1126]
[1127]
[1128]
[1129]
[1130]
[1131]
Underfull \hbox (badness 2680) in paragraph at lines 552--555
[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of

[1132]
[1133]
[1134]
[1135]
[1136] [1137]
[1138]
[1139]
[1140]
[1141]
[1142]
Underfull \hbox (badness 4279) in paragraph at lines 1191--1200
[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,

[1143]
[1144]
[1145]
[1146]
[1147]
[1148]
[1149]
[1150]
[1151]
[1152]
[1153]
[1154]
[1155]
[1156]
[1157]
[1158]
[1159]
[1160]
[1161]
[1162]
[1163]
[1164]
[1165]
[1166]
[1167]
[1168]
[1169]
[1170]
[1171]
[1172]
[1173]
[1174]
Underfull \hbox (badness 10000) in paragraph at lines 3106--3108
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see

[1175]
[1176]
[1177]
[1178]
[1179]
[1180]
[1181]
[1182]
[1183]
[1184]
[1185]
[1186]
[1187]
[1188]
[1189]
[1190]
Underfull \vbox (badness 10000) has occurred while \output is active
[1191]
[1192]
[1193]
[1194]
[1195]
[1196]
[1197]
[1198]
[1199]
[1200]
[1201]
[1202]
[1203]
[1204]
Underfull \hbox (badness 1067) in paragraph at lines 4845--4848
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only

[1205]
[1206]
[1207]
[1208]
[1209]
[1210]
Underfull \hbox (badness 7256) in paragraph at lines 5196--5198
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by

[1211]
[1212]
[1213]
[1214]
[1215]
[1216]
[1217]
Underfull \hbox (badness 2142) in paragraph at lines 5652--5656
[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or

[1218]
[1219]
Underfull \hbox (badness 4699) in paragraph at lines 5734--5739
[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a

[1220]
[1221]
[1222]
[1223]
[1224]
[1225]
[1226]
[1227]
[1228]
[1229]
[1230]
[1231]
[1232]
[1233]
[1234]
[1235]
[1236]
[1237]
[1238]
[1239]
[1240]
[1241]
[1242]
[1243]
[1244]
[1245]
[1246]
[1247]
[1248]
[1249]
[1250]
[1251]) (./methods-pkg.tex
[1252]
Chapter 7.

[1253]
[1254]
[1255]
[1256]
[1257]
[1258]
[1259]
[1260]
Underfull \vbox (badness 3803) has occurred while \output is active
[1261]
Underfull \vbox (badness 10000) has occurred while \output is active
[1262]
[1263]
[1264]
[1265]
[1266]
[1267]
[1268]
[1269]
[1270]
[1271]
Underfull \hbox (badness 2237) in paragraph at lines 1393--1395
[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class

[1272]
[1273]
[1274]
[1275]
[1276]
[1277]
[1278]
[1279]
[1280]
Underfull \hbox (badness 10000) in paragraph at lines 1995--2000
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

Underfull \hbox (badness 1038) in paragraph at lines 1995--2000
\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the

[1281]
[1282]
[1283]
Underfull \hbox (badness 2213) in paragraph at lines 2227--2232
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =

[1284]
[1285]
[1286]
[1287]
[1288]
Underfull \hbox (badness 10000) in paragraph at lines 2592--2595
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class

[1289]
[1290]
Underfull \hbox (badness 1132) in paragraph at lines 2732--2736
[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in

[1291]
Underfull \hbox (badness 1033) in paragraph at lines 2768--2773
\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the

[1292]
[1293]
[1294]
[1295]
[1296]
[1297]
[1298]
Underfull \hbox (badness 1102) in paragraph at lines 3331--3333
[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous

[1299]
[1300]
[1301]
[1302]
[1303]
[1304]
Underfull \hbox (badness 10000) in paragraph at lines 3668--3677
[]\T1/ptm/m/n/10 The

[1305]
Underfull \hbox (badness 10000) in paragraph at lines 3788--3789
[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",

[1306]
Underfull \hbox (badness 10000) in paragraph at lines 3872--3873
[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =

[1307]
[1308]
[1309]
[1310]
[1311]
[1312]
[1313]
[1314]
[1315]
[1316]
Underfull \hbox (badness 1769) in paragraph at lines 4515--4521
[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


Underfull \hbox (badness 1939) in paragraph at lines 4515--4521
[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by

[1317]
[1318]
[1319]
Underfull \vbox (badness 5681) has occurred while \output is active
[1320]
[1321]
[1322]
[1323]
Underfull \vbox (badness 1681) has occurred while \output is active
[1324]
[1325]
Underfull \vbox (badness 10000) has occurred while \output is active
[1326]
Underfull \vbox (badness 10000) has occurred while \output is active
[1327]
[1328]
[1329]
Underfull \hbox (badness 4036) in paragraph at lines 5424--5427
[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a

[1330]
Underfull \hbox (badness 3803) in paragraph at lines 5497--5499
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to

[1331]
[1332]
[1333]
[1334]
Underfull \hbox (badness 1087) in paragraph at lines 5731--5736
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing

[1335]
[1336]
[1337]
[1338]
[1339]
[1340]
[1341]
[1342]
Underfull \hbox (badness 1675) in paragraph at lines 6448--6454
[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class

[1343]
[1344]
[1345]
[1346]
Underfull \vbox (badness 10000) has occurred while \output is active
[1347]
[1348]
[1349]
[1350]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has 
been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6976 \aliasA{S4}{S3Part}{S4}
                              
[1351]
[1352]
[1353]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7236 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Math}{S4groupGeneric}{Math}
                                          
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.matrixOps
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7239 ...sA{matrixOps}{S4groupGeneric}{matrixOps}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7240 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary})
 has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7241 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
[1354]
Underfull \hbox (badness 2050) in paragraph at lines 7303--7307
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing

[1355]
[1356]
[1357]
Underfull \hbox (badness 1286) in paragraph at lines 7496--7498
[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally

[1358]
[1359]
[1360]
[1361]
[1362]
[1363]
[1364]
[1365]
[1366]
[1367]
[1368]
[1369]
[1370]
[1371]
[1372]
[1373]
[1374]
[1375]
[1376]
[1377]
[1378]
[1379]
[1380]
[1381]
[1382]
[1383]
[1384]
[1385]
[1386]
[1387]
[1388]
[1389]
[1390]
[1391]
[1392]
[1393]
[1394]
[1395]
[1396]
[1397]
[1398]
[1399]
Underfull \hbox (badness 2197) in paragraph at lines 10545--10548
[]\T1/ptm/m/n/10 Chambers JM (2009). ``Class In-her-i-tance in R.'' [][]$\T1/zi
4/m/sl/10 https : / / johnmchambers . su . domains /

[1400]
Underfull \hbox (badness 1852) in paragraph at lines 10623--10627
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,

[1401]
[1402]
[1403]
[1404]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see

[1405]
[1406]
[1407]
[1408]
[1409]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.

[1410]
[1411]
[1412]
[1413]
[1414]
[1415]
[1416]
[1417]
[1418]
[1419]
[1420]
[1421]
[1422]
[1423]
[1424]
[1425]
[1426]
Underfull \hbox (badness 3386) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the

[1427]
[1428]
[1429]) (./splines-pkg.tex
[1430]
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables

[1431]
[1432]
[1433]
[1434]
[1435]
[1436]
[1437]
[1438]
[1439]
[1440]
[1441]
[1442]
[1443]
[1444]
[1445]
[1446]) (./stats-pkg.tex
Chapter 10.

[1447]
[1448]
[1449]
[1450]
[1451]
[1452]
[1453]
[1454]
[1455]
[1456]
[1457]
[1458]
[1459]
[1460]
Underfull \hbox (badness 1412) in paragraph at lines 903--905
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r

[1461]
[1462]
[1463]
[1464]
[1465]
[1466]
[1467]
[1468]
Underfull \hbox (badness 2503) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1469]
[1470]
[1471]
[1472]
[1473]
[1474]
[1475]
Overfull \hbox (5.23488pt too wide) in paragraph at lines 1798--1798
 []  \T1/zi4/m/n/9 if(is.null(xout)) { rx <- range(x, na.rm=TRUE); xout <- seq(
rx[1], rx[2], length.out = 25) }[] 

[1476]
[1477]
[1478]
[1479]
[1480]
[1481]
[1482]
[1483]
[1484]
[1485]
[1486]
[1487]
[1488]
[1489]
[1490]
[1491]
[1492]
[1493]
[1494]
[1495]
[1496]
[1497]
[1498]
[1499]
[1500]
[1501]
[1502]
[1503]
Underfull \hbox (badness 2503) in paragraph at lines 3626--3629
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1504]
[1505]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3741.


[1506]
[1507]
[1508]
[1509]
[1510]
[1511]
[1512]
[1513]
[1514]
[1515]
[1516]
[1517]
[1518]
[1519]
[1520]
[1521]
[1522]
[1523]
[1524]
Underfull \hbox (badness 3989) in paragraph at lines 4916--4923
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =

[1525]
[1526]
[1527]
[1528]
[1529]
[1530]
[1531]
[1532]
[1533]
[1534]
Underfull \hbox (badness 2556) in paragraph at lines 5581--5584
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For

[1535]
[1536]
[1537]
[1538]
[1539]
[1540]
[1541]
Underfull \hbox (badness 2503) in paragraph at lines 5997--6001
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1542]
[1543]
[1544]
[1545]
[1546]
[1547]
[1548]
[1549]
[1550]
[1551]
[1552]
[1553]
[1554]
Underfull \hbox (badness 7081) in paragraph at lines 6802--6805
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6806--6808
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also

[1555]
[1556]
[1557]
[1558]
[1559]
[1560]
Underfull \vbox (badness 10000) has occurred while \output is active
[1561]
[1562]
[1563]
Underfull \vbox (badness 10000) has occurred while \output is active
[1564]
[1565]
[1566]
[1567]
[1568]
Underfull \hbox (badness 10000) in paragraph at lines 7704--7707
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/
zi4/m/sl/10 dist()[]\T1/ptm/m/n/10 , the

[1569]
[1570]
[1571]
Underfull \hbox (badness 2635) in paragraph at lines 7848--7851
[]\T1/ptm/m/n/10 The CRAN task view on prob-a-bil-ity dis-tri-bu-tions, [][]$\T
1/zi4/m/sl/10 https : / / CRAN . R-[]project . org / view =

[1572]
[1573]
[1574]
[1575]
[1576]
[1577]
[1578]
[1579]
[1580]
[1581]
[1582]
[1583]
Underfull \hbox (badness 1960) in paragraph at lines 8597--8600
[]\T1/ptm/m/n/10 the [][][]\T1/zi4/m/sl/10 na.action[][][] []\T1/ptm/m/n/10 to 
be used if []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which
 case

[1584]
[1585]
[1586]
[1587]
[1588]
[1589]
[1590]
[1591]
[1592]
[1593]
[1594]
[1595]
[1596]
Underfull \hbox (badness 2626) in paragraph at lines 9439--9442
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If

[1597]
[1598]
Underfull \hbox (badness 2503) in paragraph at lines 9546--9550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1599]
[1600]
[1601]
[1602]
[1603]
[1604]
[1605]
[1606]
[1607]
[1608]
[1609]
Underfull \hbox (badness 1253) in paragraph at lines 10301--10306
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor defin-ing the global test pro-ce-dure fo
r all pa-ram-e-ters:

Underfull \hbox (badness 1337) in paragraph at lines 10306--10309
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1610]
[1611]
[1612]
Underfull \vbox (badness 10000) has occurred while \output is active
[1613]
[1614]
[1615]
[1616]
[1617]
[1618]
[1619]
[1620]
[1621]
[1622]
[1623]
[1624]
Underfull \hbox (badness 4518) in paragraph at lines 11250--11255
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1625]
[1626]
[1627]
[1628]
[1629]
Underfull \hbox (badness 2142) in paragraph at lines 11621--11624
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

Underfull \hbox (badness 1253) in paragraph at lines 11640--11643
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,

[1630]
Underfull \hbox (badness 1708) in paragraph at lines 11702--11706
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:

[1631]
[1632]
[1633]
Underfull \hbox (badness 1005) in paragraph at lines 11924--11928
[]\T1/ptm/m/n/10 Method []\T1/zi4/m/sl/10 "centroid" []\T1/ptm/m/n/10 has been 
rec-om-mended to be used with \T1/ptm/m/it/10 squared \T1/ptm/m/n/10 Eu-clidean
 dis-tances

[1634]
[1635]
[1636]
Underfull \hbox (badness 1694) in paragraph at lines 12118--12121
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

[1637]
[1638]
[1639]
[1640]
[1641]
[1642]
[1643]
[1644]
[1645]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.12627 \aliasA{hat}{influence.measures}{hat}
                                             
[1646]
[1647]
Underfull \hbox (badness 1484) in paragraph at lines 12783--12785
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing

[1648]
[1649]
[1650]
[1651]
[1652]
[1653]
[1654]
[1655]
[1656]
[1657]
[1658]
Underfull \hbox (badness 10000) in paragraph at lines 13391--13393
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =

[1659]
[1660]
[1661]
[1662]
[1663]
Underfull \hbox (badness 2894) in paragraph at lines 13735--13739
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method

[1664]
[1665]
[1666]
[1667]
[1668]
[1669]
[1670]
[1671]
[1672]
[1673]
[1674]
[1675]
Underfull \hbox (badness 1281) in paragraph at lines 14478--14482
[]\T1/ptm/m/n/10 Johnstone IM, Velle-man PF (1985). ``The Re-sis-tant Line and 
Re-lated Re-gres-sion Meth-

[1676]
Underfull \hbox (badness 4518) in paragraph at lines 14567--14572
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1677]
[1678]
[1679]
[1680]
[1681]
[1682]
[1683]
[1684]
[1685]
[1686]
Underfull \hbox (badness 1596) in paragraph at lines 15205--15208
\T1/ptm/m/n/10 to []\T1/zi4/m/sl/10 print(<loadings>, ...)[]\T1/ptm/m/n/10 , he
nce, e.g., []\T1/zi4/m/sl/10 cutoff = <frac>[]\T1/ptm/m/n/10 ; ig-nored for

[1687]
Underfull \hbox (badness 4518) in paragraph at lines 15263--15268
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by

[1688]
[1689]
Underfull \hbox (badness 6412) in paragraph at lines 15404--15408
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 15411--15413
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is

[1690]
[1691]
[1692]
[1693]
[1694]
[1695]
[1696]
[1697]
[1698]
[1699]
[1700]
[1701]
[1702]
[1703]
[1704]
[1705]
[1706]
[1707]
Underfull \hbox (badness 2503) in paragraph at lines 16503--16507
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1708]
[1709]
Underfull \vbox (badness 3803) has occurred while \output is active
[1710]
[1711]
[1712]
[1713]
[1714]
[1715]
[1716]
Underfull \hbox (badness 10000) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 17024--17030
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms

[1717]
[1718]
[1719]
[1720]
[1721]
[1722]
[1723]
[1724]
[1725]
[1726]
[1727]
[1728]
[1729]
[1730]
[1731]
[1732]
[1733]
[1734]
[1735]
[1736]
[1737]
[1738]
[1739]
[1740]
[1741]
[1742]
Underfull \hbox (badness 1158) in paragraph at lines 18695--18698
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-

[1743]
[1744]
Underfull \vbox (badness 3803) has occurred while \output is active
[1745]
Underfull \vbox (badness 10000) has occurred while \output is active
[1746]
Underfull \vbox (badness 10000) has occurred while \output is active
[1747]
[1748]
[1749]
[1750]
[1751]
[1752]
[1753]
[1754]
[1755]
[1756]
[1757]
[1758]
[1759]
[1760]
Underfull \hbox (badness 1377) in paragraph at lines 19758--19763
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19763--19766
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19776--19780
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19776--19780
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19784--19788
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if

[1761]
[1762]
[1763]
Underfull \vbox (badness 10000) has occurred while \output is active
[1764]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 20009--20009
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 20012--20012
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 

[1765]
[1766]
[1767]
[1768]
[1769]
[1770]
[1771]
[1772]
Underfull \hbox (badness 1337) in paragraph at lines 20505--20508
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1773]
[1774]
[1775]
[1776]
[1777]
[1778]
[1779]
[1780]
[1781]
Underfull \hbox (badness 10000) in paragraph at lines 20985--20991
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col

[1782]
[1783]
[1784]
[1785]
[1786]
[1787]
[1788]
Underfull \hbox (badness 1194) in paragraph at lines 21419--21422
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence

[1789]
[1790]
[1791]
[1792]
[1793]
[1794]
Underfull \hbox (badness 2503) in paragraph at lines 21801--21804
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

[1795]
Underfull \hbox (badness 3919) in paragraph at lines 21828--21830
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson

[1796]
[1797]
[1798]
[1799]
[1800]
Underfull \hbox (badness 1337) in paragraph at lines 22168--22171
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1801]
[1802]
[1803]
[1804]
[1805]
[1806]
[1807]
[1808]
[1809]
[1810]
[1811]
[1812]
[1813]
[1814]
[1815]
[1816]
Underfull \hbox (badness 10000) in paragraph at lines 23168--23174
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,

[1817]
[1818]
[1819]
[1820]
[1821]
[1822]
[1823]
[1824]
[1825]
[1826]
[1827]
[1828]
[1829]
[1830]
[1831]
[1832]
[1833]
[1834]
[1835]
[1836]
[1837]
[1838]
[1839]
[1840]
[1841]
Underfull \hbox (badness 1337) in paragraph at lines 24658--24664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1842]
[1843]
[1844]
[1845]
[1846]
[1847]
[1848]
[1849]
Underfull \hbox (badness 1436) in paragraph at lines 25147--25150
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,

Underfull \hbox (badness 1009) in paragraph at lines 25150--25153
[]\T1/ptm/m/n/10 small non-negative num-ber to pro-tect against round-ing er-ro
rs when []\T1/zi4/m/sl/10 j <-

[1850]
[1851]
Underfull \hbox (badness 10000) in paragraph at lines 25316--25317
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _

[1852]
[1853]
[1854]
[1855]
[1856]
[1857]
[1858]
[1859]
[1860]
[1861]
[1862]
[1863]
[1864]
[1865]
[1866]
[1867]
Underfull \hbox (badness 1824) in paragraph at lines 26289--26295
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 26289--26295
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where

Underfull \hbox (badness 10000) in paragraph at lines 26310--26313
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =

[1868]
[1869]
[1870]
[1871]
[1872]
[1873]
[1874]
[1875]
Underfull \vbox (badness 10000) has occurred while \output is active
[1876]
[1877]
Underfull \hbox (badness 2165) in paragraph at lines 26894--26899
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,

[1878]
[1879]
[1880]
Underfull \hbox (badness 1867) in paragraph at lines 27102--27104
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 27118--27122
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-

[1881]
[1882]
[1883]
[1884]
[1885]
[1886]
[1887]
[1888]
[1889]
[1890]
[1891]
[1892]
[1893]
[1894]
[1895]
[1896]
[1897]
[1898]
[1899]
[1900]
[1901]
[1902]
[1903]
[1904]
[1905]
[1906]
Underfull \vbox (badness 10000) has occurred while \output is active
[1907]
Underfull \hbox (badness 3514) in paragraph at lines 28799--28804
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1908]
[1909]
[1910]
[1911]
[1912]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 29033--29033
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 29069--29075
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1913]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 29129--29129
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 

[1914]
[1915]
[1916]
Underfull \hbox (badness 3514) in paragraph at lines 29302--29307
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1917]
[1918]
Underfull \hbox (badness 3514) in paragraph at lines 29389--29394
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1919]
Underfull \hbox (badness 3514) in paragraph at lines 29454--29459
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1920]
[1921]
Underfull \hbox (badness 3514) in paragraph at lines 29548--29553
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1922]
Underfull \hbox (badness 6691) in paragraph at lines 29640--29645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion

[1923]
[1924]
[1925]
[1926]
[1927]
[1928]
[1929]
[1930]
Underfull \hbox (badness 4024) in paragraph at lines 30135--30138
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which

[1931]
[1932]
[1933]
[1934]
[1935]
[1936]
[1937]
[1938]
[1939]
[1940]
Underfull \hbox (badness 5431) in paragraph at lines 30753--30755
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1941]
[1942]
[1943]
[1944]
Underfull \hbox (badness 5431) in paragraph at lines 30971--30974
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if

[1945]
[1946]
[1947]
[1948]
[1949]
Underfull \hbox (badness 1337) in paragraph at lines 31286--31290
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1950]
[1951]
[1952]
Underfull \hbox (badness 1127) in paragraph at lines 31428--31431
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for

[1953]
[1954]
[1955]
Underfull \hbox (badness 1616) in paragraph at lines 31646--31649
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when

[1956]
[1957]
[1958]
[1959]
[1960]
[1961]
[1962]
[1963]
[1964]
[1965]
[1966]
[1967]
[1968]
[1969]
[1970]
[1971]
[1972]
[1973]
[1974]
[1975]
Underfull \hbox (badness 3557) in paragraph at lines 32900--32904
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =

[1976]
[1977]
[1978]
Underfull \vbox (badness 10000) has occurred while \output is active
[1979]
[1980]
[1981]
Underfull \hbox (badness 1337) in paragraph at lines 33268--33272
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1982]
[1983]
[1984]
[1985]
[1986]
[1987]
[1988]
[1989]
[1990]
Underfull \hbox (badness 1337) in paragraph at lines 33816--33820
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of

[1991]
[1992]
[1993]
[1994]
[1995]
[1996]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 34234--34234
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 

[1997]
[1998]
[1999]
[2000]
[2001]) (./stats4-pkg.tex
[2002]
Chapter 11.

[2003]
[2004]
[2005]
Underfull \vbox (badness 10000) has occurred while \output is active
[2006]
Underfull \vbox (badness 10000) has occurred while \output is active
[2007]
[2008]
[2009]
[2010]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas
h.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.506 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                  
[2011]
[2012]
[2013]) (./tcltk-pkg.tex
[2014]
Chapter 12.

[2015]
[2016]
[2017]
[2018]
[2019]
[2020]
[2021]
Underfull \vbox (badness 10000) has occurred while \output is active
[2022]
Underfull \vbox (badness 10000) has occurred while \output is active
[2023]
Underfull \hbox (badness 1546) in paragraph at lines 687--694
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning

[2024]
[2025]
[2026]
[2027]
[2028]
Underfull \vbox (badness 10000) has occurred while \output is active
[2029]
[2030]
[2031]
[2032]
[2033]
[2034]
[2035]
[2036]) (./tools-pkg.tex
Chapter 13.

[2037]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.


[2038]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas

[2039]
[2040]
[2041]
Underfull \hbox (badness 1308) in paragraph at lines 326--339
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 326--339
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 326--339
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and

[2042]
[2043]
Underfull \hbox (badness 3039) in paragraph at lines 429--431
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any

[2044]
Underfull \hbox (badness 1142) in paragraph at lines 501--505
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory

[2045]
[2046]
[2047]
[2048]
[2049]
[2050]
[2051] [2052]
[2053]
[2054]
[2055]
[2056]
[2057]
[2058]
Underfull \hbox (badness 1014) in paragraph at lines 1346--1348
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

Underfull \hbox (badness 7238) in paragraph at lines 1352--1354
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

[2059]
Underfull \hbox (badness 10000) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1389--1392
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,

[2060]
[2061]
[2062]
[2063]
[2064]
[2065]
Underfull \hbox (badness 10000) in paragraph at lines 1783--1794
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 CRAN_package_db()[]\T1/ptm/m/n/10 
, []\T1/zi4/m/it/10 CRAN_check_results()[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 CR
AN_check_details() []\T1/ptm/m/n/10 and

[2066]
[2067]
Underfull \hbox (badness 4096) in paragraph at lines 1934--1942
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2068]
Underfull \hbox (badness 1082) in paragraph at lines 1944--1946
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 for all known trees (see

[2069]
[2070]
[2071]
[2072]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has
 been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2189 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC
MD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2190 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                  
[2073]
[2074]
[2075]
[2076]
[2077]
[2078]
[2079]
[2080]
Underfull \hbox (badness 3386) in paragraph at lines 2736--2739
[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/it/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of

[2081]
[2082]
[2083]
Underfull \hbox (badness 4096) in paragraph at lines 2899--2907
\T1/zi4/m/it/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

[2084]
[2085]
[2086]
[2087]
[2088]
[2089]
[2090]
[2091]
[2092]
[2093]
[2094]
[2095]
[2096]
[2097]
[2098]
[2099]
Underfull \hbox (badness 1424) in paragraph at lines 3933--3935
[]\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by

[2100]
[2101]
[2102]
Underfull \hbox (badness 4792) in paragraph at lines 4106--4107
[]\T1/ptm/m/n/10 A func-tion to for-mat item num-bers in

[2103]
[2104]
[2105]
[2106]
[2107]
[2108]
[2109]
[2110]
[2111]
[2112]
Underfull \hbox (badness 10000) in paragraph at lines 4717--4719
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,

[2113]
[2114]
[2115]
[2116]
[2117]
[2118]
Overfull \hbox (6.71034pt too wide) in paragraph at lines 5047--5047
 []\T1/zi4/m/n/9 toTitleCase("a small fox is jumping")    # "a Small Fox is .."
     (the \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 a\TS1/zi4/m/n/9 ' \T1/zi4/m/n/9 may cha
nge)% i.e. BUG[] 

[2119]
[2120]
[2121]
Underfull \hbox (badness 1796) in paragraph at lines 5256--5261
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type =
=

[2122]
Underfull \hbox (badness 1838) in paragraph at lines 5342--5348
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

Underfull \hbox (badness 10000) in paragraph at lines 5342--5348
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file

[2123]
[2124]
[2125]
[2126]
[2127]
[2128]
Underfull \hbox (badness 2197) in paragraph at lines 5693--5703
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 :

[2129]
Underfull \hbox (badness 1571) in paragraph at lines 5768--5772
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by

[2130]
[2131]
[2132]
[2133]) (./utils-pkg.tex
[2134]
Chapter 14.

[2135]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ',

[2136]
[2137]
[2138]
[2139]
[2140]
[2141]
[2142]
[2143]
[2144]
[2145]
Underfull \hbox (badness 10000) in paragraph at lines 727--733
[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 727--733
[]\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the

[2146]
[2147]
[2148]
Underfull \hbox (badness 3861) in paragraph at lines 942--947
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,

[2149]
[2150]
[2151]
Underfull \hbox (badness 10000) in paragraph at lines 1146--1148
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing

[2152]
[2153]
[2154]
Underfull \vbox (badness 3803) has occurred while \output is active
[2155]
[2156]
[2157]
[2158]
[2159]
[2160]
[2161]
Underfull \hbox (badness 3919) in paragraph at lines 1755--1758
[]\T1/ptm/m/n/10 the re-cip-i-ent's email ad-dress, which is by de-fault in-fer
red from the

Underfull \hbox (badness 1371) in paragraph at lines 1765--1767
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2162]
[2163]
[2164]
[2165]
[2166]
[2167]
[2168]
[2169]
[2170]
[2171]
Underfull \hbox (badness 2057) in paragraph at lines 2387--2389
[]\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing

[2172]
[2173]
Underfull \hbox (badness 2150) in paragraph at lines 2473--2480
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

Underfull \hbox (badness 1400) in paragraph at lines 2473--2480
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more

[2174]
[2175]
[2176]
[2177]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2756 ... the Clipboard in MS Windows}{clipboard}
                                                  
[2178]
[2179]
[2180]
[2181]
[2182]
[2183]
[2184]
[2185]
[2186]
[2187]
[2188]
[2189]
[2190]
[2191]
[2192]
[2193]
[2194]
[2195]
[2196]
[2197]
[2198]
Underfull \hbox (badness 6842) in paragraph at lines 4074--4079
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use


[2199]
Underfull \hbox (badness 1430) in paragraph at lines 4156--4160
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the

[2200]
Underfull \hbox (badness 1184) in paragraph at lines 4232--4248
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4232--4248
\T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named

[2201]
[2202]
Underfull \hbox (badness 10000) in paragraph at lines 4382--4384
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and

[2203]
[2204]
[2205]
[2206]
[2207]
[2208]
[2209]
[2210]
[2211]
[2212]
[2213]
[2214]
[2215]
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5160 ...mat Unordered and Ordered Lists}{format}
                                                  
[2216]
[2217]
[2218]
[2219]
[2220]
[2221]
[2222]
[2223]
Underfull \hbox (badness 1622) in paragraph at lines 5684--5688
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the

[2224]
[2225]
[2226]
[2227]
[2228]
[2229]
Underfull \hbox (badness 1448) in paragraph at lines 6069--6074
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing

[2230]
[2231]
[2232]
[2233]
[2234]
[2235]
[2236]
[2237]
Underfull \hbox (badness 1371) in paragraph at lines 6629--6631
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to

[2238]
[2239]
Underfull \hbox (badness 1502) in paragraph at lines 6718--6724
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6718--6724
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file

[2240]
[2241]
[2242]
Underfull \hbox (badness 10000) in paragraph at lines 6904--6913
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6904--6913
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/it/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/it/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .

[2243]
Underfull \hbox (badness 2150) in paragraph at lines 6967--6970
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See

[2244]
[2245]
Underfull \hbox (badness 3118) in paragraph at lines 7105--7107
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for

[2246]
[2247]
Underfull \hbox (badness 1325) in paragraph at lines 7283--7287
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able

[2248]
[2249]
Underfull \hbox (badness 1424) in paragraph at lines 7375--7378
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to

[2250]
Underfull \hbox (badness 3219) in paragraph at lines 7457--7464
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i
t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 7457--7464
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

Underfull \hbox (badness 1596) in paragraph at lines 7457--7464
[][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

Underfull \hbox (badness 2932) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no

Underfull \hbox (badness 1629) in paragraph at lines 7470--7472
[]\T1/ptm/m/n/10 you will need to have in-stalled the Rtools col-lec-tion from 
[][]$\T1/zi4/m/it/10 https : / / CRAN .

[2251]
Underfull \hbox (badness 1024) in paragraph at lines 7586--7589
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/
ptm/m/n/10 will

[2252]
Underfull \hbox (badness 10000) in paragraph at lines 7620--7625
[][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i
t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,

[2253]
Underfull \hbox (badness 5133) in paragraph at lines 7685--7689
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's

[2254]
[2255]
[2256]
[2257]
[2258]
[2259]
[2260]
[2261]
[2262]
[2263]
[2264]
Underfull \hbox (badness 10000) in paragraph at lines 8356--8358
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class

[2265]
[2266]
[2267]
[2268]
[2269]
[2270]
[2271]
[2272] [2273]
[2274]
Underfull \hbox (badness 3690) in paragraph at lines 8992--8995
[]\T1/ptm/m/n/10 optionally a char-ac-ter string spec-i-fy-ing an [][]En-cod-in
g[][][] for the pack-age

[2275]
[2276]
[2277]
Underfull \hbox (badness 2310) in paragraph at lines 9145--9150
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,

[2278]
[2279]
[2280]
[2281]
[2282]
[2283]
[2284]
[2285]
[2286]
Underfull \hbox (badness 1248) in paragraph at lines 9725--9729
[]\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the

[2287]
[2288]
[2289]
[2290]
[2291]
Underfull \hbox (badness 2600) in paragraph at lines 10024--10027
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to

[2292]
[2293]
[2294]
[2295]
[2296]
[2297]
[2298]
[2299]
[2300]
Underfull \hbox (badness 1097) in paragraph at lines 10662--10665
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case

[2301]
[2302]
Underfull \hbox (badness 3000) in paragraph at lines 10798--10803
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 read.table[][][][]\T1/ptm/m/n/10 ;

[2303]
[2304]
[2305]
[2306]
[2307]
[2308]
[2309]
[2310]
[2311]
Underfull \hbox (badness 2134) in paragraph at lines 11395--11400
[][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
it/10 write.table[][][][]\T1/ptm/m/n/10 ;

[2312]
Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


Underfull \hbox (badness 10000) in paragraph at lines 11451--11456
[]\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,

[2313]
[2314]
[2315]
[2316]
[2317]
[2318]
[2319]
[2320]
Underfull \hbox (badness 6110) in paragraph at lines 11951--11954
\T1/ptm/m/n/10 Ac-cessed 2024-02-22, [][]$\T1/zi4/m/it/10 https : / / en . wiki
pedia . org / w / index . php ? title = Roman _ numerals &

[2321]
[2322]
[2323]
[2324]
[2325]
[2326]
[2327]
Underfull \hbox (badness 4060) in paragraph at lines 12394--12397
[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

Overfull \hbox (18.77168pt too wide) in paragraph at lines 12417--12417
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 

[2328]
[2329]
[2330]
[2331]
Underfull \hbox (badness 2150) in paragraph at lines 12673--12675
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /

[2332]
[2333]
Underfull \hbox (badness 5832) in paragraph at lines 12762--12767
[]\T1/zi4/m/it/10 Rtangle []\T1/ptm/m/n/10 is the Stan-gle driver. []\T1/zi4/m/
it/10 RtangleSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RtangleRuncode[]\T1/ptm/
m/n/10 , []\T1/zi4/m/it/10 RtangleWritedoc[]\T1/ptm/m/n/10 ,

[2334]
[2335]
Underfull \vbox (badness 3803) has occurred while \output is active
[2336]
[2337]
Underfull \hbox (badness 10000) in paragraph at lines 13038--13046
[]\T1/zi4/m/it/10 RweaveLatex []\T1/ptm/m/n/10 is the Sweave driver. []\T1/zi4/
m/it/10 RweaveLatexSetup[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 RweaveLatexWritedo
c[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13059--13063
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

[2338]
Underfull \hbox (badness 10000) in paragraph at lines 13092--13098
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a

Underfull \hbox (badness 2762) in paragraph at lines 13107--13113
\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set

[2339]
[2340]
Underfull \hbox (badness 1009) in paragraph at lines 13296--13308
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

[2341]
Underfull \hbox (badness 4779) in paragraph at lines 13366--13368
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and

[2342]
[2343]
[2344]
[2345]
[2346]
[2347]
[2348]
Underfull \hbox (badness 3780) in paragraph at lines 13821--13827
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via

[2349]
Underfull \hbox (badness 2635) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of

[2350]
[2351]
[2352]
Underfull \hbox (badness 2302) in paragraph at lines 14048--14050
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call

[2353]
[2354]
[2355]
[2356]
[2357]
Underfull \hbox (badness 4441) in paragraph at lines 14347--14352
[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/it/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/it/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/it/10 ) []\T1/ptm/m/n/10 will not have

Underfull \hbox (badness 5970) in paragraph at lines 14356--14359
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive

[2358]
[2359]
[2360]
[2361]
[2362]
[2363]
[2364]
Underfull \hbox (badness 2932) in paragraph at lines 14786--14793
[]\T1/ptm/m/n/10 If []\T1/zi4/m/it/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

Underfull \hbox (badness 1688) in paragraph at lines 14786--14793
\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/it/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-

[2365]
[2366]
[2367]
[2368]
[2369]
[2370]
Underfull \hbox (badness 6510) in paragraph at lines 15194--15198
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

Underfull \hbox (badness 10000) in paragraph at lines 15201--15204
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /

Underfull \hbox (badness 2245) in paragraph at lines 15201--15204
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX

[2371]
[2372]
[2373]
[2374]
[2375]
[2376]
[2377]
[2378]
[2379]
[2380]
[2381]
Underfull \hbox (badness 10000) in paragraph at lines 15905--15910
[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to

Underfull \hbox (badness 3861) in paragraph at lines 15905--15910
[][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i
t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

Underfull \hbox (badness 1052) in paragraph at lines 15911--15913
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See

[2382]
Underfull \hbox (badness 10000) in paragraph at lines 15975--15978
[][][]\T1/zi4/m/it/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
it/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,

[2383]
[2384]
[2385]
[2386]
[2387]
[2388]
[2389]
[2390]
[2391]
[2392]
[2393]
[2394]
[2395]
[2396]
[2397]
[2398]) (./fullrefman.ind

[2399]

[2400]

[2401]

[2402]

[2403]

[2404]

[2405]

[2406]

[2407]

[2408]

[2409]

[2410]

[2411]

[2412]

[2413]

[2414]

[2415]

[2416]

[2417]

[2418]

[2419]

[2420]

[2421]

[2422]

[2423]

[2424]

[2425]

[2426]

[2427]

[2428]

[2429]

[2430]

[2431]

[2432]

[2433]

[2434]

[2435]

[2436]

[2437]

[2438]

[2439]

[2440]

[2441]

[2442]

[2443]

[2444]

[2445]

[2446]

[2447]

[2448]

[2449]

[2450]

[2451]

[2452]

[2453]

[2454]

[2455]

[2456]

[2457]

Overfull \hbox (33.3567pt too wide) in paragraph at lines 10174--10176
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 


[2458]

[2459]

[2460]

[2461]

[2462]

[2463]

Overfull \hbox (20.8567pt too wide) in paragraph at lines 11585--11587
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 

[2464]

[2465]

[2466]

[2467]

[2468]

[2469]

[2470]

[2471]

[2472]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 13466--13468
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13468--13470
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

Overfull \hbox (5.8567pt too wide) in paragraph at lines 13470--13472
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 


[2473]

[2474]

[2475]

[2476]

[2477]

[2478]

[2479]

[2480]

[2481]

[2482]) (./fullrefman.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgTMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dMatrix.Rdash.class} has been referenced but do
es not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dgCMatrix.Rdash.class} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re
placed by a fixed one


pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.sparseMatrix.Rdash.class} has been referenced b
ut does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.MethodsList.Rdash.class} has been referenced bu
t does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no
t exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not
 exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.pipe\\unhbox\040\\voidb@x\040\\unskip\040\040\\
ignorespaces\040operator} has been referenced but does not exist, replaced by a
 fixed one


pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi
st, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one


pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis
t, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.xfig} has been referenced but does not exist, r
eplaced by a fixed one


pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one


pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.deprecated} has been referenced but 
does not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.base.Rdash.defunct} has been referenced but doe
s not exist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one


pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one

 </tmp/texfonts/pk/ljfour/jknappen/ec/tctt1000.600pk> </tmp/texfonts/pk/ljfour/
jknappen/ec/tctt0900.600pk></usr/share/texlive/texmf-dist/fonts/type1/public/in
consolata/Inconsolata-zi4b.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/inconsolata/Inconsolata-zi4r.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cmextra/cmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmbx10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/symbols/msbm10.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/
helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a
.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/ty
pe1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (2515 pages, 6876994 bytes).
Transcript written on fullrefman.log.
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[1]: Leaving directory '/build/r-base-4.6.0'
/usr/bin/make -k vignettes
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/m4'
make[2]: Entering directory '/build/r-base-4.6.0/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tools'
make[2]: Entering directory '/build/r-base-4.6.0/doc'
make[3]: Entering directory '/build/r-base-4.6.0/doc/html'
make[3]: Leaving directory '/build/r-base-4.6.0/doc/html'
make[3]: Entering directory '/build/r-base-4.6.0/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/r-base-4.6.0/doc/manual'
make[2]: Leaving directory '/build/r-base-4.6.0/doc'
make[2]: Entering directory '/build/r-base-4.6.0/etc'
make[2]: Leaving directory '/build/r-base-4.6.0/etc'
make[2]: Entering directory '/build/r-base-4.6.0/share'
make[2]: Leaving directory '/build/r-base-4.6.0/share'
make[2]: Entering directory '/build/r-base-4.6.0/src'
make[3]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Entering directory '/build/r-base-4.6.0/src/scripts'
make[4]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Leaving directory '/build/r-base-4.6.0/src/scripts'
make[3]: Entering directory '/build/r-base-4.6.0/src/include'
make[4]: Entering directory '/build/r-base-4.6.0/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.6.0/src/include'
make[3]: Entering directory '/build/r-base-4.6.0/src/extra'
make[4]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.6.0/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[4]: Leaving directory '/build/r-base-4.6.0/src/extra/tre'
make[3]: Leaving directory '/build/r-base-4.6.0/src/extra'
make[3]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: Entering directory '/build/r-base-4.6.0/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Leaving directory '/build/r-base-4.6.0/src/appl'
make[3]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: Entering directory '/build/r-base-4.6.0/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Leaving directory '/build/r-base-4.6.0/src/nmath'
make[3]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[4]: Entering directory '/build/r-base-4.6.0/src/unix'
i686-linux-gnu-gcc -std=gnu23 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -ffile-prefix-map=/build/r-base-4.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.6.0"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Leaving directory '/build/r-base-4.6.0/src/unix'
make[3]: Entering directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/lib/libR.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Entering directory '/build/r-base-4.6.0/src/main'
make[5]: Entering directory '/build/r-base-4.6.0/src/main'
/build/r-base-4.6.0/bin/exec/R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/main'
make[4]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Leaving directory '/build/r-base-4.6.0/src/main'
make[3]: Entering directory '/build/r-base-4.6.0/src/modules'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.6.0/src/modules/X11'
/build/r-base-4.6.0/modules/R_X11.so is unchanged
/build/r-base-4.6.0/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.6.0/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.6.0/src/modules'
make[3]: Entering directory '/build/r-base-4.6.0/src/library'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/profile'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/translations'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
all.R is unchanged
make[5]: '../../../library/tools/misc/wre.txt' is up to date.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tools'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/utils'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/methods'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/grid'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/splines'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.6.0/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.6.0/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.6.0/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.6.0/src/library/base'
make[4]: Leaving directory '/build/r-base-4.6.0/src/library/base'
installing parsed NAMESPACE files
installing R bibliographies
installing R dictionaries
make[3]: Leaving directory '/build/r-base-4.6.0/src/library'
make[2]: Leaving directory '/build/r-base-4.6.0/src'
make[2]: Entering directory '/build/r-base-4.6.0/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.6.0/tests'
make[2]: Entering directory '/build/r-base-4.6.0/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
make[2]: Leaving directory '/build/r-base-4.6.0/src/library'
make[1]: Leaving directory '/build/r-base-4.6.0'
touch make-indep-stamp
*** check ***
xvfb-run make check-all
make[1]: Entering directory '/build/r-base-4.6.0'
make[2]: Entering directory '/build/r-base-4.6.0/tests'
make[3]: Entering directory '/build/r-base-4.6.0/tests'
make[4]: Entering directory '/build/r-base-4.6.0/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... NOTE
  1104,1105d1103
  < Warning in as.POSIXct.POSIXlt(from) :
  <   datetimes before 1902 may not be accurate: warns once per session
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... NOTE
  7589,7590c7589,7590
  < 	Fisher's Exact Test for Count Data hybrid using asym.chisq. iff
  < 	(exp=5, perc=80, Emin=1)
  ---
  > 	Fisher's Exact Test for Count Data hybrid using asym.chisq. iff (exp=5,
  > 	perc=80, Emin=1)
  14319,14320c14319
  < 	4-sample test for equality of proportions without continuity
  < 	correction
  ---
  > 	4-sample test for equality of proportions without continuity correction
  14349,14350c14348
  < 	4-sample test for equality of proportions without continuity
  < 	correction
  ---
  > 	4-sample test for equality of proportions without continuity correction
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[4]: Leaving directory '/build/r-base-4.6.0/tests/Examples'
make[3]: Leaving directory '/build/r-base-4.6.0/tests'
make[3]: Entering directory '/build/r-base-4.6.0/tests'
running strict specific tests
make[4]: Entering directory '/build/r-base-4.6.0/tests'
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'structure.R' ... OK
  comparing 'structure.Rout' to './structure.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[4]: Leaving directory '/build/r-base-4.6.0/tests'
running sloppy specific tests
make[4]: Entering directory '/build/r-base-4.6.0/tests'
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ...11,13d10
< Warning message:
< In as.POSIXlt.POSIXct(x, tz) :
<   datetimes before 1902 may not be accurate: warns once per session
 OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
make[4]: Leaving directory '/build/r-base-4.6.0/tests'
make[4]: Entering directory '/build/r-base-4.6.0/tests'
checking Sys.timezone ...
make[5]: Entering directory '/build/r-base-4.6.0/tests'
running code in 'timezone.R' ... OK
make[5]: Leaving directory '/build/r-base-4.6.0/tests'
make[4]: Leaving directory '/build/r-base-4.6.0/tests'
make[3]: Leaving directory '/build/r-base-4.6.0/tests'
make[3]: Entering directory '/build/r-base-4.6.0/tests'
running regression tests ...
make[4]: Entering directory '/build/r-base-4.6.0/tests'
running code in 'array-subset.R' ... OK
running code in 'classes-methods.R' ... OK
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK